Error(s) in re-building vignettes:
--- re-building ‘consistencychecking-3.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/consistencychecking-3_files/figure-html/unnamed-chunk-8-1.png
672x240 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19052 bytes
Input file size = 19154 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14912
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14912

Output IDAT size = 14912 bytes (4140 bytes decrease)
Output file size = 14990 bytes (4164 bytes = 21.74% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/consistencychecking-3_files/figure-html/unnamed-chunk-8-2.png
672x240 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33681 bytes
Input file size = 33807 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26014
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26014

Output IDAT size = 26014 bytes (7667 bytes decrease)
Output file size = 26092 bytes (7715 bytes = 22.82% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/consistencychecking-3_files/figure-html/unnamed-chunk-11-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31267 bytes
Input file size = 31381 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25404
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25404

Output IDAT size = 25404 bytes (5863 bytes decrease)
Output file size = 25482 bytes (5899 bytes = 18.80% decrease)

--- finished re-building ‘consistencychecking-3.Rmd’

--- re-building ‘dataexploration-1.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-1-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19072 bytes
Input file size = 19174 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16320
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16320

Output IDAT size = 16320 bytes (2752 bytes decrease)
Output file size = 16398 bytes (2776 bytes = 14.48% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-3-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 119981 bytes
Input file size = 120227 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 88771
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 88771

Output IDAT size = 88771 bytes (31210 bytes decrease)
Output file size = 88849 bytes (31378 bytes = 26.10% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-5-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25739 bytes
Input file size = 25853 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19919
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19919

Output IDAT size = 19919 bytes (5820 bytes decrease)
Output file size = 19997 bytes (5856 bytes = 22.65% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-7-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 131032 bytes
Input file size = 131290 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 94428
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 94428

Output IDAT size = 94428 bytes (36604 bytes decrease)
Output file size = 94506 bytes (36784 bytes = 28.02% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/pain.time-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 79749 bytes
Input file size = 79935 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 57952
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 57952

Output IDAT size = 57952 bytes (21797 bytes decrease)
Output file size = 58030 bytes (21905 bytes = 27.40% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/obese.time-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 64122 bytes
Input file size = 64284 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 45061
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 45061

Output IDAT size = 45061 bytes (19061 bytes decrease)
Output file size = 45139 bytes (19145 bytes = 29.78% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/pain.binplot-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 87737 bytes
Input file size = 87935 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 66007
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 66007

Output IDAT size = 66007 bytes (21730 bytes decrease)
Output file size = 66085 bytes (21850 bytes = 24.85% decrease)

--- finished re-building ‘dataexploration-1.Rmd’

--- re-building ‘mbnmatime-overview.Rmd’ using rmarkdown
--- finished re-building ‘mbnmatime-overview.Rmd’

--- re-building ‘outputs-4.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/outputs-4_files/figure-html/unnamed-chunk-5-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 92107 bytes
Input file size = 92317 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 66570
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 66570

Output IDAT size = 66570 bytes (25537 bytes decrease)
Output file size = 66648 bytes (25669 bytes = 27.81% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/outputs-4_files/figure-html/unnamed-chunk-7-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20388 bytes
Input file size = 20490 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17070
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17070

Output IDAT size = 17070 bytes (3318 bytes decrease)
Output file size = 17148 bytes (3342 bytes = 16.31% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/outputs-4_files/figure-html/unnamed-chunk-12-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 58926 bytes
Input file size = 59088 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 42818
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 42818

Output IDAT size = 42818 bytes (16108 bytes decrease)
Output file size = 42896 bytes (16192 bytes = 27.40% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/outputs-4_files/figure-html/unnamed-chunk-13-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 81778 bytes
Input file size = 81964 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 61917
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 61917

Output IDAT size = 61917 bytes (19861 bytes decrease)
Output file size = 61995 bytes (19969 bytes = 24.36% decrease)

--- finished re-building ‘outputs-4.Rmd’

--- re-building ‘predictions-5.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/predictions-5_files/figure-html/unnamed-chunk-5-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 67180 bytes
Input file size = 67354 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 52894
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 52894

Output IDAT size = 52894 bytes (14286 bytes decrease)
Output file size = 52972 bytes (14382 bytes = 21.35% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/predictions-5_files/figure-html/unnamed-chunk-7-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31242 bytes
Input file size = 31356 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 24150
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 24150

Output IDAT size = 24150 bytes (7092 bytes decrease)
Output file size = 24228 bytes (7128 bytes = 22.73% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/predictions-5_files/figure-html/unnamed-chunk-8-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 75588 bytes
Input file size = 75774 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 58623
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 58623

Output IDAT size = 58623 bytes (16965 bytes decrease)
Output file size = 58701 bytes (17073 bytes = 22.53% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/predictions-5_files/figure-html/unnamed-chunk-9-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 56373 bytes
Input file size = 56523 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 42684
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 42684

Output IDAT size = 42684 bytes (13689 bytes decrease)
Output file size = 42762 bytes (13761 bytes = 24.35% decrease)

--- finished re-building ‘predictions-5.Rmd’

--- re-building ‘runmbnmatime-2.Rmd’ using rmarkdown

Quitting from lines 122-123 [unnamed-chunk-3] (runmbnmatime-2.Rmd)
Error: processing vignette 'runmbnmatime-2.Rmd' failed with diagnostics:
non-numeric argument to mathematical function
--- failed re-building ‘runmbnmatime-2.Rmd’

SUMMARY: processing the following file failed:
  ‘runmbnmatime-2.Rmd’

Error: Vignette re-building failed.
Execution halted