Running ‘testthat.R’ [15s/48s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(rworkflows)
  > 
  > test_check("rworkflows")
  Checking public container repository exists: 'bioconductor/bioconductor_docker'
  Checking tag exists: 'devel'
  Checking public container repository exists: 'bioconductor/bioconductor_docker'
  Checking public container repository exists: 'bioconductor/bioconductor_typooooo'
  Checking public container repository exists: 'bioconductor/bioconductor_docker'
  Checking tag exists: 'typooo'
  Only tag name supplied to 'cont'. Assuming default= 'bioconductor/bioconductor_docker'
  Checking public container repository exists: 'bioconductor/bioconductor_docker'
  Checking tag exists: 'latest'
  Checking public container repository exists: 'bioconductor/bioconductor_docker'
  Checking tag exists: 'devel'
  Applying the same 'bioc' parameter to all 3 'os': 'devel'
  Checking public container repository exists: 'bioconductor/bioconductor_docker'
  Checking tag exists: 'devel'
  Checking public container repository exists: 'bioconductor/bioconductor_docker'
  Checking tag exists: 'devel'
  Checking public container repository exists: 'bioconductor/bioconductor_docker'
  Checking tag exists: 'devel'
  Constructing DESCRIPTION files for 1 R package(s).
  Constructing DESCRIPTION for: ABSSeq
  trying URL 'https://github.com/neurogenomics/templateR/raw/master/DESCRIPTION'
  Content type 'text/plain; charset=utf-8' length 707 bytes
  ==================================================
  downloaded 707 bytes
  
  Updating: Package --> MyPackageName
  Updating: Title --> This Package Does Awesome Stuff
  Updating: Description --> MyPackageName does several awesome things. Describe thing1. Describe thing2. Describe thing3.
  Updating: Authors --> yourGivenName yourFamilyName <yourEmail@email.com> [cre] (yourOrcidId)
  Updating: Depends --> R (>= 4.3)
  Deleting field: Suggests
  Updating: biocViews --> Genetics, SystemsBiology
  Updating: URL --> https://github.com/OwnerName/MyPackageName
  Updating: BugReports --> https://github.com/OwnerName/MyPackageName/issues
  Saving updated file: /home/hornik/tmp/scratch/RtmpMuktiI/DESCRIPTION9bb93cc97a13
  Cannot import DESCRIPTION file: NULL
  When refs is provided, paths must have the same length (or be set to NULL). Setting paths=NULL.
  When refs is provided, paths must have the same length (or be set to NULL). Setting paths=NULL.
  Cannot find DESCRIPTION for: typoooo
  Cannot find DESCRIPTION file for: typoooo
  Cannot import DESCRIPTION file: typo
  Cannot import DESCRIPTION file: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rworkflows.Rcheck/tests/DESCRIPTION
  When refs is provided, paths must have the same length (or be set to NULL). Setting paths=NULL.
  trying URL 'https://github.com/neurogenomics/MAGMA_Celltyping/raw/master/DESCRIPTION'
  Content type 'text/plain; charset=utf-8' length 2110 bytes
  ==================================================
  downloaded 2110 bytes
  
  Cannot find DESCRIPTION for: MAGMA_Celltyping
  Searching for DESCRIPTION file(s) in R repositories: BioCsoft, BioCann, BioCexp, BioCworkflows, CRAN
  Constructing DESCRIPTION files for 1 R package(s).
  Constructing DESCRIPTION for: ABSSeq
  Cannot find DESCRIPTION for: orthogene
  trying URL 'https://github.com/neurogenomics/orthogene/raw/main/DESCRIPTION'
  Content type 'text/plain; charset=utf-8' length 1677 bytes
  ==================================================
  downloaded 1677 bytes
  
  Finding hex sticker(s) for 1 package(s).
  Finding hex sticker(s) for 1 package(s).
  Cannot import DESCRIPTION file: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rworkflows.Rcheck/tests/DESCRIPTION
  Cannot import DESCRIPTION file: NULL
  Finding hex sticker(s) for 1 package(s).
  Finding hex sticker(s) for 1 package(s).
  When refs is provided, paths must have the same length (or be set to NULL). Setting paths=NULL.
  Finding hex sticker(s) for 1 package(s).
  Finding hex sticker(s) for 1 package(s).
  Finding hex sticker(s) for 1 package(s).
  Cannot find hex URL domain name. Returning NULL.
  Finding hex sticker(s) for 1 package(s).
  Hex URL does not exist (or is not public). Returning NULL.
  Finding hex sticker(s) for 1 package(s).
  Loading required namespace: biocViews
  Inferring biocViews.
  Inferring biocViews.
  Hello world
  Finding hex sticker(s) for 1 package(s).
  Adding CRAN release version.
  Adding CRAN checks.
  Adding CRAN downloads: last-month
  Adding CRAN downloads: grand-total
  Adding license.
  Adding DOI.
  Adding lifecycle.
  Adding version.
  package is up-to-date devel version
  Adding code size
  Adding commit.
  Adding actions.
  Adding codecov.
  Adding authors.
  When refs is provided, paths must have the same length (or be set to NULL). Setting paths=NULL.
  <img src='https://github.com/neurogenomics/rworkflows/raw/master/inst/hex/hex.png' title='Hex sticker for rworkflows' height='300'><br>
  [![](https://www.r-pkg.org/badges/version/rworkflows?color=black)](https://cran.r-project.org/package=rworkflows)
  [![CRAN checks](https://badges.cranchecks.info/summary/rworkflows.svg)](https://cran.r-project.org/web/checks/check_results_rworkflows.html)
  [![](http://cranlogs.r-pkg.org/badges/last-month/rworkflows?color=black)](https://cran.r-project.org/package=rworkflows)
  [![](http://cranlogs.r-pkg.org/badges/grand-total/rworkflows?color=black)](https://cran.r-project.org/package=rworkflows)
  [![License: GPL-3](https://img.shields.io/badge/license-GPL--3-blue.svg)](https://cran.r-project.org/web/licenses/GPL-3)
  [![](https://img.shields.io/badge/doi-doi:000000-blue.svg)](https://doi.org/doi:000000)
  [![](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
  <br>
  [![](https://img.shields.io/badge/devel%20version-0.99.13-black.svg)](https://github.com/neurogenomics/rworkflows)
  [![](https://img.shields.io/github/languages/code-size/neurogenomics/rworkflows.svg)](https://github.com/neurogenomics/rworkflows)
  [![](https://img.shields.io/github/last-commit/neurogenomics/rworkflows.svg)](https://github.com/neurogenomics/rworkflows/commits/master)
  <br>
  [![R build status](https://github.com/neurogenomics/rworkflows/workflows/rworkflow/badge.svg)](https://github.com/neurogenomics/rworkflows/actions)
  [![](https://codecov.io/gh/neurogenomics/rworkflows/branch/master/graph/badge.svg)](https://app.codecov.io/gh/neurogenomics/rworkflows)
  <br>
  <a href='https://app.codecov.io/gh/neurogenomics/rworkflows/tree/master' target='_blank'><img src='https://codecov.io/gh/neurogenomics/rworkflows/branch/master/graphs/sunburst.svg' title='Codecov sunburst graph' width='200' height='50' style='vertical-align: top;'></a>
  <a href='https://app.codecov.io/gh/neurogenomics/rworkflows/tree/master' target='_blank'><img src='https://codecov.io/gh/neurogenomics/rworkflows/branch/master/graphs/tree.svg' title='Codecov tree graph' width='200' height='50' style='vertical-align: top;'></a>
  <a href='https://app.codecov.io/gh/neurogenomics/rworkflows/tree/master' target='_blank'><img src='https://codecov.io/gh/neurogenomics/rworkflows/branch/master/graphs/icicle.svg' title='Codecov icicle graph' width='200' height='50' style='vertical-align: top;'></a>
  <h4>Authors: <i>Brian Schilder, Alan Murphy, Nathan Skene</i></h4>Creating new Docker file ==> /home/hornik/tmp/scratch/RtmpMuktiI/Dockerfile
  Using existing Docker file: /home/hornik/tmp/scratch/RtmpMuktiI/Dockerfile
  Docker file preview:
  Creating new Issue Template ==> /home/hornik/tmp/scratch/RtmpMuktiI/bug_report.md
  Creating new Issue Template ==> /home/hornik/tmp/scratch/RtmpMuktiI/feature_request.md
  Using existing Issue Template: /home/hornik/tmp/scratch/RtmpMuktiI/bug_report.md
  Issue Template preview:
  Using existing Issue Template: /home/hornik/tmp/scratch/RtmpMuktiI/feature_request.md
  Issue Template preview:
  Creating new README file ==> /home/hornik/tmp/scratch/RtmpMuktiI/README.Rmd
  Using existing README file: /home/hornik/tmp/scratch/RtmpMuktiI/README.Rmd
  README file preview:
  Creating new vignette file ==> /home/hornik/tmp/scratch/RtmpMuktiI/vignettes/docker.Rmd
  Using existing vignette file: /home/hornik/tmp/scratch/RtmpMuktiI/vignettes/docker.Rmd
  Vignette file preview:
  Creating new vignette file ==> /home/hornik/tmp/scratch/RtmpMuktiI/vignettes/mypackage.Rmd
  Saving workflow ==> /home/hornik/tmp/scratch/RtmpMuktiI/.github/workflows/rworkflows.yml
  Saving workflow ==> /home/hornik/tmp/scratch/RtmpMuktiI/rworkflows.yml
  Using existing workflow file: /home/hornik/tmp/scratch/RtmpMuktiI/rworkflows.yml
  Saving workflow ==> /home/hornik/tmp/scratch/RtmpMuktiI/rworkflows_static.yml
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 141 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-get_yaml.R:7:3'): get_yaml works ───────────────────────────────
  Error in `file(file, "rt", encoding = fileEncoding)`: cannot open the connection to 'https://github.com/neurogenomics/rworkflows/raw/master/action.yml'
  Backtrace:
      ▆
   1. ├─testthat::expect_type(...) at test-get_yaml.R:7:2
   2. │ └─testthat::quasi_label(enquo(object), arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─rworkflows:::get_yaml(template = "rworkflows_static")
   5.   └─yaml::read_yaml("https://github.com/neurogenomics/rworkflows/raw/master/action.yml")
   6.     └─base::file(file, "rt", encoding = fileEncoding)
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 141 ]
  Error: Test failures
  Execution halted