Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘interp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘InterpretMSSpectrum’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rdisop/libs/Rdisop.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rdisop/libs/Rdisop.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘intervals’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/intervals/libs/intervals.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/intervals/libs/intervals.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘IntervalSurgeon’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘inTrees’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: miscTools
Loading required package: maxLik
Error: package or namespace load failed for ‘maxLik’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘maxLik’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘IntrinioStockAPI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: yaImpute
Error: package or namespace load failed for ‘yaImpute’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/yaImpute/libs/yaImpute.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/yaImpute/libs/yaImpute.so: failed to map segment from shared object
Error: package ‘yaImpute’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘intRvals’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘intsvy’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘intubate.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘inum’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘investr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘ionr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ind_excl
> ### Title: Wrapper and scripts for indicator exclusion procedure
> ### Aliases: ind_excl
> 
> ### ** Examples
> 
> ### Create a scale-outcome set that violates IOn_ Only 2 indicators out of 8
> ### relate to the outcome, the others just relate to the 2 indicators. This setting is
> ### similar to the N5: Impulsiveness - BMI association in Vainik et al (2015) EJP paper.
> set.seed(466)
> a<-scale_sim(n=2500, to_n=2, tn_n=6)
> # Last 2 indicators have considerably higher correlation with the outcome
> ind_excl(a[[1]], outcome=a[[2]], pcrit=0.0037)
Error: .onLoad failed in loadNamespace() for 'mnormt', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mnormt/libs/mnormt.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object
Execution halted
Running examples in ‘iopsych-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: paretoXY
> ### Title: Computes data needed for a XY Pareto plot.
> ### Aliases: paretoXY
> 
> ### ** Examples
> 
> data(dls2007)
> dat <- dls2007
> r_mat <- dat[1:6, 2:7]
> x_col <- 1:4 
> y_col <- 5:6
> d_vec <- dat[1:4, 1]
> 
> paretoXY(r_mat=r_mat, x_col=1:4, y_col=5, d_vec=d_vec, pred_lower=c(0,0,0,0))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mco/libs/mco.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mco/libs/mco.so: failed to map segment from shared object
Calls: paretoXY ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: filenamer
Error: package or namespace load failed for ‘io’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘iotables’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘iotools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/iotools/libs/iotools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/iotools/libs/iotools.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘IPCAPS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ipc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/base64url/libs/base64url.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/base64url/libs/base64url.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: gdistance
Loading required package: raster
Loading required package: sp
Error: package or namespace load failed for ‘sp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘sp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘IPEC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ipfp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ipfp/libs/ipfp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ipfp/libs/ipfp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ipft’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘IPMRF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ipred’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/class/libs/class.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/class/libs/class.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘iprior’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘IPSUR.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘IPtoCountry’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘iptools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ipumsr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ipwErrorY’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nleqslv/libs/nleqslv.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nleqslv/libs/nleqslv.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ipw’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: miscTools
Error: package or namespace load failed for ‘IQCC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running ‘test-targetRunnerParallel.R’ [0s/0s]
  Running ‘testcapping.R’ [26s/15s]
  Running ‘testmisc.R’ [18s/9s]
  Running ‘testtargeval.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
  Running ‘testtime.R’ [2s/2s]
Running the tests in ‘tests/test-targetRunnerParallel.R’ failed.
Complete output:
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘irace-package.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘iRafNet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘IRATER’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘IRdisplay’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘iRegression’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘iRF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: IRISSeismic
Error: package or namespace load failed for ‘IRISSeismic’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Error: package ‘IRISSeismic’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘IRISSeismic’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘IRkernel’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘IROmiss’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Running examples in ‘irrNA-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: iccNA
> ### Title: Intraclass correlation coefficients (ICCs) - generalized for
> ###   randomly incomplete datasets
> ### Aliases: iccNA
> 
> ### ** Examples
> 
> # Example 1:
> data(ConsistNA)
> # ConsistNA exhibits missing values, a perfect consistency, and 
> # a moderate agreement between raters:
> ConsistNA
        Rater1 Rater2 Rater3 Rater4 Rater5 Rater6
Object1      1      3      5     NA     NA     NA
Object2      2      4      6     NA     NA     NA
Object3      3      5      7     NA     NA     NA
Object4     NA     NA     NA      5      3      1
Object5     NA     NA     NA      6      4      2
Object6     NA     NA     NA      7      5      3
> # Common ICC-algorithms fail, since each row as well as each 
> # column of ConsistNA exhibits unfilled cells and these missing 
> # data are omitted column-wise or row-wise:
> library(irr)
Loading required package: lpSolve
Error: package or namespace load failed for ‘lpSolve’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpSolve/libs/lpSolve.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpSolve/libs/lpSolve.so: failed to map segment from shared object
Error: package ‘lpSolve’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘irtDemo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/spatial/libs/spatial.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/spatial/libs/spatial.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘irtreliability’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘IRTShiny’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘isa2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ISAT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ISBF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ISBF/libs/ISBF.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ISBF/libs/ISBF.so: failed to map segment from shared object
Execution halted
Running examples in ‘isdals-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: alligator
> ### Title: Alligator food preference
> ### Aliases: alligator
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(alligator)
> library(VGAM)
Loading required package: stats4
Loading required package: splines
Error: package or namespace load failed for ‘VGAM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/VGAM/libs/VGAM.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/VGAM/libs/VGAM.so: failed to map segment from shared object
Execution halted
Running examples in ‘isdparser-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: isd_parse
> ### Title: Parse NOAA ISD/ISH data files
> ### Aliases: isd_parse
> 
> ### ** Examples
> 
> path <- system.file('extdata/104270-99999-1928.gz', package = "isdparser")
> 
> (res <- isd_parse(path))
<path>/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/isdparser/extdata/104270-99999-1928.gz

Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Calls: isd_parse ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘isdparser_vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘IsingFit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘isingLenzMC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/isingLenzMC/libs/isingLenzMC.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/isingLenzMC/libs/isingLenzMC.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘island’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/island/libs/island.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/island/libs/island.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘isni’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘isnullptr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/isnullptr/libs/isnullptr.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/isnullptr/libs/isnullptr.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: circular
Error: package or namespace load failed for ‘circular’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘circular’ could not be loaded
Execution halted
Running examples in ‘IsoplotR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mds
> ### Title: Multidimensional Scaling
> ### Aliases: mds mds.default mds.detritals
> 
> ### ** Examples
> 
> data(examples)
> mds(examples$DZ,nnlines=TRUE,pch=21,cex=5)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Calls: mds ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ISOpureR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Iso’:
 .onLoad failed in loadNamespace() for ‘Iso’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Iso/libs/Iso.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Iso/libs/Iso.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘IsoriX’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘IsoSpecR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘isotone’:
 .onLoad failed in loadNamespace() for ‘nnls’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnls/libs/nnls.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnls/libs/nnls.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ISOweek’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘isqg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ISR3’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ISR3/libs/ISR3.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ISR3/libs/ISR3.so: failed to map segment from shared object
Execution halted
Running examples in ‘ISwR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: melanom
> ### Title: Survival after malignant melanoma
> ### Aliases: melanom
> ### Keywords: datasets
> 
> ### ** Examples
> 
> require(survival)
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
> plot(survfit(Surv(days,status==1)~1,data=melanom))
Error in survfit(Surv(days, status == 1) ~ 1, data = melanom) : 
  could not find function "survfit"
Calls: plot
Execution halted
Depends: includes the non-default packages:
  ‘partitions’ ‘VGAM’ ‘MASS’ ‘ape’ ‘apTreeshape’ ‘geiger’ ‘gtools’
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘iterpc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gmp/libs/gmp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gmp/libs/gmp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘itree’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/itree/libs/itree.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/itree/libs/itree.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ITRLearn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/kernlab/libs/kernlab.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/kernlab/libs/kernlab.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ITRSelect’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/slam/libs/slam.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/slam/libs/slam.so: failed to map segment from shared object
Execution halted
Running examples in ‘itunesr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getReviews
> ### Title: Extract Reviews from iTunes App Store
> ### Aliases: getReviews
> 
> ### ** Examples
> 
> getReviews(742044692,'in',1)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Calls: getReviews ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: gmm
Loading required package: sandwich
Error: package or namespace load failed for ‘sandwich’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘sandwich’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ivmodel’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ivtools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘iWISA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘jaatha-evolution.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jaccard’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jackstraw’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘JADE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Execution halted
Running examples in ‘james.analysis-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: readJAMES
> ### Title: Read analysis results from JSON file
> ### Aliases: readJAMES
> 
> ### ** Examples
> 
> # get path to raw JSON file included in package distribution
> json.file <- system.file("extdata", "james.json", package = "james.analysis")
> 
> # read results from file
> james <- readJAMES(json.file)
Error: .onLoad failed in loadNamespace() for 'rjson', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rjson/libs/rjson.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rjson/libs/rjson.so: failed to map segment from shared object
Execution halted
Running examples in ‘janeaustenr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: austen_books
> ### Title: Tidy data frame of Jane Austen's 6 completed, published novels
> ### Aliases: austen_books
> 
> ### ** Examples
> 
> 
> library(dplyr)
Error: package or namespace load failed for ‘dplyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Running examples in ‘janitor-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: adorn_ns
> ### Title: Add underlying Ns to a tabyl displaying percentages.
> ### Aliases: adorn_ns
> 
> ### ** Examples
> 
> 
> mtcars %>%
+   tabyl(am, cyl) %>%
+   adorn_percentages("col") %>%
+   adorn_pct_formatting() %>%
+   adorn_ns(position = "front")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: %>% ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘janitor.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jarbes’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘JavaGD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/JavaGD/libs/JavaGD.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/JavaGD/libs/JavaGD.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘JBTools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jcext’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jcolors’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Jdmbs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jdx’:
 .onLoad failed in loadNamespace() for ‘jdx’, details:
  call: NULL
  error: .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jetset’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: fPortfolio
Loading required package: timeDate
Loading required package: timeSeries
Loading required package: fBasics
Error: package or namespace load failed for ‘fBasics’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/spatial/libs/spatial.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/spatial/libs/spatial.so: failed to map segment from shared object
Error: package ‘fBasics’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: jiebaRD
Error: package or namespace load failed for ‘jiebaR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jipApprox’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘JMcmprsk’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jmcm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jmdem’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/VGAM/libs/VGAM.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/VGAM/libs/VGAM.so: failed to map segment from shared object
Execution halted
Running examples in ‘jmdl-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getJMDL
> ### Title: Extract or Get Generalized Components from a Fitted Joint Mean
> ###   Correlation Model
> ### Aliases: getJMDL getJMDL.jmdlMod
> 
> ### ** Examples
> 
> 
> mydat <- toydata
> fit <- jmdl(Y|id|time ~ X, data = mydat, q = 2, family ='Bernoulli')
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: jmdl ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘JMI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jmvconnect’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jmvcore’:
 .onLoad failed in loadNamespace() for ‘rjson’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rjson/libs/rjson.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rjson/libs/rjson.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jmv’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jocre’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jointDiag’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jointDiag/libs/jointDiag.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jointDiag/libs/jointDiag.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jointseg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/matrixStats/libs/matrixStats.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/matrixStats/libs/matrixStats.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘joinXL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jomo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: openssl
Error: package or namespace load failed for ‘openssl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/openssl/libs/openssl.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/openssl/libs/openssl.so: failed to map segment from shared object
Error: package ‘openssl’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘JOUSBoost’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jpeg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jpeg/libs/jpeg.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jpeg/libs/jpeg.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jpmesh’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: jpmesh
Error: package or namespace load failed for ‘jpmesh’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘jpmesh’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jqr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘JRF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/JRF/libs/JRF.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/JRF/libs/JRF.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘jrvFinance-demo.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jsonify’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jsonld’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jsonlite’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jsonstat’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jsonvalidate’:
 .onLoad failed in loadNamespace() for ‘jsonvalidate’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jsr223’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘js’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jstor’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jsTree’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jtGWAS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jtools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jubilee’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: magrittr
Error: package or namespace load failed for ‘jug’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘JuliaCall’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘junctions’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: pbdZMQ
Error: package or namespace load failed for ‘pbdZMQ’:
 .onLoad failed in loadNamespace() for ‘pbdZMQ’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pbdZMQ/libs/pbdZMQ.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pbdZMQ/libs/pbdZMQ.so: failed to map segment from shared object
Error: package ‘pbdZMQ’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘junr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘jwutil’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kableExtra’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kamila’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kangar00’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/CompQuadForm/libs/CompQuadForm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/CompQuadForm/libs/CompQuadForm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kantorovich’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/slam/libs/slam.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/slam/libs/slam.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: affy
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Loading required package: Biobase
Error: package or namespace load failed for ‘Biobase’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Biobase/libs/Biobase.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Biobase/libs/Biobase.so: failed to map segment from shared object
Error: package ‘Biobase’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: PresenceAbsence
Loading required package: maptools
Loading required package: sp
Error: package or namespace load failed for ‘sp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘sp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tuneR
Error: package or namespace load failed for ‘tuneR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘tuneR’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: pbdMPI
Error: package or namespace load failed for ‘pbdMPI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlecuyer/libs/rlecuyer.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlecuyer/libs/rlecuyer.so: failed to map segment from shared object
Error: package ‘pbdMPI’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kde1d’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kdecopula’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘kdensity-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: kdensity
> ### Title: Parametrically guided kernel density estimation
> ### Aliases: kdensity
> 
> ### ** Examples
> 
> ## Use gamma kernels to model positive data, the concentration of
> ## theophylline
> 
> concentration = Theoph$conc + 0.001
> plot(kdensity(concentration, start = "gamma", kernel = "gamma", adjust = 1/3),
+      ylim = c(0, 0.15), lwd = 2, main = "Concentration of theophylline")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Calls: plot ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kdetrees’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kdevine’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kdtools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kehra’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kelvin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Bessel/libs/Bessel.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Bessel/libs/Bessel.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kendallRandomWalks’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Kendall’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Kendall/libs/Kendall.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Kendall/libs/Kendall.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: keras
Error: package or namespace load failed for ‘keras’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘keras’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘keras’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kerasR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘KERE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KERE/libs/KERE.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KERE/libs/KERE.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kernDeepStackNet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kerndwd’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/kerndwd/libs/kerndwd.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/kerndwd/libs/kerndwd.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kernelboot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kernelFactory’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/randomForest/libs/randomForest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/randomForest/libs/randomForest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘KernelKnn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kernlab’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/kernlab/libs/kernlab.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/kernlab/libs/kernlab.so: failed to map segment from shared object
Execution halted
Running examples in ‘kernplus-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: kp.pwcurv
> ### Title: Predict Wind Power Output by Using a Multivariate Power Curve
> ### Aliases: kp.pwcurv
> 
> ### ** Examples
> 
> head(windpw)
      V      D      rho          I         Sb      y
1  6.95 173.60 1.159438 0.14244604 0.08469058  40.42
2  5.60  24.72 1.258566 0.08571429 0.06847489  14.44
3  9.17 270.60 1.177190 0.10359869 0.40546263  64.02
4 10.41 171.50 1.141209 0.07780980 0.46597980  77.96
5 17.11  48.11 1.230691 0.08065459 0.14205708 101.41
6  9.85 294.10 1.242199 0.07817259 0.15405456  73.07
> 
> 
> ### Power curve estimation.
> 
> # By using a single input of wind speed.
> pwcurv.est <- kp.pwcurv(windpw$y, windpw$V)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so: failed to map segment from shared object
Calls: kp.pwcurv ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kernscr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘KernSmoothIRT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘KernSmooth’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: SparseM
Error: package or namespace load failed for ‘SparseM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SparseM/libs/SparseM.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SparseM/libs/SparseM.so: failed to map segment from shared object
Error: package ‘SparseM’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘keyholder’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Running examples in ‘keyplayer-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fragment
> ### Title: Compute the Fragmentation Centrality Score in a Netwrok
> ### Aliases: fragment
> 
> ### ** Examples
> 
> # Create a 5x5 weighted and directed adjacency matrix, where edge values
> # represent the strength of tie
> W <- matrix(
+   c(0,1,3,0,0,
+     0,0,0,4,0,
+     1,1,0,2,0,
+     0,0,0,0,3,
+     0,2,0,0,0),
+     nrow=5, ncol=5, byrow = TRUE)
> 
> # Transform the edge value to distance interpretaion
> A <- W
> A[W!=0] <- 1/W[W!=0]
> 
> # List the fragmentation centrality scores for every node
> fragment(A)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Calls: fragment ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘keypress’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/keypress/libs/keypress.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/keypress/libs/keypress.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘keyring’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/keyring/libs/keyring.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/keyring/libs/keyring.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Avoiding_plain_text_passwords_in_R_with_keyringr.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘KFAS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KFAS/libs/KFAS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KFAS/libs/KFAS.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘introduction.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘KFKSDS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KFKSDS/libs/KFKSDS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KFKSDS/libs/KFKSDS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘KGode’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kgschart’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnet/libs/nnet.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnet/libs/nnet.so: failed to map segment from shared object
Execution halted
Running examples in ‘khroma-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: colour
> ### Title: Colour palette
> ### Aliases: colour color
> 
> ### ** Examples
> 
> library("scales")
Error: package or namespace load failed for ‘scales’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘ktx.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kimisc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kineticF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kirby21.base’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/git2r/libs/git2r.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/git2r/libs/git2r.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kirby21.fmri’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/git2r/libs/git2r.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/git2r/libs/git2r.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kirby21.t1’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/git2r/libs/git2r.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/git2r/libs/git2r.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kitagawa’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Bessel/libs/Bessel.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Bessel/libs/Bessel.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kknn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: xtable
Loading required package: psychometric
Loading required package: multilevel
Loading required package: nlme
Error: package or namespace load failed for ‘nlme’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘nlme’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kmcudaR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kmed’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kmer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kmeRs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/S4Vectors/libs/S4Vectors.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/S4Vectors/libs/S4Vectors.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kmi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: clv
Loading required package: cluster
Error: package or namespace load failed for ‘cluster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Error: package ‘cluster’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘KnapsackSampling’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpSolve/libs/lpSolve.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpSolve/libs/lpSolve.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘knitcitations’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘lTab.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘knitrBootstrap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/markdown/libs/markdown.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/markdown/libs/markdown.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘example_progress_bars.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running ‘run-all.R’ [0s/0s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
  > library(testit)
  > test_pkg("knitr")
  Error from tryCatchList(expr, classes, parentenv, handlers) 
  Error in dyn.load(file, DLLpath = DLLpath, ...) : 
    unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
  Calls: test_pkg ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘knit_print.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘knncat’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/knncat/libs/knncat.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/knncat/libs/knncat.so: failed to map segment from shared object
Execution halted
Running examples in ‘knnp-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: knn_distances
> ### Title: Distances matrixes computation and saving in files with a
> ###   maximum of columns
> ### Aliases: knn_distances
> 
> ### ** Examples
> 
> knn_distances(AirPassengers, 1:3, threads = 2, file = "AirPassengers", cols = 2)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: knn_distances ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Running examples in ‘knockoff-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: create.fixed
> ### Title: Fixed-X knockoffs
> ### Aliases: create.fixed
> 
> ### ** Examples
> 
> p=100; n=200; k=15
> X = matrix(rnorm(n*p),n)
> nonzero = sample(p, k)
> beta = 5.5 * (1:p %in% nonzero)
> y = X %*% beta + rnorm(n)
> 
> # Basic usage with default arguments
> result = knockoff.filter(X, y, knockoffs=create.fixed)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: knockoff.filter ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Knoema’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: fossil
Loading required package: sp
Error: package or namespace load failed for ‘sp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘sp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kntnr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘KODAMA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kofnGA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: pheatmap
Error: package or namespace load failed for ‘pheatmap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘pheatmap’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kohonen’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kokudosuuchi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kolmim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/kolmim/libs/kolmim.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/kolmim/libs/kolmim.so: failed to map segment from shared object
Execution halted
Running examples in ‘komadown-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: scrartcl
> ### Title: Rmarkdown Template for koma-scrartcl
> ### Aliases: scrartcl
> 
> ### ** Examples
> 
> 
> library(rmarkdown)
Error: package or namespace load failed for ‘rmarkdown’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘scrartcl.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘konfound’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘KoNLP’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: koRpus
Loading required package: sylly
Error: package or namespace load failed for ‘koRpus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Error: package ‘koRpus’ could not be loaded
Execution halted
Packages suggested but not available for checking:
  ‘koRpus.lang.de’ ‘koRpus.lang.es’ ‘koRpus.lang.fr’ ‘koRpus.lang.it’
  ‘koRpus.lang.ru’

Package which this enhances but not available for checking: ‘rkward’
Loading this package had a fatal error status code 1
Loading log:
Loading required package: sylly
Error: package or namespace load failed for ‘koRpus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘KoulMde’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kpcalg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘kpmt-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: kpmt
> ### Title: Known Population Median Test
> ### Aliases: kpmt
> 
> ### ** Examples
> 
> data(genefeat)
> data(GO0007186)
> res  <-  kpmt( pop = genefeat , obs = GO0007186 )
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/matrixStats/libs/matrixStats.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/matrixStats/libs/matrixStats.so: failed to map segment from shared object
Calls: kpmt ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: clues
Error: package or namespace load failed for ‘clues’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/clues/libs/clues.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/clues/libs/clues.so: failed to map segment from shared object
Error: package ‘clues’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘KraljicMatrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kriging’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/kriging/libs/kriging.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/kriging/libs/kriging.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘KRIG’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘KRIS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘KRMM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘KScorrect’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘KSD-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: KSD
> ### Title: Estimate Kernelized Stein Discrepancy (KSD)
> ### Aliases: KSD
> 
> ### ** Examples
> 
> # Pass in a dataset generated by Gaussian distribution,
> # use pryr package to pass in score function
> model <- gmm()
> X <- rgmm(model, n=100)
> score_function = pryr::partial(scorefunctiongmm, model=model)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: :: ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘KSEAapp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > ##
  > ##  Unit testing file
  > ##
  > ##  Created by Daniel Rodriguez Perez on 7/12/2014.
  > ##
  > ##  Copyright (c) 2014 Daniel Rodriguez Perez.
  > ##
  > ##  This program is free software: you can redistribute it and/or modify
  > ##  it under the terms of the GNU General Public License as published by
  > ##  the Free Software Foundation, either version 3 of the License, or
  > ##  (at your option) any later version.
  > ##
  > ##  This program is distributed in the hope that it will be useful,
  > ##  but WITHOUT ANY WARRANTY; without even the implied warranty of
  > ##  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  > ##  GNU General Public License for more details.
  > ##
  > ##  You should have received a copy of the GNU General Public License
  > ##  along with this program.  If not, see <http://www.gnu.org/licenses/>
  > ## 
  > 
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘KSgeneral’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ks’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: pks
Loading required package: sets
Error: package or namespace load failed for ‘sets’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/sets/libs/sets.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/sets/libs/sets.so: failed to map segment from shared object
Error: package ‘sets’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘kstMatrix.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘ktsolve-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ktsolve
> ### Title: Configurable function for solving families of nonlinear
> ###   equations Version: 1.0
> ### Aliases: ktsolve
> 
> ### ** Examples
> 
> zfunc<-function(x) {
+ 	z<-vector()
+ z[1]<- 4*var1 -3*var2 +5*var3
+ z[2]<-8*var1 +5*var2 -2*var3
+ z
+ }
> 
>  known=list(var2=5)
>  guess=list(var1=2,var3=0)
>  solv1 <- ktsolve(zfunc,known=known,guess=guess)
Error: package or namespace load failed for ‘BB’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Error in BBsolve(c(var1 = 2, var3 = 0), function (x)  : 
  could not find function "BBsolve"
Calls: ktsolve -> do.call
Execution halted
Running examples in ‘kulife-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: write.xml
> ### Title: Write a data frame in XML format
> ### Aliases: write.xml
> ### Keywords: file
> 
> ### ** Examples
> 
> data(trees)
> write.xml(trees, file="mydata.xml")
Loading required package: XML
Error: package or namespace load failed for ‘XML’:
 .onLoad failed in loadNamespace() for 'XML', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Error in write.xml(trees, file = "mydata.xml") : 
  package XML must be installed
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kutils’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/foreign/libs/foreign.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/foreign/libs/foreign.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kvh’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kyotil’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/kyotil/libs/kyotil.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/kyotil/libs/kyotil.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kza’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/kza/libs/kza.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/kza/libs/kza.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘kzfs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘l0ara’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘L0Learn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘l1kdeconv’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘L1pack’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/L1pack/libs/L1pack.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/L1pack/libs/L1pack.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘labelled’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘labelrank’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pdist/libs/pdist.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pdist/libs/pdist.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘label.switching’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpSolve/libs/lpSolve.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpSolve/libs/lpSolve.so: failed to map segment from shared object
Execution halted
Running ‘tests-all.R’ [0s/0s]
Running the tests in ‘tests/tests-all.R’ failed.
Complete output:
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘labelVector.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lacm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/statmod/libs/statmod.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/statmod/libs/statmod.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LadR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/L1pack/libs/L1pack.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/L1pack/libs/L1pack.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LaF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LAGOSNE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘laGP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Execution halted
Running examples in ‘Lahman-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Appearances
> ### Title: Appearances table
> ### Aliases: Appearances
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(Appearances)
> library("dplyr")
Error: package or namespace load failed for ‘dplyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rLakeAnalyzer
Error: package or namespace load failed for ‘LakeMetabolizer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lakemorpho’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘laketemps’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘lamme-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LAM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lamW’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LANDD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘landest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘landpred’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘landsat8’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘landscapemetrics’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘landscapeR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘landscapetools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: util_binarize
> ### Title: Binarize continuous raster values
> ### Aliases: util_binarize
> 
> ### ** Examples
> 
> breaks <- c(0.3, 0.5)
> (binary_maps <- util_binarize(fbmmap, breaks))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Calls: util_binarize ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Langevin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘languagelayeR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘languageserver’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/languageserver/libs/languageserver.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/languageserver/libs/languageserver.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lans2r’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Running examples in ‘LaplacesDemon-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cond.plot
> ### Title: Conditional Plots
> ### Aliases: cond.plot
> ### Keywords: Plot
> 
> ### ** Examples
> 
> library(LaplacesDemon)
> x <- rnorm(1000)
> y <- runif(1000)
> z <- rcat(1000, rep(1/4,4))
> cond.plot(x, y, z, Style="smoothscatter")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so: failed to map segment from shared object
Calls: cond.plot ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘largeList’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/largeList/libs/largeList.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/largeList/libs/largeList.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lars’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lars/libs/lars.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lars/libs/lars.so: failed to map segment from shared object
Execution halted
Running examples in ‘lass0-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: lass0
> ### Title: Variable selection for linear regression with Lasso-Zero
> ### Aliases: lass0
> 
> ### ** Examples
> 
> #### EXAMPLE 1: fast example with 5x10 input matrix and a small number 
> #### (MCrep = 50) of Monte Carlo replications for computing QUT.
> 
> set.seed(201)
> ## design matrix
> n <- 5
> p <- 10
> X <- matrix(rnorm(n*p), n, p)
> ## sparse vector
> S0 <- 1:2 # support
> beta0 <- rep(0, p)
> beta0[S0] <- 2
> ## response:
> y <- X[, S0] %*% beta0[S0] + rnorm(n)
> ## lasso-zero:
> lass0.obj <- lass0(X, y, alpha = 0.05, MCrep = 50)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpSolve/libs/lpSolve.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpSolve/libs/lpSolve.so: failed to map segment from shared object
Calls: lass0 ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lasso2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lasso2/libs/lasso2.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lasso2/libs/lasso2.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LassoBacktracking’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lassopv’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lars/libs/lars.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lars/libs/lars.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lassoshooting’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lassoshooting/libs/lassoshooting.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lassoshooting/libs/lassoshooting.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LassoSIR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Laterality’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘later’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘latex2exp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘latticeDensity’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LatticeDesign’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/LatticeDesign/libs/LatticeDesign.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/LatticeDesign/libs/LatticeDesign.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lavaanPlot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lavaan’:
 .onLoad failed in loadNamespace() for ‘mnormt’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mnormt/libs/mnormt.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lavaan.shiny’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lava’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: lava
Error: package or namespace load failed for ‘lava’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lava’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lawn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lazyeval’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lazy’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lazy/libs/lazy.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lazy/libs/lazy.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lazyrmd’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘lazysql-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: date_between
> ### Title: Create SQL string to select date between two given dates
> ### Aliases: date_between
> 
> ### ** Examples
> 
> date1 <- as.Date("2016-02-22")
> date2 <- as.Date("2016-02-11")
> 
> # SQL expression for a date range
> (sql_expr1 <- lazysql::date_between("STD_1", c(date1, date2)))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Calls: <Anonymous> ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Running examples in ‘lazyWeave-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ComparisonTable
> ### Title: Comparison Tables
> ### Aliases: ComparisonTable catconttable cattable conttable
> 
> ### ** Examples
> 
> 
> #Read in the delivery dataset from the lazyWeave package
> data(Delivery)
> 
> #Use conttable to summarize maternal age, ga weeks, weight (grams) 
> #and grava by delivery type.  The dataset name is specified under the "data="
> #option, the variables of interest are listed under "vars=", and the K-level by variable 
> #is specified under "byVar=".
> 
> #Default is to report mean and bootstrapped 95% CI for mean.  Tests of location are by 
> #default either Wilcoxon rank sum (K=2) or Kruskal-Wallis (K>2) rank sum.  The "seed="
> #option allows for reproducibility by setting the seed for getting bootstrapped samples.
> 
> d_type.contable <- conttable(data=Delivery,
+                              vars=c("maternal.age", "ga.weeks", "wt.gram", "grava"),
+                                     byVar="delivery.type")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/survival/libs/survival.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/survival/libs/survival.so: failed to map segment from shared object
Calls: conttable ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lbfgsb3c’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: numDeriv
Error: package or namespace load failed for ‘lbfgsb3’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lbfgsb3/libs/lbfgsb3.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lbfgsb3/libs/lbfgsb3.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lbfgs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: actuar
Error: package or namespace load failed for ‘actuar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/expint/libs/expint.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/expint/libs/expint.so: failed to map segment from shared object
Error: package ‘actuar’ could not be loaded
Execution halted
Running examples in ‘lbreg-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: HL_test
> ### Title: Hosmer-Lemeshow Goodness of Fit Test
> ### Aliases: HL_test
> 
> ### ** Examples
> 
> require(lbreg)
> 
> # data preparation
> data(PCS)
> w <- PCS
> w <- w[,-1]
> w$race <- factor(w$race)
> w$dpros <- factor(w$dpros)
> w$dcaps <- factor(w$dcaps)
> 
> fm <- lbreg(tumor ~ ., data=w)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Calls: lbreg ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LBSPR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LCAextend’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: poLCA
Loading required package: scatterplot3d
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LCF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lclGWAS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LCMCR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/LCMCR/libs/LCMCR.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/LCMCR/libs/LCMCR.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: fdapace
Error: package or namespace load failed for ‘fdapace’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘fdapace’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lcyanalysis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ldamatch’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lda’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lda/libs/lda.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lda/libs/lda.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: lvec
Error: package or namespace load failed for ‘lvec’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘lvec’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ldatuning’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘details.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ldbod’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RANN/libs/RANN.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RANN/libs/RANN.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ldbounds’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘LDheatmap-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GIMAP5.CEU
> ### Title: Example data set for LDheatmap
> ### Aliases: GIMAP5.CEU
> ### Keywords: dataset
> 
> ### ** Examples
> 
> require(snpStats) # for the SnpMatrix data structure
Loading required package: snpStats
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/survival/libs/survival.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/survival/libs/survival.so: failed to map segment from shared object
Failed with error:  ‘package ‘survival’ could not be loaded’
> data(GIMAP5.CEU)
> LDheatmap(GIMAP5.CEU$snp.data,GIMAP5.CEU$snp.support$Position)
Loading required package: snpStats
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/survival/libs/survival.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/survival/libs/survival.so: failed to map segment from shared object
Failed with error:  ‘package ‘survival’ could not be loaded’
Error in .requirePackage(package) : 
  unable to find required package ‘snpStats’
Calls: LDheatmap ... .extendsForS3 -> extends -> getClassDef -> .requirePackage
Execution halted
Error in re-building vignettes:
  ...

Error: processing vignette ‘LDheatmap.Rnw’ failed with diagnostics:
 chunk 3 (label = Original) 
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ldhmm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘LDPD-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: LDPD-package
> ### Title: Probability of Default Calibration
> ### Aliases: LDPD-package LDPD
> ### Keywords: credit risk probability of default PD calibration low default
> ###   porfolios PD calibration
> 
> ### ** Examples
> 
> # PD calibration using Multi-period Pluto and Tasche approach
> portfolio <- c(10,20,30,40,10)
> defaults <- c(1,2,0,0,0)
> PTMultiPeriodPD(portfolio, defaults, 0.3, cor.St = 0.3, kT = 5, kNS = 1000, conf.interval = 0.5)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Calls: PTMultiPeriodPD ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: GrassmannOptim
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Running examples in ‘LDRTools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: AOP
> ### Title: Function to Average Orthogonal Projection Matrices
> ### Aliases: AOP
> ### Keywords: multivariate
> 
> ### ** Examples
> 
> ## Ex.1
> ##
> library(dr)
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘leabRa’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘leaderCluster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/leaderCluster/libs/leaderCluster.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/leaderCluster/libs/leaderCluster.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘leafletCN’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: leaflet
Error: package or namespace load failed for ‘leaflet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘leaflet’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘leaflet.minicharts’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘leaflet.opacity-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: addHigherOpacity
> ### Title: Add higher opacity control to map
> ### Aliases: addHigherOpacity
> 
> ### ** Examples
> 
> # Libraries
> library(leaflet)
Error: package or namespace load failed for ‘leaflet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘leaflet-opacity.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘leaflet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘leafletR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘leanpubr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: alabama
Loading required package: numDeriv
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: sva
Loading required package: mgcv
Loading required package: nlme
Error: package or namespace load failed for ‘nlme’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘nlme’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...

Error: processing vignette ‘LEAP_Vignette.Rnw’ failed with diagnostics:
 chunk 10 
Error : package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘leaps’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/leaps/libs/leaps.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/leaps/libs/leaps.so: failed to map segment from shared object
Execution halted
Running examples in ‘LeArEst-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: areaest
> ### Title: Performs area estimation of the numerically described object in
> ###   plane.
> ### Aliases: areaest
> 
> ### ** Examples
> 
> # load a data set representing the ellipse with additive Gaussian error,
> # run area estimation on it, and plot the results
> inputfile <- system.file("extdata", "ellipse_3_4_0.1_gauss.txt", package = "LeArEst")
> inputdata <- read.table(inputfile)
> area <- areaest(inputdata, error = "gauss", var.est = "ML", plot = TRUE,
+                 slicing = "hv", representation = "ellipse")
Time for chopping: 0.1137426Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/geigen/libs/geigen.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/geigen/libs/geigen.so: failed to map segment from shared object
Calls: areaest ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘learningCurve’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: magick
Error: package or namespace load failed for ‘magick’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘magick’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘learnPopGen’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘installation.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘learnr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ledger’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lefse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘LEGIT-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: rGE.IMLEGIT
> ### Title: Gene-Environment correlation estimation and testing of IMLEGIT
> ###   models
> ### Aliases: rGE.IMLEGIT
> 
> ### ** Examples
> 
> # Note: These examples don't have G and E correlation so the model fit doesn't change 
> # but this shows how to use the rGE function
> train = example_3way_3latent(500, 1, seed=777)
> fit = IMLEGIT(train$data, train$latent_var, y ~ G*E*Z)
Converged in 8 iterations
> # If we assume Z not to be an "environment"
> fit_rGE1 = rGE(fit, y ~ G*E, train$latent_var, 2, 1)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Matrix/libs/Matrix.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Matrix/libs/Matrix.so: failed to map segment from shared object
Calls: rGE ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘GxE_testing.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: xtable
Loading required package: RColorBrewer
Loading required package: gdata
Error: package or namespace load failed for ‘gdata’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Error: package ‘gdata’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lemon’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LendingClub’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lessR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/leaps/libs/leaps.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/leaps/libs/leaps.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lexicon’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LexisNexisTools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lexRankr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lfda’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LFDREmpiricalBayes’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/matrixStats/libs/matrixStats.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/matrixStats/libs/matrixStats.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lfl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lga’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lgcp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/spatstat.utils/libs/spatstat.utils.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/spatstat.utils/libs/spatstat.utils.so: failed to map segment from shared object
Execution halted
Running examples in ‘lg-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: clg
> ### Title: The locally Gaussian conditional density estimator
> ### Aliases: clg
> 
> ### ** Examples
> 
>   # A 3 variate example
>   x <- cbind(rnorm(100), rnorm(100), rnorm(100))
> 
>   # Generate the lg-object with default settings
>   lg_object <- lg_main(x)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/logspline/libs/logspline.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/logspline/libs/logspline.so: failed to map segment from shared object
Calls: lg_main ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lhs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lhs/libs/lhs.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lhs/libs/lhs.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘libamtrack’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/libamtrack/libs/libamtrack.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/libamtrack/libs/libamtrack.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘libcoin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LiblineaR.ACF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/LiblineaR.ACF/libs/LiblineaR.ACF.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/LiblineaR.ACF/libs/LiblineaR.ACF.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LiblineaR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/LiblineaR/libs/LiblineaR.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/LiblineaR/libs/LiblineaR.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘libsoc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/libsoc/libs/libsoc.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/libsoc/libs/libsoc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘libstableR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LICORS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dotCall64/libs/dotCall64.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dotCall64/libs/dotCall64.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lidR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lifecontingencies’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: TraMineR
Error: package or namespace load failed for ‘TraMineR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘TraMineR’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lifelogr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘liftr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘liger’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘overview.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Depends: includes the non-default packages:
  ‘sn’ ‘moments’ ‘BB’ ‘Bolstad2’ ‘optimx’ ‘Rmpfr’
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: sn
Loading required package: stats4
Error: package or namespace load failed for ‘sn’:
 .onLoad failed in loadNamespace() for ‘mnormt’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mnormt/libs/mnormt.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object
Error: package ‘sn’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: cond
Loading required package: statmod
Error: package or namespace load failed for ‘statmod’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/statmod/libs/statmod.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/statmod/libs/statmod.so: failed to map segment from shared object
Error: package ‘statmod’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘likelihoodExplore’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: DEoptim
Loading required package: parallel
Error: package or namespace load failed for ‘DEoptim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/DEoptim/libs/DEoptim.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/DEoptim/libs/DEoptim.so: failed to map segment from shared object
Error: package ‘DEoptim’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lilikoi’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lime’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: limSolve
Error: package or namespace load failed for ‘limSolve’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpSolve/libs/lpSolve.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpSolve/libs/lpSolve.so: failed to map segment from shared object
Error: package ‘limSolve’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘limSolve’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpSolve/libs/lpSolve.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpSolve/libs/lpSolve.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘examples.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lindia’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘LindleyPowerSeries-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plindleybinomial
> ### Title: LindleyBinomial
> ### Aliases: plindleybinomial dlindleybinomial hlindleybinomial
> ###   qlindleybinomial rlindleybinomial
> 
> ### ** Examples
> 
> set.seed(1)
> lambda = 1
> theta = 0.5
> n = 10
> m = 10
> x <- seq(from = 0.1,to = 6,by = 0.5)
> p <- seq(from = 0.1,to = 1,by = 0.1)
> plindleybinomial(x, lambda, theta, m, log.p = FALSE)
 [1] 0.004934075 0.049678330 0.136518173 0.262124731 0.407046198 0.548561053
 [7] 0.671053079 0.768323016 0.840970756 0.892915270 0.928920232 0.953326041
> dlindleybinomial(x, lambda, theta, m)
 [1] 0.05482159 0.12927535 0.21691667 0.27850622 0.29323788 0.26756183
 [7] 0.22044837 0.16895531 0.12302445 0.08638152 0.05909803 0.03968168
> hlindleybinomial(x, lambda, theta, m)
 [1] 0.05509343 0.13603325 0.25121163 0.37744350 0.49453748 0.59268664
 [7] 0.67016396 0.72927102 0.77359639 0.80666513 0.83143254 0.85018878
> qlindleybinomial(p, lambda, theta, m)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: qlindleybinomial ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LindleyR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘linearQ’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘linear.tools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘linemap-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getgrid
> ### Title: Transform a Polygon Layer to a Grid
> ### Aliases: getgrid
> 
> ### ** Examples
> 
> library(linemap)
> library(sf)
Error: package or namespace load failed for ‘sf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lineup’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lineup/libs/lineup.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lineup/libs/lineup.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lingtypology’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘linguisticsdown’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘link2GI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘LinkageMapView-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: lmv.linkage.plot
> ### Title: LinkageMapView plotting function
> ### Aliases: lmv.linkage.plot
> 
> ### ** Examples
> 
> 
> ## take a cross object from r/qtl and produce linkage map
> ## on chr 1,4,6,15
> 
> library(qtl)
Error: package or namespace load failed for ‘qtl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/qtl/libs/qtl.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/qtl/libs/qtl.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘LinkageMapView.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘LinkedMatrix-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ColumnLinkedMatrix-class
> ### Title: A Class for Linking Matrices by Columns or Rows.
> ### Aliases: ColumnLinkedMatrix-class ColumnLinkedMatrix
> ###   RowLinkedMatrix-class RowLinkedMatrix
> 
> ### ** Examples
> 
> # Create various matrix-like objects that correspond in dimensions
> m1 <- ff::ff(initdata = rnorm(50), dim = c(5, 10))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bit/libs/bit.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bit/libs/bit.so: failed to map segment from shared object
Calls: :: ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘proxfun.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: svgViewR
Error: package or namespace load failed for ‘svgViewR’:
 .onLoad failed in loadNamespace() for ‘rjson’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rjson/libs/rjson.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rjson/libs/rjson.so: failed to map segment from shared object
Error: package ‘svgViewR’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘linkspotter’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘linl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘linpk-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: generateETA
> ### Title: Generate individual random effects from a multivariate normal
> ###   distribution.
> ### Aliases: generateETA
> 
> ### ** Examples
> 
> omegaLT <- c(0.123, 0.045, 0.678)
> generateETA(10, omegaLT)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Calls: generateETA ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘linpk-intro.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Running examples in ‘LinRegInteractive-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fxInteractive.lme
> ### Title: Interactive Interpretation of Linear Mixed-Effects Models
> ### Aliases: fxInteractive.lme
> 
> ### ** Examples
> 
> require("nlme")
Loading required package: nlme
Error: package or namespace load failed for ‘nlme’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
> data("Orthodont")
Warning in data("Orthodont") : data set ‘Orthodont’ not found
> LMEmod <- lme(distance ~ age + Sex, data = Orthodont, random = ~ age | Subject)
Error in lme(distance ~ age + Sex, data = Orthodont, random = ~age | Subject) : 
  could not find function "lme"
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LINselect’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lintools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lintools/libs/lintools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lintools/libs/lintools.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lintr’:
 .onLoad failed in loadNamespace() for ‘lintr’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: enviPick
Loading required package: shiny
Error: package or namespace load failed for ‘shiny’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘shiny’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘liquidSVM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/liquidSVM/libs/liquidSVM.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/liquidSVM/libs/liquidSVM.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘listless’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘listviewer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘liteq’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running ‘simpleTests.R’ [0s/0s]
Running the tests in ‘tests/simpleTests.R’ failed.
Complete output:
  > 
  > ## These tests were suggested by a user on OS X, and then promptly
  > ## failed on OS X per CRAN -- so we now make this conditional on Linux
  > ## where it is known to work
  > 
  > if (unname(Sys.info()["sysname"]) == "Linux") {
  +     library(littler)
  +     stopifnot(identical(littler:::test(), "4"))   # default test is cat(2+2)
  +     stopifnot(as.numeric(littler:::test('cat(R.version$year)')) >= 2015)  
  + }
  The littler package provides 'r' as a binary.
  See 'vignette("littler-examples") for some illustrations.
  You could link to the 'r' binary installed in
  '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/littler/bin/r'
  from '/usr/local/bin' in order to use 'r' for scripting.
  Error: identical(littler:::test(), "4") is not TRUE
  In addition: Warning message:
  In system2(r(), c("-e", shQuote(src)), stdout = TRUE, stderr = TRUE) :
    running command ''/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/littler/bin/r' -e 'cat(2 + 2)' 2>&1' had status 126
  Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘littler-examples.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘livechatR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘live’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ljr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ljr/libs/ljr.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ljr/libs/ljr.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mlr
Loading required package: ParamHelpers
Error: package or namespace load failed for ‘ParamHelpers’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Error: package ‘ParamHelpers’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: scatterplot3d
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lllcrc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/VGAM/libs/VGAM.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/VGAM/libs/VGAM.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LLM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LLSR’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lmem.qtler’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lmeNBBayes’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lmeNBBayes/libs/lmeNBBayes.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lmeNBBayes/libs/lmeNBBayes.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: numDeriv
Loading required package: statmod
Error: package or namespace load failed for ‘statmod’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/statmod/libs/statmod.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/statmod/libs/statmod.so: failed to map segment from shared object
Error: package ‘statmod’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LMERConvenienceFunctions’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lmeresampler’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lmeVarComp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lmeVarComp/libs/lmeVarComp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lmeVarComp/libs/lmeVarComp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: stats4
Loading required package: nlme
Error: package or namespace load failed for ‘nlme’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘nlme’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: lmmlasso
Loading required package: emulator
Loading required package: mvtnorm
Error: package or namespace load failed for ‘mvtnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘mvtnorm’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lmmpar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lmm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lmm/libs/lmm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lmm/libs/lmm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lmomco’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/goftest/libs/goftest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/goftest/libs/goftest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: lmom
Error: package or namespace load failed for ‘lmom’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lmom/libs/lmom.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lmom/libs/lmom.so: failed to map segment from shared object
Error: package ‘lmom’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lmom’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lmom/libs/lmom.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lmom/libs/lmom.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lmPerm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lmPerm/libs/lmPerm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lmPerm/libs/lmPerm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: genefilter
Error: package or namespace load failed for ‘genefilter’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/S4Vectors/libs/S4Vectors.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/S4Vectors/libs/S4Vectors.so: failed to map segment from shared object
Error: package ‘genefilter’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lmSubsets’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lmSubsets/libs/lmSubsets.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lmSubsets/libs/lmSubsets.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lmSupport’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Running examples in ‘lmvar-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: alias.lmvar_no_fit
> ### Title: Aliased coefficients in an 'lmvar' object
> ### Aliases: alias.lmvar_no_fit
> 
> ### ** Examples
> 
> # Create matrix columns
> my_intercept = rep(1, 20)
> v1 = c(rep(1, 10), rep(0, 10))
> v2 = c(rep(0, 10), rep(1, 10))
> 
> # Create model matrices
> X = cbind(my_intercept, v1, v2)
> X_s = X
> 
> # Rename the last column of the model matrix 'X_s' to make this example more clear.
> colnames(X_s)[3] = "v3"
> 
> # Create response vector
> y = rnorm(20)
> 
> # Perform fit
> fit = lmvar(y, X, X_s)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/zoo/libs/zoo.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/zoo/libs/zoo.so: failed to map segment from shared object
Calls: lmvar ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lmviz’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘LN0SCIs-tutorial.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LncFinder’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LNIRT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lobstr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LocalControl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘localIV-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: average
> ### Title: Estimation of Average Causal Effects from Marginal Treatment
> ###   Effects
> ### Aliases: average
> 
> ### ** Examples
> 
> mte_fit <- mte(selection = d ~ x + z, outcome = y ~ x,
+   method = "localIV", data = toydata)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so: failed to map segment from shared object
Calls: mte ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LocFDRPois’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘locfit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘locpol’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/locpol/libs/locpol.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/locpol/libs/locpol.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘loder’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/loder/libs/loder.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/loder/libs/loder.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lodGWAS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘logbin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LogConcDEAD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘logconcens’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/logconcens/libs/logconcens.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/logconcens/libs/logconcens.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: logcondens
Error: package or namespace load failed for ‘logcondens’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so: failed to map segment from shared object
Error: package ‘logcondens’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘logcondens’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so: failed to map segment from shared object
Execution halted
Running examples in ‘loggit-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_logs
> ### Title: Return Log File as an R Object
> ### Aliases: get_logs
> 
> ### ** Examples
> 
> setLogFile(file.path(tempdir(), "loggit.json"), confirm = FALSE)
> message("Test log message")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: message ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘loggle’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘logiBin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘logistf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LogisticDx’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘logisticPCA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/logisticPCA/libs/logisticPCA.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/logisticPCA/libs/logisticPCA.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘logisticRR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnet/libs/nnet.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnet/libs/nnet.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘logitchoice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/logitchoice/libs/logitchoice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/logitchoice/libs/logitchoice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LogitNet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/LogitNet/libs/LogitNet.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/LogitNet/libs/LogitNet.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘logitnorm.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘logKDE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘loglognorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/loglognorm/libs/loglognorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/loglognorm/libs/loglognorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: gnm
Error: package or namespace load failed for ‘gnm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnet/libs/nnet.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnet/libs/nnet.so: failed to map segment from shared object
Error: package ‘gnm’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lognorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘LogrankA-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: LogrankA-package
> ### Title: Logrank Test for Aggregated Survival Data
> ### Aliases: LogrankA-package
> ### Keywords: survival
> 
> ### ** Examples
> 
> library(survival)
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘logspline’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/logspline/libs/logspline.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/logspline/libs/logspline.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lokern’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lokern/libs/lokern.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lokern/libs/lokern.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lolR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘longCatEDA-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: longCatPlot
> ### Title: Plotting of lc objects
> ### Aliases: longCatPlot
> 
> ### ** Examples
> 
> # Illustrate longCatPlot with the legend outside the plot
> par(mfrow=c(1,1), bg='cornsilk3', mar=c(5.1, 4.1, 4.1, 8.1), xpd=TRUE)
> cols <- longCatPlot(
+   longCat(example3),
+   legendBuffer=0,
+   main='Horizontal Line Plot')
> legend(7.1, 100, legend=1:5, col=cols, lty=1, lwd=2)
> par(bg='transparent', mar = c(5, 4, 4, 2) + 0.1, xpd=FALSE)
> 
> ### visualizing multivariate data: 3 items at 4 time points
> library(MASS)
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘longclust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/longclust/libs/longclust.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/longclust/libs/longclust.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘longROC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘longurl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: grid
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘Looping.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘loo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/matrixStats/libs/matrixStats.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/matrixStats/libs/matrixStats.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘loose.rock’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lorec’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lorec/libs/lorec.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lorec/libs/lorec.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: magrittr
Error: package or namespace load failed for ‘lorentz’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lori’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LOST’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/minpack.lm/libs/minpack.lm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/minpack.lm/libs/minpack.lm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lowmemtkmeans’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LowRankQP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/LowRankQP/libs/LowRankQP.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/LowRankQP/libs/LowRankQP.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LowWAFOMNX’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LowWAFOMSobol’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘lpbrim-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: findModules
> ### Title: Find modules
> ### Aliases: findModules
> 
> ### ** Examples
> 
> M <- matrix(rbinom(100, 1, 0.3), ncol=10)
> M <- M[rowSums(M)>0, colSums(M)>0]
> mod <- findModules(M, iter=2, sparse=FALSE)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: findModules ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Running examples in ‘LPCM-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: gaia
> ### Title: Gaia data
> ### Aliases: gaia
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(gaia)
> s <- sample(nrow(gaia),200)
> library(lattice)
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lpdensity’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: SDMTools
Error: package or namespace load failed for ‘SDMTools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SDMTools/libs/SDMTools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SDMTools/libs/SDMTools.so: failed to map segment from shared object
Error: package ‘SDMTools’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lpirfs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: apcluster
Error: package or namespace load failed for ‘apcluster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘apcluster’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lplyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lpme’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lpmodeler’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/slam/libs/slam.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/slam/libs/slam.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LPM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LPower’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lpridge’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpridge/libs/lpridge.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpridge/libs/lpridge.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LPR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lpSolveAPI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpSolveAPI/libs/lpSolveAPI.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpSolveAPI/libs/lpSolveAPI.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lpSolve’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpSolve/libs/lpSolve.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpSolve/libs/lpSolve.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LPStimeSeries’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/LPStimeSeries/libs/LPStimeSeries.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/LPStimeSeries/libs/LPStimeSeries.so: failed to map segment from shared object
Execution halted
Running examples in ‘LPTime-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: EyeTrack.sample
> ### Title: EyeTrack.sample: Coordinates of eye-trajectory
> ### Aliases: EyeTrack.sample
> ### Keywords: datasets
> 
> ### ** Examples
> 
> library(lattice)
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘LPWC.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lqmm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lqr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/spatstat.utils/libs/spatstat.utils.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/spatstat.utils/libs/spatstat.utils.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LRcontrast’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/LRcontrast/libs/LRcontrast.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/LRcontrast/libs/LRcontrast.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lrgs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lrmest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: LS2W
Loading required package: wavethresh
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: lsa
Loading required package: SnowballC
Error: package or namespace load failed for ‘SnowballC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SnowballC/libs/SnowballC.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SnowballC/libs/SnowballC.so: failed to map segment from shared object
Error: package ‘SnowballC’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LSAmitR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: SnowballC
Error: package or namespace load failed for ‘SnowballC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SnowballC/libs/SnowballC.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SnowballC/libs/SnowballC.so: failed to map segment from shared object
Error: package ‘SnowballC’ could not be loaded
Execution halted
Running examples in ‘lsbs-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: hdrbs
> ### Title: Calculate the optiaml bandwidth matrix for highest density
> ###   region estimation
> ### Aliases: hdrbs
> 
> ### ** Examples
> 
> X <- matrix(rnorm(100),ncol=2)
> xrange <- c(-2.5,2.5)
> yrange <- c(-2.5,2.5)
> hdrbs(X,0.1,xrange,yrange,0.1)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so: failed to map segment from shared object
Calls: hdrbs ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: LICORS
Error: package or namespace load failed for ‘LICORS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dotCall64/libs/dotCall64.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dotCall64/libs/dotCall64.so: failed to map segment from shared object
Error: package ‘LICORS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lsei’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lsei/libs/lsei.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lsei/libs/lsei.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lsl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lslx’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: emmeans
Error: package or namespace load failed for ‘emmeans’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘emmeans’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lspartition’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘lspline.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘LSTS-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: LS.whittle
> ### Title: Whittle estimator to Locally Stationary Time Series
> ### Aliases: LS.whittle whittle estimator
> ### Keywords: whittle loglik estimator timeseries
> 
> ### ** Examples
> 
> ## Require "rdatamarket"
> library(rdatamarket)
Loading required package: zoo
Error: package or namespace load failed for ‘zoo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘zoo’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mcmc
Error: package or namespace load failed for ‘mcmc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mcmc/libs/mcmc.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mcmc/libs/mcmc.so: failed to map segment from shared object
Error: package ‘mcmc’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ltmle’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/matrixStats/libs/matrixStats.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/matrixStats/libs/matrixStats.so: failed to map segment from shared object
Execution halted
Running examples in ‘LTRCtrees-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ICtree
> ### Title: Fit a survival tree for interval-censored survival data
> ### Aliases: ICtree
> 
> ### ** Examples
> 
> library(interval)
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘survival’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ltsa’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ltsa/libs/ltsa.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ltsa/libs/ltsa.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lubridate’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lucid’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lucr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘lue-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: LUE_BIOMASS
> ### Title: Light Use Efficiency Model to Estimate Biomass
> ### Aliases: LUE_BIOMASS
> ### Keywords: datasets
> 
> ### ** Examples
> 
> ## Not run: 
> ##D ## load the data
> ##D data(fpar)
> ##D data(par1)
> ##D data(tmin)
> ##D LUE_BIOMASS(fpar,par1,tmin,-2,12,3)
> ## End(Not run)
> library(raster)
Loading required package: sp
Error: package or namespace load failed for ‘sp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘sp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: magrittr
Error: package or namespace load failed for ‘Luminescence’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LumReader’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘lutz-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: tz_lookup_coords
> ### Title: Lookup time zones of lat/long pairs
> ### Aliases: tz_lookup_coords
> 
> ### ** Examples
> 
> tz_lookup_coords(42, -123)
Warning: Using 'fast' method. This can cause inaccuracies in timezones
  near boundaries away from populated ares. Use the 'accurate'
  method if accuracy is more important than speed.
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: tz_lookup_coords ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘intro-luzlogr.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lvec’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Error: package or namespace load failed for ‘LVGP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lhs/libs/lhs.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lhs/libs/lhs.so: failed to map segment from shared object
Execution halted
Running examples in ‘lvplot-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: geom_lv
> ### Title: Side-by-side LV boxplots with ggplot2.
> ### Aliases: GeomLv StatLv geom_lv scale_fill_lv stat_lv
> ### Keywords: datasets
> 
> ### ** Examples
> 
> library(ggplot2)
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘LW1949’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lwgeom’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lxb’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lxb/libs/lxb.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lxb/libs/lxb.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘lymphclon’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘m2b’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘M2SMF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mable’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mable/libs/mable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mable/libs/mable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘machina’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MachineShop’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘machQA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: etl
Loading required package: dplyr
Error: package or namespace load failed for ‘dplyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Error: package ‘dplyr’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘maddison_project_database.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘maditr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘madness’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: magclass
Error: package or namespace load failed for ‘magclass’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘magclass’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mafs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘magclass’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘magicaxis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘magicfor.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘magick’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MAGNAMWAR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘magree’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/magree/libs/magree.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/magree/libs/magree.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘magrittr.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mailR’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘majesticR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘demo.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘makeParallel-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: inferGraph
> ### Title: Infer Task Dependency Graph
> ### Aliases: inferGraph inferGraph,character-method
> ###   inferGraph,language-method inferGraph,expression-method
> 
> ### ** Examples
> 
> g <- inferGraph(parse(text = "
+   a <- 1
+   b <- 2
+   c <- a + b
+   d <- b * c
+ "))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/graph/libs/BioC_graph.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/graph/libs/BioC_graph.so: failed to map segment from shared object
Calls: inferGraph ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘concepts.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: MALDIquant
Error: package or namespace load failed for ‘MALDIquant’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MALDIquant/libs/MALDIquant.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MALDIquant/libs/MALDIquant.so: failed to map segment from shared object
Error: package ‘MALDIquant’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MALDIquant’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MALDIquant/libs/MALDIquant.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MALDIquant/libs/MALDIquant.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MAMSE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MAMSE/libs/MAMSE.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MAMSE/libs/MAMSE.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mandelbrot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mandelbrot/libs/mandelbrot.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mandelbrot/libs/mandelbrot.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object

Error: processing vignette ‘Mangrove.Rnw’ failed with diagnostics:
 chunk 19 
Error : package ‘Matrix’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘manhattanly’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: NLP
Loading required package: tm
Error: package or namespace load failed for ‘tm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘tm’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘manipulateWidget’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ManlyMix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ManlyMix/libs/ManlyMix.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ManlyMix/libs/ManlyMix.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MANOVA.RM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mapdeck’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mapedit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mapi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘mapplots-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: draw.shape
> ### Title: Draw shapefiles in an existing plot
> ### Aliases: draw.shape
> 
> ### ** Examples
> 
> library(shapefiles)
Loading required package: foreign
Error: package or namespace load failed for ‘foreign’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/foreign/libs/foreign.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/foreign/libs/foreign.so: failed to map segment from shared object
Error: package ‘foreign’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mapr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mapsapi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘maps’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/maps/libs/maps.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/maps/libs/maps.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mapsRinteractive’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mapview’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tcltk
Loading required package: leaps
Error: package or namespace load failed for ‘leaps’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/leaps/libs/leaps.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/leaps/libs/leaps.so: failed to map segment from shared object
Error: package ‘leaps’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: cmrutils
Loading required package: chron
Error: package or namespace load failed for ‘chron’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/chron/libs/chron.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/chron/libs/chron.so: failed to map segment from shared object
Error: package ‘chron’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘marcher’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/minpack.lm/libs/minpack.lm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/minpack.lm/libs/minpack.lm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: shape
Error: package or namespace load failed for ‘marelac’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MarginalMediation’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘margins’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘marinespeed’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘markdown’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/markdown/libs/markdown.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/markdown/libs/markdown.so: failed to map segment from shared object
Execution halted
Packages required but not available: ‘CausalImpact’ ‘bsts’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: yaml
Error: package or namespace load failed for ‘yaml’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/yaml/libs/yaml.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/yaml/libs/yaml.so: failed to map segment from shared object
Error: package ‘yaml’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘markophylo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘markovchain’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MarkowitzR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘marmap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘marqLevAlg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/marqLevAlg/libs/marqLevAlg.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/marqLevAlg/libs/marqLevAlg.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MARSS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Running examples in ‘MARX-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: aic
> ### Title: The Akaike information criterion (AIC) function
> ### Aliases: aic
> ### Keywords: selection
> 
> ### ** Examples
> 
> data <- sim.marx(c('t',1,1), c('t',1,1),100,0.5,0.4,0.3)
> aic(data$y, data$x,8)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/spatial/libs/spatial.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/spatial/libs/spatial.so: failed to map segment from shared object
Calls: aic ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...

Attaching package: ‘maSAE’

The following object is masked from ‘package:stats’:

    predict


Error: processing vignette ‘maSAE.Rnw’ failed with diagnostics:
 chunk 11 
Error : package or namespace load failed for ‘nlme’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mase’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MaskJointDensity’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so: failed to map segment from shared object
Execution halted
Running examples in ‘mason-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: add_settings
> ### Title: Add analysis settings to the blueprint
> ### Aliases: add_settings add_settings.gee_bp add_settings.cor_bp
> ###   add_settings.glm_bp add_settings.pls_bp add_settings.t.test_bp
> 
> ### ** Examples
> 
> 
> design(iris, 'gee') %>%
+  add_settings('Species', family = binomial('logit'), conf.int = FALSE)
# Analysis for gee is still under construction. 
# Showing data right now:
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: <Anonymous> ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘mason.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MatchingFrontier’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘matchingMarkets’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MatchIt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MatchItSE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MatchLinReg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘matchMulti’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘basicSyntax.rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mateable’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mathpix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘matie’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘matlabr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘matlib’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MatManlyMix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MatManlyMix/libs/MatManlyMix.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MatManlyMix/libs/MatManlyMix.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MAT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MatrixCorrelation’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MatrixLDA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MatrixModels’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘matrixNormal’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: TTR
Error: package or namespace load failed for ‘TTR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘TTR’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘matrixStats’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/matrixStats/libs/matrixStats.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/matrixStats/libs/matrixStats.so: failed to map segment from shared object
Execution halted
Running examples in ‘matrixTests-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bartlett
> ### Title: Bartlett test
> ### Aliases: bartlett row_bartlett col_bartlett
> 
> ### ** Examples
> 
> col_bartlett(iris[,1:4], iris$Species)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/matrixStats/libs/matrixStats.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/matrixStats/libs/matrixStats.so: failed to map segment from shared object
Calls: col_bartlett ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Running examples in ‘matR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: distx
> ### Title: Calculate distances with optional grouping and other features
> ### Aliases: distx distx.matrix distx.biom
> 
> ### ** Examples
> 
> ####  Euclidean distance between samples based on raw counts
> distx (xx1)
             mgm4440463.3 mgm4440464.3 mgm4441679.3 mgm4441680.3 mgm4441682.3
mgm4440464.3     213.8691                                                    
mgm4441679.3    5132.2519    5294.9315                                       
mgm4441680.3    3414.9600    3576.2005    1789.3591                          
mgm4441682.3    4611.6559    4771.5652     762.3582    1259.3403             
mgm4441695.3    1598.0792    1754.6854    4082.8998    2484.0405    3620.1369
mgm4441696.3    1591.7971    1750.5079    3998.8938    2391.2340    3525.9532
             mgm4441695.3
mgm4440464.3             
mgm4441679.3             
mgm4441680.3             
mgm4441682.3             
mgm4441695.3             
mgm4441696.3     395.3087
> 
> ####  alternate dissimilarity measure
> distx (xx1, method="bray-curtis")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ecodist/libs/ecodist.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ecodist/libs/ecodist.so: failed to map segment from shared object
Calls: distx ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mau’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MAVE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MAVIS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: corpcor
Loading required package: foreach
Loading required package: multcomp
Loading required package: mvtnorm
Error: package or namespace load failed for ‘mvtnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘mvtnorm’ could not be loaded
Execution halted
Running examples in ‘maxadjAUC-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: maxadjAUC
> ### Title: Maximizing the Covariate-Adjusted AUC
> ### Aliases: maxadjAUC
> 
> ### ** Examples
> 
>   ## Don't show: 
>   expit <- function(x){
+     exp(x)/(1+exp(x))
+   }
> 
>   set.seed(1)
> 
>   covar <- rep(c(1:2),each=30)
> 
>   x1 <- rnorm(60,0,rep(runif(2,0.8,1.2),each=30))
>   x2 <- rnorm(60,0,rep(runif(2,0.8,1.2),each=30))
> 
>   covint <- rep(runif(2,-1.5,1.5), each=30)
> 
>   y <- rbinom(60,1,expit(covint + 1*x1 - 1*x2))
>   X <- cbind(x1,x2)
> 
>   output <- maxadjAUC(outcome=y, predictors=X, covariate=covar, initialval="rGLM",
+                       approxh = 1/3, conditional=FALSE, tolval = 1e-2, stepsz = 1e-2)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/kyotil/libs/kyotil.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/kyotil/libs/kyotil.so: failed to map segment from shared object
Calls: maxadjAUC ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘MaxentVariableSelection.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘maximin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: miscTools
Error: package or namespace load failed for ‘maxLik’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘maxmatching’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Running examples in ‘maxnet-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: maxnet
> ### Title: Maxent over glmnet
> ### Aliases: maxnet predict.maxnet maxnet.formula
> ###   maxnet.default.regularization
> ### Keywords: Maxent glmnet
> 
> ### ** Examples
> 
> library(maxnet)
> data(bradypus)
> p <- bradypus$presence
> data <- bradypus[,-1]
> mod <- maxnet(p, data)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Calls: maxnet ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘maxstat’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/exactRankTests/libs/exactRankTests.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/exactRankTests/libs/exactRankTests.so: failed to map segment from shared object
Execution halted
Running examples in ‘maxTPR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: maxTPR
> ### Title: Maximizing the TPR for a Specified FPR
> ### Aliases: maxTPR
> 
> ### ** Examples
> 
> set.seed(4)
> x1 <- rnorm(400)
> x2 <- rnorm(400)
> y <- rbinom(400,1,exp(x1+x2)/(1+exp(x1+x2)))
> data <- data.frame(y,x1,x2)
> maxTPR(data,0.2)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/kyotil/libs/kyotil.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/kyotil/libs/kyotil.so: failed to map segment from shared object
Calls: maxTPR ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Running examples in ‘MazamaCoreUtils-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: manageCache
> ### Title: Manage the size of a cache
> ### Aliases: manageCache
> 
> ### ** Examples
> 
> # Create a cache directory and fill it with 1.6 MB of data
> CACHE_DIR <- tempdir()
> write.csv(matrix(1,400,500), file=file.path(CACHE_DIR,'m1.csv'))
> write.csv(matrix(2,400,500), file=file.path(CACHE_DIR,'m2.csv'))
> write.csv(matrix(3,400,500), file=file.path(CACHE_DIR,'m3.csv'))
> write.csv(matrix(4,400,500), file=file.path(CACHE_DIR,'m4.csv'))
> for (file in list.files(CACHE_DIR, full.names=TRUE)) {
+   print(file.info(file)[,c(1,6)])
+ }
                         size               atime
/tmp/RtmpYcIQFa/m1.csv 405687 2018-12-17 05:22:59
                         size               atime
/tmp/RtmpYcIQFa/m2.csv 405687 2018-12-17 05:22:59
                         size               atime
/tmp/RtmpYcIQFa/m3.csv 405687 2018-12-17 05:23:00
                         size               atime
/tmp/RtmpYcIQFa/m4.csv 405687 2018-12-17 05:23:00
> 
> # Remove files based on access time until we get under 1 MB
> manageCache(CACHE_DIR, extensions='csv', maxCacheSize=1, sortBy='atime')
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Calls: manageCache ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘cache-management.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘MazamaWebUtils-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cgiRequest
> ### Title: Create a CGI Request Object
> ### Aliases: cgiRequest
> 
> ### ** Examples
> 
> # Example borrowed from webutils::parse_query
> q <- "foo=1%2B1%3D2&bar=yin%26yang"
> req <- cgiRequest(q)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Calls: cgiRequest ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # Copyright 2017-2017 Steven E. Pav. All Rights Reserved.
  > # Author: Steven E. Pav
  > 
  > # This file is part of mazealls.
  > #
  > # mazealls is free software: you can redistribute it and/or modify
  > # it under the terms of the GNU Lesser General Public License as published by
  > # the Free Software Foundation, either version 3 of the License, or
  > # (at your option) any later version.
  > #
  > # mazealls is distributed in the hope that it will be useful,
  > # but WITHOUT ANY WARRANTY; without even the implied warranty of
  > # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  > # GNU Lesser General Public License for more details.
  > #
  > # You should have received a copy of the GNU Lesser General Public License
  > # along with mazealls.  If not, see <http://www.gnu.org/licenses/>.
  > 
  > # env var:
  > # nb: 
  > # see also:
  > # todo:
  > # changelog: 
  > #
  > # Created: 2017-10-03
  > # Copyright: Steven E. Pav, 2017-2017
  > # Author: Steven E. Pav
  > # Comments: Steven E. Pav
  > 
  > # because Hadley says it should be like this.
  > # see https://github.com/hadley/devtools/wiki/Testing
  > 
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mazeGen’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MBA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MBA/libs/MBA.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MBA/libs/MBA.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mbgraphic’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MBHdesign’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘mbir-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: logistf
Error: package or namespace load failed for ‘logistf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘logistf’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Loading required package: stabs
Error: package or namespace load failed for ‘mboost’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MBSGS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/truncnorm/libs/truncnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/truncnorm/libs/truncnorm.so: failed to map segment from shared object
Execution halted
Running examples in ‘MBTAr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Tdailymetrics
> ### Title: Query daily performance statistics.
> ### Aliases: Tdailymetrics
> 
> ### ** Examples
> 
>   ## Authenticate:
>   ## Don't show: 
>   test_key <- "Zt0g4Tkp2kaLNxoKFXI_Kg"
>   
> ## End(Don't show)
>   mykey <- NULL
>   mykey <- assign("mykey", value = test_key, envir = .GlobalEnv)
>   ## use your own key from http://realtime.mbta.com/Portal/ instead of the test key
> 
>   Tdailymetrics(route_id="Red", # metrics for the Red Line
+ from_date=(Sys.Date()-8), # 8 days ago
+ to_date=Sys.Date()-1, # to yesterday (a full week of performance)
+ api_key = mykey) # user-defined API key
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Calls: Tdailymetrics ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mBvs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mBvs/libs/mBvs.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mBvs/libs/mBvs.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MC2toPath’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RNetCDF/libs/RNetCDF.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RNetCDF/libs/RNetCDF.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mcca’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnet/libs/nnet.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnet/libs/nnet.so: failed to map segment from shared object
Execution halted
Running examples in ‘mccf1-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mccf1
> ### Title: MCC (Matthews correlation coefficient) - F1
> ### Aliases: mccf1
> 
> ### ** Examples
> 
> response <- c(rep(1, 1000), rep(0, 10000))
> set.seed(2017)
> predictor <- c(rbeta(300, 12, 2), rbeta(700, 3, 4), rbeta(10000, 2, 3))
> x <- mccf1(response, predictor)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Calls: mccf1 ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mccmeiv’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MCDA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/slam/libs/slam.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/slam/libs/slam.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MCDM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: trust
Error: package or namespace load failed for ‘mcemGLM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mcglm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mcGlobaloptim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rngWELL/libs/rngWELL.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rngWELL/libs/rngWELL.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MCI2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mclcar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dotCall64/libs/dotCall64.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dotCall64/libs/dotCall64.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MCL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mclustcomp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mclust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mclust/libs/mclust.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mclust/libs/mclust.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: MCMCglmm
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MCMCprecision’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mcmc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mcmc/libs/mcmc.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mcmc/libs/mcmc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mcmcr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mcmcse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘MCMCvis-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MCMCtrace
> ### Title: Trace and density plots from MCMC output
> ### Aliases: MCMCtrace
> 
> ### ** Examples
> 
> #Load data
> data(MCMC_data)
> 
> #Traceplots for all 'beta' parameters - a pdf of the traceplots is generated by default
> MCMCtrace(MCMC_data, params = 'beta', pdf = FALSE)
> 
> #Traceplots (individual density lines for each chain) just for 'beta[1]'
> #'params' takes regular expressions when ISB = FALSE, square brackets must be escaped with '\\'
> MCMCtrace(MCMC_data, params = 'beta\\[1\\]', ISB = FALSE, ind = TRUE, pdf = FALSE)
> 
> #Plot prior on top of posterior and calculate prior/posterior overlap (PPO) just for 'beta[1]'
> #'params' takes regular expressions when ISB = FALSE, square brackets must be escaped with '\\'
> PR <- rnorm(15000, 0, 32)
> MCMCtrace(MCMC_data, params = 'beta\\[1\\]', ISB = FALSE, priors = PR, pdf = FALSE)
Warning in MCMCtrace(MCMC_data, params = "beta\\[1\\]", ISB = FALSE, priors = PR,  :
  Number of samples in prior is greater than number of total or specified iterations (for all chains) for specified parameter. Only last 10500 iterations will be used.
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: MCMCtrace ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘MCMCvis.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mcompanion’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mco’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mco/libs/mco.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mco/libs/mco.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mcPAFit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MCPAN’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mcparallelDo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mcr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mcr/libs/mcr.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mcr/libs/mcr.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MCSim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Depends: includes the non-default packages:
  ‘lattice’ ‘locfit’ ‘maptools’ ‘quantreg’ ‘RANN’ ‘SparseM’
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mdendro’:
 .onLoad failed in loadNamespace() for ‘mdendro’, details:
  call: NULL
  error: .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MDFS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MDFS/libs/MDFS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MDFS/libs/MDFS.so: failed to map segment from shared object
Execution halted
Running examples in ‘mdir.logrank-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mdir.logrank
> ### Title: Two-sample multiple-direction log rank test
> ### Aliases: mdir.logrank
> 
> ### ** Examples
> 
> library(coin)
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘survival’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mdmb’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MDMR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/CompQuadForm/libs/CompQuadForm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/CompQuadForm/libs/CompQuadForm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mdpeer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ellipse

Attaching package: ‘ellipse’

The following object is masked from ‘package:graphics’:

    pairs

Loading required package: mnormt
Error: package or namespace load failed for ‘mnormt’:
 .onLoad failed in loadNamespace() for ‘mnormt’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mnormt/libs/mnormt.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object
Error: package ‘mnormt’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MDSMap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘mds-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: define_analyses
> ### Title: Assess & Save MD-PMS Analyses Definitions
> ### Aliases: define_analyses
> 
> ### ** Examples
> 
> # Device-Events
> de <- deviceevent(
+   data_frame=maude,
+   time="date_received",
+   device_hierarchy=c("device_name", "device_class"),
+   event_hierarchy=c("event_type", "medical_specialty_description"),
+   key="report_number",
+   covariates=c("region"),
+   descriptors="_all_")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/parsedate/libs/parsedate.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/parsedate/libs/parsedate.so: failed to map segment from shared object
Calls: deviceevent ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘mds_intro.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mdsr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘mdsstat_intro.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Running examples in ‘mdw-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: asym.v.e
> ### Title: Asymptotic variance for maximum entropy weights
> ### Aliases: asym.v.e
> ### Keywords: weighting
> 
> ### ** Examples
> 
> library(MASS)
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘meanr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/meanr/libs/meanr.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/meanr/libs/meanr.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Loading required package: wavethresh
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘meanShiftR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/meanShiftR/libs/meanShiftR.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/meanShiftR/libs/meanShiftR.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘meaRtools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘measuRing’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/png/libs/png.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/png/libs/png.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MEclustnet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: meteoland
Loading required package: sp
Error: package or namespace load failed for ‘sp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘sp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MediaK’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Mediana’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘medicalrisk’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘cost-report-analysis.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘medmod’:
 .onLoad failed in loadNamespace() for ‘rjson’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rjson/libs/rjson.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rjson/libs/rjson.so: failed to map segment from shared object
Execution halted
Depends: includes the non-default packages:
  ‘seqinr’ ‘pcaMethods’ ‘Matrix’ ‘ROCR’ ‘Hmisc’ ‘KernSmooth’ ‘seqLogo’
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘meetupapi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
mefa 3.2-7 	 2016-01-11

Error: processing vignette ‘mefa.Rnw’ failed with diagnostics:
 chunk 38 
Error : package or namespace load failed for 'MASS' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: SKAT
Error: package or namespace load failed for ‘SKAT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SKAT/libs/SKAT.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SKAT/libs/SKAT.so: failed to map segment from shared object
Error: package ‘SKAT’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Loading required package: igraph
Error: package or namespace load failed for ‘igraph’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Error: package ‘igraph’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘meifly’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘mekko-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: barmekko
> ### Title: Create a bar mekko plot.
> ### Aliases: barmekko
> 
> ### ** Examples
> 
> library(ggplot2)
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘mekko-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘meltt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: gWidgetsRGtk2
Loading required package: RGtk2
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RGtk2/libs/RGtk2.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RGtk2/libs/RGtk2.so: failed to map segment from shared object
Error: package or namespace load failed for ‘RGtk2’:
 .onLoad failed in loadNamespace() for ‘RGtk2’, details:
  call: install_all()
  error: This platform is not yet supported by the automatic installer. Please install GTK+ manually, if necessary. See: http://www.gtk.org
Error: package ‘RGtk2’ could not be loaded
In addition: Warning message:
Failed to load RGtk2 dynamic library, attempting to install it. 
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘memapp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘meme’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: showtext
Loading required package: sysfonts
Error: package or namespace load failed for ‘sysfonts’:
 .onLoad failed in loadNamespace() for ‘sysfonts’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/sysfonts/libs/sysfonts.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/sysfonts/libs/sysfonts.so: failed to map segment from shared object
Error: package ‘sysfonts’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘memgene’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘memoise’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘memo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘memor’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mem’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘memuse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/memuse/libs/memuse.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/memuse/libs/memuse.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MendelianRandomization’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/robustbase/libs/robustbase.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/robustbase/libs/robustbase.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MEPDF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘merlin.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘messaging’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘metaBLUE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘metaBMA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MetaboList’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MetabolomicsBasics’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MetaboLouise’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MetaboQC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: taxa
Error: package or namespace load failed for ‘taxa’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Error: package ‘taxa’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MetaComp’:
 .onLoad failed in loadNamespace() for ‘Cairo’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Cairo/libs/Cairo.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Cairo/libs/Cairo.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rmeta
Loading required package: gsl
Error: package or namespace load failed for ‘gsl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gsl/libs/gsl.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gsl/libs/gsl.so: failed to map segment from shared object
Error: package ‘gsl’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MetaCycle’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnet/libs/nnet.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnet/libs/nnet.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘metaDigitise.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘metadynminer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘metafolio’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘metafuse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘metagear’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘metagen’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MetaheuristicFPA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘metaheur’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MetaIntegrator’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tcltk
Loading required package: igraph
Error: package or namespace load failed for ‘igraph’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Error: package ‘igraph’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MetaLonDA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MetamapsDB’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘metaMA’:
 .onLoad failed in loadNamespace() for ‘limma’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/limma/libs/limma.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/limma/libs/limma.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘metamisc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘metaMix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘metaplot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘metaplotr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: crosshairs
> ### Title: Creates a Cross-hairs Plot.
> ### Aliases: cross-hairs crosshairs
> 
> ### ** Examples
> 
> ## Not run: 
> ##D # Load and attach metaplotr package to the Global Environment
> ##D library(metaplotr)
> ##D 
> ##D # Remove all variables in the .GlobalEnv, effectively clearing .GlobalEvn
> ##D rm(list = ls())
> ##D 
> ##D # Find out more about the data set from Ferguson and Brannick (2012)
> ##D # help("FergusonBrannick2012")
> ##D 
> ##D # You can check out help file of the \code{crosshairs} function.
> ##D # help(crosshairs)
> ## End(Not run)
> 
> # Basic usage of the \code{crosshairs} function.
> crosshairs(FergusonBrannick2012$pub_z, FergusonBrannick2012$dis_z,
+ FergusonBrannick2012$pub_z_se, FergusonBrannick2012$dis_z_se)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: crosshairs ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘how_to_use_crosshairs.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘metaplus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘metap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall,
    clusterEvalQ, clusterExport, clusterMap,
    parApply, parCapply, parLapply, parLapplyLB,
    parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce,
    anyDuplicated, append, as.data.frame, basename,
    cbind, colMeans, colSums, colnames, dirname,
    do.call, duplicated, eval, evalq, get, grep,
    grepl, intersect, is.unsorted, lapply, lengths,
    mapply, match, mget, order, paste, pmax,
    pmax.int, pmin, pmin.int, rank, rbind, rowMeans,
    rowSums, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max,
    which.min

Error: package or namespace load failed for ‘S4Vectors’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/S4Vectors/libs/S4Vectors.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/S4Vectors/libs/S4Vectors.so: failed to map segment from shared object

Error: processing vignette ‘metaRNASeq.Rnw’ failed with diagnostics:
 chunk 2 (label = loadparameters) 
Error : package ‘S4Vectors’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MetaSKAT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MetaSKAT/libs/MetaSKAT.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MetaSKAT/libs/MetaSKAT.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘metaviz’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘meteo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘meteR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: downscaleSAR
> ### Title: Downscale the species area relationship (SAR) or endemics area
> ###   relationship (EAR)
> ### Aliases: downscaleSAR
> 
> ### ** Examples
> 
> data(anbo)
> anbo.esf <- meteESF(spp=anbo$spp, abund=anbo$count)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nleqslv/libs/nleqslv.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nleqslv/libs/nleqslv.so: failed to map segment from shared object
Calls: meteESF ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘meteR_vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: astroFns
Loading required package: lubridate
Error: package or namespace load failed for ‘lubridate’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Error: package ‘lubridate’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Methplot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MethylCapSig’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/geepack/libs/geepack.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/geepack/libs/geepack.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MetProc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/fastcluster/libs/fastcluster.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/fastcluster/libs/fastcluster.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘metricsgraphics’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘metRology’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘metR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: timereg
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘survival’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘metsyn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mev’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mewAvg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mewAvg/libs/mewAvg.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mewAvg/libs/mewAvg.so: failed to map segment from shared object
Execution halted
Running examples in ‘mExplorer-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mExplorer
> ### Title: Selection of process-specific regulators from high-throughput
> ###   data using multinomial regression models.
> ### Aliases: mExplorer
> 
> ### ** Examples
> 
> data(mExplorer_small_test_data)
> small_test_results = mExplorer(small_test_dframe, small_test_response_vec)
MEXPLORER_MSG: Response names recognized: 4/4
MEXPLORER_MSG: Ignoring single-level predictors: ndd1 
MEXPLORER_MSG: Ignoring single-level predictors: swi5 
MEXPLORER_MSG: Ignoring single-level predictors: hog1 
MEXPLORER_MSG: Ignoring single-level predictors: ste12 
MEXPLORER_MSG: Ignoring single-level predictors: gal3
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnet/libs/nnet.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnet/libs/nnet.so: failed to map segment from shared object
Calls: mExplorer ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Running examples in ‘mfe-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: infotheo
> ### Title: Information-theoretic meta-features
> ### Aliases: infotheo infotheo.default infotheo.formula
> 
> ### ** Examples
> 
> ## Extract all metafeatures
> infotheo(Species ~ ., iris)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/infotheo/libs/infotheo.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/infotheo/libs/infotheo.so: failed to map segment from shared object
Calls: infotheo ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘mfe-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mfGARCH’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘MFKnockoffs-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MFKnockoffs.filter
> ### Title: Model-Free Knockoff Filter
> ### Aliases: MFKnockoffs.filter
> 
> ### ** Examples
> 
> p=100; n=200; k=15
> mu = rep(0,p); Sigma = diag(p)
> X = matrix(rnorm(n*p),n)
> nonzero = sample(p, k)
> beta = 3.5 * (1:p %in% nonzero)
> y = X %*% beta + rnorm(n)
> 
> # Basic usage with default arguments
> result = MFKnockoffs.filter(X, y)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: MFKnockoffs.filter ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘MFKnockoffs.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: funData

Attaching package: ‘funData’

The following object is masked from ‘package:stats’:

    integrate

Error: package or namespace load failed for ‘MFPCA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MfUSampler’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ars/libs/ars.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ars/libs/ars.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mgc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mvabund
Error: package or namespace load failed for ‘mvabund’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘mvabund’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘mglm_vignette.rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MGL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MGL/libs/MGL.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MGL/libs/MGL.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: biomaRt
Error: package or namespace load failed for ‘biomaRt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Error: package ‘biomaRt’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mgm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MGSDA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Safe-Substitution.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MHCtools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Running examples in ‘MHTcop-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ac_fdr.test
> ### Title: Perform a FDR controlling test on marginal p-values that are
> ###   distributed according to an Archmidean copula
> ### Aliases: ac_fdr.test
> 
> ### ** Examples
> 
> #(Using p-values generated from the model (16))
> library(copula)
Error: package or namespace load failed for ‘copula’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘fdr-test.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MHTrajectoryR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Formula
Loading required package: truncreg
Loading required package: maxLik
Loading required package: miscTools
Error: package or namespace load failed for ‘maxLik’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘maxLik’ could not be loaded
Execution halted
Running examples in ‘MIAmaxent-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: deriveVars
> ### Title: Derive variables by transformation.
> ### Aliases: deriveVars
> 
> ### ** Examples
> 
> toydata_dvs <- deriveVars(toydata_sp1po, c("L", "M", "D", "HF", "HR", "T", "B"))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/class/libs/class.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/class/libs/class.so: failed to map segment from shared object
Calls: deriveVars ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘micEcon’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘micEconSNQP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘miceFast’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # Copyright (c) 2016 Nuno Fachada
  > # Distributed under the MIT License (http://opensource.org/licenses/MIT)
  > 
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘paper.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘miCoPTCM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘microbenchmark’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/microbenchmark/libs/microbenchmark.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/microbenchmark/libs/microbenchmark.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: microseq
Error: package or namespace load failed for ‘microseq’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘microseq’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘microcontax’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘micromapST’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘microplot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘microPop’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/deSolve/libs/deSolve.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/deSolve/libs/deSolve.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘microsamplingDesign’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘microseq’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘aggregating_variables_over_time.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘midas’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘midastouch-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mice.impute.midastouch
> ### Title: Predictive Mean Matching with distance aided selection of donors
> ### Aliases: mice.impute.midastouch midastouch
> ### Keywords: mice
> 
> ### ** Examples
> 
> ## from R:: mice, slightly adapted ##
> 
> # do default multiple imputation on a numeric matrix
> library(midastouch)
> library(mice)
Loading required package: lattice
Error: package or namespace load failed for ‘mice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  migrate.c:179:30: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size between 1 and 128 [-Wformat-overflow=]
  migrate.c:186:26: warning: ‘.asc’ directive writing 4 bytes into a region of size between 1 and 128 [-Wformat-overflow=]
  migrate.c:199:28: warning: ‘.asc’ directive writing 4 bytes into a region of size between 1 and 128 [-Wformat-overflow=]
  migrate.c:286:27: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 0 and 127 [-Wformat-overflow=]
  migrate.c:312:29: warning: ‘%d’ directive writing between 1 and 8 bytes into a region of size between 1 and 128 [-Wformat-overflow=]
  migrate.c:559:31: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 0 and 127 [-Wformat-overflow=]
  migrate.c:595:27: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 0 and 127 [-Wformat-overflow=]
  migrate.c:603:27: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 0 and 127 [-Wformat-overflow=]
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/MigClim.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MIICD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘miic’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/miic/libs/miic.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/miic/libs/miic.so: failed to map segment from shared object
Execution halted
Running examples in ‘MIIVsem-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: miive
> ### Title: Model-implied instrumental variable (MIIV) estimation
> ### Aliases: miive
> ### Keywords: 2sls MIIV MIIV-2SLS PIV SEM instrument least-squares tsls
> ###   two-stage
> 
> ### ** Examples
> 
> # Example 1
> 
> bollen1989a_model <- '
+ 
+     Eta1 =~ y1 + y2  + y3  + y4  
+     Eta2 =~ y5 + y6  + y7  + y8    
+     Xi1  =~ x1 + x2 + x3 
+ 
+     Eta1 ~ Xi1  
+     Eta2 ~ Xi1 
+     Eta2 ~ Eta1 
+ 
+     y1   ~~ y5
+     y2   ~~ y4
+     y2   ~~ y6
+     y3   ~~ y7
+     y4   ~~ y8
+     y6   ~~ y8 
+ 
+   '
> 
> 
> # Example 2
> 
> bollen1989a_model <- '
+ 
+     Eta1 =~ y1 + y2  + y3  + y4  
+     Eta2 =~ y5 + y6  + y7  + y8    
+     Xi1  =~ x1 + x2 + x3 
+ 
+     Eta1 ~ Xi1  
+     Eta2 ~ Xi1 
+     Eta2 ~ Eta1 
+ 
+     y1   ~~ y5
+     y2   ~~ y4
+     y2   ~~ y6
+     y3   ~~ y7
+     y4   ~~ y8
+     y6   ~~ y8 
+ '
> 
> my_instruments <- ' 
+     y1 ~ x2 + x3                            
+     y5 ~ y2 + y3 + y4 + x2              
+     y2 ~ y3 + y7 + y8 + x2           
+     y3 ~ y2 + y4 + y6 + y8        
+     y4 ~ y3 + y6           
+     y6 ~ y3 + y4 + y7 + x2            
+     y7 ~ y2 + y4 + y6 + y8       
+     y8 ~ y2 + y3 + y7 + x2          
+     x2 ~ y1 + y5 + y2 + y3 + y4 + y6
+     x3 ~ y1 + y5 + y2 + y3 + y4 + y6
+ '
> 
> miive(model = bollen1989a_model, 
+       data = bollen1989a, 
+       instruments = my_instruments)
Error: .onLoad failed in loadNamespace() for 'mnormt', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mnormt/libs/mnormt.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘milr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mime’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mime/libs/mime.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mime/libs/mime.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mindr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mineCitrus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mined’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘minerva’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘miniCRAN’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘minimaxdesign’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘minimist’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘miniUI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘minpack.lm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/minpack.lm/libs/minpack.lm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/minpack.lm/libs/minpack.lm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: scrime
Loading required package: Epi
Error: package or namespace load failed for ‘Epi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘Epi’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘minqa’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: klaR
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘MINVALintroduction.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: cmm
Loading required package: Rsolnp
Error: package or namespace load failed for ‘Rsolnp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/truncnorm/libs/truncnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/truncnorm/libs/truncnorm.so: failed to map segment from shared object
Error: package ‘Rsolnp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MIPHENO’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘miRada’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/miRada/libs/miRada.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/miRada/libs/miRada.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MiRAnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘miRNAss’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: stats4
Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lattice’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘misaem’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘misc3d-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: contour3d
> ### Title: Draw an Isosurface, a Three Dimension Contour Plot
> ### Aliases: contour3d
> ### Keywords: hplot
> 
> ### ** Examples
> 
>   #Example 1: Draw a ball
>   f <- function(x, y, z)x^2+y^2+z^2
>   x <- seq(-2,2,len=20)
>   contour3d(f,4,x,x,x)
Error: package or namespace load failed for ‘rgl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error in loadRGL() : rgl is mot available
Calls: contour3d -> drawScene.rgl -> loadRGL
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: roxygen2
Error: package or namespace load failed for ‘roxygen2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Error: package ‘roxygen2’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘misclassGLM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘miscset’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Miso’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mispr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘misreport’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘missMDA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/leaps/libs/leaps.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/leaps/libs/leaps.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘missRanger’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/FNN/libs/FNN.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/FNN/libs/FNN.so: failed to map segment from shared object
Execution halted
Running examples in ‘mistat-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: CONTACTLEN
> ### Title: Length of the Electrical Contacts
> ### Aliases: CONTACTLEN
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(CONTACTLEN)
> 
> library(qcc)
Error: package or namespace load failed for ‘qcc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mistral’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/DiceKriging/libs/DiceKriging.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/DiceKriging/libs/DiceKriging.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mistr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MitISEM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mitml’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...

Error: processing vignette ‘smi.Rnw’ failed with diagnostics:
 chunk 2 
Error : package or namespace load failed for ‘foreign’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/foreign/libs/foreign.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/foreign/libs/foreign.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘MLdist.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: colorspace
Error: package or namespace load failed for ‘colorspace’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/colorspace/libs/colorspace.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/colorspace/libs/colorspace.so: failed to map segment from shared object
Error: package ‘colorspace’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mixchar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/minpack.lm/libs/minpack.lm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/minpack.lm/libs/minpack.lm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mixdir’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: gdata
Error: package or namespace load failed for ‘gdata’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Error: package ‘gdata’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mixedMem’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: gaussquad
Loading required package: polynom
Loading required package: orthopolynom
Loading required package: Rmpfr
Loading required package: gmp
Error: package or namespace load failed for ‘gmp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gmp/libs/gmp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gmp/libs/gmp.so: failed to map segment from shared object
Error: package ‘gmp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MixedPsy’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: sde
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: stats4
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MixfMRI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mixggm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mixlm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MixMAP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mixpack’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mixPHM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mix/libs/mix.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mix/libs/mix.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Loading required package: randomForest
Error: package or namespace load failed for ‘randomForest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/randomForest/libs/randomForest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/randomForest/libs/randomForest.so: failed to map segment from shared object
Error: package ‘randomForest’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mixR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tcltk
Loading required package: tcltk2
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Running examples in ‘MixSIAR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mixsiar_gui
> ### Title: Run the GUI version of MixSIAR
> ### Aliases: mixsiar_gui
> 
> ### ** Examples
> 
> mixsiar_gui()
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RGtk2/libs/RGtk2.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RGtk2/libs/RGtk2.so: failed to map segment from shared object
Warning: Failed to load RGtk2 dynamic library, attempting to install it.
Error in mixsiar_gui() : 
  *** gWidgetsRGtk2 package not able to be loaded. ***
        If 'library('gWidgetsRGtk2')' does not work, MixSIAR GUI will not run.
        On Windows/Linux, try 'install.packages('gWidgetsRGtk2')'.
        On Mac, close R, download and install GTK+ from:
        http://r.research.att.com/#other. Then install latest X11 application
        (xQuartz) from http://xquartz.macosforge.org/landing/.

        If installing GTK+ continues to be problematic, consider using the
        script version of MixSIAR. See manual for help and examples.
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘cladocera_ex.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Packages suggested but not available for checking: ‘Rmosek’ ‘REBayes’
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mixsqp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mixtools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mixtox’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/minpack.lm/libs/minpack.lm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/minpack.lm/libs/minpack.lm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MixtureInf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mixture’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mixture/libs/mixture.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mixture/libs/mixture.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MixtureRegLTIC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MixtureRegLTIC/libs/MixtureRegLTIC.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MixtureRegLTIC/libs/MixtureRegLTIC.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘convergence.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mizer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mkde’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mkin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/deSolve/libs/deSolve.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/deSolve/libs/deSolve.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MKmisc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mknapsack’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘developing-with-mlapi.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MlBayesOpt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mlbench’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mlbench/libs/mlbench.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mlbench/libs/mlbench.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mlbgameday’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: snowfall
Loading required package: snow
Loading required package: igraph
Error: package or namespace load failed for ‘igraph’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Error: package ‘igraph’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mldr’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mleap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mlearning’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/class/libs/class.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/class/libs/class.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MLEcens’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MLEcens/libs/MLEcens.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MLEcens/libs/MLEcens.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mlegp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mlegp/libs/mlegp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mlegp/libs/mlegp.so: failed to map segment from shared object
Execution halted
Running examples in ‘mle.tools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: coxsnell.bc
> ### Title: Bias-Corrected Maximum Likelihood Estimate(s)
> ### Aliases: coxsnell.bc
> 
> ### ** Examples
> 
> {library(mle.tools); library(fitdistrplus); set.seed(1)};
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: urca
Error: package or namespace load failed for ‘urca’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘urca’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mlflow’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MLGL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/leaps/libs/leaps.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/leaps/libs/leaps.so: failed to map segment from shared object
Execution halted
Running examples in ‘MLID-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: residuals.index
> ### Title: Extract Model Residuals
> ### Aliases: residuals.index
> 
> ### ** Examples
> 
> data(aggdata)
> index <- id(aggdata, vars = c("Bangladeshi", "WhiteBrit"))
> # The ID can be derived from the residuals
> 0.5 * sum(abs(residuals(index)))
[1] 0.7716269
> # which is the same as
> index[1]
[1] 0.772
> 
> # Extract the standardized and look for regions where the share of the
> # Bangladeshi population is unusualy high with respect to the White British
> # resids <- rstandard(index)
> # table(aggdata$RGN[resids > 2.58])
> 
> # Residuals for a multilevel index
> index <- id(aggdata, vars = c("Bangladeshi", "WhiteBrit"),
+ levels = c("MSOA","LAD","RGN"))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Calls: id ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘MLID.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mljar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mlmc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘MLmetrics-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GainAUC
> ### Title: Area Under the Gain Chart
> ### Aliases: GainAUC
> 
> ### ** Examples
> 
> data(cars)
> logreg <- glm(formula = vs ~ hp + wt,
+               family = binomial(link = "logit"), data = mtcars)
> GainAUC(y_pred = logreg$fitted.values, y_true = mtcars$vs)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Calls: GainAUC ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Running examples in ‘mlmm.gwas-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mlmm_allmodels
> ### Title: Multi-Locus Mixed-Model
> ### Aliases: mlmm_allmodels
> 
> ### ** Examples
> 
> ### Data for additive and additive+dominance models
> 
> data("mlmm.gwas.AD")
> 
> ### Additive model ###
> 
> XX = list(Xa)
> KK = list(K.add)
> 
> # GWAS
> res_mlmm <- mlmm_allmodels(floweringDateAD, XX, KK)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: mlmm_allmodels ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘gwas-manual.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mlmmm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mlmmm/libs/mlmmm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mlmmm/libs/mlmmm.so: failed to map segment from shared object
Execution halted
Running examples in ‘ML.MSBD-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ML.MSBD-package
> ### Title: Maximum Likelihood Inference on Multi-State Trees
> ### Aliases: ML.MSBD-package ML.MSBD
> ### Keywords: package
> 
> ### ** Examples
> 
> # Simulate a random phylogeny
> set.seed(25)
> tree <- ape::rtree(10)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Calls: :: ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘Using_ML.MSBD.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Formula
Loading required package: maxLik
Loading required package: miscTools
Error: package or namespace load failed for ‘maxLik’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘maxLik’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘tutorial.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘mlsjunkgen.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mlt
Loading required package: basefun
Loading required package: variables
Error: package or namespace load failed for ‘basefun’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘basefun’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mltools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: basefun
Loading required package: variables
Error: package or namespace load failed for ‘basefun’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘basefun’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mlVAR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MLZ’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MM4LMM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mmand’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mmapcharr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mmap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mmap/libs/mmap.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mmap/libs/mmap.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mmcm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/OpenMPController/libs/OpenMPController.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/OpenMPController/libs/OpenMPController.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: DirichletReg
Loading required package: Formula
Loading required package: rgl
Error: package or namespace load failed for ‘rgl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘rgl’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mmeta’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mmeta/libs/mmeta.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mmeta/libs/mmeta.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mmmgee’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mmpf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: expm
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MMPPsampler’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Oarray
Loading required package: partitions
Error: package or namespace load failed for ‘partitions’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gmp/libs/gmp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gmp/libs/gmp.so: failed to map segment from shared object
Error: package ‘partitions’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mmtfa’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/matrixStats/libs/matrixStats.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/matrixStats/libs/matrixStats.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mnis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mnlogit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ICSNP
Loading required package: mvtnorm
Error: package or namespace load failed for ‘mvtnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘mvtnorm’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mnormpow’:
 .onLoad failed in loadNamespace() for ‘mnormpow’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mnormpow/libs/mnormpow.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mnormpow/libs/mnormpow.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mnormt’:
 .onLoad failed in loadNamespace() for ‘mnormt’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mnormt/libs/mnormt.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Loading required package: party
Loading required package: grid
Loading required package: mvtnorm
Error: package or namespace load failed for ‘mvtnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘mvtnorm’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Ohmage
Error: package or namespace load failed for ‘Ohmage’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Error: package ‘Ohmage’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mobsim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: cclust
Error: package or namespace load failed for ‘cclust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cclust/libs/cclust.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cclust/libs/cclust.so: failed to map segment from shared object
Error: package ‘cclust’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mockery’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Running examples in ‘mockr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: with_mock
> ### Title: Mock functions in a package.
> ### Aliases: with_mock
> 
> ### ** Examples
> 
> some_func <- function() stop("oops")
> some_other_func <- function() some_func()
> tester_func <- function() {
+   with_mock(
+     some_func = function() 42,
+     some_other_func()
+   )
+ }
> try(some_other_func())
Error in some_func() : oops
> tester_func()
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so: failed to map segment from shared object
Calls: tester_func ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Running examples in ‘modcmfitr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fitDirichlet
> ### Title: Fit Dirichlet distribution
> ### Aliases: fitDirichlet
> ### Keywords: Dirichlet
> 
> ### ** Examples
> 
> Outcomes <- c("Remission","Progression","Dead")
> RawData <- matrix(data = c(0.43, 0.55, 0.65,
+                           0.16, 0.27, 0.46,
+                           0.03, 0.18, 0.23
+            ),ncol=3,byrow=TRUE)
> 
> SearchParams <- c(10000,100) #number of iterations, max number of searches
> 
> Quantiles <- c(0.025,0.5,0.975) # example here is 95% credibility limits and median.
> 
> fitDirichlet(Outcomes, RawData, SearchParams, Quantiles)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/libs/nloptr.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/libs/nloptr.so: failed to map segment from shared object
Calls: fitDirichlet ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘modcmfitrOverview.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘modeest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Modelcharts’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘modeldb’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ClassDiscovery
Loading required package: cluster
Error: package or namespace load failed for ‘cluster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Error: package ‘cluster’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: PolynomF
Error: package or namespace load failed for ‘PolynomF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PolynomF/libs/PolynomF.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PolynomF/libs/PolynomF.so: failed to map segment from shared object
Error: package ‘PolynomF’ could not be loaded
Execution halted
Running examples in ‘ModelGood-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: AutoSelectLRM
> ### Title: Automated backward elemination for logistic regression
> ### Aliases: AutoSelectLRM
> 
> ### ** Examples
> 
> library(rms)
Loading required package: Hmisc
Loading required package: lattice
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/survival/libs/survival.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/survival/libs/survival.so: failed to map segment from shared object
Error: package ‘survival’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘modelgrid’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ModelMetrics’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘modelr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘moderndive’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘modesto’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘modest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘modi-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GIMCD
> ### Title: Gaussian imputation followed by MCD
> ### Aliases: GIMCD
> 
> ### ** Examples
> 
> data(bushfirem)
> det.res <- GIMCD(bushfirem, alpha = 0.1)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/norm/libs/norm.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/norm/libs/norm.so: failed to map segment from shared object
Calls: GIMCD ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘modi_vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running ‘run_tests.r’ [0s/0s]
Running the tests in ‘tests/run_tests.r’ failed.
Complete output:
  > # Run all unit tests
  > 
  > # This is a wrapper around all the tests specified
  > # in the tests/testthat directory. These tests are visible
  > # to users and serve as small examples as well.
  > testthat::test_check("MODISTools")
  Error in dyn.load(file, DLLpath = DLLpath, ...) : 
    unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Calls: :: ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘modistools-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RGtk2/libs/RGtk2.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RGtk2/libs/RGtk2.so: failed to map segment from shared object
Error: package or namespace load failed for ‘MODIStsp’:
 .onLoad failed in loadNamespace() for ‘RGtk2’, details:
  call: install_all()
  error: This platform is not yet supported by the automatic installer. Please install GTK+ manually, if necessary. See: http://www.gtk.org
In addition: Warning message:
Failed to load RGtk2 dynamic library, attempting to install it. 
Execution halted
Running examples in ‘modmarg-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: marg.ivreg
> ### Title: Predicted Margins for 'ivreg' objects from the 'AER' package
> ### Aliases: marg.ivreg
> 
> ### ** Examples
> 
> # From ?AER::ivreg
> 
> # data
> data("CigarettesSW", package = "AER")
> CigarettesSW$rprice <- with(CigarettesSW, price/cpi)
> CigarettesSW$rincome <- with(CigarettesSW, income/population/cpi)
> CigarettesSW$tdiff <- with(CigarettesSW, (taxs - tax)/cpi)
> 
> # model
> fm <- AER::ivreg(log(packs) ~ log(rprice) + log(rincome) |
+                    log(rincome) + tdiff + I(tax/cpi),
+                  data = CigarettesSW, subset = year == "1995")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/zoo/libs/zoo.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/zoo/libs/zoo.so: failed to map segment from shared object
Calls: :: ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘delta-method.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ROI
Error: package or namespace load failed for ‘ROI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/slam/libs/slam.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/slam/libs/slam.so: failed to map segment from shared object
Error: package ‘ROI’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: impute
Error: package or namespace load failed for ‘impute’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/impute/libs/impute.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/impute/libs/impute.so: failed to map segment from shared object
Error: package ‘impute’ could not be loaded
Execution halted
Running examples in ‘modules-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: export
> ### Title: Define Modules in R
> ### Aliases: export expose extend import module autoTopEncl use
> 
> ### ** Examples
> 
> ## Not run: 
> ##D vignette("modulesInR", "modules")
> ## End(Not run)
> 
> m <- module({
+   fun <- function(x) x
+ })
> 
> m$fun(1)
[1] 1
> 
> m <- module({
+ 
+   import("stats", "median")
+   export("fun")
+ 
+   fun <- function(x) {
+     ## This is an identity function
+     ## x (ANY)
+     x
+   }
+ 
+ })
> 
> m$fun
function (x) 
{
    x
}
<environment: 0x559ad27a47d8>
> m
fun:
function(x)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Calls: <Anonymous> ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘modulesInR.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Basic_Usage.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MoEClust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘moezipfR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: dmoezipf
> ### Title: Density function.
> ### Aliases: dmoezipf
> 
> ### ** Examples
> 
> dmoezipf(1:10, 2.5, 1.3)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/VGAM/libs/VGAM.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/VGAM/libs/VGAM.so: failed to map segment from shared object
Calls: dmoezipf ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Running examples in ‘mogavs-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cv.mogavs
> ### Title: k-Fold Crossvalidation for a mogavs model
> ### Aliases: cv.mogavs
> ### Keywords: models regression
> 
> ### ** Examples
> 
> data(sampleData)
> mod<-mogavs(y~.,data=sampleData,maxGenerations=20)
[1] "Generation 1 / 20"
[1] "Generation 2 / 20"
[1] "Generation 3 / 20"
[1] "Generation 4 / 20"
[1] "Generation 5 / 20"
[1] "Generation 6 / 20"
[1] "Generation 7 / 20"
[1] "Generation 8 / 20"
[1] "Generation 9 / 20"
[1] "Generation 10 / 20"
[1] "Generation 11 / 20"
[1] "Generation 12 / 20"
[1] "Generation 13 / 20"
[1] "Generation 14 / 20"
[1] "Generation 15 / 20"
[1] "Generation 16 / 20"
[1] "Generation 17 / 20"
[1] "Generation 18 / 20"
[1] "Generation 19 / 20"
[1] "Generation 20 / 20"
> cv.mogavs(mod,nvar=3,data=sampleData,y_ind=1,K=10,R=1,order=FALSE)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Calls: cv.mogavs ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: aod
Loading required package: survey
Loading required package: grid
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Running examples in ‘moko-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: EHVI
> ### Title: EHVI: Constrained Expected Hypervolume Improvement
> ### Aliases: EHVI
> 
> ### ** Examples
> 
> # ------------------------
> # The Nowacki Beam
> # ------------------------
> n <- 20
> d <- 2
> doe <- replicate(d,sample(0:n,n))/n
> res <- t(apply(doe, 1, nowacki_beam, box = data.frame(b = c(10, 50), h = c(50, 250))))
> model <- mkm(doe, res, modelcontrol = list(objective = 1:2, lower=rep(0.1,d)))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/DiceKriging/libs/DiceKriging.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/DiceKriging/libs/DiceKriging.so: failed to map segment from shared object
Calls: mkm ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘nb_vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: alphahull
Error: package or namespace load failed for ‘alphahull’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘alphahull’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MOLHD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dotCall64/libs/dotCall64.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dotCall64/libs/dotCall64.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘momentuHMM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Momocs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘momr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: momr-package
> ### Title: Mining Metaomics Data In R
> ### Aliases: momr-package momr
> ### Keywords: package shotgun metagenomics MGS MetaGenomicSpecies data
> ###   mining biomarker selection metagenomics
> 
> ### ** Examples
> 
>   
> # load the package
> library(momr)
> 
> #' all the data in the package
> # data(package="momr")
> 
> #' load the raw and frequency test dataset
> data("hs_3.3_metahit_sample_dat_raw")
> data("hs_3.3_metahit_sample_dat_freq")
> 
> 
> #' NORMALIZATION
> #' This should be performed with the whole dataset (complete catalogue). 
> #' But here is an exemple with the subset of the data for illustration purposes
> data(hs_3.3_metahit_genesize)
> norm.data <- normFreqRPKM(dat=hs_3.3_metahit_sample_dat_raw, cat=hs_3.3_metahit_genesize)
[1] "The dataset is a matrix"
> 
> 
> #' CLUSTERING OF SAMPLES
> hc.data <- hierClust(data=hs_3.3_metahit_sample_dat_freq[,1:5], side="col")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/survival/libs/survival.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/survival/libs/survival.so: failed to map segment from shared object
Calls: hierClust ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MomTrunc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  monetdblite/src/gdk/gdk_heap.c:189:3: warning: ‘strncpy’ output truncated before terminating nul copying 9 bytes from a string of the same length [-Wstringop-truncation]
  monetdblite/src/gdk/gdk_heap.c:260:30: warning: ‘%s’ directive writing likely 3 or more bytes into a region of size between 0 and 99 [-Wformat-overflow=]
  monetdblite/src/mal/sqlbackend/rel_bin.c:2949:2: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
  monetdblite/src/mal/sqlbackend/rel_bin.c:1083:2: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
  monetdblite/src/mal/sqlbackend/sql_statement.c:3193:3: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
  monetdblite/src/mal/sqlbackend/sql_statement.c:3196:3: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
  monetdblite/src/mal/sqlbackend/sql_statement.c:3186:3: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
  monetdblite/src/sql/server/rel_planner.c:82:4: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
  monetdblite/src/sql/server/rel_semantic.c:54:2: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
  monetdblite/src/sql/server/rel_updates.c:1729:2: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/MonetDBLite.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MonetDBLite’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MonetDB.R’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mongolite’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘monkeylearn_intro.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: compare

Attaching package: ‘compare’

The following object is masked from ‘package:base’:

    isTRUE

Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Error: package or namespace load failed for ‘MonoInc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: pls

Attaching package: ‘pls’

The following object is masked from ‘package:stats’:

    loadings

Loading required package: lars
Error: package or namespace load failed for ‘lars’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lars/libs/lars.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lars/libs/lars.so: failed to map segment from shared object
Error: package ‘lars’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘monoreg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/monoreg/libs/monoreg.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/monoreg/libs/monoreg.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘monotonicity’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘monreg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/monreg/libs/monreg.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/monreg/libs/monreg.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MonteCarlo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlecuyer/libs/rlecuyer.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlecuyer/libs/rlecuyer.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘moonBook’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘morpheus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jointDiag/libs/jointDiag.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jointDiag/libs/jointDiag.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Morpho’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘morse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/deSolve/libs/deSolve.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/deSolve/libs/deSolve.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mortAAR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MortalityGaps’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MortalityLaws’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: svcm
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: wpp2017
Loading required package: plyr
Error: package or namespace load failed for ‘plyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘plyr’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mosaicCore
Error: package or namespace load failed for ‘mosaicCore’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘mosaicCore’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mosaicCore’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mosum’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘moult’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mountainplot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mousetrap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘movecost-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: movecost
> ### Title: R function for calculating accumulated cost of movement across
> ###   the terrain and least-cost paths from an origin
> ### Aliases: movecost
> ### Keywords: movecost
> 
> ### ** Examples
> 
> # load a sample Digital Terrain Model
> volc <- raster::raster(system.file("external/maungawhau.grd", package="gdistance"))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Calls: :: ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: geosphere
Error: package or namespace load failed for ‘geosphere’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘geosphere’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘moveVis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: move
Loading required package: geosphere
Error: package or namespace load failed for ‘geosphere’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘geosphere’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘movMF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/slam/libs/slam.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/slam/libs/slam.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘mozzie.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mpath’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mlbench
Error: package or namespace load failed for ‘mlbench’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mlbench/libs/mlbench.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mlbench/libs/mlbench.so: failed to map segment from shared object
Error: package ‘mlbench’ could not be loaded
Execution halted
Running examples in ‘MPDiR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Context
> ### Title: Psychometric Functions for the Effects of Context on Contrast
> ###   Detection
> ### Aliases: Context
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(Context)
> Context <- within(Context, Pc <- NumYes/(NumYes + NumNo))
> lattice::xyplot(Pc ~ TargCntr | ContCntr, data = Context, 
+ 	groups = Obs,	type = c("l", "p"),
+ 	auto.key = list(space = "right"))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Calls: :: ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Running examples in ‘MPkn-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MPkn-package
> ### Title: Calculations of One Discrete Model in Several Time Steps
> ### Aliases: MPkn-package
> 
> ### ** Examples
> 
> require(MPkn)
> require(markovchain)
Loading required package: markovchain
Error: package or namespace load failed for ‘markovchain’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
> options(digits = 14)
> n = 12
> k = 2
> rz = 11
> P = array(0, c(rz, rz))
> for (i in 1:rz){
+   po = runif(rz)
+   P[i, ] = po/sum(po)
+ }
> I = diag(1, rz, rz)
> Myy = MUPkL(P, P, I, n, k, c(1:rz))
> StSy = NULL
> for (i in 1:rz) StSy = c(StSy, Myy$Navg[,,i][n])
> mrkv = new("markovchain", transitionMatrix = P)
Error in getClass(Class, where = topenv(parent.frame())) : 
  “markovchain” is not a defined class
Calls: new -> getClass
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Fundament.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mplot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MplusAutomation’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘MPN-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mppR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mpr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MPTinR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MPTmultiverse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mptools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: pch
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘survival’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mra’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mra/libs/mra.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mra/libs/mra.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mratios’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mRchmadness’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MRCV’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mrds’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/truncnorm/libs/truncnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/truncnorm/libs/truncnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mregions’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MRFA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mrgsolve’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: IHSEP
Error: package or namespace load failed for ‘IHSEP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘IHSEP’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mRm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mRm/libs/mRm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mRm/libs/mRm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MRPC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bnlearn/libs/bnlearn.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bnlearn/libs/bnlearn.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Loading required package: compiler
Loading required package: matrixcalc
Loading required package: Formula
Error: package or namespace load failed for ‘MRSP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MRSP/libs/MRSP.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MRSP/libs/MRSP.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MRS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: boa
Loading required package: SemiPar
Error: package or namespace load failed for ‘SemiPar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Error: package ‘SemiPar’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘msaenet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘msap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘msaR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MSbox’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘msBP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/msBP/libs/msBP.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/msBP/libs/msBP.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mschart’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MSCMT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mscstexta4r’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mscstts’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mscsweblm4r’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MsdeParEst’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘msde’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Depends: includes the non-default packages:
  ‘amap’ ‘clValid’ ‘cluster’ ‘fpc’ ‘mzR’ ‘xcms’
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: MSeasy
Loading required package: amap
Error: package or namespace load failed for ‘amap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/amap/libs/amap.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/amap/libs/amap.so: failed to map segment from shared object
Error: package ‘amap’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: DLMtool
Loading required package: snowfall
Loading required package: snow
Error: package or namespace load failed for ‘DLMtool’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘DLMtool’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MSGARCH’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MSGLasso’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MSGLasso/libs/MSGLasso.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MSGLasso/libs/MSGLasso.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘msgpack’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/msgpack/libs/msgpack.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/msgpack/libs/msgpack.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘msgps’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/msgps/libs/msgps.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/msgps/libs/msgps.so: failed to map segment from shared object
Execution halted
Running examples in ‘MSG-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: BinormCircle
> ### Title: Random numbers containing a "circle"
> ### Aliases: BinormCircle
> 
> ### ** Examples
> 
> data(BinormCircle)
> 
> ## original plot: cannot see anything
> plot(BinormCircle)
> 
> ## transparent colors (alpha = 0.1)
> plot(BinormCircle, col = rgb(0, 0, 0, 0.1))
> 
> ## set axes lmits
> plot(BinormCircle, xlim = c(-1, 1), ylim = c(-1, 1))
> 
> ## small symbols
> plot(BinormCircle, pch = ".")
> 
> ## subset
> plot(BinormCircle[sample(nrow(BinormCircle), 1000), ])
> 
> ## 2D density estimation
> library(KernSmooth)
Error: package or namespace load failed for ‘KernSmooth’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KernSmooth/libs/KernSmooth.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: IRanges
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Loading required package: S4Vectors
Loading required package: stats4
Error: package or namespace load failed for ‘S4Vectors’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/S4Vectors/libs/S4Vectors.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/S4Vectors/libs/S4Vectors.so: failed to map segment from shared object
Error: package ‘S4Vectors’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘msltrend’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘msm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘msmtools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MSPRT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nleqslv/libs/nleqslv.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nleqslv/libs/nleqslv.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MSQC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mssqlR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RODBC/libs/RODBC.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RODBC/libs/RODBC.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘mstherm.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mstrio’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Error: package or namespace load failed for ‘MSwM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MTA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mtconnectR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MTE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘mthapower-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mthapower
> ### Title: Post-hoc power calculations - mtDNA haplogroups
> ### Aliases: mthapower
> 
> ### ** Examples
> 
> # Example 1:
> pow <- mthapower(n.cases=203, p0=0.443, Nh=13, OR.cas.ctrl=2.33, sig.level=0.05)
> 
> # Example 2:
> # Create data frames
> pow.H150 <- mthapower(n.cases=seq(50,1000,by=50), p0=0.433, Nh=11,
+                       OR.cas.ctrl=1.5, sig.level=0.05)
> pow.H175 <- mthapower(n.cases=seq(50,1000,by=50), p0=0.433, Nh=11,
+                       OR.cas.ctrl=1.75, sig.level=0.05)
> pow.H200 <- mthapower(n.cases=seq(50,1000,by=50), p0=0.433, Nh=11,
+                       OR.cas.ctrl=2, sig.level=0.05)
> pow.H250 <- mthapower(n.cases=seq(50,1000,by=50), p0=0.433, Nh=11,
+                       OR.cas.ctrl=2.5, sig.level=0.05)
> 
> # Bind the three data frames:
> bindata <- rbind(pow.H150,pow.H175,pow.H200,pow.H250)
> # Adds column OR to binded data frame:
> bindata$OR <- rep(factor(c(1.50,1.75,2,2.5)),
+               times = c(nrow(pow.H150),
+                         nrow(pow.H175),
+                         nrow(pow.H200),
+                         nrow(pow.H250)))
> # Create plot:
> # install.packages("car")
> library(car)
Loading required package: carData
Error: package or namespace load failed for ‘car’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: magrittr
Error: package or namespace load failed for ‘MtreeRing’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MTS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MTurkRGUI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MTurkR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MuChPoint’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mudata2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mudens’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mudfold’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘muhaz’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘muHVT.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘muir’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘MullerPlot.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘MultAlloc-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: BSSM_FC
> ### Title: Optimal Allocation - Minimum Sample Size
> ### Aliases: BSSM_FC
> ### Keywords: ~kwd1 ~kwd2
> 
> ### ** Examples
> 
> #Example1 - Number of survey variables (m=2) and seven strata (H=7)
> Nh<-c(49,78,20,39,73,82,89)
> Yj<-c(542350,56089251)
> Sh2j<-rbind(c(4436978,5581445,33454902,5763294,8689167,3716130,13938505),
+             c(11034299660,40919330279,33519355946,18228286901,74247764986,49062224184,5783096806))
> cvt<-c(0.02,0.02)
> result<-BSSM_FC(Nh,Sh2j,Yj,cvt)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/slam/libs/slam.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/slam/libs/slam.so: failed to map segment from shared object
Calls: BSSM_FC ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘multdyn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘multiApply’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MultiBD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘multibiplotGUI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘multiCA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MultiCNVDetect’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MultiCNVDetect/libs/MultiCNVDetect.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MultiCNVDetect/libs/MultiCNVDetect.so: failed to map segment from shared object
Execution halted
Running examples in ‘multicolor-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: nix_first_newline
> ### Title: Remove the first instance of a newline from a string
> ### Aliases: nix_first_newline
> 
> ### ** Examples
> 
> nix_first_newline("onetwo\nthree\nfour")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Calls: nix_first_newline ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘multiDimBio’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MultiFit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘multifluo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘multigroup’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘multilaterals-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: growth
> ### Title: Compute growth rates of indexes
> ### Aliases: growth
> 
> ### ** Examples
> 
> 
> library(parallel)
> library(igraph)
Error: package or namespace load failed for ‘igraph’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘multimark’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: gtable
Loading required package: grid
Error: package or namespace load failed for ‘MultiMeta’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘multimode’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rootSolve/libs/rootSolve.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rootSolve/libs/rootSolve.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘multinets’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘multipanelfigure’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MultipleBubbles’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘TwoModeNetworks.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘Sensitivity_analysis.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘multiROC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MultiRR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘multiselect-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: multiselect
> ### Title: Selecting Combinations of Predictors by Leveraging Multiple AUCs
> ###   for an Ordered Multilevel Outcome
> ### Aliases: multiselect
> 
> ### ** Examples
> 
>   ## Don't show: 
>   library(MASS)
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘multisensi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/sensitivity/libs/sensitivity.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/sensitivity/libs/sensitivity.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘multispatialCCM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/multispatialCCM/libs/multispatialCCM.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/multispatialCCM/libs/multispatialCCM.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘multistateutils’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MultiSV’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘multitaper’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/multitaper/libs/multitaper.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/multitaper/libs/multitaper.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘multivariance’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MultivariateRandomForest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MultiVarMI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘multivator’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: CMLS
Loading required package: quadprog
Error: package or namespace load failed for ‘quadprog’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Error: package ‘quadprog’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘multiwayvcov’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MultNonParam’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MultNonParam/libs/MultNonParam.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MultNonParam/libs/MultNonParam.so: failed to map segment from shared object
Execution halted
Depends: includes the non-default packages:
  ‘car’ ‘pdist’ ‘pls’ ‘gplots’ ‘mvtnorm’ ‘robustbase’ ‘gtools’ ‘bitops’
  ‘caTools’ ‘pcaPP’ ‘rrcov’
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MuMIn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘munfold’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘munsell’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/colorspace/libs/colorspace.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/colorspace/libs/colorspace.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: seewave
Error: package or namespace load failed for ‘seewave’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘seewave’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mutoss
Loading required package: mvtnorm
Error: package or namespace load failed for ‘mvtnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘mvtnorm’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Loading required package: ggplot2
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘ggplot2’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MuViCP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/sm/libs/sm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/sm/libs/sm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mvabund’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MVar.pt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MVar.pt/libs/MVar.pt.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MVar.pt/libs/MVar.pt.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MVar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MVar/libs/MVar.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MVar/libs/MVar.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MvBinary’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rattle
Error: package or namespace load failed for ‘rattle’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Error: package ‘rattle’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mvctm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rfit/libs/Rfit.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rfit/libs/Rfit.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mvdalab’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MVLM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/CompQuadForm/libs/CompQuadForm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/CompQuadForm/libs/CompQuadForm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rcdd
Error: package or namespace load failed for ‘rcdd’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rcdd/libs/rcdd.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rcdd/libs/rcdd.so: failed to map segment from shared object
Error: package ‘rcdd’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mvMonitoring’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mvna’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MVNBayesian’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mvnfast’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mvnmle’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvnmle/libs/mvnmle.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvnmle/libs/mvnmle.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MVN’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: minqa
Error: package or namespace load failed for ‘minqa’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘minqa’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: sgeostat
Error: package or namespace load failed for ‘sgeostat’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/sgeostat/libs/sgeostat.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/sgeostat/libs/sgeostat.so: failed to map segment from shared object
Error: package ‘sgeostat’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mvPot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvPot/libs/mvPot.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvPot/libs/mvPot.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mvQuad’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mvrtn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvrtn/libs/mvrtn.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvrtn/libs/mvrtn.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ouch
Loading required package: subplex
Error: package or namespace load failed for ‘subplex’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/subplex/libs/subplex.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/subplex/libs/subplex.so: failed to map segment from shared object
Error: package ‘subplex’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mvst’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mvtboost’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mvtnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MVT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MVT/libs/MVT.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MVT/libs/MVT.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: cem
Loading required package: tcltk
Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lattice’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mwaved’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘MWLasso-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MWLasso
> ### Title: Penalized Moving-Window Lasso Method for Genome-Wide Association
> ###   Studies
> ### Aliases: MWLasso MW_parameters
> ### Keywords: model fitting
> 
> ### ** Examples
> 
> # In example 1, feature matrix X and response variable Y are randomly generated.
> # Example 1:
> n = 100
> p = 200
> X = matrix(rnorm(n*p, mean = 0, sd = 1), nrow = n, ncol = p)
> X[2,1] = NA; X[80:90,1]= NA; 
> Y =  rnorm(n, mean = 0, sd = 1)
> 
> number = 20
> gamma2 = 0.1
> d = 4
> params = MW_parameters(X, Y, d, number, gamma2, method="linear")
Tuning parameters are: lambda = 0.1413146, eta = 1.271831.> lambda = params[1]
> eta = params[2]
> beta.hat = MWLasso(X, Y, lambda, eta, d, method="linear")
> 
> # In example 2, the nki70 dataset is from the "penalized" package
> # (https://cran.r-project.org/web/packages/penalized/penalized.pdf).
> # The response variable Y is "event", the disease indicator.
> # The feature matrix X is "TSPYL5...C20orf46", the gene expression
> # measurements of 70 prognostic genes.
> # Example 2:
> require("penalized")
Loading required package: penalized
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Failed with error:  ‘package ‘survival’ could not be loaded’
> data(nki70)
Warning in data(nki70) : data set ‘nki70’ not found
> data = nki70
Error: object 'nki70' not found
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MWRidge’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘MXM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnet/libs/nnet.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnet/libs/nnet.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mycor’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘myepisodes’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Myrrixjars’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Myrrixjars
Error: package or namespace load failed for ‘Myrrixjars’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Error: package ‘Myrrixjars’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘My.stepwise’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘myTAI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘mztwinreg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘n1qn1’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nabor’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘naivereg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘namer-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: name_chunks
> ### Title: Name chunks in a single file
> ### Aliases: name_chunks
> 
> ### ** Examples
> 
> temp_file_path <- file.path(tempdir(), "test.Rmd")
> file.copy(system.file("examples", "example1.Rmd", package = "namer"),
+           temp_file_path,
+           overwrite = TRUE)
[1] TRUE
> name_chunks(temp_file_path)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: name_chunks ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘namer.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘namespace’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/namespace/libs/namespace.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/namespace/libs/namespace.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NAM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nandb’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘naniar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nanop’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nanop/libs/nanop.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nanop/libs/nanop.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nanotime’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bit/libs/bit.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bit/libs/bit.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘naptime’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nardl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘narray.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nasadata’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘nasapower.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘natural’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘nbc4vavignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NBDesign’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NB.MClust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nbpMatching’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NBPSeq’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ncappc’:
 .onLoad failed in loadNamespace() for ‘Cairo’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Cairo/libs/Cairo.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Cairo/libs/Cairo.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NCA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Running examples in ‘ncdf4.helpers-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: nc.make.time.bounds
> ### Title: Creates time bounds for a time series
> ### Aliases: nc.make.time.bounds
> 
> ### ** Examples
> 
> library(PCICt)
Error: package or namespace load failed for ‘PCICt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PCICt/libs/PCICt.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PCICt/libs/PCICt.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ncdf4’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ncdf4/libs/ncdf4.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ncdf4/libs/ncdf4.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ncdf.tools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RNetCDF/libs/RNetCDF.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RNetCDF/libs/RNetCDF.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ncdump’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ncmeta’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RNetCDF/libs/RNetCDF.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RNetCDF/libs/RNetCDF.so: failed to map segment from shared object
Execution halted
Running examples in ‘NCmisc-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: has.method
> ### Title: Determine whether a function can be applied to an S4
> ###   class/object
> ### Aliases: has.method
> 
> ### ** Examples
> 
> require(Matrix); require(methods)
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
> has.method("t","dgeMatrix") # t() is the transpose method for a dgeMatrix object
Error in has.method("t", "dgeMatrix") : 
  't' was not an S4 generic function or required package not loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ncpen’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NCSampling’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/yaImpute/libs/yaImpute.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/yaImpute/libs/yaImpute.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NCutYX’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ncvreg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ncvreg/libs/ncvreg.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ncvreg/libs/ncvreg.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ndjson’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ndl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NEArender’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: nbpMatching
Error: package or namespace load failed for ‘nbpMatching’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘nbpMatching’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘neariso’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/neariso/libs/neariso.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/neariso/libs/neariso.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘neatmaps’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘neat-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: neat
> ### Title: Performs neat for lists of gene sets
> ### Aliases: neat pvalue neatc
> ### Keywords: htest
> 
> ### ** Examples
> 
> # Example 1: network given as adjacency matrix:
> A = matrix(0, nrow=7, ncol=7)
> A[1,c(2,3)]=1; A[2,c(5,7)]=1;A[3,c(1,4)]=1;A[4,c(2,5,7)]=1;A[6,c(2,5)]=1;A[7,4]=1
> labels = letters[1:7]
> set1 = c('a','e')
> set2 = c('c','g')
> set3 = c('d','f')
> alist = list('set 1' = set1, 'set 2' = set2)
> blist = list('set 3' = set3)
> 
> test1 = neat(alist = alist, blist = blist, network=A, 
+              nettype='directed', nodes=labels, alpha=0.05)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Calls: neat ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘neat.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running ‘run_tests.R’ [0s/0s]
Running the tests in ‘tests/run_tests.R’ failed.
Complete output:
  > 
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘negenes’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/negenes/libs/negenes.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/negenes/libs/negenes.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘neighbr-help.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: optimbase
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘neonUtilities’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘neotoma’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nesRdata’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NestedCategBayesImpute’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running ‘test_interface.R’ [1s/1s]
  Comparing ‘test_interface.Rout’ to ‘test_interface.Rout.save’ ... OK
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘nestedRanksTest.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nestfs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dgof/libs/dgof.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dgof/libs/dgof.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘netCoin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NetComp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Running examples in ‘netcom-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: align
> ### Title: Network Alignment
> ### Aliases: align
> 
> ### ** Examples
> 
> # The two networks to be aligned
> net_one <- matrix(runif(25,0,1), nrow=5, ncol=5)
> net_two <- matrix(runif(25,0,1), nrow=5, ncol=5)
> 
> align(net_one, net_two)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Calls: align ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘netdep’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘netdiffuseR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: corpcor
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘netgwas’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘netjack-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: diff_test
> ### Title: Test for differences from original statistic
> ### Aliases: diff_test
> 
> ### ** Examples
> 
> data(GroupA)
> GroupA_Net = as_NetSample(GroupA, 1:20, node.variables = list(community = c(rep(1, 10), rep(2,10))),
+   sample.variables = list(group = c(rep(1, 10), rep(2,10))))
> Jackknife_GroupA_Net = net_apply(GroupA_Net, node_jackknife)
> GlobEff_GroupA_Net = net_stat_apply(Jackknife_GroupA_Net, global_efficiency)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Calls: net_stat_apply ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘developingNetjack.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: meta
Loading 'meta' package (version 4.9-3).
Type 'help(meta)' for a brief overview.
Error: package or namespace load failed for ‘netmeta’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NetOrigin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NetPreProc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/graph/libs/BioC_graph.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/graph/libs/BioC_graph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘netrankr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘netregR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NetRep’:
 .onLoad failed in loadNamespace() for ‘RhpcBLASctl’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RhpcBLASctl/libs/RhpcBLASctl.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RhpcBLASctl/libs/RhpcBLASctl.so: failed to map segment from shared object
Execution halted
Running examples in ‘net.security-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: DataSetStatus
> ### Title: Shows data set basic information
> ### Aliases: DataSetStatus
> 
> ### ** Examples
> 
> DataSetStatus("cves")
[1] "-: CVES dataset:"
[1] " |- Last update for CVES dataset at 2017-06-10"
[1] " |- Data set with 1000 rows and 25 variables."
Error: .onLoad failed in loadNamespace() for 'XML', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘netSEM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nets’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘netweaver.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NetworkComparisonTest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘networkD3’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NetworkDistance’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: networkDynamic
Loading required package: network
Error: package or namespace load failed for ‘network’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/network/libs/network.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/network/libs/network.so: failed to map segment from shared object
Error: package ‘network’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NetworkExtinction’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘networkGen’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NetworkInference’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘network’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/network/libs/network.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/network/libs/network.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘networkreporting’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘networkTomography’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KFAS/libs/KFAS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/KFAS/libs/KFAS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NetworkToolbox’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘networktools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NeuralNetTools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘neurohcp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tidyverse
Error: package or namespace load failed for ‘tidyverse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Error: package ‘tidyverse’ could not be loaded
Execution halted
Running examples in ‘neutralitytestr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: lsq_plot
> ### Title: Plot cumulative distribution 'lsq_plot' Plots the cumulative
> ###   distribution of the data as well as the best fit linear model line.
> ### Aliases: lsq_plot
> 
> ### ** Examples
> 
> lsq_plot(neutralitytest(VAFselection, fmin = 0.1, fmax = 0.25))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: lsq_plot ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘neutraltytestr.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘neverhpfilter’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘newsmap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘NFWdist.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ngram’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ngram/libs/ngram.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ngram/libs/ngram.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ngramrr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ngstk’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nhanesA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nhlscrapr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NHMSAR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ucminf/libs/ucminf.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ucminf/libs/ucminf.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NHPoisson’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Running examples in ‘nhstplot-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plotchisqtest
> ### Title: Illustrate a Chi-Squared Test graphically.
> ### Aliases: plotchisqtest
> 
> ### ** Examples
> 
> #Making a chi-squared plot with Chi-squared of 8 and df of 4
> plotchisqtest(chisq = 8, df = 4)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: plotchisqtest ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘nhstplot.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nice/libs/nice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nice/libs/nice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nima’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nimble’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘nipals_algorithm.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NipponMap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NIPTeR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: fdasrvf
Error: package or namespace load failed for ‘fdasrvf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘fdasrvf’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: httr
Loading required package: dplyr
Error: package or namespace load failed for ‘dplyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Error: package ‘dplyr’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nlaR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rappdirs/libs/rappdirs.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rappdirs/libs/rappdirs.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: a4Core
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Error: package or namespace load failed for ‘Biobase’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Biobase/libs/Biobase.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Biobase/libs/Biobase.so: failed to map segment from shared object
Error: package ‘Biobase’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nleqslv’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nleqslv/libs/nleqslv.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nleqslv/libs/nleqslv.so: failed to map segment from shared object
Execution halted
Running examples in ‘nlgeocoder-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: nl_free
> ### Title: Free geocoding search
> ### Aliases: nl_free
> 
> ### ** Examples
> 
> l <- nl_free("Henri Faasdreef 312")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Calls: nl_free ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nlme’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nlmeU’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nlmixr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NLMR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nlnet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TSP/libs/TSP.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TSP/libs/TSP.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nloptr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/libs/nloptr.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/libs/nloptr.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NLPutils’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SnowballC/libs/SnowballC.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SnowballC/libs/SnowballC.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nlr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nlrr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: orthopolynom
Loading required package: polynom
Error: package or namespace load failed for ‘nlsem’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nlshrink’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘nls.multstart-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Chlorella_TRC
> ### Title: Example metabolic thermal response curves
> ### Aliases: Chlorella_TRC
> ### Keywords: dataset
> 
> ### ** Examples
> 
> data("Chlorella_TRC")
> library(ggplot2)
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nlsr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nlstimedist’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘NlsyLinks-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: AceLavaanGroup
> ### Title: A simple multiple-group ACE model with the 'lavaan' package.
> ### Aliases: AceLavaanGroup
> ### Keywords: ACE
> 
> ### ** Examples
> 
> library(NlsyLinks) #Load the package into the current R session.
> dsLinks <- Links79PairExpanded #Start with the built-in data.frame in NlsyLinks
> dsLinks <- dsLinks[dsLinks$RelationshipPath=='Gen2Siblings', ] #Use only Gen2 Siblings (NLSY79-C)
> 
> oName_S1 <- "MathStandardized_S1" #Stands for Outcome1
> oName_S2 <- "MathStandardized_S2" #Stands for Outcome2
> 
> dsGroupSummary <- RGroupSummary(dsLinks, oName_S1, oName_S2)
> dsClean <- CleanSemAceDataset(dsDirty=dsLinks, dsGroupSummary, oName_S1, oName_S2)
> 
> ace <- AceLavaanGroup(dsClean)
Error: .onLoad failed in loadNamespace() for 'mnormt', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mnormt/libs/mnormt.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object
Execution halted
Running ‘test-all.R’ [0s/0s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > #Modeled after the R6 testing structure: https://github.com/wch/R6/blob/master/tests/testthat.R
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Faq.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Running examples in ‘nLTT-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: exampleTrees
> ### Title: example trees to test the functionality of the package
> ### Aliases: exampleTrees
> ### Keywords: datasets
> 
> ### ** Examples
> 
>  data(exampleTrees);
>  obs <- exampleTrees[[1]];
>  nltt_plot(obs);
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: nltt_plot ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘get_nltt_values.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘nmaINLA.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nmathresh’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nmfem’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nmfgpu4R’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: pkgmaker
Loading required package: registry
Error: package or namespace load failed for ‘pkgmaker’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘pkgmaker’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Nmisc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nmixgof’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nmslibR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nnetpredint’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nnet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnet/libs/nnet.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnet/libs/nnet.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: sf
Error: package or namespace load failed for ‘sf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘sf’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NNLM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nnls’:
 .onLoad failed in loadNamespace() for ‘nnls’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnls/libs/nnls.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnls/libs/nnls.so: failed to map segment from shared object
Execution halted
Running examples in ‘NNMIS-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: NNMIS
> ### Title: Nearest Neighbor Based Multiple Imputation for Survival Data
> ###   with Mssing Covariates (NNMIS)
> ### Aliases: NNMIS
> 
> ### ** Examples
> 
> # load required packages
> library(NNMIS)
> library(survival)
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NNTbiomarker’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nnTensor’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dotCall64/libs/dotCall64.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dotCall64/libs/dotCall64.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘noaastormevents’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NOAAWeather’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nodbi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nodeHarvest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nodiv’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nofrills’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Running examples in ‘NoiseFiltersR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: EF
> ### Title: Ensemble Filter
> ### Aliases: EF EF.default EF.formula
> 
> ### ** Examples
> 
> data(iris)
> # We fix a seed since there exists a random partition for the ensemble
> set.seed(1)
> out <- EF(Species~., data = iris, consensus = FALSE)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: EF ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘NoiseFiltersR.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘noise’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/preprocessCore/libs/preprocessCore.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/preprocessCore/libs/preprocessCore.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nomclust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nomisr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nomogramEx’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘noncompliance’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘noncomplyR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nonlinearICP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/randomForest/libs/randomForest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/randomForest/libs/randomForest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nonlinearTseries’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nonmemica’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nonnest2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/CompQuadForm/libs/CompQuadForm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/CompQuadForm/libs/CompQuadForm.so: failed to map segment from shared object
Execution halted
Depends: includes the non-default packages:
  ‘lpSolve’ ‘gdata’ ‘Hmisc’ ‘rms’ ‘geometry’ ‘psych’ ‘pwt’
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NonpModelCheck’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: enviPat
Error: package or namespace load failed for ‘enviPat’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/enviPat/libs/enviPat.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/enviPat/libs/enviPat.so: failed to map segment from shared object
Error: package ‘enviPat’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nopaco’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mlogit
Loading required package: Formula
Loading required package: maxLik
Loading required package: miscTools
Error: package or namespace load failed for ‘maxLik’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘maxLik’ could not be loaded
Execution halted
Running examples in ‘nor1mix-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: clus2norMix
> ### Title: Transform Clustering / Grouping to Normal Mixture
> ### Aliases: clus2norMix
> ### Keywords: cluster models
> 
> ### ** Examples
> 
> x9 <- rnorMix(500, MW.nm9)
> require("cluster")
Loading required package: cluster
Error: package or namespace load failed for ‘cluster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cluster/libs/cluster.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
> pxc <- pam(x9, k=3)
Error in pam(x9, k = 3) : could not find function "pam"
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nord’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘norm2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/norm2/libs/norm2.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/norm2/libs/norm2.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NormalBetaPrime’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NormalizeMets’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NormalLaplace’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/DistributionUtils/libs/DistributionUtils.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/DistributionUtils/libs/DistributionUtils.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘normalr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NormPsy’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘norm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/norm/libs/norm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/norm/libs/norm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NORMT3’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/NORMT3/libs/NORMT3.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/NORMT3/libs/NORMT3.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NORRRM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘NORTARA.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: astsa
Error: package or namespace load failed for ‘nortestARMA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nortestARMA/libs/nortestARMA.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nortestARMA/libs/nortestARMA.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nos’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: splines
Error: package or namespace load failed for ‘not’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/not/libs/not.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/not/libs/not.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nowcasting’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nparACT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nparMD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/matrixStats/libs/matrixStats.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/matrixStats/libs/matrixStats.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nparsurv’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘npbr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘npcopTest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/npcopTest/libs/npcopTest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/npcopTest/libs/npcopTest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘npcp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/npcp/libs/npcp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/npcp/libs/npcp.so: failed to map segment from shared object
Execution halted
Running examples in ‘NPC-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: NPC
> ### Title: Nonparametric Combination of Dependent Hypothesis Tests
> ### Aliases: NPC
> ### Keywords: ~kwd1 ~kwd2
> 
> ### ** Examples
> 
> 
> library(NPC)
> ## Required for this example
> library(mvtnorm)
Error: package or namespace load failed for ‘mvtnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NPHazardRate’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ez
Error: package or namespace load failed for ‘ez’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘ez’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘nplr.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘npmlreg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/statmod/libs/statmod.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/statmod/libs/statmod.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tcltk
Loading required package: gWidgets
Error: package or namespace load failed for ‘NPMOD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘np’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘npregfast’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nprobust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nproc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘npROCRegression’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nprotreg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Formula
Error: package or namespace load failed for ‘npsf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/npsf/libs/npsf.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/npsf/libs/npsf.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NPsimex’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/NPsimex/libs/NPsimex.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/NPsimex/libs/NPsimex.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘npsp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘npsr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘npst’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/npst/libs/npst.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/npst/libs/npst.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NRejections’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘basic_use_nsapi_package.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Depends: includes the non-default packages:
  ‘R.methodsS3’ ‘MASS’ ‘matrixStats’ ‘R.oo’ ‘R.utils’ ‘aroma.core’
  ‘aroma.affymetrix’ ‘DNAcopy’
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: R.methodsS3
R.methodsS3 v1.7.1 (2016-02-15) successfully loaded. See ?R.methodsS3 for help.
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NScluster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/NScluster/libs/NScluster.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/NScluster/libs/NScluster.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nscprepr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nseval’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nseval/libs/nseval.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nseval/libs/nseval.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mco
Error: package or namespace load failed for ‘mco’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mco/libs/mco.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mco/libs/mco.so: failed to map segment from shared object
Error: package ‘mco’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nsgp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: combinat

Attaching package: ‘combinat’

The following object is masked from ‘package:utils’:

    combn

Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nsRFA’:
 .onLoad failed in loadNamespace() for ‘nsRFA’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nsRFA/libs/nsRFA.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nsRFA/libs/nsRFA.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nsROC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NSUM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NTS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dlm/libs/dlm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dlm/libs/dlm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nullabor’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘numbersBR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Numero’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘numform’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/glue/libs/glue.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/glue/libs/glue.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘numKM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘numOSL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/numOSL/libs/numOSL.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/numOSL/libs/numOSL.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘NutrienTrackeR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘nutshell.audioscrobbler-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: audioscrobbler
> ### Title: Audioscrobbler User Data
> ### Aliases: audioscrobbler
> ### Keywords: datasets
> 
> ### ** Examples
> 
> library(arules)
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Running examples in ‘nutshell.bbdb-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bb.db
> ### Title: 2008 Baseball Databank Database
> ### Aliases: bb.db
> ### Keywords: datasets
> 
> ### ** Examples
> 
> library(RSQLite)
Error: package or namespace load failed for ‘RSQLite’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘nutshell-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GSE2034
> ### Title: Breast cancer relapse free survival
> ### Aliases: GSE2034
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(GSE2034)
> library(survival)
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Matrix/libs/Matrix.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Matrix/libs/Matrix.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nVennR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nvmix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/qrng/libs/qrng.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/qrng/libs/qrng.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘nycflights13’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Running examples in ‘nzelect-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GE2014
> ### Title: General Election Results 2014
> ### Aliases: GE2014
> ### Keywords: datasets
> 
> ### ** Examples
> 
> # the following matches the results published at
> # http://www.electionresults.govt.nz/electionresults_2014/e9/html/e9_part1.html
> library(tidyr)
Error: package or namespace load failed for ‘tidyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘oaColors’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OAIHarvester’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘oai’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘oak’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: oaColors
Error: package or namespace load failed for ‘oaColors’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘oaColors’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘oaqc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/oaqc/libs/oaqc.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/oaqc/libs/oaqc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘oasis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Running examples in ‘OasisR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ACE
> ### Title: A function to compute Massey Absolute Centralisation Index (ACE)
> ### Aliases: ACE
> 
> ### ** Examples
> 
> x <- segdata@data[ ,1:2]
> ar<-area(segdata)
> distc<- distcenter(segdata, center = 28)
Loading required package: sp
Error: package or namespace load failed for ‘sp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error in .requirePackage(package) : unable to find required package ‘sp’
Calls: distcenter ... .extendsForS3 -> extends -> getClassDef -> .requirePackage
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘Dimensions_of_segregation.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘oaxaca’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘obAnalytics’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘obliclus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/obliclus/libs/obliclus.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/obliclus/libs/obliclus.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘obliqueRSF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Observation.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘observer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OBsMD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/OBsMD/libs/OBsMD.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/OBsMD/libs/OBsMD.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: plot3D
Loading required package: plot3Drgl
Loading required package: rgl
Error: package or namespace load failed for ‘rgl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘rgl’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: flexclust
Loading required package: grid
Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lattice’ could not be loaded
Execution halted
Running examples in ‘OData-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: entitySets
> ### Title: Get a list of EntitySets for a web service base on OData
> ### Aliases: entitySets
> 
> ### ** Examples
> 
> entitySets("http://services.odata.org/TripPinRESTierService/?$format=json")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RJSONIO/libs/RJSONIO.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RJSONIO/libs/RJSONIO.so: failed to map segment from shared object
Calls: entitySets ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘odbc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: DBI
Loading required package: RJDBC
Loading required package: rJava
Error: package or namespace load failed for ‘rJava’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Error: package ‘rJava’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘oddsratio’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘odeintr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: checkmate
Error: package or namespace load failed for ‘checkmate’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Error: package ‘checkmate’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘odk’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘odpc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘oec’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘officer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Ohmage’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OHPL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘ohtadstats-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: dheatmap
> ### Title: Heatmap Plot
> ### Aliases: dheatmap
> 
> ### ** Examples
> 
> data(miyashita_langley_data)
> miyashita_langley_subset <- miyashita_langley_data[,1:15]
> ml_results <- dwrapper(miyashita_langley_subset)
> dheatmap(ml_results[["d2it_mat"]], mode = 'linear')
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Calls: dheatmap ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Running examples in ‘oii-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: oii.summary
> ### Title: Print summary statistics for a numeric variable
> ### Aliases: oii.summary
> 
> ### ** Examples
> 
> 
> #Generate data from a normal distribution with mean 0 and sd 1
> #store the result in a variable called tmp
> tmp<-rnorm(500,mean=0,sd=1)
> 
> #Print the summary statistics about tmp
> oii.summary(tmp)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: oii.summary
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘okmesonet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘olctools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘olsrr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Error: package or namespace load failed for ‘OmicKriging’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OmicsPLS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘omics’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Omisc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ompr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ompr.roi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘omu’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...

Error: processing vignette ‘RoeDeerMass-simulation.Rnw’ failed with diagnostics:
 chunk 6 (label = testTF) 
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Loading required package: boot
Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object

Error: processing vignette ‘Oncotree_vignette.Rnw’ failed with diagnostics:
 chunk 10 (label = Marg2way) 
Error in levelplot(oe.diff, xlab = "", ylab = "", scales = list(x = list(alternating = 2),  : 
  could not find function "levelplot"
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘onehot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/onehot/libs/onehot.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/onehot/libs/onehot.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘onemap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
In addition: Warning message:
loading Rplot failed 
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘OneR.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘onewaytests’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘onion’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/onion/libs/onion.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/onion/libs/onion.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: RSpectra
Error: package or namespace load failed for ‘RSpectra’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘RSpectra’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘onlineVAR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘onnx’:
 .onLoad failed in loadNamespace() for ‘onnx’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘intro-to-ontologyX.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ontologyPlot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/graph/libs/BioC_graph.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/graph/libs/BioC_graph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ontologySimilarity’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘oompaBase’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OpasnetUtils’:
 .onLoad failed in loadNamespace() for ‘rjson’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rjson/libs/rjson.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rjson/libs/rjson.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘openadds’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘openair’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘opencage’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OpenCL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/OpenCL/libs/OpenCL.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/OpenCL/libs/OpenCL.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘opencpu’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: secr
Error: package or namespace load failed for ‘secr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘secr’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘openEBGM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OpenImageR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OpenMPController’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/OpenMPController/libs/OpenMPController.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/OpenMPController/libs/OpenMPController.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OpenMx’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘openNLPdata’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘openNLP’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OpenRepGrid’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Running examples in ‘opensensmapr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: osem_measurements_archive
> ### Title: Fetch day-wise measurements for a single box from the
> ###   openSenseMap archive.
> ### Aliases: osem_measurements_archive osem_measurements_archive.sensebox
> 
> ### ** Examples
> 
> # fetch measurements for a single day
> box = osem_box('593bcd656ccf3b0011791f5a')
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Calls: osem_box ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library('testthat')
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘osem-history.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘openssl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/openssl/libs/openssl.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/openssl/libs/openssl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OpenStreetMap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘opentraj’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘openVA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘openxlsx’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘opera-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mixture
> ### Title: Compute an aggregation rule
> ### Aliases: mixture print.mixture summary.mixture
> ### Keywords: ~kwd1 ~kwd2
> 
> ### ** Examples
> 
> #' 
> library('opera')  # load the package
> set.seed(1)
> 
> # Example: find the best one week ahead forecasting strategy (weekly data)
> # packages
> library(mgcv)
Loading required package: nlme
Error: package or namespace load failed for ‘nlme’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nlme/libs/nlme.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nlme/libs/nlme.so: failed to map segment from shared object
Error: package ‘nlme’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘opera-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Opt5PL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘optband-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cumhaz.var
> ### Title: Variance of the cumulative-hazard function
> ### Aliases: cumhaz.var
> ### Keywords: internal
> 
> ### ** Examples
> 
> 
> library(survival)
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/survival/libs/survival.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/survival/libs/survival.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rpanel
Loading required package: tcltk
Package `rpanel', version 1.1-4: type help(rpanel) for summary information
Loading required package: rgl
Error: package or namespace load failed for ‘rgl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘rgl’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘optCluster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/class/libs/class.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/class/libs/class.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: neldermead
Loading required package: optimbase
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OptGS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/OptGS/libs/OptGS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/OptGS/libs/OptGS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OptHedging’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/OptHedging/libs/OptHedging.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/OptHedging/libs/OptHedging.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: pbapply
Error: package or namespace load failed for ‘opticut’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘optigrab’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OptimalTiming’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OptimClassifier’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘voptimr.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘optimus-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: find_optimal
> ### Title: Find an optimal classification among competing clustering
> ###   solutions
> ### Aliases: find_optimal
> ### Keywords: optimal, partition, partitioning
> 
> ### ** Examples
> 
> 
> ## Prep the 'swamps' data
> ## ======================
> 
> data(swamps) # see ?swamps
> swamps <- swamps[,-1]
> 
> ## Assess clustering solutions using cutree() method
> ## =================================================
> 
> ## perhaps not the best clustering option, but this is base R
> swamps_hclust <- hclust(d = dist(x = log1p(swamps), method = "canberra"),
+                        method = "complete")
> 
> ## calculate sum-of-AIC values for 10:25 clusters, using the hclust() output
> swamps_hclust_aics <- find_optimal(data = swamps, clustering = swamps_hclust,
+ family = "poisson", cutreeLevels = 10:25)
clustering= object WILL work with cutree(), setting cutree=TRUE
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: find_optimal ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘optimus-workflow.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Extend-optimx.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘UserGuide.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘optionstrat_vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘optiRum’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘optiSel’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/minpack.lm/libs/minpack.lm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/minpack.lm/libs/minpack.lm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘optismixture’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘optiSolve’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/minpack.lm/libs/minpack.lm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/minpack.lm/libs/minpack.lm.so: failed to map segment from shared object
Execution halted
Running ‘run-all.R’ [0s/0s]
  Running ‘test_help.R’ [0s/0s]
  Comparing ‘test_help.Rout’ to ‘test_help.Rout.save’ ... OK
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
  > library("testthat")
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘optparse.Rrst’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Running examples in ‘optrdd-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: optrdd
> ### Title: Optimized regression discontinuity design
> ### Aliases: optrdd
> 
> ### ** Examples
> 
> # Simple regression discontinuity with discrete X
> n = 4000; threshold = 0
> X = sample(seq(-4, 4, by = 8/41.5), n, replace = TRUE)
> W = as.numeric(X >= threshold)
> Y = 0.4 * W + 1 / (1 + exp(2 * X)) + 0.2 * rnorm(n)
> # using 0.4 for max.second.derivative would have been enough
> out.1 = optrdd(X=X, Y=Y, W=W, max.second.derivative = 0.5, estimation.point = threshold)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Calls: optrdd ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘optweight’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘opusminer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OpVaR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘orca’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/orca/libs/orca.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/orca/libs/orca.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ORCI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BiasedUrn/libs/BiasedUrn.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BiasedUrn/libs/BiasedUrn.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ORCME’:
 .onLoad failed in loadNamespace() for ‘Iso’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Iso/libs/Iso.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Iso/libs/Iso.so: failed to map segment from shared object
Execution halted
Running examples in ‘ordcrm-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: crmsimulations
> ### Title: Simulations to Assess operating characteristics of proportional
> ###   odds model (POM), continuation ratio (CR) Model, and binary CRM
> ###   Designs
> ### Aliases: crmsimulations
> 
> ### ** Examples
> 
> #Example 1
> #Underlying True POM dosetox
> truePO1<-c(-0.4, 0.0011, -1.3, 0.0011, -2.8, 0.0011, -3.9, 0.0011)
> #POM Pseudodata
> initial.pom.y1<-c(rep(0,45),rep(1,36),rep(2,9),rep(3,8),rep(4,2),rep(0,18),
+ rep(1,35),rep(2,17),rep(3,24),rep(4,6),rep(0,8),rep(1,24),rep(2,18),rep(3,38),
+ rep(4,12),rep(0,1),rep(1,4),rep(2,5),rep(3,35),rep(4,55))
> initial.pom.d1<-c(rep(200,100),rep(1067,100),rep(1613,100),rep(3000,100))
> #POM CRM Design Simulation run 10 times, with a true dosetox model equal to a POM
> crmsimulations(startdose = 1060, numbersims = 10, cohortsize = 3, samplesize = 30,
+ pseudoweights = 3,pseudotox = initial.pom.y1, pseudodose = initial.pom.d1, dosetox = truePO1,
+ truedosetoxmodeltype = 'POM', design = 'POM', targetDLT = 0.30, discrete = FALSE,
+ discretedoses = NA, numberdltrule = NA, lowerlimitrule = NA, upperlimitrule = NA,
+ dltrule = NA, increaserule= NA, minimum = NA, maximum = NA, combine01 = FALSE)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/survival/libs/survival.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/survival/libs/survival.so: failed to map segment from shared object
Calls: crmsimulations -> fiterations
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ordinalClust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ordinalForest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ordinal’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ucminf/libs/ucminf.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ucminf/libs/ucminf.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: grplasso
Loading required package: mgcv
Loading required package: nlme
Error: package or namespace load failed for ‘nlme’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘nlme’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ore’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ore/libs/ore.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ore/libs/ore.so: failed to map segment from shared object
Execution halted
Running examples in ‘ores-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: check_damaging
> ### Title: Check Damaging Probability
> ### Aliases: check_damaging
> 
> ### ** Examples
> 
> # A simple, single-diff example
> damaging_data <- check_damaging("enwiki", 34854345)
Error in is.url(url) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Calls: check_damaging ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Running examples in ‘OrgMassSpecR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: IsotopicDistribution
> ### Title: Isotopic Distribution of an Organic Molecule.
> ### Aliases: IsotopicDistribution
> 
> ### ** Examples
> 
> x <- IsotopicDistribution(formula = list(C = 9, H = 4, Br = 5, Cl = 1, N = 2))
> library(lattice)
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘OrgMassSpecR-examples.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ggthemes
Error: package or namespace load failed for ‘ggthemes’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘ggthemes’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘origami’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘originr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: orloca
Loading required package: png
Error: package or namespace load failed for ‘png’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/png/libs/png.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/png/libs/png.so: failed to map segment from shared object
Error: package ‘png’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ORMDR’:
 .onLoad failed in loadNamespace() for ‘ORMDR’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ORMDR/libs/ORMDR.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ORMDR/libs/ORMDR.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Loading required package: oro.dicom

oro.dicom: Rigorous - DICOM Input / Output (version = 0.5.0)

Loading required package: oro.nifti
Error: package or namespace load failed for ‘oro.nifti’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object

Error: processing vignette ‘dicom.Rnw’ failed with diagnostics:
 chunk 14 (label = DICOM Siemens 02) 
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘oro.nifti’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘oro.pet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/minpack.lm/libs/minpack.lm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/minpack.lm/libs/minpack.lm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘orsk’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘orthoDr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OrthoPanels’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘osDesign’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/osDesign/libs/osDesign.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/osDesign/libs/osDesign.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘osd’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Execution halted
Running ‘run.R’ [0s/0s]
Running the tests in ‘tests/run.R’ failed.
Complete output:
  > library(unitizer)
  Error: package or namespace load failed for 'unitizer' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/diffobj/libs/diffobj.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/diffobj/libs/diffobj.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘osmdata’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘osmose’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘osmplotr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OSMscale’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘osqp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘osrm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘osrmr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: decode_geom
> ### Title: Transform encoded polylines to lat-lng data.frame.
> ### Aliases: decode_geom
> 
> ### ** Examples
> 
> decoded_api_4 <- decode_geom(osrmr::encoded_string_api_4, precision = 5)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Calls: decode_geom ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘osrmr.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OSTSC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OTE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/randomForest/libs/randomForest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/randomForest/libs/randomForest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘otrimle’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mclust/libs/mclust.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mclust/libs/mclust.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘otvPlots’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: subplex
Error: package or namespace load failed for ‘subplex’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/subplex/libs/subplex.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/subplex/libs/subplex.so: failed to map segment from shared object
Error: package ‘subplex’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘outbreaker2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Error: package or namespace load failed for ‘outbreaker’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘outcomerate’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OutlierDM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘OutliersO3’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/leaps/libs/leaps.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/leaps/libs/leaps.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘outreg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘overlap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/overlap/libs/overlap.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/overlap/libs/overlap.so: failed to map segment from shared object
Execution halted
Running examples in ‘OWEA-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: design
> ### Title: Design Generator for Three Models
> ### Aliases: design
> 
> ### ** Examples
> 
> # NOTE: max_iter is usually set to 40. 
> # Here max_iter = 5 is for demenstration only.
> # crossover dropout model
> ## D-optimal
> 
> example1 <- design('dropout',10,0,3,3,drop=c(0,0,0.5), max_iter = 5)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Calls: design ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘oxcAAR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘oXim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Packages suggested but not available for checking:
  ‘genealogicalSorting’ ‘phybase’
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘P2C2M’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘packagedocs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: magrittr
Error: package or namespace load failed for ‘packagetrackr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘packcircles’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running ‘test-all.R’ [0s/0s]
  Running ‘test-cranlike-repositories.R’ [1s/1s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Introduction_to_pacman.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Running examples in ‘paco-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: PACo
> ### Title: Performs PACo analysis.
> ### Aliases: PACo
> 
> ### ** Examples
> 
> data(gopherlice)
> require(ape)
Loading required package: ape
Error: package or namespace load failed for ‘ape’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nlme/libs/nlme.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nlme/libs/nlme.so: failed to map segment from shared object
> gdist <- cophenetic(gophertree)
Error in as.hclust.default(x) : 
  argument 'x' cannot be coerced to class “hclust”
 Consider providing an as.hclust.phylo() method
Calls: cophenetic ... cophenetic.default -> as.hclust -> as.hclust.default
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pacotest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PAC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pact’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘padr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: exams
Loading required package: stringr
Error: package or namespace load failed for ‘stringr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Error: package ‘stringr’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PAFit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘pagenum-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pagenum
> ### Title: Put Page Numbers on Graphics
> ### Aliases: pagenum setPagenum getPagenum setPagenum getPagenum
> 
> ### ** Examples
> 
> # base graphics
> setPagenum(1)
> plot(Sepal.Length~Sepal.Width, data=iris, col=Species, pch=19)
> pagenum()
> 
> # lattice, date
> setPagenum(getPagenum()+1) # Manual increment
> require(lattice)
Loading required package: lattice
> xyplot(Sepal.Length~Sepal.Width, data=iris, groups=Species)
> pagenum(date=TRUE)
> 
> # ggplot2, top-right
> require(ggplot2)
Loading required package: ggplot2
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
> ggplot(iris, aes(x=Sepal.Width, y=Sepal.Length,
+   color=Species)) + geom_point() + theme_classic()
Error in ggplot(iris, aes(x = Sepal.Width, y = Sepal.Length, color = Species)) : 
  could not find function "ggplot"
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘pagenum_examples.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pageviews’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pairsD3’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: TSP
Error: package or namespace load failed for ‘TSP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TSP/libs/TSP.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TSP/libs/TSP.so: failed to map segment from shared object
Error: package ‘TSP’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: MCPAN
Error: package or namespace load failed for ‘MCPAN’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘MCPAN’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PakPC2017’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PakPMICS2014Ch’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PakPMICS2014HH’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PakPMICS2014HL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PakPMICS2014Wm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Running examples in ‘palasso-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: palasso
> ### Title: Paired lasso
> ### Aliases: palasso palasso-package
> 
> ### ** Examples
> 
> set.seed(1)
> n <- 50; p <- 20
> y <- rbinom(n=n,size=1,prob=0.5)
> X <- lapply(1:2,function(x) matrix(rnorm(n*p),nrow=n,ncol=p))
> object <- palasso(y=y,X=X,family="binomial")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/glmnet/libs/glmnet.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/glmnet/libs/glmnet.so: failed to map segment from shared object
Calls: palasso ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘article.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: GCD
Error: package or namespace load failed for ‘paleofire’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘paleoTS’:
 .onLoad failed in loadNamespace() for ‘mnormt’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mnormt/libs/mnormt.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object
Execution halted
Running examples in ‘paletteer-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: paletteer_c
> ### Title: Get continuous palette by package and name
> ### Aliases: paletteer_c
> 
> ### ** Examples
> 
> paletteer_c(scico, berlin, 100)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: paletteer_c ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘adding-additional-packages.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘palettetown-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: scale_colour_poke
> ### Title: Add a pokemon palette to a ggplot2 colour or fill scale.
> ### Aliases: scale_color_poke scale_colour_poke scale_fill_poke
> 
> ### ** Examples
> 
> library(ggplot2)
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: gsl
Error: package or namespace load failed for ‘gsl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gsl/libs/gsl.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gsl/libs/gsl.so: failed to map segment from shared object
Error: package ‘gsl’ could not be loaded
Execution halted
Running examples in ‘palr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: oisst
> ### Title: Sea surface temperature (SST).
> ### Aliases: oisst
> 
> ### ** Examples
> 
> library(raster)
Loading required package: sp
Error: package or namespace load failed for ‘sp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘sp’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘nasa_chla.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PAmeasures’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pamm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pammtools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PANDA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pander’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘panelAR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PanelCount’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘panelvar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘panelView’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pangaear’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PANICr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pan’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pan/libs/pan.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pan/libs/pan.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘papayar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘parallelDist’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ParallelForest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ParallelForest/libs/ParallelForest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ParallelForest/libs/ParallelForest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Logging.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘parallelMap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Execution halted
Running examples in ‘ParallelPC-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: IDA_parallel
> ### Title: Estimate Total Causal Effects using the IDA_parallel Algorithm
> ### Aliases: IDA_parallel
> 
> ### ** Examples
> 
> ##########################################
> ## Using IDA_parallel without mem.efficeient
> ##########################################
> library(bnlearn)
Error: package or namespace load failed for ‘bnlearn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bnlearn/libs/bnlearn.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bnlearn/libs/bnlearn.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: TIMP
Loading required package: fields
Loading required package: spam
Loading required package: dotCall64
Error: package or namespace load failed for ‘dotCall64’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dotCall64/libs/dotCall64.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dotCall64/libs/dotCall64.so: failed to map segment from shared object
Error: package ‘dotCall64’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ParamHelpers’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘paramlink’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Simulating-Power.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Loading required package: mboost
Loading required package: stabs
Error: package or namespace load failed for ‘mboost’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘mboost’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: grid
Error: package or namespace load failed for ‘pa’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: DNAcopy
Error: package or namespace load failed for ‘DNAcopy’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/DNAcopy/libs/DNAcopy.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/DNAcopy/libs/DNAcopy.so: failed to map segment from shared object
Error: package ‘DNAcopy’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘parglm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘parlitools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘parmigene’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/parmigene/libs/parmigene.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/parmigene/libs/parmigene.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘parmsurvfit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘parsedate’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/parsedate/libs/parsedate.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/parsedate/libs/parsedate.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘parsemsf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PARSE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘parSim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘parsnip’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PartCensReg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/GIGrvg/libs/GIGrvg.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/GIGrvg/libs/GIGrvg.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘partialAR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: partialAR
Error: package or namespace load failed for ‘partialAR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘partialAR’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘particles’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘partitionComparison’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpSolve/libs/lpSolve.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpSolve/libs/lpSolve.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘partitions’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gmp/libs/gmp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gmp/libs/gmp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: regtools
Loading required package: FNN
Error: package or namespace load failed for ‘FNN’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/FNN/libs/FNN.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/FNN/libs/FNN.so: failed to map segment from shared object
Error: package ‘FNN’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: grid
Loading required package: libcoin
Error: package or namespace load failed for ‘libcoin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘libcoin’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: grid
Loading required package: mvtnorm
Error: package or namespace load failed for ‘mvtnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘mvtnorm’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: vioplot
Loading required package: sm
Error: package or namespace load failed for ‘sm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/sm/libs/sm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/sm/libs/sm.so: failed to map segment from shared object
Error: package ‘sm’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘passport.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: caper
Loading required package: ape
Error: package or namespace load failed for ‘ape’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘ape’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘patchDVI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/patchDVI/libs/patchDVI.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/patchDVI/libs/patchDVI.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: grid
Loading required package: datautils
Loading required package: deldir
Error: package or namespace load failed for ‘deldir’:
 .onLoad failed in loadNamespace() for ‘deldir’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/deldir/libs/deldir.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/deldir/libs/deldir.so: failed to map segment from shared object
Error: package ‘deldir’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tools
Loading required package: stringr
Error: package or namespace load failed for ‘stringr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Error: package ‘stringr’ could not be loaded
Execution halted
Running examples in ‘patentsview-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: qry_funs
> ### Title: List of query functions
> ### Aliases: qry_funs
> ### Keywords: datasets
> 
> ### ** Examples
> 
> qry_funs$eq(patent_date = "2001-01-01")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Calls: <Anonymous> ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘examples.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PATHChange’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Depends: includes the non-default packages:
  ‘svmpath’ ‘kernlab’ ‘affy’ ‘Biobase’ ‘ROCR’ ‘igraph’ ‘lpSolve’
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: svmpath
Error: package or namespace load failed for ‘svmpath’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/svmpath/libs/svmpath.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/svmpath/libs/svmpath.so: failed to map segment from shared object
Error: package ‘svmpath’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘intro-pathdiagram.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: knitr
Loading required package: pathview
Loading required package: org.Hs.eg.db
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Loading required package: Biobase
Error: package or namespace load failed for ‘Biobase’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Biobase/libs/Biobase.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Biobase/libs/Biobase.so: failed to map segment from shared object
Error: package ‘Biobase’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pathmapping’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pathmapping/libs/pathmapping.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pathmapping/libs/pathmapping.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: plspm
Error: package or namespace load failed for ‘plspm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/amap/libs/amap.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/amap/libs/amap.so: failed to map segment from shared object
Error: package ‘plspm’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pathological’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PathSelectMP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘patPRO’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘patrick-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: with_parameters_test_that
> ### Title: Execute a test with parameters.
> ### Aliases: with_parameters_test_that cases
> 
> ### ** Examples
> 
> with_parameters_test_that("trigonometric functions match identities", {
+     testthat::expect_equal(expr, numeric_value)
+   },
+   expr = c(sin(pi / 4), cos(pi / 4), tan(pi / 4)),
+   numeric_value = c(1 / sqrt(2), 1 / sqrt(2), 1)
+ )
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: with_parameters_test_that ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # Copyright 2018 Google LLC
  > #
  > # Licensed under the Apache License, Version 2.0 (the "License");
  > # you may not use this file except in compliance with the License.
  > # You may obtain a copy of the License at
  > #
  > #     http://www.apache.org/licenses/LICENSE-2.0
  > #
  > # Unless required by applicable law or agreed to in writing, software
  > # distributed under the License is distributed on an "AS IS" BASIS,
  > # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  > # See the License for the specific language governing permissions and
  > # limitations under the License.
  > 
  > library(patrick)
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘patternator’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘patternize’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘patternplot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pavo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/geometry/libs/geometry.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/geometry/libs/geometry.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pawacc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SparseM/libs/SparseM.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SparseM/libs/SparseM.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pawls’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pawls/libs/pawls.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pawls/libs/pawls.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pbatR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pbdBASE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlecuyer/libs/rlecuyer.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlecuyer/libs/rlecuyer.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pbdMPI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlecuyer/libs/rlecuyer.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlecuyer/libs/rlecuyer.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pbdNCDF4’:
 .onLoad failed in loadNamespace() for ‘pbdNCDF4’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pbdNCDF4/libs/pbdNCDF4.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pbdNCDF4/libs/pbdNCDF4.so: failed to map segment from shared object
Execution halted
Running examples in ‘PBD-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pbd_ML
> ### Title: Maximization of loglikelihood under protracted birth-death model
> ###   of diversification
> ### Aliases: pbd_ML
> ### Keywords: models
> 
> ### ** Examples
> 
> pbd_ML(1:10,initparsopt = c(4.640321,4.366528,0.030521), exteq = 1)
You are optimizing b mu_1 lambda_1 
You are fixing nothing 
Extinction rate of incipient species is exactly the same as for good species.
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/deSolve/libs/deSolve.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/deSolve/libs/deSolve.so: failed to map segment from shared object
Calls: pbd_ML ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘PBD_ML_demo.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rlecuyer
Error: package or namespace load failed for ‘rlecuyer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlecuyer/libs/rlecuyer.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlecuyer/libs/rlecuyer.so: failed to map segment from shared object
Error: package ‘rlecuyer’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pbdZMQ’:
 .onLoad failed in loadNamespace() for ‘pbdZMQ’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pbdZMQ/libs/pbdZMQ.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pbdZMQ/libs/pbdZMQ.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PBImisc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pbivnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pbivnorm/libs/pbivnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pbivnorm/libs/pbivnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Loading required package: future
Error: package or namespace load failed for ‘future’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘future’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PBRF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PBRF/libs/PBRF.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PBRF/libs/PBRF.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: PBSmodelling
Error: package or namespace load failed for ‘PBSmodelling’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Error: package ‘PBSmodelling’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PBSddesolve’:
 .onLoad failed in loadNamespace() for ‘PBSddesolve’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PBSddesolve/libs/PBSddesolve.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PBSddesolve/libs/PBSddesolve.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PBSmapping’:
 .onLoad failed in loadNamespace() for ‘PBSmapping’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PBSmapping/libs/PBSmapping.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PBSmapping/libs/PBSmapping.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PBSmodelling’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pbv’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pca3d’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PCA4TS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Execution halted
Running examples in ‘pcaBootPlot-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pcaBootPlot
> ### Title: Create 2D PCA Plots with Bootstrapping
> ### Aliases: pcaBootPlot
> 
> ### ** Examples
> 
> sample1=rnorm(n=100, mean=100, sd=10)
> sample2=jitter(sample1, factor=10, amount=10)
> sample3=rnorm(n=100, mean=100, sd=10)
> 
> data <- data.frame(ID=c(1:100), sample1, sample2, sample3)
> 
> pcaBootPlot(data, log2.transform = FALSE)
Performing PCA on 3 samples

Using FactoMineR for analysis. However you may be able to speed up
  computation by setting use.prcomp to TRUE

There are 0 duplicated entries 
Filtering entries based on min.val and groups...
   100 entries had at least one sample with value > 1 
Using FactoMineR for analysis
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/leaps/libs/leaps.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/leaps/libs/leaps.so: failed to map segment from shared object
Calls: pcaBootPlot ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘pcaBootPlot.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pcadapt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PCADSC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pcaL1’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pcaL1/libs/pcaL1.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pcaL1/libs/pcaL1.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pcalg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/robustbase/libs/robustbase.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/robustbase/libs/robustbase.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: epitools
Loading required package: exact2x2
Loading required package: exactci
Loading required package: ssanv

Attaching package: ‘exactci’

The following object is masked from ‘package:epitools’:

    binom.exact

Loading required package: MCMCpack
Loading required package: coda
Error: package or namespace load failed for ‘coda’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘coda’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘PCAmixdata.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: polycor
Loading required package: ltm
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pcaPP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pccc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘pcdpca-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pcdpca
> ### Title: Compute periodically correlacted DPCA filter coefficients
> ### Aliases: pcdpca
> 
> ### ** Examples
> 
> ## Prepare some process
> library(fda)
Loading required package: splines
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Running ‘pc.multivariate.R’ [0s/0s]
  Running ‘stat.R’ [0s/0s]
Running the tests in ‘tests/pc.multivariate.R’ failed.
Complete output:
  > library("freqdom")
  Loading required package: mvtnorm
  Error: package or namespace load failed for 'mvtnorm' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
  Error: package 'mvtnorm' could not be loaded
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PCDSpline’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nleqslv/libs/nleqslv.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nleqslv/libs/nleqslv.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘pcev.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  Note: possible error in 'mmer2(fixed = as.formula(cv3), ': unused arguments (draw = F, silent = T, G = list(id = Ks)) 
  Note: possible error in 'mmer2(fixed = as.formula(paste0(names(suffStat)[j], ': unused arguments (draw = F, silent = T, G = list(id = Ks)) 
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pcgen.Rcheck/00install.out’ for details.
Information on the location(s) of code generating the ‘Note’s can be
obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
to ‘yes’.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pcgen’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/robustbase/libs/robustbase.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/robustbase/libs/robustbase.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: safe
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Loading required package: Biobase
Error: package or namespace load failed for ‘Biobase’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Biobase/libs/Biobase.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Biobase/libs/Biobase.so: failed to map segment from shared object
Error: package ‘Biobase’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PCICt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PCICt/libs/PCICt.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PCICt/libs/PCICt.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pcIRT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PCIT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PCIT/libs/PCIT.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PCIT/libs/PCIT.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PCMBase’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: GPArotation
Loading required package: ThreeWay
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: SYNCSA
Error: package or namespace load failed for ‘SYNCSA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘SYNCSA’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PCRedux’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pcr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: strvalidator
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RGtk2/libs/RGtk2.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RGtk2/libs/RGtk2.so: failed to map segment from shared object
Error: package or namespace load failed for ‘strvalidator’:
 .onLoad failed in loadNamespace() for ‘RGtk2’, details:
  call: install_all()
  error: This platform is not yet supported by the automatic installer. Please install GTK+ manually, if necessary. See: http://www.gtk.org
Error: package ‘strvalidator’ could not be loaded
In addition: Warning message:
Failed to load RGtk2 dynamic library, attempting to install it. 
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pdc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pdc/libs/pdc.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pdc/libs/pdc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pdfCluster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/geometry/libs/geometry.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/geometry/libs/geometry.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pdfetch’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pdfsearch’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘convert_pdf_tables.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pdftools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pdist’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pdist/libs/pdist.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pdist/libs/pdist.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pdmod’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mco/libs/mco.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mco/libs/mco.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: jpeg
Error: package or namespace load failed for ‘jpeg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jpeg/libs/jpeg.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jpeg/libs/jpeg.so: failed to map segment from shared object
Error: package ‘jpeg’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PDN’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pdp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # Copyright 2015 Steven E. Pav. All Rights Reserved.
  > # Author: Steven E. Pav
  > 
  > # This file is part of PDQutils.
  > #
  > # PDQutils is free software: you can redistribute it and/or modify
  > # it under the terms of the GNU Lesser General Public License as published by
  > # the Free Software Foundation, either version 3 of the License, or
  > # (at your option) any later version.
  > #
  > # PDQutils is distributed in the hope that it will be useful,
  > # but WITHOUT ANY WARRANTY; without even the implied warranty of
  > # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  > # GNU Lesser General Public License for more details.
  > #
  > # You should have received a copy of the GNU Lesser General Public License
  > # along with PDQutils.  If not, see <http://www.gnu.org/licenses/>.
  > 
  > # env var:
  > # nb: 
  > # see also:
  > # todo:
  > # changelog: 
  > #
  > # Created: 2015.06.06
  > # Copyright: Steven E. Pav, 2015-2015
  > # Author: Steven E. Pav
  > # Comments: Steven E. Pav
  > 
  > # because Hadley says it should be like this.
  > # see https://github.com/hadley/devtools/wiki/Testing
  > 
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘PDQutils.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: plm
Loading required package: Formula
Error: package or namespace load failed for ‘plm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘plm’ could not be loaded
Execution halted
Running examples in ‘pds3-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pds3_lexer_parser
> ### Title: Access PDS3 Lexer & Parser
> ### Aliases: pds3_lexer_parser
> 
> ### ** Examples
> 
> util <- pds3_lexer_parser()
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rly/libs/rly.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rly/libs/rly.so: failed to map segment from shared object
Calls: pds3_lexer_parser ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘pds3.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PDSCE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PDSCE/libs/PDSCE.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PDSCE/libs/PDSCE.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pdSpecEst’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PeakError’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PeakError/libs/PeakError.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PeakError/libs/PeakError.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘peakPantheR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Biobase/libs/Biobase.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Biobase/libs/Biobase.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘peakPick-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘peakRAM.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PeakSegDisk’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PeakSegDP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PeakSegDP/libs/PeakSegDP.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PeakSegDP/libs/PeakSegDP.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PeakSegJoint’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PeakError/libs/PeakError.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PeakError/libs/PeakError.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PeakSegOptimal’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PearsonDS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PearsonDS/libs/PearsonDS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PearsonDS/libs/PearsonDS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: MasterBayes
Loading required package: coda
Error: package or namespace load failed for ‘coda’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘coda’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pedigreeTools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pedigreeTools/libs/pedigreeTools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pedigreeTools/libs/pedigreeTools.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pedometrics’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Loading required package: sandwich
Error: package or namespace load failed for ‘sandwich’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘sandwich’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PEIP’:
 .onLoad failed in loadNamespace() for ‘bvls’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bvls/libs/bvls.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bvls/libs/bvls.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘penalizedLDA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/flsa/libs/flsa.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/flsa/libs/flsa.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘penMSM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pensim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: snowfall
Loading required package: snow
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘survival’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Paper_Analysis.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘peptider’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Peptides’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘perARMA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘perccalc-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: perc_diff
> ### Title: Calculate percentile differences from an ordered categorical
> ###   variable and a continuous variable.
> ### Aliases: perc_diff
> 
> ### ** Examples
> 
> 
> library(dplyr)
Error: package or namespace load failed for ‘dplyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘perc_calculator_example.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘perccal’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘Perc.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘peRiodiCS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘permDep’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: R2HTML
Loading required package: xtable
Error: package or namespace load failed for ‘permPATH’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/permPATH/libs/permPATH.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/permPATH/libs/permPATH.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘permubiome’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘permuco’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘permutations’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gmp/libs/gmp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gmp/libs/gmp.so: failed to map segment from shared object
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > ## Test `permute` using the `testthat` package
  > 
  > ## Setup
  > library("testthat")
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PerseusR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Biobase/libs/Biobase.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Biobase/libs/Biobase.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: grImport
Loading required package: grid
Loading required package: XML
Error: package or namespace load failed for ‘XML’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Error: package ‘XML’ could not be loaded
Execution halted
Running examples in ‘perturb-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: perturb
> ### Title: Perturbation analysis to evaluate collinearity
> ### Aliases: perturb summary.perturb print.summary.perturb
> ### Keywords: regression
> 
> ### ** Examples
> 
> library(car)
Loading required package: carData
Error: package or namespace load failed for ‘car’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘perturbR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘PetfindeR_Introduction_Part_One.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: adimpro
Loading required package: awsMethods
Error: package or namespace load failed for ‘awsMethods’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/awsMethods/libs/awsMethods.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/awsMethods/libs/awsMethods.so: failed to map segment from shared object
Error: package ‘awsMethods’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘petrinetR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pewdata’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pgam’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pgam/libs/pgam.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pgam/libs/pgam.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pgbart’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnet/libs/nnet.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnet/libs/nnet.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pgdraw’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pgee.mixed’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pgirmess’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: JGL
Loading required package: igraph
Error: package or namespace load failed for ‘igraph’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Error: package ‘igraph’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pgmm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pgmm/libs/pgmm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pgmm/libs/pgmm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pGPx’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pbivnorm/libs/pbivnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pbivnorm/libs/pbivnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pgraph’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SAM/libs/SAM.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SAM/libs/SAM.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  fdouble_metaphone.c:268:5: warning: ‘strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/PGRdup.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PGRdup’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ph2bayes’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: animation
Loading required package: nleqslv
Error: package or namespace load failed for ‘nleqslv’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nleqslv/libs/nleqslv.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nleqslv/libs/nleqslv.so: failed to map segment from shared object
Error: package ‘nleqslv’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ph2mult’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘phantom’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Phase123’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘phaseR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/deSolve/libs/deSolve.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/deSolve/libs/deSolve.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pheatmap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PHEindicatormethods’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘phenex’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/DEoptim/libs/DEoptim.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/DEoptim/libs/DEoptim.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PHENIX’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running ‘run_tests.r’ [0s/0s]
Running the tests in ‘tests/run_tests.r’ failed.
Complete output:
  > # Run all unit tests
  > 
  > # This is a wrapper around all the tests specified
  > # in the tests/testthat directory. These tests are visible
  > # to users and serve as small examples as well.
  > testthat::test_check("phenocamr")
  Error in dyn.load(file, DLLpath = DLLpath, ...) : 
    unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Calls: :: ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘phenocamr-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘phenoCDM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: numDeriv
Loading required package: parallel
Loading required package: optimx
Loading required package: lmf
Loading required package: HelpersMG
Loading required package: coda
Error: package or namespace load failed for ‘coda’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘coda’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘phenomap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘phenopix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PhenotypeSimulator’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘philentropy’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘phonenumber.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘phonics’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘phonR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Repulsive force
> ### Title: Repulsive force calculations and plots for vowel systems.
> ### Aliases: repulsiveForce repulsiveForceHeatmap
> ###   repulsiveForceHeatmapLegend
> ### Keywords: methods
> 
> ### ** Examples
> 
>     require(plotrix)
Loading required package: plotrix
>     data(indoVowels)
>     force <- with(indo[indo$subj==indo$subj[1],], 
+                   repulsiveForce(f2, f1, vowel))
>     colmap <- color.scale(x=0:100, cs1=c(0, 180), cs2=100, 
+                           cs3=c(25, 100), color.spec='hcl')
>     with(indo[indo$subj==indo$subj[1],],
+         repulsiveForceHeatmap(f2, f1, type=vowel, resolution=10,
+                               colormap=colmap, add=FALSE))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Calls: with ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: photobiology
Error: package or namespace load failed for ‘photobiology’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Error: package ‘photobiology’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘photobiologyInOut’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘photobiology’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Running examples in ‘phrasemachine-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: phrasemachine
> ### Title: POS tag and extract phrases from a collection of documents
> ### Aliases: phrasemachine
> 
> ### ** Examples
> 
> phrasemachine("Hello there my red good cat.")
Currently tagging document 1 of 1 
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Calls: phrasemachine ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘getting_started_with_phrasemachine.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘phreeqc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/phreeqc/libs/phreeqc.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/phreeqc/libs/phreeqc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘phtt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pspline/libs/pspline.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pspline/libs/pspline.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘phuse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: LBE
Loading required package: MCMCpack
Loading required package: coda
Error: package or namespace load failed for ‘coda’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘coda’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Phxnlme’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: phangorn
Loading required package: ape
Error: package or namespace load failed for ‘ape’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘ape’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘phyext2’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PhyInformR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘phylin-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: extract.val
> ### Title: Extact pairwise values from a matrix in a specified order.
> ### Aliases: extract.val
> ### Keywords: variogram kriging
> 
> ### ** Examples
> 
> 
> data(vipers)
> data(d.gen)
> 
> # calculate midpoints
> mp <- midpoints(vipers[,1:2])
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/geometry/libs/geometry.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/geometry/libs/geometry.so: failed to map segment from shared object
Calls: midpoints ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...

Error: processing vignette ‘phylin_tutorial.Snw’ failed with diagnostics:
 chunk 29 (label = midpoints) 
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/geometry/libs/geometry.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/geometry/libs/geometry.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘phylobase’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘phylocanvas’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘phylocomr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: executables
> ### Title: Executables
> ### Aliases: executables ecovolve phylocom phylomatic
> 
> ### ** Examples
> 
> ecovolve()
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/sys/libs/sys.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/sys/libs/sys.so: failed to map segment from shared object
Calls: ecovolve ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘phylocomr_vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘phylocurve’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘phylogram’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘phyloland’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PhyloMeasures’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘phylopath-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: DAG
> ### Title: Directed acyclic graphs (DAGs)
> ### Aliases: DAG
> 
> ### ** Examples
> 
>   # Use formula notation to create DAGs:
>   plot(DAG(A~B, B~C))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Calls: plot ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘binary_models.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘phylosignal’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: R.oo
Loading required package: R.methodsS3
R.methodsS3 v1.7.1 (2016-02-15) successfully loaded. See ?R.methodsS3 for help.
R.oo v1.22.0 (2018-04-21) successfully loaded. See ?R.oo for help.

Attaching package: ‘R.oo’

The following objects are masked from ‘package:methods’:

    getClasses, getMethods

The following objects are masked from ‘package:base’:

    attach, detach, gc, load, save

Loading required package: ape
Error: package or namespace load failed for ‘ape’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘ape’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘phylotaR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/treeman/libs/treeman.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/treeman/libs/treeman.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘physiology’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PhySortR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: insol
Error: package or namespace load failed for ‘insol’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/insol/libs/insol.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/insol/libs/insol.so: failed to map segment from shared object
Error: package ‘insol’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pid’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PieceExpIntensity’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘piecewiseSEM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pifpaf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: snowfall
Loading required package: snow
Loading required package: ARTP
Error: package or namespace load failed for ‘ARTP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ARTP/libs/ARTP.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ARTP/libs/ARTP.so: failed to map segment from shared object
Error: package ‘ARTP’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘piggyback’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PIGShift’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Pijavski’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pillar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pimeta’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pinbasic’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pingers’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pingr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pingr/libs/pingr.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pingr/libs/pingr.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pinnacle.API’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pinp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pinyin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pipe.design’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pipefittr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pirate’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘piton’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: bayesmix
Error: package or namespace load failed for ‘bayesmix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘bayesmix’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pivotaltrackR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pivot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pivottabler’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pixels’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pixiedust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pkgbuild’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/processx/libs/processx.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/processx/libs/processx.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pkgcopier’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pkgdown’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ggnetwork
Loading required package: ggplot2
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘ggplot2’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pkgload’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: registry
Error: package or namespace load failed for ‘pkgmaker’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pkgnet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Depends: includes the non-default packages:
  ‘RGtk2’ ‘gWidgetsRGtk2’ ‘cairoDevice’ ‘lattice’ ‘rggobi’ ‘ggplot2’
  ‘proto’
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pkgsearch’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Running examples in ‘PkgsFromFiles-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pff_check_install_pkgs
> ### Title: Checks and installs a single package
> ### Aliases: pff_check_install_pkgs
> 
> ### ** Examples
> 
> pff_check_install_pkgs('dplyr')

Installing dplyr	Already installedError in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: pff_check_install_pkgs ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘pff_vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PKNCA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PKPDmisc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...

Error: processing vignette ‘UsersGuide.Rnw’ failed with diagnostics:
 chunk 1 (label = preliminaries) 
Error : package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pksensi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: sets
Error: package or namespace load failed for ‘sets’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/sets/libs/sets.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/sets/libs/sets.so: failed to map segment from shared object
Error: package ‘sets’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘placement’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PlackettLuce’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: dielectric
Error: package or namespace load failed for ‘planar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘planor’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘plan.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Introduction_to_fitaci.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Plasmidprofiler’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Plasmode’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘plater-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: read_plates
> ### Title: Read multiple plater-formatted files and combine result into one
> ###   data frame.
> ### Aliases: read_plates
> 
> ### ** Examples
> 
> # Combine multiple files into one tidy data frame
> file1 <- system.file("extdata", "example-1.csv", package = "plater")
> file2 <- system.file("extdata", "more-bacteria.csv", package = "plater")
> 
> # Data are stored in plate-shaped form
> data <- read_plates(
+    files = c(file1, file2),
+    plate_names = c("Experiment 1", "Experiment 2"),
+    well_ids_column = "Wells")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: read_plates ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘plater-basics.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘platetools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PlayerRatings’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PlayerRatings/libs/PlayerRatings.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PlayerRatings/libs/PlayerRatings.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘pleiades_vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘plfMA’:
 .onLoad failed in loadNamespace() for ‘limma’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/limma/libs/limma.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/limma/libs/limma.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: sfsmisc
Loading required package: abind
Error: package or namespace load failed for ‘plfm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/plfm/libs/plfm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/plfm/libs/plfm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘plinkQC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PLmixed’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PLMIX’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Formula
Error: package or namespace load failed for ‘plm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pln’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pln/libs/pln.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pln/libs/pln.so: failed to map segment from shared object
Execution halted
Running examples in ‘plogr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plogr-package
> ### Title: plogr: The 'plog' C++ Logging Library
> ### Aliases: plogr plogr-package
> 
> ### ** Examples
> 
> plogr_demo <- Rcpp::cppFunction(depends = "plogr", '
+ // C++ code begin
+ #include <plogr.h>
+ 
+ RObject plogr_demo() {
+   plog::init_r(plog::info);
+   LOG_INFO << "shown";
+   LOG_DEBUG << "not shown";
+   plog::init_r("DEBUG");
+   LOG_DEBUG << "shown now";
+   return R_NilValue;
+ }
+ 
+ #include <Rcpp.h> // not necessary to use plogr
+ // C++ code end
+ '
+ )
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: :: ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘plotfunctions.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘plotKML’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘plotluck’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘plotMCMC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘plotMElm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running ‘test.plotmo.R’ [0s/0s]
Running the tests in ‘tests/test.plotmo.R’ failed.
Complete output:
  > # test.plotmo.R
  > # This does a basic sanity test of plotmo.
  > # For more comprehensive tests, see plotmo/inst/slowtests.
  > library(plotmo)
  Loading required package: plotrix
  Loading required package: TeachingDemos
  > library(rpart)
  Error: package or namespace load failed for 'rpart' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rpart/libs/rpart.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rpart/libs/rpart.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PlotPrjNetworks’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘plotrr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bivarplots
> ### Title: Plots the bivariate relationship between two measures for each
> ###   group/unit
> ### Aliases: bivarplots
> 
> ### ** Examples
> 
> a <- runif(1000, min = 0, max = 1)
> b <- a + rnorm(1000, mean = 0, sd = 1)
> c <- rep(c(1:10), times = 100)
> data <- data.frame(a, b, c)
> bivarplots("a", "b", "c", data)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: bivarplots ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘plotrr-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘plotscale.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘PLSbiplot1-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Mag.Bmat.plot
> ### Title: Magnitude of the Partial Least Squares Regression (PLSR)
> ###   coefficients matrix
> ### Aliases: Mag.Bmat.plot
> 
> ### ** Examples
> 
> if(require(pls))
+ data(oliveoil, package="pls")
Loading required package: pls

Attaching package: ‘pls’

The following object is masked from ‘package:stats’:

    loadings

> X = as.matrix(oliveoil$chemical, ncol=5)
> dimnames(X) = list(paste(c("G1","G2","G3","G4","G5","I1","I2","I3","I4","I5",
+ "S1","S2","S3","S4","S5","S6")),
+ paste(c("Acidity","Peroxide","K232","K270","DK")))
> Y = as.matrix(oliveoil$sensory, ncol=6)
> dimnames(Y) = list(paste(c("G1","G2","G3","G4","G5","I1","I2","I3","I4","I5",
+ "S1","S2","S3","S4","S5","S6")),
+ paste(c("Yellow","Green","Brown","Glossy","Transp","Syrup")))
> Mag.Bmat.plot(X, Y, algorithm=mod.SIMPLS, A=2)
> 
> #nutrimouse data
> if(require(mixOmics))
+ data(nutrimouse, package="mixOmics")
Loading required package: mixOmics
Loading required package: MASS
Loading required package: lattice
Loading required package: ggplot2
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Failed with error:  ‘package ‘ggplot2’ could not be loaded’
> X1 = as.matrix(nutrimouse$lipid, ncol=21)
Error in as.matrix(nutrimouse$lipid, ncol = 21) : 
  object 'nutrimouse' not found
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘plsgenomics’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dotCall64/libs/dotCall64.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dotCall64/libs/dotCall64.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘plspm.formula’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/amap/libs/amap.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/amap/libs/amap.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘plspm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/amap/libs/amap.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/amap/libs/amap.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘plspolychaos’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘plsRbeta’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Running examples in ‘pls-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cppls.fit
> ### Title: CPPLS (Indahl et al.)
> ### Aliases: cppls.fit
> ### Keywords: regression classification multivariate
> 
> ### ** Examples
> 
> data(mayonnaise)
> # Create dummy response
> mayonnaise$dummy <-
+     I(model.matrix(~y-1, data.frame(y = factor(mayonnaise$oil.type))))
> 
> # Predict CPLS scores for test data
> may.cpls <- cppls(dummy ~ NIR, 10, data = mayonnaise, subset = train)
> may.test <- predict(may.cpls, newdata = mayonnaise[!mayonnaise$train,], type = "score")
> 
> # Predict CPLS scores for test data (experimental used design as additional Y information)
> may.cpls.yadd <- cppls(dummy ~ NIR, 10, data = mayonnaise, subset = train, Y.add=design)
> may.test.yadd <- predict(may.cpls.yadd, newdata = mayonnaise[!mayonnaise$train,], type = "score")
> 
> # Classification by linear discriminant analysis (LDA)
> library(MASS)
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running ‘test_import.R’ [0s/0s]
  Running ‘test_library.R’ [6s/8s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘plsRcox’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘plsRglm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: pls

Attaching package: ‘pls’

The following object is masked from ‘package:stats’:

    loadings

Error: package or namespace load failed for ‘plsVarSel’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bdsmatrix/libs/bdsmatrix.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bdsmatrix/libs/bdsmatrix.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pltesim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘plugdensity’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/plugdensity/libs/plugdensity.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/plugdensity/libs/plugdensity.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘plumber’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Running examples in ‘pluscode-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pluscode_encode
> ### Title: Pluscode Encoder
> ### Aliases: pluscode_encode
> 
> ### ** Examples
> 
> pluscode_encode(52.501450, -6.567180, 8)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Calls: pluscode_encode ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘plusser’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘plyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘pmatch-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: case_func
> ### Title: Creates a pattern matching function.
> ### Aliases: case_func
> 
> ### ** Examples
> 
> linked_list := NIL | CONS(car, cdr : linked_list)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: := ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘getting-started-with-pmatch-.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pmcgd’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mixture/libs/mixture.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mixture/libs/mixture.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PMCMRplus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gmp/libs/gmp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gmp/libs/gmp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pmc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘globalstd.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pmhtutorial’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: DiagrammeR
Error: package or namespace load failed for ‘DiagrammeR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘DiagrammeR’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PMmisc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘pmmlTransformations-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: FunctionXform
> ### Title: Add a function transformation to a WrapData object.
> ### Aliases: FunctionXform
> 
> ### ** Examples
> 
> # Load the standard iris dataset
> data(iris)
> 
> # Wrap the data
> irisBox <- WrapData(iris)
> 
> # Perform a transform on the Sepal.Length field: 
> # the value is squared and then divided by 100
> irisBox <- FunctionXform(irisBox,origFieldName="Sepal.Length",
+                          newFieldName="Sepal.Length.Transformed",
+                          formulaText="(Sepal.Length^2)/100")
> 
> # Combine two fields to create another new feature:                      
> irisBox <- FunctionXform(irisBox,
+                          origFieldName="Sepal.Width, Petal.Width",
+                          newFieldName="Width.Sum",
+                          formulaText="Sepal.Width + Sepal.Length")
>                          
> # Create linear model using the derived features
> fit <- lm(Petal.Length ~ 
+          Sepal.Length.Transformed + Width.Sum, data=irisBox$data)
> 
> # Create pmml from the fit
> library(pmml)
Loading required package: XML
Error: package or namespace load failed for ‘XML’:
 .onLoad failed in loadNamespace() for 'XML', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Error: package ‘XML’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘FunctionXform.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pmpp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘pmultinom-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: invert.pmultinom
> ### Title: Calculate the sample size such that the probability of a result
> ###   is a given amount.
> ### Aliases: invert.pmultinom
> 
> ### ** Examples
> 
> # How many cells must be sequenced to have a 95% chance of
> # observing at least 2 from each subclone of a tumor? (Data
> # from Casasent et al (2018); see vignette("pmultinom") for
> # details of this example)
> 
> # Input: 
> ncells <- 204
> subclone.freqs <- c(43, 20, 82, 17, 5, 37)/ncells
> target.number <- c(2, 2, 2, 2, 2, 0)
> lower.bound <- target.number - 1
> invert.pmultinom(lower=lower.bound, probs=subclone.freqs,
+                  target.prob=.95, method="exact")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/fftw/libs/fftw.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/fftw/libs/fftw.so: failed to map segment from shared object
Calls: invert.pmultinom ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...

Error: processing vignette ‘pmultinom.Rnw’ failed with diagnostics:
 chunk 4 
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/fftw/libs/fftw.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/fftw/libs/fftw.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PMwR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pmxTools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PNADcIBGE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘png’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/png/libs/png.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/png/libs/png.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘POCRE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: dfcrm
Loading required package: nnet
Error: package or namespace load failed for ‘nnet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnet/libs/nnet.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nnet/libs/nnet.so: failed to map segment from shared object
Error: package ‘nnet’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘poibin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/poibin/libs/poibin.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/poibin/libs/poibin.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘poilog’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/poilog/libs/poilog.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/poilog/libs/poilog.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pointblank’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RMySQL/libs/RMySQL.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RMySQL/libs/RMySQL.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pointdensityP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘poio’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘poisbinom’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: corpcor
Loading required package: GenOrd
Loading required package: mvtnorm
Error: package or namespace load failed for ‘mvtnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘mvtnorm’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘poisDoubleSamp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘poisFErobust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘polidata’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘poliscidata’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘politeness’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pollen’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: brms
Loading required package: Rcpp
Error: package or namespace load failed for ‘Rcpp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘Rcpp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pollstR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘polmineR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PoloniexR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RApiDatetime/libs/RApiDatetime.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RApiDatetime/libs/RApiDatetime.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘polspline’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/polspline/libs/polspline.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/polspline/libs/polspline.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘polychaosbasics’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Polychrome’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/colorspace/libs/colorspace.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/colorspace/libs/colorspace.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘polyclip’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/polyclip/libs/polyclip.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/polyclip/libs/polyclip.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘polyCub’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘polyfreqs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘polyglot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘polylabelr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘polymapR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bridgeHomologues
> ### Title: Use bridge markers to cluster homologues into linkage groups
> ### Aliases: bridgeHomologues assembleDuplexLinks
> 
> ### ** Examples
> 
> data("P1_homologues", "P2_homologues", "SN_DN_P1", "SN_SS_P1", "SN_SS_P2")
> ChHomDf<-bridgeHomologues(cluster_stack = P1_homologues[["5"]],
+                  linkage_df=SN_DN_P1,
+                  LOD_threshold=4,
+                  automatic_clustering=TRUE,
+                  LG_number=5,
+                  parentname="P1")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Calls: bridgeHomologues ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Vignette_polymapR.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PolynomF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PolynomF/libs/PolynomF.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PolynomF/libs/PolynomF.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PolyPatEx’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Running examples in ‘polypoly-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: poly_add_columns
> ### Title: Add orthogonal polynomial columns to a dataframe
> ### Aliases: poly_add_columns
> 
> ### ** Examples
> 
> df <- data.frame(time = rep(1:5, 3), y = rnorm(15))
> 
> # adds columns "time1", "time2", "time3"
> poly_add_columns(df, time, degree = 3)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: poly_add_columns ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘polyRAD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/fastmatch/libs/fastmatch.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/fastmatch/libs/fastmatch.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘polysat’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: polySegratio
Error: package or namespace load failed for ‘polySegratio’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Error: package ‘polySegratio’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘polySegratio’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: miscTools
Error: package or namespace load failed for ‘polywog’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pompom’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pomp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pooh’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pooh/libs/pooh.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pooh/libs/pooh.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pooling’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pool’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: EmpiricalBrownsMethod
Loading required package: Hmisc
Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lattice’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘popdemog_tutorial.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘popdemo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PopED’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘popEpi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: knitr
Loading required package: adegenet
Loading required package: ade4
Error: package or namespace load failed for ‘ade4’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘ade4’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘popkin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: poppr
Loading required package: adegenet
Loading required package: ade4
Error: package or namespace load failed for ‘ade4’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘ade4’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pop’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘popsom’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/som/libs/som.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/som/libs/som.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘poptrend’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘populationPDXdesign’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Loading required package: abind
Error: package or namespace load failed for ‘population’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/population/libs/population.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/population/libs/population.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PopVar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/truncnorm/libs/truncnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/truncnorm/libs/truncnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Loading required package: abind
Error: package or namespace load failed for ‘pop.wolf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pop.wolf/libs/pop.wolf.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pop.wolf/libs/pop.wolf.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘portalr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: PortfolioEffectHFT
Loading required package: ggplot2
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘ggplot2’ could not be loaded
Execution halted
Running examples in ‘PortfolioOptim-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: BDportfolio_optim
> ### Title: Portfolio Optimization by Benders decomposition
> ### Aliases: BDportfolio_optim
> 
> ### ** Examples
> 
>  
> library(Rglpk) 
Loading required package: slam
Error: package or namespace load failed for ‘slam’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/slam/libs/slam.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/slam/libs/slam.so: failed to map segment from shared object
Error: package ‘slam’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PortRisk’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘getting-zoned.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘POT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/POT/libs/POT.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/POT/libs/POT.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘potts’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/potts/libs/potts.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/potts/libs/potts.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PottsUtils’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘powdist’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘powdR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bkg
> ### Title: Fit a background to XRPD data
> ### Aliases: bkg
> 
> ### ** Examples
> 
> data(soils)
> fit_bkg <- bkg(soils$granite)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SparseM/libs/SparseM.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SparseM/libs/SparseM.so: failed to map segment from shared object
Calls: bkg ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘powdR_vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘powell’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/powell/libs/powell.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/powell/libs/powell.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Power2Stage’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Running ‘test_all.R’ [0s/0s]
Running the tests in ‘tests/test_all.R’ failed.
Complete output:
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘poweRlaw’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/VGAM/libs/VGAM.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/VGAM/libs/VGAM.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘powerlmm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘powerplus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Loading required package: Rcpp
Error: package or namespace load failed for ‘Rcpp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘Rcpp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘powerSurvEpi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PowerTOST’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘three_level_cluster_randomized_trial.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PP3’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PP3/libs/PP3.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PP3/libs/PP3.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ppcc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ppcc/libs/ppcc.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ppcc/libs/ppcc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ppclust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lhs/libs/lhs.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lhs/libs/lhs.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ppcSpatial’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PPforest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ppgmmga’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ppitables’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: splines
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PPQplan’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ppsbm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PPtree’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/flsa/libs/flsa.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/flsa/libs/flsa.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pqantimalarials’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PQLseq’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘PracTools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: deff
> ### Title: Design effects of various types
> ### Aliases: deff
> ### Keywords: methods survey
> 
> ### ** Examples
> 
> require(reshape)      # has function that allows renaming variables
Loading required package: reshape
Error: package or namespace load failed for ‘reshape’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
> require(sampling)
Loading required package: sampling
Error: package or namespace load failed for ‘sampling’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
> 
> set.seed(-500398777)
>     # generate population using HMT function
> pop.dat <- as.data.frame(HMT())
> mos <- pop.dat$x
> pop.dat$prbs.1d <- mos / sum(mos)
>     # select pps sample
> n <- 80
> pk <- n * pop.dat$prbs.1d
> sam <- UPrandomsystematic(pk)
Error in UPrandomsystematic(pk) : 
  could not find function "UPrandomsystematic"
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘praznik’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/praznik/libs/praznik.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/praznik/libs/praznik.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘prcbench’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘prclust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘prcr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: create_profiles
> ### Title: Create profiles of observed variables using two-step cluster
> ###   analysis
> ### Aliases: create_profiles
> 
> ### ** Examples
> 
> create_profiles(mtcars, disp, hp, wt, n_profiles = 2, to_scale = TRUE)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: create_profiles ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘introduction_to_prcr.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PreciseSums’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PreciseSums/libs/PreciseSums.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/PreciseSums/libs/PreciseSums.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘precrec’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘predictionInterval’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘prediction’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PredictionR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘predkmeans’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PredPsych’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘predtoolsTS-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: modl
> ### Title: Building predictive models
> ### Aliases: modl
> 
> ### ** Examples
> 
> p <- prep(AirPassengers)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: prep ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘preference’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘prefeR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mcmc/libs/mcmc.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mcmc/libs/mcmc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PreKnitPostHTMLRender’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PReMiuM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘prepdat’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘prepplotOverview.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘preprocomb’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘preprosim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘preproviz’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pre’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running ‘test_prereg.R’ [0s/0s]
Running the tests in ‘tests/test_prereg.R’ failed.
Complete output:
  > require("testthat")
  Loading required package: testthat
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  > test_check("prereg")
  Error in test_check("prereg") : could not find function "test_check"
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘presens’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PResiduals’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘preText’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘prettydoc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘prettymapr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mergebbox
> ### Title: Combine bounding boxes
> ### Aliases: mergebbox
> 
> ### ** Examples
> 
> box1 <- searchbbox("wolfville, ns")
Using default API key for pickpoint.io. If batch geocoding, please get your own (free) API key at https://app.pickpoint.io/sign-up
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: searchbbox ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Running ‘test-all.R’ [0s/0s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > 
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pRF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘interpolation-in-small-samples.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: directlabels
Error: package or namespace load failed for ‘directlabels’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Error: package ‘directlabels’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘primes’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  zhegv.c:216:27: warning: ‘strncpy’ specified bound 2 equals destination size [-Wstringop-truncation]
  zhegv.c:216:27: warning: ‘strncpy’ specified bound 3 equals destination size [-Wstringop-truncation]
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/PRIMME.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PRIMME’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘prim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘princurve’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘printr.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘prioritylasso’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘PRISMAstatement-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: prisma
> ### Title: Generate a PRISMA statement flow chart
> ### Aliases: prisma
> 
> ### ** Examples
> 
> prisma(1000, 20, 270, 270, 10, 260, 20, 240, 107)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Calls: prisma ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘PRISMA.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PRISM.forecast’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘prism’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘prisonbrief’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: boot
Loading required package: stats4
Loading required package: lme4
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: combinat

Attaching package: ‘combinat’

The following object is masked from ‘package:utils’:

    combn

Loading required package: fAsianOptions
Loading required package: timeDate
Loading required package: timeSeries
Loading required package: fBasics
Error: package or namespace load failed for ‘fBasics’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/spatial/libs/spatial.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/spatial/libs/spatial.so: failed to map segment from shared object
Error: package ‘fBasics’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘processanimateR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘processcheckR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Running examples in ‘processcontrol-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: six_sigma_ctrl_chart
> ### Title: Generate IndX and mR charts.
> ### Aliases: six_sigma_ctrl_chart
> 
> ### ** Examples
> 
> data("spcTimeSeries")
> six_sigma_ctrl_chart(spcTimeSeries)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: six_sigma_ctrl_chart ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘processmapR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘processmonitR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘processx’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/processx/libs/processx.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/processx/libs/processx.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pROC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘prodigenr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘prodlim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘productivity’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpSolveAPI/libs/lpSolveAPI.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/lpSolveAPI/libs/lpSolveAPI.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘productplots’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘profdpm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/profdpm/libs/profdpm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/profdpm/libs/profdpm.so: failed to map segment from shared object
Execution halted
Running examples in ‘profileModel-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: profileModel
> ### Title: Get the profiles of arbitrary objectives for arbitrary
> ###   'glm'-like models
> ### Aliases: profileModel prelim.profiling profiling
> ### Keywords: models
> 
> ### ** Examples
> 
> ## Begin Example 1
> library(MASS)
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘profile’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: FITSio
Loading required package: magicaxis
Error: package or namespace load failed for ‘magicaxis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘magicaxis’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘profr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘proftools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: filterProfileData
> ### Title: Filter Profile Data
> ### Aliases: filterProfileData
> ### Keywords: programming utilities
> 
> ### ** Examples
> 
> pd <- readProfileData(system.file("samples", "glmEx.out", package="proftools"))
> plotProfileCallGraph(pd)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/graph/libs/BioC_graph.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/graph/libs/BioC_graph.so: failed to map segment from shared object
Calls: plotProfileCallGraph ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘proftools.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘prof.tree’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘profvis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘progress’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘proj4’:
 .onLoad failed in loadNamespace() for ‘proj4’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/proj4/libs/proj4.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/proj4/libs/proj4.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ProjectionBasedClustering’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘projections-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cumulate.projections
> ### Title: Compute cumulative projections
> ### Aliases: cumulate.projections
> 
> ### ** Examples
> 
> 
> if (require(distcrete) &&
+     require(incidence)) {
+ 
+   ## simulate basic epicurve
+   dat <- c(0, 2, 2, 3, 3, 5, 5, 5, 6, 6, 6, 6)
+   i <- incidence(dat)
+ 
+ 
+   ## example with a function for SI
+   si <- distcrete("gamma", interval = 1L,
+                   shape = 1.5,
+                   scale = 2, w = 0)
+   set.seed(1)
+   pred_1 <- project(i, runif(100, 0.8, 1.9), si, n_days = 30)
+   plot_1 <- plot(pred_1)
+ 
+   ## cumulative predictions
+   pred_1_cum <- cumulate(pred_1)
+   pred_1_cum
+   plot(pred_1_cum)
+ }
Loading required package: distcrete
Loading required package: incidence
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: plot ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: triangle
Loading required package: plotly
Loading required package: ggplot2
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘ggplot2’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘projector’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘projmanr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘projpred’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘ProliferativeIndexVignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘promises’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: fastcluster
Error: package or namespace load failed for ‘fastcluster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/fastcluster/libs/fastcluster.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/fastcluster/libs/fastcluster.so: failed to map segment from shared object
Error: package ‘fastcluster’ could not be loaded
Execution halted
Running examples in ‘proportion-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: PlotciAAS
> ### Title: Plot of CI estimation of adjusted ArcSine
> ### Aliases: PlotciAAS
> 
> ### ** Examples
> 
> n=5; alp=0.05;h=2
> PlotciAAS(n,alp,h)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: PlotciAAS ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘propr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘proPubBills’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PROreg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘instrument-descriptions.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Intro_to_PROscorerTools.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: RcppArmadillo
Error: package or namespace load failed for ‘RcppArmadillo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘RcppArmadillo’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘proteomics’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘protiq’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘protoclust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/protoclust/libs/protoclust.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/protoclust/libs/protoclust.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘protolite’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘proton’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: intervals
Error: package or namespace load failed for ‘intervals’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/intervals/libs/intervals.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/intervals/libs/intervals.so: failed to map segment from shared object
Error: package ‘intervals’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: audio
Error: package or namespace load failed for ‘audio’:
 .onLoad failed in loadNamespace() for ‘audio’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/audio/libs/audio.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/audio/libs/audio.so: failed to map segment from shared object
Error: package ‘audio’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘protr.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘protViz’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘proustr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SnowballC/libs/SnowballC.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SnowballC/libs/SnowballC.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘provenance’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘proxy’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/proxy/libs/proxy.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/proxy/libs/proxy.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘prozor’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘prrd’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running ‘all_tests.R’ [0s/0s]
Running the tests in ‘tests/all_tests.R’ failed.
Complete output:
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...

Error: processing vignette ‘PRROC.Rnw’ failed with diagnostics:
 chunk 47 
Error : package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pRSR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pRSR/libs/pRSR.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pRSR/libs/pRSR.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pryr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: PogromcyDanych
Loading required package: dplyr
Error: package or namespace load failed for ‘dplyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Error: package ‘dplyr’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: LearnBayes
Loading required package: SuppDists
Error: package or namespace load failed for ‘SuppDists’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SuppDists/libs/SuppDists.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SuppDists/libs/SuppDists.so: failed to map segment from shared object
Error: package ‘SuppDists’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘PSCBS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pscl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pscore’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘psda-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pfreq
> ### Title: Polygonal Symbolic Relative Frequency
> ### Aliases: pfreq
> 
> ### ** Examples
> 
> x <- psim(10, 3) #simulate 10 polygons of 3 sides
> frequency <- pfreq(x)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/sp/libs/sp.so':
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/sp/libs/sp.so: failed to map segment from shared object
Calls: pfreq ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘psData’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘psd’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘pseudorank’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: KMsurv
Loading required package: geepack
Error: package or namespace load failed for ‘geepack’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/geepack/libs/geepack.so’:
  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/geepack/libs/geepack.so: failed to map segment from shared object
Error: package ‘geepack’ could not be loaded
Execution halted
Running ‘simulation-study.R’ [2s/2s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/simulation-study.R’ failed.
Complete output:
  > ## Simulation study demonstrating that estimation methods work, i.e., estimate the parameters correctly
  > ## This takes a while to run
  > expit <- function(x) exp(x)/(1+exp(x))
  > 
  > library(pseval)
  > library(survival)
  Error: package or namespace load failed for 'survival' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/survival/libs/survival.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/survival/libs/survival.so: failed to map segment from shared object
  Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted