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--- re-building 'Bayesian_Diversification_Rate_Analysis.Rnw' using knitr
Loading required package: ape
Loading required package: coda
Loading required package: deSolve
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "Bayesian_Diversification_Rate_Analysis.tex" --max-iterations=20 -I "C:/r_packages/rinst/share/texmf/tex/latex" -I "C:/r_packages/rinst/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'Bayesian_Diversification_Rate_Analysis.Rnw' failed with diagnostics:
running 'texi2dvi' on 'Bayesian_Diversification_Rate_Analysis.tex' failed

LaTeX errors:
Diversification_Rate_Analysis.tex:284: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:296: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:306: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:316: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:333: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:522: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:539: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:553: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:604: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:645: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:656: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:669: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:682: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:703: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:706: Package xcolor Error: Undefined color `w
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Diversification_Rate_Analysis.tex:708: Package xcolor Error: Undefined color `w
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Diversification_Rate_Analysis.tex:710: Package xcolor Error: Undefined color `w
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Diversification_Rate_Analysis.tex:749: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:767: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:800: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:830: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:859: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:884: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:972: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:993: Package xcolor Error: Undefined color `f
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Diversification_Rate_Analysis.tex:1251: Package xcolor Error: 
--- failed re-building 'Bayesian_Diversification_Rate_Analysis.Rnw'

SUMMARY: processing the following file failed:
  'Bayesian_Diversification_Rate_Analysis.Rnw'

Error: Vignette re-building failed.
Execution halted