Error(s) in re-building vignettes:
--- re-building ‘ATQ_Guide.Rmd’ using rmarkdown
* installing *source* package ‘ATQ’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ATQ)
** Processing: /data/gannet/ripley/R/packages/tests-devel/ATQ.Rcheck/vign_test/ATQ/vignettes/ATQ_Guide_files/figure-html/epidemicSimulation-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27516 bytes
Input file size = 27630 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21761
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21761

Output IDAT size = 21761 bytes (5755 bytes decrease)
Output file size = 21839 bytes (5791 bytes = 20.96% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/ATQ.Rcheck/vign_test/ATQ/vignettes/ATQ_Guide_files/figure-html/epidemicSimulation-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27646 bytes
Input file size = 27760 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21436
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21436

Output IDAT size = 21436 bytes (6210 bytes decrease)
Output file size = 21514 bytes (6246 bytes = 22.50% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/ATQ.Rcheck/vign_test/ATQ/vignettes/ATQ_Guide_files/figure-html/epidemicSimulation-3.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25848 bytes
Input file size = 25962 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20264
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20264

Output IDAT size = 20264 bytes (5584 bytes decrease)
Output file size = 20342 bytes (5620 bytes = 21.65% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/ATQ.Rcheck/vign_test/ATQ/vignettes/ATQ_Guide_files/figure-html/epidemicSimulation-4.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25635 bytes
Input file size = 25749 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20152
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20152

Output IDAT size = 20152 bytes (5483 bytes decrease)
Output file size = 20230 bytes (5519 bytes = 21.43% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/ATQ.Rcheck/vign_test/ATQ/vignettes/ATQ_Guide_files/figure-html/epidemicSimulation-5.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25100 bytes
Input file size = 25214 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19541
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19541

Output IDAT size = 19541 bytes (5559 bytes decrease)
Output file size = 19619 bytes (5595 bytes = 22.19% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/ATQ.Rcheck/vign_test/ATQ/vignettes/ATQ_Guide_files/figure-html/epidemicSimulation-6.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26451 bytes
Input file size = 26565 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21150
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21150

Output IDAT size = 21150 bytes (5301 bytes decrease)
Output file size = 21228 bytes (5337 bytes = 20.09% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/ATQ.Rcheck/vign_test/ATQ/vignettes/ATQ_Guide_files/figure-html/epidemicSimulation-7.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29165 bytes
Input file size = 29279 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 22790
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 22790

Output IDAT size = 22790 bytes (6375 bytes decrease)
Output file size = 22868 bytes (6411 bytes = 21.90% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/ATQ.Rcheck/vign_test/ATQ/vignettes/ATQ_Guide_files/figure-html/epidemicSimulation-8.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26622 bytes
Input file size = 26736 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20541
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20541

Output IDAT size = 20541 bytes (6081 bytes decrease)
Output file size = 20619 bytes (6117 bytes = 22.88% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/ATQ.Rcheck/vign_test/ATQ/vignettes/ATQ_Guide_files/figure-html/epidemicSimulation-9.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25993 bytes
Input file size = 26107 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20085
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20085

Output IDAT size = 20085 bytes (5908 bytes decrease)
Output file size = 20163 bytes (5944 bytes = 22.77% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/ATQ.Rcheck/vign_test/ATQ/vignettes/ATQ_Guide_files/figure-html/epidemicSimulation-10.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26776 bytes
Input file size = 26890 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21166
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21166

Output IDAT size = 21166 bytes (5610 bytes decrease)
Output file size = 21244 bytes (5646 bytes = 21.00% decrease)


Quitting from lines 162-183 [metrics] (ATQ_Guide.Rmd)
Error: processing vignette 'ATQ_Guide.Rmd' failed with diagnostics:
unused arguments (ScYr = 2:10, yr.weights = c(2:10)/sum(c(2:10)))
--- failed re-building ‘ATQ_Guide.Rmd’

SUMMARY: processing the following file failed:
  ‘ATQ_Guide.Rmd’

Error: Vignette re-building failed.
Execution halted