addBagPlot |
Add bagplot to existing plot |
checkForLegLoc |
Find best place on plot for placing legend |
convertPlotCoordPix |
Convert points of plot to coordinates in pixels |
cumFrqPlot |
Cumulative (or sorted) frequency plot (takes columns of 'dat' as separate series) |
histW |
Histogram (version by WR) |
legendHist |
Add histogram to existing plot |
MAplotW |
MA-plot (differential intensity versus average intensity) This type of plot is very common in high-throughput biology, see MA-plot. Basically one would like to compare numerous independent measures (ie gene transcript or protein abundance values) of 2 samples/data-sets, it is usual to compare a change ('Minus'=M) versus absolute mean value ('Average'=A). In high-throughput biology data are typically already transformed to log2 and thus, the 'M'-value represents a relative change. Besides, output from statistical testing by 'moderTest2grp' can be directly read to produce MA plots for diagnostic reasons. |
mouseOverHtmlFile |
Create mouse-over interactive html-pages (with links) |
partitionPlot |
Make matrix for layout to partition plotting area |
plotBy2Groups |
Separate and plot data by 2 groups |
plotPCAw |
PCA plot with bag-plot to highlight groups |
staggerdCountsPlot |
Staggered Chart for Ploting Counts to Multiple Leveles of the Threshold used |
vioplotW |
Violin-plots version W |