loading without being on the library search path
whether the namespace can be loaded with stated dependencies
PDF version of manual without hyperrefs or index

Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘abbyyR’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Malformed Title field: should not end in a period.
Non-standard file/directory found at top level:
  ‘doc’
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Rglpk
Loading required package: slam
Error: package or namespace load failed for ‘slam’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/slam/libs/slam.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/slam/libs/slam.so: failed to map segment from shared object
Error: package ‘slam’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ABCoptim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘ABC.RAP.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: abc.data
Loading required package: nnet
Error: package or namespace load failed for ‘nnet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnet/libs/nnet.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnet/libs/nnet.so: failed to map segment from shared object
Error: package ‘nnet’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘abcrf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: abc
Loading required package: abc.data
Loading required package: nnet
Error: package or namespace load failed for ‘nnet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnet/libs/nnet.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnet/libs/nnet.so: failed to map segment from shared object
Error: package ‘nnet’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: nlme
Error: package or namespace load failed for ‘nlme’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘nlme’ could not be loaded
Execution halted
multiplot: no visible global function definition for ‘rainbow’
multiplot: no visible global function definition for ‘plot’
multiplot: no visible global function definition for ‘text’
multiplot: no visible global function definition for ‘lines’
multiplot: no visible global function definition for ‘par’
plot.abf2: no visible global function definition for ‘plot’
plot.abf2: no visible global function definition for ‘abline’
plot.abf2: no visible global function definition for ‘text’
plot.abf2split: no visible global function definition for ‘plot’
Undefined global functions or variables:
  abline lines par plot rainbow text
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "abline", "lines", "par", "plot", "text")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ABHgenotypeR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘abjutils-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: calc_dig
> ### Title: Calculate digits for Brazilian lawsuit identification numbers
> ### Aliases: calc_dig
> 
> ### ** Examples
> 
> {
+ calc_dig("001040620018260004", build = TRUE)
+ calc_dig("001040620018260004", build = FALSE)
+ 
+ #will fail
+ ## Not run: 
+ ##D calc_dig("00104062001826000", build = TRUE)
+ ## End(Not run)
+ }
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Calls: calc_dig ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Running examples in ‘abnormality-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: generate_correlated_matrix
> ### Title: Generate a matrix of correlated variables
> ### Aliases: generate_correlated_matrix
> 
> ### ** Examples
> 
> Subject <- generate_correlated_matrix(1, 100, corr = .75,constant_cov_matrix = TRUE)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Calls: generate_correlated_matrix ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Package suggested but not available for checking: ‘INLA’
Loading this package had a fatal error status code 1
Loading log:
Loading required package: nnet
Error: package or namespace load failed for ‘nnet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnet/libs/nnet.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnet/libs/nnet.so: failed to map segment from shared object
Error: package ‘nnet’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: cluster
Error: package or namespace load failed for ‘cluster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Error: package ‘cluster’ could not be loaded
Execution halted
Running examples in ‘ABPS-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ABPS
> ### Title: A function for calculating the Abnormal Blood Profile Score
> ### Aliases: ABPS
> 
> ### ** Examples
> 
> ABPS(HCT=43.2, HGB=14.6, MCH=31.1, MCHC=33.8, MCV=92.1, RBC=4.69, RETP=0.48)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/kernlab/libs/kernlab.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/kernlab/libs/kernlab.so: failed to map segment from shared object
Calls: ABPS ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AbsFilterGSEA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Biobase/libs/Biobase.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Biobase/libs/Biobase.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ape
Error: package or namespace load failed for ‘ape’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘ape’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: QUIC
Error: package or namespace load failed for ‘QUIC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/QUIC/libs/QUIC.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/QUIC/libs/QUIC.so: failed to map segment from shared object
Error: package ‘QUIC’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: data.table
Error: package or namespace load failed for ‘data.table’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Error: package ‘data.table’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘accelerometry’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mice
Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lattice’ could not be loaded
Execution halted
Malformed Description field: should contain one or more complete sentences.
fillCSVData: no visible global function definition for ‘read.table’
fillData: no visible global function definition for ‘edit’
plotGraphs: no visible global function definition for ‘par’
plotGraphs: no visible global function definition for ‘plot’
plotGraphs: no visible global function definition for ‘lines’
plotGraphs: no visible global function definition for ‘legend’
plotGraphs: no visible global function definition for ‘dev.new’
Undefined global functions or variables:
  dev.new edit legend lines par plot read.table
Consider adding
  importFrom("grDevices", "dev.new")
  importFrom("graphics", "legend", "lines", "par", "plot")
  importFrom("utils", "edit", "read.table")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mhsmm
Loading required package: mvtnorm
Error: package or namespace load failed for ‘mvtnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘mvtnorm’ could not be loaded
Execution halted
Package has no Sweave vignette sources and no VignetteBuilder field.
Running examples in ‘accSDA-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ASDABarPlot
> ### Title: barplot for ASDA objects
> ### Aliases: ASDABarPlot
> 
> ### ** Examples
> 
>     # Generate and ASDA object with your data, e.g.
>     # Prepare training and test set
>     # This is a very small data set, I advise you to try it on something with more
>     # variables, e.g. something from this source: http://www.cs.ucr.edu/~eamonn/time_series_data/
>     # or possibly run this on the Gaussian data example from the ASDA function
>     train <- c(1:40,51:90,101:140)
>     Xtrain <- iris[train,1:4]
>     nX <- normalize(Xtrain)
>     Xtrain <- nX$Xc
>     Ytrain <- iris[train,5]
>     Xtest <- iris[-train,1:4]
>     Xtest <- normalizetest(Xtest,nX)
>     Ytest <- iris[-train,5]
>     # Run the method
>     resIris <- ASDA(Xtrain,Ytrain)
[1] "Om not specified, using default diag(p)."
[1] "gam not specified, using default value 1e-3"
[1] "lam not specified, using default value 1e-6"
[1] "q not specified, default is the max number K-1, where K is number of classes in Yt"
[1] "method not specified, using default SDAAP. You can choose from: SDAP, SDAAP or SDAD"
> 
>     # Look at the barplots of the DVs
>     ASDABarPlot(resIris)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: ASDABarPlot ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ACDm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
print.funlinWLS: no visible global function definition for ‘pchisq’
print.linML: no visible global function definition for ‘pchisq’
print.loglinML: no visible global function definition for ‘pchisq’
print.satMarML: no visible global function definition for ‘pchisq’
print.satMcarWLS: no visible global function definition for ‘pchisq’
summary.funlinWLS: no visible global function definition for ‘pchisq’
summary.linML: no visible global function definition for ‘pchisq’
summary.loglinML: no visible global function definition for ‘pchisq’
summary.satMarML: no visible global function definition for ‘pchisq’
summary.satMcarWLS: no visible global function definition for ‘pchisq’
summary.waldTest: no visible global function definition for ‘pchisq’
Undefined global functions or variables:
  pchisq
Consider adding
  importFrom("stats", "pchisq")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: lhs
Error: package or namespace load failed for ‘lhs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lhs/libs/lhs.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lhs/libs/lhs.so: failed to map segment from shared object
Error: package ‘lhs’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘acepack’:
 .onLoad failed in loadNamespace() for ‘acepack’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/acepack/libs/acepack.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/acepack/libs/acepack.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ACEt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: gamlss
Loading required package: splines
Loading required package: gamlss.data
Loading required package: gamlss.dist
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: filematrix
Error: package or namespace load failed for ‘ACMEeqtl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ACMEeqtl/libs/ACMEeqtl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ACMEeqtl/libs/ACMEeqtl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘acmeR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/foreign/libs/foreign.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/foreign/libs/foreign.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: aroma.affymetrix
Loading required package: R.utils
Loading required package: R.oo
Loading required package: R.methodsS3
R.methodsS3 v1.7.1 (2016-02-15) successfully loaded. See ?R.methodsS3 for help.
R.oo v1.22.0 (2018-04-21) successfully loaded. See ?R.oo for help.

Attaching package: ‘R.oo’

The following objects are masked from ‘package:methods’:

    getClasses, getMethods

The following objects are masked from ‘package:base’:

    attach, detach, gc, load, save

R.utils v2.7.0 successfully loaded. See ?R.utils for help.

Attaching package: ‘R.utils’

The following object is masked from ‘package:utils’:

    timestamp

The following objects are masked from ‘package:base’:

    cat, commandArgs, getOption, inherits, isOpen, nullfile, parse,
    warnings

Loading required package: aroma.core
Loading required package: R.filesets
Error: package or namespace load failed for ‘R.filesets’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘R.filesets’ could not be loaded
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘acnr.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AcousticNDLCodeR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tseries
Error: package or namespace load failed for ‘tseries’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Error: package ‘tseries’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aCRM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/randomForest/libs/randomForest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/randomForest/libs/randomForest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: treeClust
Loading required package: rpart
Error: package or namespace load failed for ‘rpart’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rpart/libs/rpart.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rpart/libs/rpart.so: failed to map segment from shared object
Error: package ‘rpart’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘acrt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ggplot2
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘ggplot2’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: stringr
Error: package or namespace load failed for ‘stringr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Error: package ‘stringr’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: acss.data
Error: package or namespace load failed for ‘acss’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ACSWR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: R.methodsS3
R.methodsS3 v1.7.1 (2016-02-15) successfully loaded. See ?R.methodsS3 for help.
Error: package or namespace load failed for ‘ACTCD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: fda
Loading required package: splines
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ActisoftR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘activity-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: compareAct
> ### Title: Compare activity level estimates
> ### Aliases: compareAct
> 
> ### ** Examples
> 
> #Test whether paca have a sigificantly different activity level from rat.
> #Bootstrap reps limited to speed up example.
> data(BCItime)
> tPaca <- 2*pi*BCItime$time[BCItime$species=="paca"]
> tRat <- 2*pi*BCItime$time[BCItime$species=="rat"]
> (fPaca <- fitact(tPaca, reps=10))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Calls: fitact ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘activpalProcessing’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/chron/libs/chron.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/chron/libs/chron.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘actogrammr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘actuar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/expint/libs/expint.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/expint/libs/expint.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AcuityView’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/fftwtools/libs/fftwtools.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/fftwtools/libs/fftwtools.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rpart
Error: package or namespace load failed for ‘rpart’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rpart/libs/rpart.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rpart/libs/rpart.so: failed to map segment from shared object
Error: package ‘rpart’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘adagio’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/adagio/libs/adagio.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/adagio/libs/adagio.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘adamethods’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/minpack.lm/libs/minpack.lm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/minpack.lm/libs/minpack.lm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: imputeYn
Loading required package: quadprog
Error: package or namespace load failed for ‘quadprog’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Error: package ‘quadprog’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘ADAPRVignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘adaptalint’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: SemiPar
Error: package or namespace load failed for ‘SemiPar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Error: package ‘SemiPar’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AdaptGauss’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Package required but not available: ‘phyloseq’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AdaptiveSparsity’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘adaptivetau’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/adaptivetau/libs/adaptivetau.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/adaptivetau/libs/adaptivetau.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Loading required package: coda
Error: package or namespace load failed for ‘coda’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘coda’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘adapt_demo.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Depends: includes the non-default packages:
  'Matrix', 'coda', 'mvtnorm', 'MCMCpack', 'spatstat', 'parallel'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lattice’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AdaSampling’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/class/libs/class.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/class/libs/class.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ADCT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘addhazard’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: boot
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘addinslist’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: lpSolveAPI
Error: package or namespace load failed for ‘lpSolveAPI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lpSolveAPI/libs/lpSolveAPI.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lpSolveAPI/libs/lpSolveAPI.so: failed to map segment from shared object
Error: package ‘lpSolveAPI’ could not be loaded
Execution halted
critical.values: no visible global function definition for ‘rnorm’
critical.values: no visible global function definition for ‘quantile’
mandel.test: no visible global function definition for ‘qf’
mtukey.test : p.test: no visible global function definition for ‘qf’
mtukey.test: no visible binding for global variable ‘quantile’
mtukey.test: no visible global function definition for ‘rnorm’
tukey.test: no visible global function definition for ‘qf’
Undefined global functions or variables:
  qf quantile rnorm
Consider adding
  importFrom("stats", "qf", "quantile", "rnorm")
to your NAMESPACE file.
Error in re-building vignettes:
  ...
Error: processing vignette ‘additivityTests-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘addreg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ade4’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ade4
Error: package or namespace load failed for ‘ade4’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘ade4’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘adeba’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘adegraphics’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: sp
Error: package or namespace load failed for ‘sp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘sp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘adepro’:
 .onLoad failed in loadNamespace() for ‘Cairo’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Cairo/libs/Cairo.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Cairo/libs/Cairo.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘adespatial’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘amigaDiskFiles.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AdhereR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: awsMethods
Error: package or namespace load failed for ‘awsMethods’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/awsMethods/libs/awsMethods.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/awsMethods/libs/awsMethods.so: failed to map segment from shared object
Error: package ‘awsMethods’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: quantreg
Loading required package: SparseM
Error: package or namespace load failed for ‘SparseM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseM/libs/SparseM.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseM/libs/SparseM.so: failed to map segment from shared object
Error: package ‘SparseM’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘adjclust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘adjustedcranlogs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘adklakedata’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rappdirs/libs/rappdirs.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rappdirs/libs/rappdirs.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: EbayesThresh
Error: package or namespace load failed for ‘EbayesThresh’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘EbayesThresh’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mvtnorm
Error: package or namespace load failed for ‘mvtnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘mvtnorm’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘admixturegraph.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ADMM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Rcpp
Error: package or namespace load failed for ‘Rcpp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘Rcpp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘adnuts’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/processx/libs/processx.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/processx/libs/processx.so: failed to map segment from shared object
Execution halted
Running examples in ‘ADPclust-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: adpclust
> ### Title: Fast Clustering Using Adaptive Density Peak Detection
> ### Aliases: adpclust
> 
> ### ** Examples
> 
> # Load a data set with 3 clusters
> data(clust3)
> 
> # Automatically select cluster centroids
> ans <- adpclust(clust3, centroids = "auto", draw = FALSE)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Calls: adpclust ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘ADPclust.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘adpss’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ads’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: GenBinomApps
Loading required package: rootSolve
Error: package or namespace load failed for ‘rootSolve’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rootSolve/libs/rootSolve.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rootSolve/libs/rootSolve.so: failed to map segment from shared object
Error: package ‘rootSolve’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘advclust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: waveslim
Error: package or namespace load failed for ‘waveslim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/waveslim/libs/waveslim.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/waveslim/libs/waveslim.so: failed to map segment from shared object
Error: package ‘waveslim’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: car
Loading required package: carData
Error: package or namespace load failed for ‘car’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Error: package ‘car’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rgl
Error: package or namespace load failed for ‘rgl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘rgl’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: lme4
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AFM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘afpt-aerodynamic-model.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘survival’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aftgee’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AGD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘aGE-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: aGE
> ### Title: aGE interaction test
> ### Aliases: aGE
> 
> ### ** Examples
> 
> {
+  set.seed(12345)
+  phenotype <- c(rep(1,50),rep(0,50))
+  genotype <- data.frame(g1=sample(c(rep(1,10),rep(0,90))),g2=sample(c(rep(1,5), rep(0,95))))
+  covariates <- data.frame(Envir=rnorm(100), Age=rnorm(100,60,5))
+  exD <- list(Y=phenotype, G=genotype, X=covariates)
+  aGE(Y=exD$Y, G=exD$G, cov=exD$X, model='binomial', nonparaE=FALSE, stepwise=FALSE)
+  }
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Calls: aGE -> GLMMaSPU
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘About.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AGHmatrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘AGread-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: AGread
> ### Title: Read Data Files from ActiGraph Monitors
> ### Aliases: AGread AGread-package
> 
> ### ** Examples
> 
> read_AG_counts(system.file("extdata", "Example.csv", package = "AGread"), skip = 11)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Calls: read_AG_counts ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: psych
Error: package or namespace load failed for ‘psych’:
 .onLoad failed in loadNamespace() for ‘mnormt’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object
Error: package ‘psych’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: miscF
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘agricolae’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘agridat-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: baker.wheat.uniformity
> ### Title: Uniformity trial of wheat
> ### Aliases: baker.wheat.uniformity
> ### Keywords: datasets
> 
> ### ** Examples
> 
> 
> data(baker.wheat.uniformity)
> dat <- baker.wheat.uniformity
> 
> require(desplot)
Loading required package: desplot
Error: package or namespace load failed for ‘desplot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
> desplot(yield ~ col*row, dat,
+         flip=TRUE, aspect=1,
+         main="baker.wheat.uniformity")
Error in desplot(yield ~ col * row, dat, flip = TRUE, aspect = 1, main = "baker.wheat.uniformity") : 
  could not find function "desplot"
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘agridat_data.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘agriTutorial’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AGSDest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: unmarked
Loading required package: reshape
Error: package or namespace load failed for ‘reshape’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘reshape’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ahnr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AhoCorasickTrie’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ahp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ahpsurvey’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AICcmodavg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aidar’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AID’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AIG’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Running examples in ‘aimPlot-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: aimPlot
> ### Title: Pie Like Plot for Completeness
> ### Aliases: aimPlot
> 
> ### ** Examples
> 
> 
> # basic usage
> library("aimPlot")
> aimPlot(data = RegData, title = "Plot title")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: aimPlot ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Namespace with empty importFrom: ‘survival’
Malformed Description field: should contain one or more complete sentences.
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘survival’
A package should be listed in only one of these fields.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aire.zmvm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘airGR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/airGR/libs/airGR.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/airGR/libs/airGR.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: airGR
Error: package or namespace load failed for ‘airGR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/airGR/libs/airGR.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/airGR/libs/airGR.so: failed to map segment from shared object
Error: package ‘airGR’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘airportr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘airr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aiRthermo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/aiRthermo/libs/aiRthermo.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/aiRthermo/libs/aiRthermo.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ajv’:
 .onLoad failed in loadNamespace() for ‘ajv’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
dke.fun.default: no visible global function definition for ‘hist’
kef: no visible global function definition for ‘dbinom’
kef: no visible global function definition for ‘dgamma’
kef: no visible global function definition for ‘dlnorm’
plot.dke.fun: no visible global function definition for ‘hist’
plot.dke.fun: no visible global function definition for ‘lines’
plot.hcvc.fun1d: no visible global function definition for
  ‘plot.default’
plot.hcvd.fun1d: no visible global function definition for
  ‘plot.default’
plot.kern.fun1d: no visible global function definition for
  ‘plot.default’
plot.kpmfe.fun1d: no visible global function definition for
  ‘plot.default’
plot.reg.fun1d: no visible global function definition for
  ‘plot.default’
simp_int: no visible global function definition for ‘approx’
Undefined global functions or variables:
  approx dbinom dgamma dlnorm hist lines plot.default
Consider adding
  importFrom("graphics", "hist", "lines", "plot.default")
  importFrom("stats", "approx", "dbinom", "dgamma", "dlnorm")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘akima’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
'library' or 'require' call to ‘stats’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
akmeans: no visible global function definition for ‘kmeans’
Undefined global functions or variables:
  kmeans
Consider adding
  importFrom("stats", "kmeans")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ALA4R’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
adpbar: no visible global function definition for ‘optim’
alabama: no visible global function definition for ‘optim’
auglag: no visible global function definition for ‘modifyList’
auglag1: no visible global function definition for ‘optim’
auglag1: no visible global function definition for ‘nlminb’
auglag2: no visible global function definition for ‘optim’
auglag2: no visible global function definition for ‘nlminb’
auglag3: no visible global function definition for ‘optim’
auglag3: no visible global function definition for ‘nlminb’
augpen: no visible global function definition for ‘optim’
constrOptim.nl: no visible global function definition for ‘modifyList’
Undefined global functions or variables:
  modifyList nlminb optim
Consider adding
  importFrom("stats", "nlminb", "optim")
  importFrom("utils", "modifyList")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ALDqr’:
 .onLoad failed in loadNamespace() for ‘mnormt’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object
Execution halted
Running examples in ‘ald-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ALD
> ### Title: The Asymmetric Laplace Distribution
> ### Aliases: ALD dALD pALD qALD rALD
> ### Keywords: asymmetric laplace distribution quantile regression Laplace
> ###   ALD
> 
> ### ** Examples
> 
> ## Let's plot an Asymmetric Laplace Distribution!
> 
> ##Density
> library(ald)
> sseq = seq(-40,80,0.5)
> dens = dALD(y=sseq,mu=50,sigma=3,p=0.75)
> plot(sseq,dens,type = "l",lwd=2,col="red",xlab="x",ylab="f(x)", main="ALD Density function")
> 
> #Look that is an special case of the skewed family in Galarza (2016)
> #with sigma_new = 2*sigma
> require(lqr)
Loading required package: lqr
Error: package or namespace load failed for ‘lqr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/spatstat.utils/libs/spatstat.utils.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/spatstat.utils/libs/spatstat.utils.so: failed to map segment from shared object
> dens2 = dSKD(y = sseq,mu = 50,sigma = 3*2,p = 0.75,dist = "laplace")
Error in dSKD(y = sseq, mu = 50, sigma = 3 * 2, p = 0.75, dist = "laplace") : 
  could not find function "dSKD"
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ALEPlot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/yaImpute/libs/yaImpute.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/yaImpute/libs/yaImpute.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aLFQ’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘alfred’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AlgDesign’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/AlgDesign/libs/AlgDesign.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/AlgDesign/libs/AlgDesign.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘introduction-to-algorithmia.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mpoly
Loading required package: stringr
Error: package or namespace load failed for ‘stringr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Error: package ‘stringr’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘alignfigR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘alineR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/alineR/libs/alineR.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/alineR/libs/alineR.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ALKr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: biglm
Loading required package: DBI
Error: package or namespace load failed for ‘biglm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/biglm/libs/biglm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/biglm/libs/biglm.so: failed to map segment from shared object
Error: package ‘biglm’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: gplots
Error: package or namespace load failed for ‘gplots’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Error: package ‘gplots’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘alleHap.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Found the following apparent S3 methods exported but not registered:
  print.amAlleleFreq print.amDataset summary.amCluster
  summary.amPairwise summary.amUnique
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
amCSV.amCluster: no visible global function definition for ‘write.csv’
amCSV.amPairwise: no visible global function definition for ‘write.csv’
amCSV.amUnique: no visible global function definition for ‘write.csv’
amCluster: no visible global function definition for ‘hclust’
amCluster: no visible global function definition for ‘as.dist’
amHTML.amCluster: no visible global function definition for ‘browseURL’
amHTML.amPairwise: no visible global function definition for
  ‘browseURL’
amHTML.amUnique: no visible global function definition for ‘browseURL’
amUniqueProfile: no visible global function definition for ‘layout’
amUniqueProfile: no visible global function definition for ‘par’
amUniqueProfile: no visible global function definition for
  ‘plot.default’
amUniqueProfile: no visible global function definition for ‘points’
amUniqueProfile: no visible global function definition for ‘lines’
amUniqueProfile: no visible global function definition for ‘arrows’
amUniqueProfile: no visible global function definition for ‘text’
amUniqueProfile: no visible global function definition for ‘legend’
Undefined global functions or variables:
  arrows as.dist browseURL hclust layout legend lines par plot.default
  points text write.csv
Consider adding
  importFrom("graphics", "arrows", "layout", "legend", "lines", "par",
             "plot.default", "points", "text")
  importFrom("stats", "as.dist", "hclust")
  importFrom("utils", "browseURL", "write.csv")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘allelic’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/allelic/libs/allelic.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/allelic/libs/allelic.so: failed to map segment from shared object
Execution halted
batch.possSpells.fnc: no visible binding for global variable ‘words’
possSpells.fnc: no visible binding for global variable ‘len.phons’
possSpells.fnc: no visible binding for global variable ‘phon1’
possSpells.fnc: no visible binding for global variable ‘len.total’
possSpells.fnc: no visible binding for global variable ‘poss.spells’
Undefined global functions or variables:
  len.phons len.total phon1 poss.spells words
Running ‘testall.R’ [0s/0s]
Running the tests in ‘tests/testall.R’ failed.
Complete output:
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘alluvial.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘alpaca’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘alphabetr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘alphahull’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Rsolnp
Error: package or namespace load failed for ‘Rsolnp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/truncnorm/libs/truncnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/truncnorm/libs/truncnorm.so: failed to map segment from shared object
Error: package ‘Rsolnp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: geometry
Loading required package: magic
Loading required package: abind
Error: package or namespace load failed for ‘geometry’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/geometry/libs/geometry.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/geometry/libs/geometry.so: failed to map segment from shared object
Error: package ‘geometry’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: R6
Error: package or namespace load failed for ‘AlphaSimR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘alphastable’:
 .onLoad failed in loadNamespace() for ‘nnls’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnls/libs/nnls.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnls/libs/nnls.so: failed to map segment from shared object
Execution halted
Running examples in ‘AlphaVantageClient-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fetchSeries
> ### Title: Fetch time series data
> ### Aliases: fetchSeries
> 
> ### ** Examples
> 
> setAPIKey()
> example_prices <- fetchSeries(function_nm = "time_series_daily", symbol = "msft")
Warning in checkForRequiredAndOptionalArgs(given_list, function_nm) :
  All optional arguments not met, missing: outputsize, datatype
Error in is.url(url) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Calls: fetchSeries ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘AlphaVantageClient.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘alphavantager’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: leaps
Error: package or namespace load failed for ‘leaps’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/leaps/libs/leaps.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/leaps/libs/leaps.so: failed to map segment from shared object
Error: package ‘leaps’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: nnls
Error: package or namespace load failed for ‘nnls’:
 .onLoad failed in loadNamespace() for ‘nnls’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnls/libs/nnls.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnls/libs/nnls.so: failed to map segment from shared object
Error: package ‘nnls’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘alterryx’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Running examples in ‘ALTopt-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: alteval.ic
> ### Title: Design evaluation with interval censoring.
> ### Aliases: alteval.ic
> 
> ### ** Examples
> 
> # Evaluation of factorial design for interval censoring.
> x1 <- c(0, 1, 0, 1)
> x2 <- c(0, 0, 1, 1)
> allocation <- c(25, 25, 25, 25)
> facDes <- data.frame(x1, x2, allocation)
> 
> alteval.ic(facDes, "D", 30, 5, 2, 1, formula = ~ x1 + x2 + x1:x2,
+ coef = c(0, -4.086, -1.476, 0.01))
[1] 1303.696
> 
> alteval.ic(facDes, "U", 30, 5, 2, 1, formula = ~ x1 + x2 + x1:x2,
+ coef = c(0, -4.086, -1.476, 0.01), useCond = c(1.758, 3.159))
[1] 14.14748
> 
> alteval.ic(facDes, "I", 30, 5, 2, 1, formula = ~ x1 + x2 + x1:x2,
+ coef = c(0, -4.086, -1.476, 0.01), useLower = c(1.458, 2.859), useUpper = c(2.058, 3.459))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: alteval.ic ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘amap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/amap/libs/amap.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/amap/libs/amap.so: failed to map segment from shared object
Execution halted
EXP.step: no visible global function definition for ‘rgamma’
EXP.step: no visible global function definition for ‘rnorm’
MAX.step: no visible global function definition for ‘uniroot’
Norm.GMedian: no visible binding for global variable ‘median’
RNASeq.Data.Gene: no visible binding for global variable ‘quantile’
decom.initial: no visible global function definition for ‘kmeans’
decom.initial: no visible global function definition for ‘quantile’
decom.initial: no visible global function definition for ‘var’
dispersion.nb.QL: no visible binding for global variable ‘quantile’
est.mu.nb.mle: no visible global function definition for ‘runif’
est.v.nb.QL: no visible global function definition for ‘runif’
pdf2grid: no visible global function definition for ‘dnorm’
pdf2grid: no visible global function definition for ‘dgamma’
prior.grid: no visible global function definition for ‘sd’
prior.grid: no visible global function definition for ‘dnorm’
test.AMAP: no visible global function definition for ‘rgamma’
test.AMAP: no visible global function definition for ‘rnorm’
test.AMAP: no visible global function definition for ‘quantile’
Undefined global functions or variables:
  dgamma dnorm kmeans median quantile rgamma rnorm runif sd uniroot var
Consider adding
  importFrom("stats", "dgamma", "dnorm", "kmeans", "median", "quantile",
             "rgamma", "rnorm", "runif", "sd", "uniroot", "var")
to your NAMESPACE file.
Rd file 'MGN.EM.Rd':
  \usage lines wider than 90 characters:
     MGN.EM(data, nK, p0 = NULL, d0 = 0, nK0 = 0, iter.max = 10, print.steps = FALSE, MGN0 = NULL, model = NULL, nMC = 10000)

Rd file 'test.AMAP.Rd':
  \usage lines wider than 90 characters:
     test.AMAP(data, MGN, del.lim = NULL, FC = NULL, print.steps = FALSE, Integration = "MC",nMC=NULL)
  \examples lines wider than 100 characters:
     data("SimuHapMap")  # a matrix 'counts' storing simulated data with 10000 genes, two treatments, of which each has 5 replicates

These lines will be truncated in the PDF manual.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ambhasGW’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ambient’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘AMCTestmaker.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘ameco_dataset.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘amelie-introduction.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AmesHousing’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: zoo
Error: package or namespace load failed for ‘zoo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘zoo’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: adfExplorer
Loading required package: ProTrackR
Loading required package: audio
Error: package or namespace load failed for ‘audio’:
 .onLoad failed in loadNamespace() for ‘audio’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/audio/libs/audio.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/audio/libs/audio.so: failed to map segment from shared object
Error: package ‘audio’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: lars
Error: package or namespace load failed for ‘lars’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lars/libs/lars.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lars/libs/lars.so: failed to map segment from shared object
Error: package ‘lars’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ammistability’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AMModels’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘aMNLFA-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: aMNLFA.final
> ### Title: aMNLFA final model fitting function
> ### Aliases: aMNLFA.final
> ### Keywords: MNLFA
> 
> ### ** Examples
> 
>  wd <- tempdir()
>  first<-paste0(system.file(package='aMNLFA'),"/examplefiles")
>  the.list <- list.files(first,full.names=TRUE)
>  file.copy(the.list,wd,overwrite=TRUE)
 [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
[16] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
[31] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
[46] TRUE TRUE TRUE TRUE TRUE TRUE
>  ob <- aMNLFA::aMNLFA.object(dir = wd, 
+  mrdata = xstudy, 
+  indicators = paste0("BIN_", 1:12),
+  catindicators = paste0("BIN_", 1:12), 
+  meanimpact = c("AGE", "GENDER", "STUDY"), 
+  varimpact = c("AGE", "GENDER", "STUDY"), 
+  measinvar = c("AGE", "GENDER", "STUDY"),
+  factors = c("GENDER", "STUDY"),
+  ID = "ID",
+  thresholds = FALSE)
>  
>  aMNLFA.final(ob)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: aMNLFA.final ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: snowfall
Loading required package: snow
Loading required package: rlecuyer
Error: package or namespace load failed for ‘rlecuyer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlecuyer/libs/rlecuyer.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlecuyer/libs/rlecuyer.so: failed to map segment from shared object
Error: package ‘rlecuyer’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AMORE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/AMORE/libs/AMORE.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/AMORE/libs/AMORE.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AmostraBrasil’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AMR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  track_methods.cpp:22:16: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  track_methods.cpp:23:16: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  track_methods.cpp:50:22: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  track_methods.cpp:52:22: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  track_methods.cpp:55:27: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/amt.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘amt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AmyloGram’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/slam/libs/slam.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/slam/libs/slam.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘anacor’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/colorspace/libs/colorspace.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/colorspace/libs/colorspace.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘analogsea’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: vegan3d
Loading required package: vegan
Loading required package: permute
Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lattice’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: vegan
Loading required package: permute
Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lattice’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘analytics’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: R.matlab
R.matlab v3.6.2 (2018-09-26) successfully loaded. See ?R.matlab for help.

Attaching package: ‘R.matlab’

The following objects are masked from ‘package:base’:

    getOption, isOpen

Loading required package: fastICA
Error: package or namespace load failed for ‘fastICA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/fastICA/libs/fastICA.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/fastICA/libs/fastICA.so: failed to map segment from shared object
Error: package ‘fastICA’ could not be loaded
Execution halted
Analyz.loadSteps,Analyz: no visible global function definition for
  ‘read.csv’
Undefined global functions or variables:
  read.csv
Consider adding
  importFrom("utils", "read.csv")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AncestryMapper’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/svd/libs/svd.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/svd/libs/svd.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘anchoredDistr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rgenoud
Error: package or namespace load failed for ‘rgenoud’:
 .onLoad failed in loadNamespace() for ‘rgenoud’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rgenoud/libs/rgenoud.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rgenoud/libs/rgenoud.so: failed to map segment from shared object
Error: package ‘rgenoud’ could not be loaded
Execution halted
Non-standard files/directories found at top level:
  ‘AnDE.pdf’ ‘DESCRIPTION.dcf’ ‘helpme’
Loading this package had a fatal error status code 1
Loading log:
Loading required package: discretization
Loading required package: functional
Loading required package: foreign
Error: package or namespace load failed for ‘foreign’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/foreign/libs/foreign.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/foreign/libs/foreign.so: failed to map segment from shared object
Error: package ‘foreign’ could not be loaded
Execution halted
andrews: no visible global function definition for ‘plot.new’
andrews: no visible global function definition for ‘plot.window’
andrews: no visible global function definition for ‘title’
andrews: no visible global function definition for ‘axis’
andrews: no visible global function definition for ‘box’
andrews: no visible global function definition for ‘lines’
andrews: no visible global function definition for ‘rainbow’
andrews: no visible global function definition for ‘hsv’
selectand: no visible global function definition for ‘lines’
Undefined global functions or variables:
  axis box hsv lines plot.new plot.window rainbow title
Consider adding
  importFrom("grDevices", "hsv", "rainbow")
  importFrom("graphics", "axis", "box", "lines", "plot.new",
             "plot.window", "title")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Hmisc
Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lattice’ could not be loaded
Execution halted
plot,ANFIS: no visible binding for global variable ‘X’
plotMF,ANFIS : <anonymous>: no visible global function definition for
  ‘lines’
plotMFs,ANFIS: no visible global function definition for ‘par’
Undefined global functions or variables:
  X lines par
Consider adding
  importFrom("graphics", "lines", "par")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AnglerCreelSurveySimulation’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: raster
Loading required package: sp
Error: package or namespace load failed for ‘sp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘sp’ could not be loaded
Execution halted
Running examples in ‘aniDom-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: estimate_uncertainty_by_repeatability
> ### Title: Calculate the repeatability score of ranks from randomisations
> ###   of the interaction orders.
> ### Aliases: estimate_uncertainty_by_repeatability
> 
> ### ** Examples
> 
> 	
> 	# Generate some input data
> 	data <- generate_interactions(10,20,5,2)
> 	
> 	# Extract winners and losers
> 	winners <- data$interactions$Winner
> 	losers <- data$interactions$Loser
> 	
> 	# Calculate repeatability
> 	r <- estimate_uncertainty_by_repeatability(winners,losers)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Calls: estimate_uncertainty_by_repeatability ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘anim.plots-stub.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘anipaths’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ANN2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘AnnotationBustR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: FindLongestSeq
> ### Title: Find the longest sequence for each species from a list of
> ###   GenBank accession numbers.
> ### Aliases: FindLongestSeq
> 
> ### ** Examples
> 
> #a vector of 4 genbank accessions, there are two for each species.
> genbank.accessions<-c("KP978059.1","KP978060.1","JX516105.1","JX516111.1")
> #returns the longest sequence respectively for the two species.
> long.seq.result<-FindLongestSeq(genbank.accessions)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Calls: FindLongestSeq ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘AnnotationBustR-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
'library' or 'require' call to ‘tcltk’ which was already attached by Depends.
  Please remove these calls from your code.
annot : annotlist: no visible global function definition for
  ‘read.table’
annot : annotlist: no visible global function definition for
  ‘write.table’
annot: no visible global function definition for ‘flush.console’
annot: no visible global function definition for ‘read.table’
Undefined global functions or variables:
  flush.console read.table write.table
Consider adding
  importFrom("utils", "flush.console", "read.table", "write.table")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mc2d
Loading required package: mvtnorm
Error: package or namespace load failed for ‘mvtnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘mvtnorm’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘anocva’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘anomalize’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘anomalyDetection’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘anomaly’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: coda
Error: package or namespace load failed for ‘coda’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘coda’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ANOM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘anonymizer-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: anonymize
> ### Title: Anonymize a vector.
> ### Aliases: anonymize
> 
> ### ** Examples
> 
> set.seed(1)
> anonymize(letters)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Calls: anonymize ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: quadprog
Error: package or namespace load failed for ‘quadprog’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Error: package ‘quadprog’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: caret
Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lattice’ could not be loaded
Execution halted
Package suggested but not available for checking: ‘rhdf5’
Loading this package had a fatal error status code 1
Loading log:
Loading required package: antaresRead
Error: package or namespace load failed for ‘antaresRead’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bit/libs/bit.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bit/libs/bit.so: failed to map segment from shared object
Error: package ‘antaresRead’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘antaresRead’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bit/libs/bit.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bit/libs/bit.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: shiny
Error: package or namespace load failed for ‘shiny’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘shiny’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Anthropometry’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/minpack.lm/libs/minpack.lm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/minpack.lm/libs/minpack.lm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘antitrust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘antiword-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: antiword
> ### Title: Antiword
> ### Aliases: antiword
> 
> ### ** Examples
> 
> text <- antiword("https://jeroen.github.io/files/UDHR-english.doc")
trying URL 'https://jeroen.github.io/files/UDHR-english.doc'
Content type 'application/msword' length 31232 bytes (30 KB)
==================================================
downloaded 30 KB

Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sys/libs/sys.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sys/libs/sys.so: failed to map segment from shared object
Calls: antiword ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AntWeb’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘anyflights’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘help.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘anytime’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
'library' or 'require' call to ‘boot’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Found the following apparent S3 methods exported but not registered:
  print.wald.test
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
varbin: no visible global function definition for ‘boot’
Undefined global functions or variables:
  boot
Running examples in ‘aod-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: iccbin
> ### Title: Intra-Cluster Correlation for Binomial Data
> ### Aliases: iccbin show,iccbin-method
> ### Keywords: htest
> 
> ### ** Examples
> 
> 
> data(rats)
> tmp <- rats[rats$group == "TREAT", ]
> # A: glmm (model linearization)
> iccbin(n, y, data = tmp, method = "A")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Calls: iccbin ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: boot
Loading required package: lme4
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Introduction.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aop’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/graph/libs/BioC_graph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/graph/libs/BioC_graph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: lpSolve
Error: package or namespace load failed for ‘lpSolve’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lpSolve/libs/lpSolve.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lpSolve/libs/lpSolve.so: failed to map segment from shared object
Error: package ‘lpSolve’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ApacheLogProcessor’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘apa’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘apaTables’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘apaText’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘apcluster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘apc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘apdesign-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: apdesign
> ### Title: apdesign: AP coding 'apdesign' returns a data frame with
> ###   additive polynomial coding
> ### Aliases: apdesign
> 
> ### ** Examples
> 
> id <- c(rep(1,10), rep(2, 10))
> y <- c(c(10, 15, 21, 20, 23, 25, 27, 25, 28, 29), 
+      c(12, 16, 18, 20, 20, 22, 28, 27, 29, 31))
> time <- c(c(0.2, 0.5, 0.7), c(0.3, 0.6, 0.75, 0.89), c(0.1, 0.3, 0.8), 
+         c(0.3, 0.6, 0.7, 0.85), c(0.2, 0.7, 0.79), c(0.2, 0.5, 0.75))
> cycle <- c(rep(1, 3), rep(2, 4), rep(3, 3), rep(1, 4), rep(2, 3), rep(3, 3))
> df <- data.frame(id, y, time, cycle)
> apdesign(data = df, id = "id", time_var = "time", cycle_var = "cycle", 
+          center_cycle = 1, center_time = 0, max_degree = c(2,1))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Calls: apdesign ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ape’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aphid’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘aplore3-examples.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘apmsWAPP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/S4Vectors/libs/S4Vectors.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/S4Vectors/libs/S4Vectors.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: bitops
Error: package or namespace load failed for ‘bitops’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Error: package ‘bitops’ could not be loaded
Execution halted
Non-standard file/directory found at top level:
  ‘examples’
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘appell’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/appell/libs/appell.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/appell/libs/appell.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AppliedPredictiveModeling’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rpart/libs/rpart.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rpart/libs/rpart.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: emulator
Loading required package: mvtnorm
Error: package or namespace load failed for ‘mvtnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘mvtnorm’ could not be loaded
Execution halted
Running examples in ‘approxmatch-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: kwaymatching
> ### Title: Create approximately optimal matched strata of multiple groups.
> ### Aliases: kwaymatching tripletmatching
> ### Keywords: matching design
> 
> ### ** Examples
> 	
> 	## Don't show: 
> 	data(Dodgeram) # dodge ram pk 2500
> 	Dodgeram <- Dodgeram[sample(rownames(Dodgeram), 1000),]
> 	grouplabel = 2*Dodgeram$WITHSABS + 1*Dodgeram$NOSAB + 3*Dodgeram$optSAB
> 	
> 	# distance components consists of log propensity 
> 	# distance and rank based Mahalanobis distance.
> 	components <- list(prop = c("AGE", "IMPACT3"), mahal = c("SEX.2", "AGE", "FIRE_EXP1.1"))
> 	wgts <- c(10, 5)
> 	distmat <- multigrp_dist_struc(Dodgeram, grouplabel = grouplabel, components, wgts)	
Error in smahal(grpi1, .data[, vars]) : Please load package 'MASS'
Calls: multigrp_dist_struc -> lapply -> FUN -> smahal
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘apricom’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
runAPSIM: warning in scan(reports_file[i], "", sep = "", skip =
  length(temp), nline = 1): partial argument match of ‘nline’ to
  ‘nlines’
runAPSIM: no visible global function definition for ‘write.table’
runAPSIM: no visible global function definition for ‘read.table’
Undefined global functions or variables:
  read.table write.table
Consider adding
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘APSIM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Non-standard file/directory found at top level:
  ‘apsrtable-Ex.R’
Package in Depends field not imported from: ‘methods’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: erer
Loading required package: lmtest
Loading required package: zoo
Error: package or namespace load failed for ‘zoo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘zoo’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: geoR
Error: package or namespace load failed for ‘geoR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘geoR’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aqp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  am.c:275:9: warning: comparison of array 'readByte' not equal to a null pointer is always true [-Wtautological-pointer-compare]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/aqr.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: xts
Loading required package: zoo
Error: package or namespace load failed for ‘zoo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘zoo’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AquaEnv’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/minpack.lm/libs/minpack.lm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/minpack.lm/libs/minpack.lm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Segmentor3IsBack
Error: package or namespace load failed for ‘Segmentor3IsBack’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Segmentor3IsBack/libs/Segmentor3IsBack.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Segmentor3IsBack/libs/Segmentor3IsBack.so: failed to map segment from shared object
Error: package ‘Segmentor3IsBack’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ARCensReg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Running examples in ‘archdata-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Arnhofen
> ### Title: Point pattern of mining pits from the Neolithic chert mine at
> ###   Arnhofen
> ### Aliases: Arnhofen
> ### Keywords: datasets
> 
> ### ** Examples
> 
> # data and package spatstat by A. Baddeley et al. 2016 for point pattern analysis
> library(archdata)
> data(Arnhofen)
> # package spatstat is described and illustrated in Baddeley et al. (2016)
> library(spatstat)
Loading required package: spatstat.data
Error: package or namespace load failed for ‘spatstat.data’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/spatstat.utils/libs/spatstat.utils.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/spatstat.utils/libs/spatstat.utils.so: failed to map segment from shared object
Error: package ‘spatstat.data’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: modeltools
Loading required package: stats4
Loading required package: nnls
Error: package or namespace load failed for ‘nnls’:
 .onLoad failed in loadNamespace() for ‘nnls’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnls/libs/nnls.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnls/libs/nnls.so: failed to map segment from shared object
Error: package ‘nnls’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘archiDART’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: archivist
Error: package or namespace load failed for ‘archivist’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘archivist’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘archivist’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ArCo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: arules
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
ardec: no visible global function definition for ‘filter’
ardec.lm: no visible global function definition for ‘ar’
ardec.lm: no visible global function definition for ‘lm’
Undefined global functions or variables:
  ar filter lm
Consider adding
  importFrom("stats", "ar", "filter", "lm")
to your NAMESPACE file.
Running examples in ‘areaplot-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: areaplot
> ### Title: Area Plot
> ### Aliases: areaplot areaplot.default areaplot.formula
> 
> ### ** Examples
> 
> areaplot(rpois(10,40))
> areaplot(rnorm(10))
> 
> # formula
> areaplot(Armed.Forces~Year, data=longley)
> areaplot(cbind(Armed.Forces,Unemployed)~Year, data=longley)
> areaplot(.~Year, data=longley)
> 
> # add=TRUE
> plot(1940:1970, 500*runif(31), ylim=c(0,500))
> areaplot(Armed.Forces~Year, data=longley, add=TRUE)
> 
> # data frame
> mydata <- longley[c("Year","GNP")]
> areaplot(mydata)
> 
> # matrix
> areaplot(WorldPhones)
> areaplot(WorldPhones, prop=TRUE)
> 
> # table
> require(MASS)
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
> areaplot(table(Aids2$age))
Error in table(Aids2$age) : object 'Aids2' not found
Calls: areaplot -> table
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘arena2r’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tcltk
Loading required package: corpcor
Error: package or namespace load failed for ‘arf3DS4’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/arf3DS4/libs/arf3DS4.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/arf3DS4/libs/arf3DS4.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ltsa
Error: package or namespace load failed for ‘ltsa’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ltsa/libs/ltsa.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ltsa/libs/ltsa.so: failed to map segment from shared object
Error: package ‘ltsa’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘argon2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/argon2/libs/argon2.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/argon2/libs/argon2.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘getting_started.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Rd file 'sdafilter.Rd':
  \examples lines wider than 100 characters:
     plot(lon,lat,col="lightgrey",type="l",xlim=c(5,18), ylim=c(77.1,79.1),xlab="Longitude",ylab="Latitude")

Rd file 'vmask.Rd':
  \examples lines wider than 100 characters:
     plot(lon,lat,col="lightgrey",type="l",xlim=c(5,18), ylim=c(77.1,79.1),xlab="Longitude",ylab="Latitude")

These lines will be truncated in the PDF manual.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘argparse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘ArgumentChecking.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ARIbrain’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aricode’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ari’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘arkdb’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Error in .requirePackage(package) : unable to find required package 'sp'
  Calls: <Anonymous> ... .extendsForS3 -> extends -> getClassDef -> .requirePackage
  Execution halted
Running examples in ‘ar.matrix-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Q.AR1
> ### Title: Precision matrix for an AR1 process
> ### Aliases: Q.AR1 r.AR1
> 
> ### ** Examples
> 
> require("ggplot2")
Loading required package: ggplot2
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
> # simulate AR1 GMRF
> obs <- r.AR1(100, M=30, sigma=1, rho=.98)
> # resulting matrix is n x M
> dim(obs)
[1] 100  30
> # subtract off the first time point to more easily observe correlation
> obs_adj <- obs - obs[,1]
> # move objects to a data frame
> ar1_df <- data.frame(obs=c(t(obs_adj)), realization=rep(1:100, each=30),
+                      time=rep(1:30, 100))
> # plot each realization
> ggplot(data=ar1_df, aes(time, obs, group=realization, color=realization)) +
+     geom_line()
Error in ggplot(data = ar1_df, aes(time, obs, group = realization, color = realization)) : 
  could not find function "ggplot"
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AROC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: R.utils
Loading required package: R.oo
Loading required package: R.methodsS3
R.methodsS3 v1.7.1 (2016-02-15) successfully loaded. See ?R.methodsS3 for help.
R.oo v1.22.0 (2018-04-21) successfully loaded. See ?R.oo for help.

Attaching package: ‘R.oo’

The following objects are masked from ‘package:methods’:

    getClasses, getMethods

The following objects are masked from ‘package:base’:

    attach, detach, gc, load, save

R.utils v2.7.0 successfully loaded. See ?R.utils for help.

Attaching package: ‘R.utils’

The following object is masked from ‘package:utils’:

    timestamp

The following objects are masked from ‘package:base’:

    cat, commandArgs, getOption, inherits, isOpen, nullfile, parse,
    warnings

Loading required package: aroma.core
Loading required package: R.filesets
Error: package or namespace load failed for ‘R.filesets’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘R.filesets’ could not be loaded
Execution halted
Loading required package: affxparser
Error: package or namespace load failed for ‘affxparser’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/affxparser/libs/affxparser.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/affxparser/libs/affxparser.so: failed to map segment from shared object
aroma.apd v0.6.0 (2015-02-24) successfully loaded. See ?aroma.apd for help.
Warning message:
In .requireBiocPackage("affxparser", neededBy = pkgname) :
  Package 'affxparser' could not be loaded. Without it aroma.apd will not work. Please install it from Bioconductor, cf. http://www.bioconductor.org/

It looks like this package has a loading problem: see the messages for
details.
* checking whether the package can be loaded with stated dependencies ...Loading required package: affxparser
Error: package or namespace load failed for ‘affxparser’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/affxparser/libs/affxparser.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/affxparser/libs/affxparser.so: failed to map segment from shared object
aroma.apd v0.6.0 (2015-02-24) successfully loaded. See ?aroma.apd for help.
Warning message:
In .requireBiocPackage("affxparser", neededBy = pkgname) :
  Package 'affxparser' could not be loaded. Without it aroma.apd will not work. Please install it from Bioconductor, cf. http://www.bioconductor.org/

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages suggested but not available for checking:
  'sfit', 'expectile', 'HaarSeg', 'mpcbs'
Loading this package had a fatal error status code 1
Loading log:
Loading required package: R.utils
Loading required package: R.oo
Loading required package: R.methodsS3
R.methodsS3 v1.7.1 (2016-02-15) successfully loaded. See ?R.methodsS3 for help.
R.oo v1.22.0 (2018-04-21) successfully loaded. See ?R.oo for help.

Attaching package: ‘R.oo’

The following objects are masked from ‘package:methods’:

    getClasses, getMethods

The following objects are masked from ‘package:base’:

    attach, detach, gc, load, save

R.utils v2.7.0 successfully loaded. See ?R.utils for help.

Attaching package: ‘R.utils’

The following object is masked from ‘package:utils’:

    timestamp

The following objects are masked from ‘package:base’:

    cat, commandArgs, getOption, inherits, isOpen, nullfile, parse,
    warnings

Loading required package: R.filesets
Error: package or namespace load failed for ‘R.filesets’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘R.filesets’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Arothron’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running ‘test-all.R’ [0s/0s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Observation-algorithms.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘arrangements’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gmp/libs/gmp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gmp/libs/gmp.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  arrApply.cpp:189:29: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/arrApply.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘arrApply’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: SAGx
Loading required package: multtest
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
    rownames, sapply, setdiff, sort, table, tapply, union, unique,
    unsplit, which, which.max, which.min

Loading required package: Biobase
Error: package or namespace load failed for ‘Biobase’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Biobase/libs/Biobase.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Biobase/libs/Biobase.so: failed to map segment from shared object
Error: package ‘Biobase’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘arsenal’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ars’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ars/libs/ars.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ars/libs/ars.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘artfima’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ltsa/libs/ltsa.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ltsa/libs/ltsa.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ARTool’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ARTP2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ARTP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ARTP/libs/ARTP.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ARTP/libs/ARTP.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ART’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘aRxiv.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tcltk
Error: package or namespace load failed for ‘asbio’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Package suggested but not available for checking: ‘cacheSweave’
Warning: no function found corresponding to methods exports from ‘ascii’ for: ‘show’

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
'library' or 'require' calls in package code:
  ‘cacheSweave’ ‘weaver’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: ‘methods’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
':::' call which should be '::': ‘utils:::RtangleSetup’
  See the note in ?`:::` about the use of this operator.
Unexported objects imported by ':::' calls:
  ‘utils:::.SweaveValidFilenameRegexp’ ‘utils:::RtangleFinish’
  ‘utils:::RtangleRuncode’ ‘utils:::SweaveParseOptions’
  See the note in ?`:::` about the use of this operator.
Unavailable namespaces imported from by ':::' calls:
  ‘cacheSweave’ ‘survival’
  See the note in ?`:::` about the use of this operator.
Found the following apparent S3 methods exported but not registered:
  cbind.ascii
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
S3 methods shown with full name in documentation object 'cbind.ascii':
  ‘cbind.ascii’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘asciiruler’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Running examples in ‘asciiSetupReader-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: sas_ascii_reader
> ### Title: Read ASCII file using SAS Setup file.
> ### Aliases: sas_ascii_reader
> 
> ### ** Examples
> 
> # Text file is zipped to save space.
> dataset_name <- system.file("extdata", "example_data.zip",
+   package = "asciiSetupReader")
> sas_name <- system.file("extdata", "example_setup.sas",
+   package = "asciiSetupReader")
> 
> ## Not run: 
> ##D example <- sas_ascii_reader(dataset_name = dataset_name,
> ##D   sas_name = sas_name)
> ## End(Not run)
> 
> # Does not fix value labels
> example2 <- sas_ascii_reader(dataset_name = dataset_name,
+   sas_name = sas_name, value_label_fix = FALSE)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: sas_ascii_reader ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Introduction_to_asciiReader.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in .requirePackage(package) : unable to find required package ‘sp’
Calls: <Anonymous> ... withCallingHandlers -> is -> getClassDef -> .requirePackage
Execution halted
Running examples in ‘ASGS.foyer-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: latlon2SA
> ### Title: Determine whether coordinates lie in a given statistical area.
> ### Aliases: latlon2SA
> 
> ### ** Examples
> 
> latlon2SA(-35.3, 149.2, to = "STE", yr = "2016")
Loading required package: sp
Error: package or namespace load failed for ‘sp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sp/libs/sp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sp/libs/sp.so: failed to map segment from shared object
Error in .requirePackage(package) : unable to find required package ‘sp’
Calls: latlon2SA -> is -> getClassDef -> .requirePackage
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ash’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ash/libs/ash.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ash/libs/ash.so: failed to map segment from shared object
Execution halted
Packages suggested but not available for checking: 'REBayes', 'Rmosek'
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ashr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: exact2x2
Loading required package: exactci
Loading required package: ssanv
Loading required package: bpcp
Loading required package: coin
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘survival’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ASIP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aslib’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: qtl
Error: package or namespace load failed for ‘qtl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/qtl/libs/qtl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/qtl/libs/qtl.so: failed to map segment from shared object
Error: package ‘qtl’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘asnipe’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: splancs
Loading required package: sp
Error: package or namespace load failed for ‘sp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘sp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: hexbin
Error: package or namespace load failed for ‘hexbin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘hexbin’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aSPC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘aspi.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: gee
Error: package or namespace load failed for ‘gee’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gee/libs/gee.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gee/libs/gee.so: failed to map segment from shared object
Error: package ‘gee’ could not be loaded
Execution halted
Package which this enhances but not available for checking: ‘asreml’
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘asremlPlus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ASSA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ASSA/libs/ASSA.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ASSA/libs/ASSA.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: RColorBrewer
Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lattice’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘assertable’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘assertive.data’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Unavailable namespace imported from by a ':::' call: ‘assertive.strings’
  See the note in ?`:::` about the use of this operator.
Running examples in ‘assertive.data.us-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: assert_all_are_us_social_security_numbers
> ### Title: Is the string a valid US SSN?
> ### Aliases: assert_all_are_us_social_security_numbers
> ###   assert_any_are_us_social_security_numbers
> ###   is_us_social_security_number
> 
> ### ** Examples
> 
> ssns <- c("123-45-6789", "666-45-6789", "123-00-6789")
> is_us_social_security_number(ssns)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Calls: is_us_social_security_number ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Running ‘testthat.R’ [0s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘assertive’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘assertive.strings’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Running examples in ‘assertive.types-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: assert_is_externalptr
> ### Title: Is the input is an external pointer?
> ### Aliases: assert_is_externalptr is_externalptr
> 
> ### ** Examples
> 
> # The xml2 pkg makes heavy use of external pointers
> xptr <- xml2::read_xml("<foo><bar /></foo>")$node
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: :: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Running examples in ‘assertr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: assert
> ### Title: Raises error if predicate is FALSE in any columns selected
> ### Aliases: assert assert_
> 
> ### ** Examples
> 
> 
> # returns mtcars
> assert(mtcars, not_na, vs)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: assert ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘assertr.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AssetCorr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AssetPricing’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deSolve/libs/deSolve.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deSolve/libs/deSolve.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘assignPOP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ASSISTant’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AssocAFC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CompQuadForm/libs/CompQuadForm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CompQuadForm/libs/CompQuadForm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: trust
Error: package or namespace load failed for ‘aster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/aster/libs/aster.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/aster/libs/aster.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘astrochron’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
beamDiskOverlap: no visible global function definition for ‘integrate’
Undefined global functions or variables:
  integrate
Consider adding
  importFrom("stats", "integrate")
to your NAMESPACE file.
fm_unred: no visible global function definition for ‘spline’
galage: no visible global function definition for ‘integrate’
lumdist: no visible global function definition for ‘integrate’
Undefined global functions or variables:
  integrate spline
Consider adding
  importFrom("stats", "integrate", "spline")
to your NAMESPACE file.
Dependence on R version ‘3.4.2’ not with patchlevel 0
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘asus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rwt/libs/rwt.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rwt/libs/rwt.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘asVPC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘asymLD-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: compute.ALD
> ### Title: Compute ALD.
> ### Aliases: compute.ALD
> 
> ### ** Examples
> 
> library(asymLD)
> 
> # An example using haplotype frequencies from Wilson(2010)
> data(hla.freqs)
> hla.a_b <- hla.freqs[hla.freqs$locus1=="A" & hla.freqs$locus2=="B",]
> compute.ALD(hla.a_b)
   ALD.x.y is asymmetric LD for locus x conditioned on locus y

  locus1 locus2       F.1    F.1.2        F.2     F.2.1   ALD.1.2   ALD.2.1
1      A      B 0.1021811 0.340332 0.04876543 0.1903394 0.5150291 0.3857872
> hla.freqs$locus <- paste(hla.freqs$locus1, hla.freqs$locus2, sep="-")
> compute.ALD(hla.freqs[hla.freqs$locus=="C-B",])
   ALD.x.y is asymmetric LD for locus x conditioned on locus y

  locus1 locus2        F.1     F.1.2        F.2     F.2.1   ALD.1.2   ALD.2.1
1      C      B 0.08637241 0.7350216 0.05040254 0.4520268 0.8425979 0.6503396
> # Note: additonal columns on the input dataframe (e.g., "locus" above) are allowed, but
> # ignored by the function.
> 
> # An example using genotype data from the haplo.stats package
> require(haplo.stats)
Loading required package: haplo.stats
Error: package or namespace load failed for ‘haplo.stats’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/survival/libs/survival.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/survival/libs/survival.so: failed to map segment from shared object
> data(hla.demo)
Warning in data(hla.demo) : data set ‘hla.demo’ not found
> geno <- hla.demo[,5:8]  #DPB-DPA
Error: object 'hla.demo' not found
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘asymmetry’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Running examples in ‘atable-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: atable
> ### Title: Create Tables for Reporting of Clinical Trials
> ### Aliases: atable atable.data.frame atable.formula
> 
> ### ** Examples
> 
> # See vignette for more examples:
> # utils::vignette("atable_usage", package = "atable")
> 
> # Analyse datasets::ToothGrowth:
> # Length of tooth for each dose level and delivery method:
> atable::atable(datasets::ToothGrowth,
+   target_cols = 'len',
+   group_col = 'supp',
+   split_cols = 'dose',
+   format_to = 'Word')
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘atable_usage.rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: proto
Loading required package: cairoDevice
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cairoDevice/libs/cairoDevice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cairoDevice/libs/cairoDevice.so: failed to map segment from shared object
Error: package or namespace load failed for ‘cairoDevice’:
 .onLoad failed in loadNamespace() for ‘cairoDevice’, details:
  call: install_all()
  error: This platform is not yet supported by the automatic installer. Please install GTK+ manually, if necessary. See: http://www.gtk.org
Error: package ‘cairoDevice’ could not be loaded
In addition: Warning message:
In fun(libname, pkgname) :
  Failed to load cairoDevice, attempting to install itError in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cairoDevice/libs/cairoDevice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cairoDevice/libs/cairoDevice.so: failed to map segment from shared object

Execution halted
get.est.ATT: no visible global function definition for ‘tail’
get.est.MT: no visible global function definition for ‘tail’
get.est.simple: no visible global function definition for ‘tail’
newton.r: no visible global function definition for ‘tail’
plot.ATE: no visible global function definition for ‘par’
plot.ATE: no visible global function definition for ‘plot’
plot.ATE: no visible global function definition for ‘axis’
plot.ATE: no visible global function definition for ‘abline’
plot.ATE: no visible global function definition for ‘lines’
plot.ATE: no visible global function definition for ‘legend’
plot.ATE: no visible global function definition for ‘points’
print.summary.ATE: no visible global function definition for
  ‘printCoefmat’
summary.ATE: no visible global function definition for ‘qnorm’
summary.ATE: no visible global function definition for ‘pnorm’
Undefined global functions or variables:
  abline axis legend lines par plot pnorm points printCoefmat qnorm
  tail
Consider adding
  importFrom("graphics", "abline", "axis", "legend", "lines", "par",
             "plot", "points")
  importFrom("stats", "pnorm", "printCoefmat", "qnorm")
  importFrom("utils", "tail")
to your NAMESPACE file.
Running examples in ‘atlantistools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: agg_data
> ### Title: Aggregate data using dplyr functionality.
> ### Aliases: agg_data agg_perc group_data
> 
> ### ** Examples
> 
> agg_ref_nums <- agg_data(data = ref_nums, groups = c("species", "agecl"), fun = mean)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: agg_data ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘model-calibration-species.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
atmcmc : rmvtnorm: no visible global function definition for ‘rnorm’
atmcmc: no visible global function definition for ‘rnorm’
atmcmc: no visible global function definition for ‘runif’
atmcmc: no visible global function definition for ‘par’
atmcmc: no visible global function definition for ‘lm’
atmcmc: no visible global function definition for ‘lines’
atmcmc: no visible global function definition for ‘var’
atmcmc: no visible global function definition for ‘cov’
atmcmc: no visible global function definition for ‘quantile’
atmcmc: no visible global function definition for ‘sd’
plotmcmc: no visible global function definition for ‘pdf’
plotmcmc: no visible global function definition for ‘par’
plotmcmc: no visible global function definition for ‘dev.new’
plotmcmc: no visible global function definition for ‘png’
plotmcmc: no visible global function definition for ‘hist’
plotmcmc: no visible global function definition for ‘dev.off’
plotmcmc: no visible global function definition for ‘plot’
plotmcmc: no visible global function definition for ‘lines’
Undefined global functions or variables:
  cov dev.new dev.off hist lines lm par pdf plot png quantile rnorm
  runif sd var
Consider adding
  importFrom("grDevices", "dev.new", "dev.off", "pdf", "png")
  importFrom("graphics", "hist", "lines", "par", "plot")
  importFrom("stats", "cov", "lm", "quantile", "rnorm", "runif", "sd",
             "var")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: DiceDesign
Error: package or namespace load failed for ‘DiceDesign’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DiceDesign/libs/DiceDesign.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DiceDesign/libs/DiceDesign.so: failed to map segment from shared object
Error: package ‘DiceDesign’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘atmopt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AtmRay’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/AtmRay/libs/AtmRay.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/AtmRay/libs/AtmRay.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: grid
Loading required package: partykit
Loading required package: libcoin
Error: package or namespace load failed for ‘libcoin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘libcoin’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘atsd_package.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘attempt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘attrCUSUM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: kyotil
Error: package or namespace load failed for ‘kyotil’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/kyotil/libs/kyotil.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/kyotil/libs/kyotil.so: failed to map segment from shared object
Error: package ‘kyotil’ could not be loaded
Execution halted
plot.AUC: no visible global function definition for ‘plot’
plot.AUC: no visible global function definition for ‘lines’
Undefined global functions or variables:
  lines plot
Consider adding
  importFrom("graphics", "lines", "plot")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: randomForest
Error: package or namespace load failed for ‘randomForest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/randomForest/libs/randomForest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/randomForest/libs/randomForest.so: failed to map segment from shared object
Error: package ‘randomForest’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘auctestr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  pa.c:247:2: warning: incompatible pointer types initializing 'struct audio_instance *(*)(SEXP, float, int)' (aka 'struct audio_instance *(*)(struct SEXPREC *, float, int)') with an expression of type 'void *(SEXP, float, int)' (aka 'void *(struct SEXPREC *, float, int)') [-Wincompatible-pointer-types]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/audio.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘audio’:
 .onLoad failed in loadNamespace() for ‘audio’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/audio/libs/audio.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/audio/libs/audio.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘auditor’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Malformed Description field: should contain one or more complete sentences.
License components which are templates and need '+ file LICENSE':
  MIT
simulateD: no visible global function definition for ‘rgamma’
simulateT: no visible global function definition for ‘runif’
simulateT: no visible global function definition for ‘rbeta’
simulateT: no visible global function definition for ‘rbinom’
Undefined global functions or variables:
  rbeta rbinom rgamma runif
Consider adding
  importFrom("stats", "rbeta", "rbinom", "rgamma", "runif")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘augmentedRCBD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘augSIMEX’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘auk’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aurelius’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: igraph
Error: package or namespace load failed for ‘igraph’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Error: package ‘igraph’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rjags
Loading required package: coda
Error: package or namespace load failed for ‘coda’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘coda’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AUtests’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘autoBagging’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘autocogs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AutoDeskR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: spam
Loading required package: dotCall64
Error: package or namespace load failed for ‘dotCall64’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dotCall64/libs/dotCall64.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dotCall64/libs/dotCall64.so: failed to map segment from shared object
Error: package ‘dotCall64’ could not be loaded
Execution halted
Running examples in ‘autoimage-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: autoimage
> ### Title: Automatic facetting of multiple projected images
> ### Aliases: autoimage
> 
> ### ** Examples
> 
> data(narccap)
> # restructure data for 2 images
> tasmax2 <- tasmax[,,1:2]
> 
> # plot irregularly gridded images with separate legends
> # and usa border
> autoimage(lon, lat, tasmax2, common.legend = FALSE, map = "usa")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/maps/libs/maps.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/maps/libs/maps.so: failed to map segment from shared object
Calls: autoimage ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘autoimage.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘automagic’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Running examples in ‘AutoModel-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: assumptions_check
> ### Title: Multiple Regression Assumption Checking
> ### Aliases: assumptions_check
> 
> ### ** Examples
> 
> freeny_model_formulas <- create_formula_objects("y", c("lag.quarterly.revenue")
+ , c("price.index"))
> freeny_models <- create_model_objects(freeny_model_formulas,
+ dataset = freeny)
> freeny_model <- freeny_models[[length(freeny_models)]]
> assumptions_check(freeny_model)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/zoo/libs/zoo.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/zoo/libs/zoo.so: failed to map segment from shared object
Calls: assumptions_check ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘AutoModel.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Running examples in ‘automultinomial-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MPLE
> ### Title: Maximum pseudolikelihood estimation
> ### Aliases: MPLE
> 
> ### ** Examples
> 
> ##########generating coefficient values and data
> A=igraph::get.adjacency(igraph::make_lattice(c(40,40))) #adjacency matrix A
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Calls: :: ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘auto.pca’:
 .onLoad failed in loadNamespace() for ‘mnormt’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘autoplotly’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: XML
Error: package or namespace load failed for ‘XML’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Error: package ‘XML’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘autoshiny’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘autothresholdr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘autovarCore’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/foreign/libs/foreign.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/foreign/libs/foreign.so: failed to map segment from shared object
Execution halted
Package suggested but not available for checking: ‘BiocInstaller’
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘available’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘averisk’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aVirtualTwins’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rpart/libs/rpart.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rpart/libs/rpart.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘av’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/av/libs/av.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/av/libs/av.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AWR.Athena’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AWR.Kinesis’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AWR.KMS’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AWR’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aws.alexa’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aws.cloudtrail’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aws.comprehend’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aws.ec2metadata’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aws.iam’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘awsjavasdk’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aws.kms’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aws.lambda’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘awsMethods’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/awsMethods/libs/awsMethods.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/awsMethods/libs/awsMethods.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘awspack’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aws.polly’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aws.s3’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aws.ses’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aws.signature’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aws.sns’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aws.sqs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aws.transcribe’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘aws.translate’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘AzureML’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘extend.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: numDeriv
Loading required package: coda
Error: package or namespace load failed for ‘coda’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘coda’ could not be loaded
Execution halted
CRexp_set: no visible global function definition for ‘runif’
b6e6rl: no visible global function definition for ‘runif’
derand_RL: no visible global function definition for ‘runif’
derandexp_RL: no visible global function definition for ‘runif’
nahvyb_expt: no visible global function definition for ‘runif’
roulete: no visible global function definition for ‘runif’
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
.generateTransform: no visible global function definition for ‘sd’
.generateUnitHyperCube: no visible global function definition for
  ‘runif’
.makeBoundedSingleStep: no visible global function definition for
  ‘runif’
.makeBoundedStep: no visible global function definition for ‘runif’
.makeStep: no visible global function definition for ‘runif’
.staircaseSampling: no visible global function definition for ‘runif’
GaussianPrior: no visible global function definition for ‘qnorm’
LogNormalPrior: no visible global function definition for ‘qnorm’
Undefined global functions or variables:
  qnorm runif sd
Consider adding
  importFrom("stats", "qnorm", "runif", "sd")
to your NAMESPACE file.
Error in re-building vignettes:
  ...
Error in loadVignetteBuilder(vigns$pkgdir) : 
  vignette builder ‘R.rsp’ not found
Calls: buildVignettes -> loadVignetteBuilder
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: edgeR
Loading required package: limma
Error: package or namespace load failed for ‘limma’:
 .onLoad failed in loadNamespace() for ‘limma’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/limma/libs/limma.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/limma/libs/limma.so: failed to map segment from shared object
Error: package ‘limma’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘babynames’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BACA’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: sybil
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BACCT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bacistool’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘backblazer-howToUse.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘backpipe.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘backports’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/backports/libs/backports.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/backports/libs/backports.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘backShift’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: grid
Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lattice’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: MCMCpack
Loading required package: coda
Error: package or namespace load failed for ‘coda’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘coda’ could not be loaded
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # Sys.setenv("R_TESTS" = "")
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘badger’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bagRboostR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/randomForest/libs/randomForest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/randomForest/libs/randomForest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bairt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BalanceCheck’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BalancedSampling’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘balance-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: balance.combine
> ### Title: Combine Two Sub-Plots
> ### Aliases: balance.combine
> 
> ### ** Examples
> 
> library(balance)
> data(iris)
> x <- iris[,1:4]
> sbp <- sbp.fromPBA(x)
> res <- balance(x, sbp)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: balance ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘balance.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BALCONY’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Ball’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gam/libs/gam.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gam/libs/gam.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ballr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BAMBI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bamdit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BaMORC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bamp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BaM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bandit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gam/libs/gam.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gam/libs/gam.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BANEScarparkinglite’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bang’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Banded_comment_maker.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BANOVA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘banR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: geocode
> ### Title: Geocode
> ### Aliases: geocode
> 
> ### ** Examples
> 
> geocode(query = "39 quai André Citroën, Paris")
Error in is.url(url) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Calls: geocode ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘geocode.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: magrittr
Error: package or namespace load failed for ‘banter’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘banxicoR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: glmnet
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Using-baRcodeR.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Barnard’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Barnard/libs/Barnard.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Barnard/libs/Barnard.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...

Error: processing vignette ‘barsurf.Rnw’ failed with diagnostics:
 chunk 2 
Error : package or namespace load failed for ‘colorspace’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/colorspace/libs/colorspace.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/colorspace/libs/colorspace.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rJava
Error: package or namespace load failed for ‘rJava’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Error: package ‘rJava’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘basad’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘base2grob’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘base64enc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘base64’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/openssl/libs/openssl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/openssl/libs/openssl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘base64url’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64url/libs/base64url.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64url/libs/base64url.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘baseballDBR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: variables
Error: package or namespace load failed for ‘basefun’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘baseline’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseM/libs/SparseM.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseM/libs/SparseM.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tools
Error: package or namespace load failed for ‘basicspace’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/basicspace/libs/basicspace.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/basicspace/libs/basicspace.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘basictabler’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘basicTrendline’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BASiNET’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BASIX’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BASIX/libs/BASIX.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BASIX/libs/BASIX.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BAS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BAS/libs/BAS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BAS/libs/BAS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BASS/libs/BASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BASS/libs/BASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bastah’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
'library' or 'require' call to ‘hwriter’ which was already attached by Depends.
  Please remove these calls from your code.
prepare_Rd: mkhtml.Rd:31-33: Dropping empty section \details
prepare_Rd: mkhtml.Rd:43-45: Dropping empty section \note
prepare_Rd: mkhtml.Rd:40-42: Dropping empty section \author
prepare_Rd: mkhtml.Rd:37-39: Dropping empty section \references
prepare_Rd: mkhtml.Rd:49-51: Dropping empty section \seealso
Loading this package had a fatal error status code 1
Loading log:
Loading required package: BatchJobs
Loading required package: BBmisc
Error: package or namespace load failed for ‘BBmisc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Error: package ‘BBmisc’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rvest
Loading required package: xml2
Error: package or namespace load failed for ‘xml2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘xml2’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: BBmisc
Error: package or namespace load failed for ‘BBmisc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Error: package ‘BBmisc’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Loading required package: ggplot2
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘ggplot2’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘BaTFLED3D_vignette.rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘batman’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BAT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BAwiR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/minpack.lm/libs/minpack.lm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/minpack.lm/libs/minpack.lm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: combinat

Attaching package: ‘combinat’

The following object is masked from ‘package:utils’:

    combn

Error: package or namespace load failed for ‘BayClone2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BayClone2/libs/BayClone2.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BayClone2/libs/BayClone2.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bayesAB’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bayesammi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  rcpparma_hello_world.cpp:930:4: warning: explicitly assigning value of variable of type 'arma::colvec' (aka 'Col<double>') to itself [-Wself-assign-overloaded]
  rcpparma_hello_world.cpp:930:12: warning: explicitly assigning value of variable of type 'arma::colvec' (aka 'Col<double>') to itself [-Wself-assign-overloaded]
  rcpparma_hello_world.cpp:939:4: warning: explicitly assigning value of variable of type 'arma::colvec' (aka 'Col<double>') to itself [-Wself-assign-overloaded]
  rcpparma_hello_world.cpp:939:12: warning: explicitly assigning value of variable of type 'arma::colvec' (aka 'Col<double>') to itself [-Wself-assign-overloaded]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BayesBD.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BayesBD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BayesBinMix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lpSolve/libs/lpSolve.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lpSolve/libs/lpSolve.so: failed to map segment from shared object
Execution halted
Running examples in ‘bayesboot-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bayesboot
> ### Title: The Bayesian bootstrap
> ### Aliases: bayesboot
> 
> ### ** Examples
> 
> 
> ### A Bayesian bootstrap analysis of a mean ###
> 
> # Heights of the last ten American presidents in cm (Kennedy to Obama).
> heights <- c(183, 192, 182, 183, 177, 185, 188, 188, 182, 185);
> b1 <- bayesboot(heights, mean)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: bayesboot ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > Sys.setenv("R_TESTS" = "")
  > 
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Found the following significant warnings:
  Blasso.cpp:451:51: warning: assigning field to itself [-Wself-assign-field]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/bayesCL.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bayesCL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bayesCL/libs/bayesCL.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bayesCL/libs/bayesCL.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘BayesCombo_vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BayesComm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bayescount’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Dependence on R version ‘3.4.1’ not with patchlevel 0
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BayesCR’:
 .onLoad failed in loadNamespace() for ‘mnormt’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object
Execution halted
Running examples in ‘BayesCTDesign-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: genpwedata
> ### Title: Generating function for Piece-wise Exponential Data.
> ### Aliases: genpwedata
> 
> ### ** Examples
> 
> nvalHC <- 60
> time.vec <- c(0.3,0.9,1.5,2.1,2.4)
> lambdaHC.vec <- c(0.19,0.35,0.56,0.47,0.38,0.34)
> censor.value <- 3
> 
> SampleHistData <- genpwedata(nvalHC, lambdaHC.vec, 1.0, time.vec, censor.value)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Calls: genpwedata ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
BugReports field is not a suitable URL but contains an email address
  which will be used as from R 3.4.0
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tcltk
Loading required package: gWidgets
Error: package or namespace load failed for ‘BAYESDEF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: gWidgets
Loading required package: gWidgetsRGtk2
Loading required package: RGtk2
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RGtk2/libs/RGtk2.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RGtk2/libs/RGtk2.so: failed to map segment from shared object
Error: package or namespace load failed for ‘RGtk2’:
 .onLoad failed in loadNamespace() for ‘RGtk2’, details:
  call: install_all()
  error: This platform is not yet supported by the automatic installer. Please install GTK+ manually, if necessary. See: http://www.gtk.org
Error: package ‘RGtk2’ could not be loaded
In addition: Warning message:
Failed to load RGtk2 dynamic library, attempting to install it. 
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BayesFM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bayesGARCH’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: splines
Loading required package: GIGrvg
Error: package or namespace load failed for ‘GIGrvg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/GIGrvg/libs/GIGrvg.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/GIGrvg/libs/GIGrvg.so: failed to map segment from shared object
Error: package ‘GIGrvg’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: orthopolynom
Loading required package: polynom
Loading required package: VGAM
Loading required package: stats4
Loading required package: splines
Error: package or namespace load failed for ‘VGAM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/VGAM/libs/VGAM.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/VGAM/libs/VGAM.so: failed to map segment from shared object
Error: package ‘VGAM’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BayesH’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BayesH/libs/BayesH.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BayesH/libs/BayesH.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: TrackReconstruction
Loading required package: fields
Loading required package: spam
Loading required package: dotCall64
Error: package or namespace load failed for ‘dotCall64’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dotCall64/libs/dotCall64.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dotCall64/libs/dotCall64.so: failed to map segment from shared object
Error: package ‘dotCall64’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bayesianETAS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bayesianETAS/libs/bayesianETAS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bayesianETAS/libs/bayesianETAS.so: failed to map segment from shared object
Execution halted
Running examples in ‘BayesianGLasso-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: blockGLasso
> ### Title: Block Gibbs sampler function
> ### Aliases: blockGLasso
> 
> ### ** Examples
> 
> # Same example with short MCMC chain:
> s<-.9**toeplitz(0:9)
> set.seed(6)
> x<-MASS::mvrnorm(n=100,mu=rep(0,10),Sigma=s)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Calls: :: ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BayesianNetwork’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bnlearn/libs/bnlearn.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bnlearn/libs/bnlearn.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BayesianTools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bayesImageS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: e1071
Error: package or namespace load failed for ‘e1071’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/class/libs/class.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/class/libs/class.so: failed to map segment from shared object
Error: package ‘e1071’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: bayesTFR
Error: package or namespace load failed for ‘bayesTFR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘bayesTFR’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bayeslm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: LearnBayes
Loading required package: mvtnorm
Error: package or namespace load failed for ‘mvtnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘mvtnorm’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BayesMallows’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BayesMAMS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: R2jags
Loading required package: rjags
Loading required package: coda
Error: package or namespace load failed for ‘coda’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘coda’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: forestplot
Loading required package: grid
Loading required package: magrittr
Loading required package: checkmate
Error: package or namespace load failed for ‘checkmate’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Error: package ‘checkmate’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bayesmix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bayesm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BayesNetBP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
noninform_prior : a : f1: no visible global function definition for
  ‘pbeta’
noninform_prior : a : f1: no visible global function definition for
  ‘dbeta’
noninform_prior : a: no visible global function definition for
  ‘integrate’
noninform_prior: no visible global function definition for ‘rbeta’
noninform_prior: no visible global function definition for ‘optim’
postNullFun : b : f1: no visible global function definition for ‘pbeta’
postNullFun : b : f1: no visible global function definition for ‘dbeta’
postNullFun : b: no visible global function definition for ‘integrate’
prior_prob : a : f1: no visible global function definition for ‘pbeta’
prior_prob : a : f1: no visible global function definition for ‘dbeta’
prior_prob : a: no visible global function definition for ‘integrate’
Undefined global functions or variables:
  dbeta integrate optim pbeta rbeta
Consider adding
  importFrom("stats", "dbeta", "integrate", "optim", "pbeta", "rbeta")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bayesplot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bayesQR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bayesQR/libs/bayesQR.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bayesQR/libs/bayesQR.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BayesRS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BayesS5’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Formula
Loading required package: coda
Error: package or namespace load failed for ‘coda’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘coda’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BayesSingleSub’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BayesSpec’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mvnfast
Error: package or namespace load failed for ‘mvnfast’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘mvnfast’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bayesTFR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BayesTree’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnet/libs/nnet.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnet/libs/nnet.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: foreign
Error: package or namespace load failed for ‘foreign’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/foreign/libs/foreign.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/foreign/libs/foreign.so: failed to map segment from shared object
Error: package ‘foreign’ could not be loaded
Execution halted
validate: no visible binding for global variable ‘qnorm’
validate: no visible global function definition for ‘pchisq’
validate: no visible global function definition for ‘qnorm’
validate: no visible global function definition for ‘plot’
validate: no visible global function definition for ‘axis’
validate: no visible global function definition for ‘points’
validate: no visible global function definition for ‘abline’
Undefined global functions or variables:
  abline axis pchisq plot points qnorm
Consider adding
  importFrom("graphics", "abline", "axis", "plot", "points")
  importFrom("stats", "pchisq", "qnorm")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: shapefiles
Loading required package: foreign
Error: package or namespace load failed for ‘foreign’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/foreign/libs/foreign.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/foreign/libs/foreign.so: failed to map segment from shared object
Error: package ‘foreign’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: boa
Error: package or namespace load failed for ‘BayHap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BayHap/libs/BayHap.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BayHap/libs/BayHap.so: failed to map segment from shared object
Execution halted
'library' or 'require' call to ‘coda’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Rd file 'BPSpostSample.Rd':
  \usage lines wider than 90 characters:
     BPSpostSample(hyp, times, obs = NULL, mclen = 10, burnin = 0, thin = 1, df = 10, etastar = NULL)
  \examples lines wider than 100 characters:
     post<-BPSpostSample(hypars, times = earthquakes$ti, obs = earthquakes$ob, etastar = postmode$etastar)

These lines will be truncated in the PDF manual.
'library' or 'require' call to ‘mvnmle’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
BilogData: no visible global function definition for ‘write.table’
CohensD.rawData: no visible global function definition for ‘var’
EtaSq: no visible global function definition for ‘summary.aov’
HedgesG.rawData: no visible global function definition for ‘var’
LittleMCAR: no visible global function definition for ‘mlest’
LittleMCAR: no visible global function definition for ‘pchisq’
PseudoR2: no visible global function definition for ‘predict’
Undefined global functions or variables:
  mlest pchisq predict summary.aov var write.table
Consider adding
  importFrom("stats", "pchisq", "predict", "summary.aov", "var")
  importFrom("utils", "write.table")
to your NAMESPACE file.
Running examples in ‘BaylorEdPsych-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: LittleMCAR
> ### Title: Little's missing completely at random (MCAR) test
> ### Aliases: LittleMCAR
> ### Keywords: Missing Little's Chi-Square Missing Completely At Random MCAR
> 
> ### ** Examples
> 
> data(EndersTable1_1)
> LittleMCAR(EndersTable1_1)
Loading required package: mvnmle
Error: package or namespace load failed for ‘mvnmle’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvnmle/libs/mvnmle.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvnmle/libs/mvnmle.so: failed to map segment from shared object
Error in LittleMCAR(EndersTable1_1) : 
  You must have mvnmle installed to use LittleMCAR
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘baystability’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: lubridate
Error: package or namespace load failed for ‘lubridate’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Error: package ‘lubridate’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bazar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Package in Depends field not imported from: ‘splines’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BBEST’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DEoptim/libs/DEoptim.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DEoptim/libs/DEoptim.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BBmisc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: stats4
Error: package or namespace load failed for ‘bbmle’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
bbmm.contour: no visible global function definition for ‘na.omit’
bbmm.contour: no visible global function definition for ‘optimize’
bbmm.contour: no visible global function definition for ‘contour’
bbmm.contour: no visible global function definition for ‘points’
bbmm.contour: no visible global function definition for ‘lines’
brownian.bridge: no visible global function definition for ‘sd’
brownian.motion.variance: no visible global function definition for
  ‘optimize’
Undefined global functions or variables:
  contour lines na.omit optimize points sd
Consider adding
  importFrom("graphics", "contour", "lines", "points")
  importFrom("stats", "na.omit", "optimize", "sd")
to your NAMESPACE file.
bbo: no visible global function definition for ‘runif’
bbo: no visible global function definition for ‘tail’
plot.bbo: no visible global function definition for ‘plot’
Undefined global functions or variables:
  plot runif tail
Consider adding
  importFrom("graphics", "plot")
  importFrom("stats", "runif")
  importFrom("utils", "tail")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BB’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: HI
Error: package or namespace load failed for ‘HI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/HI/libs/HI.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/HI/libs/HI.so: failed to map segment from shared object
Error: package ‘HI’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bbw’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: c3net
Loading required package: igraph
Error: package or namespace load failed for ‘igraph’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Error: package ‘igraph’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘bcaboot.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BCA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: abind
Error: package or namespace load failed for ‘BCBCSF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BCBCSF/libs/BCBCSF.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BCBCSF/libs/BCBCSF.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BcDiag’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Biobase/libs/Biobase.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Biobase/libs/Biobase.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: BMA
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘survival’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: FME
Loading required package: deSolve
Error: package or namespace load failed for ‘deSolve’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deSolve/libs/deSolve.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deSolve/libs/deSolve.so: failed to map segment from shared object
Error: package ‘deSolve’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: nimble
Error: package or namespace load failed for ‘nimble’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Error: package ‘nimble’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Bchron’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Bchron/libs/Bchron.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Bchron/libs/Bchron.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Bclim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mclust/libs/mclust.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mclust/libs/mclust.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  sparseFactor.cpp:33:10: warning: explicitly assigning value of variable of type 'Rcpp::IntegerVector' (aka 'Vector<13>') to itself [-Wself-assign-overloaded]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BClustLonG.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bclust’:
 .onLoad failed in loadNamespace() for ‘bclust’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bclust/libs/bclust.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bclust/libs/bclust.so: failed to map segment from shared object
Execution halted
Package suggested but not available for checking: ‘bcmaps.rdata’
Error in re-building vignettes:
  ...
Error: processing vignette ‘add_points.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bcpmeta’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: grid
Error: package or namespace load failed for ‘bcp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bcRep’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bcrm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bcrypt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/openssl/libs/openssl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/openssl/libs/openssl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bcv’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bcv/libs/bcv.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bcv/libs/bcv.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bda’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bda/libs/bda.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bda/libs/bda.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bdDwC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BDgraph’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bdlp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rmarkdown
Error: package or namespace load failed for ‘rmarkdown’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘rmarkdown’ could not be loaded
Execution halted
BDtest: no visible global function definition for ‘binom.test’
CIlnpv: no visible global function definition for ‘qnorm’
CIlnpvak: no visible global function definition for ‘qnorm’
CIlppv: no visible global function definition for ‘qnorm’
CIlppvak: no visible global function definition for ‘qnorm’
CIpvBI: no visible global function definition for ‘rbeta’
CIpvBI: no visible global function definition for ‘quantile’
CIpvBI: no visible global function definition for ‘median’
CIpvBII: no visible global function definition for ‘rbeta’
CIpvBII: no visible global function definition for ‘quantile’
CIpvBII: no visible global function definition for ‘median’
nNPV: no visible global function definition for ‘qnorm’
nPPV: no visible global function definition for ‘qnorm’
plotnPV: no visible global function definition for ‘na.omit’
plotnPV: no visible global function definition for ‘lines’
plotnPV2 : defplot: no visible global function definition for ‘plot’
plotnPV2 : defplot: no visible global function definition for ‘lines’
plotnPV2: no visible global function definition for ‘par’
plotnPV2: no visible global function definition for ‘layout’
simPV: no visible global function definition for ‘rbinom’
simPV: no visible global function definition for ‘quantile’
Undefined global functions or variables:
  binom.test layout lines median na.omit par plot qnorm quantile rbeta
  rbinom
Consider adding
  importFrom("graphics", "layout", "lines", "par", "plot")
  importFrom("stats", "binom.test", "median", "na.omit", "qnorm",
             "quantile", "rbeta", "rbinom")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bdscale’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bdsmatrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bdsmatrix/libs/bdsmatrix.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bdsmatrix/libs/bdsmatrix.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bdvis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/chron/libs/chron.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/chron/libs/chron.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BDWreg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bdynsys’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BEACH’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Package suggested but not available for checking: ‘lumi’
Loading this package had a fatal error status code 1
Loading log:
Loading required package: beadarray
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
    rownames, sapply, setdiff, sort, table, tapply, union, unique,
    unsplit, which, which.max, which.min

Loading required package: Biobase
Error: package or namespace load failed for ‘Biobase’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Biobase/libs/Biobase.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Biobase/libs/Biobase.so: failed to map segment from shared object
Error: package ‘Biobase’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
    rownames, sapply, setdiff, sort, table, tapply, union, unique,
    unsplit, which, which.max, which.min

Error: package or namespace load failed for ‘Biobase’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Biobase/libs/Biobase.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Biobase/libs/Biobase.so: failed to map segment from shared object
Error: package ‘Biobase’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘beadplexr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mclust/libs/mclust.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mclust/libs/mclust.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘beam’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/fdrtool/libs/fdrtool.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/fdrtool/libs/fdrtool.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Loading required package: sm
Error: package or namespace load failed for ‘sm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sm/libs/sm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sm/libs/sm.so: failed to map segment from shared object

Error: processing vignette ‘beanplot.Rnw’ failed with diagnostics:
 chunk 4 (label = singers) 
Error : package ‘sm’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BEDASSLE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BEDMatrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bedr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘beepr’:
 .onLoad failed in loadNamespace() for ‘audio’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/audio/libs/audio.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/audio/libs/audio.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘beezdemand’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘behaviorchange-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: abcd
> ### Title: Acyclic Behavior Change Diagram
> ### Aliases: abcd
> 
> ### ** Examples
> 
> ### Partial acyclic behavior change diagram of only
> ### one performance objective (sub-behavior)
> behaviorchange::abcd(abcd_specs_single_po);
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘belg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘benchmarkmeData-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_datatable_past
> ### Title: Interactive table of results
> ### Aliases: get_datatable_past
> 
> ### ** Examples
> 
> ## Need the DT package
> ## View all results for prog test
> get_datatable_past("prog")
Warning: This function is deprecated and will be removed in the next version. 
              Instead, use https://jumpingrivers.shinyapps.io/benchmarkme/
Error in get_datatable_past("prog") : Install DT package to use datatable
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘benchmarkme’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bench’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bench/libs/bench.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bench/libs/bench.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘benchr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘benford.analysis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BenfordTests’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BenfordTests/libs/BenfordTests.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BenfordTests/libs/BenfordTests.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘benthos’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BEQI2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ergm
Loading required package: network
Error: package or namespace load failed for ‘network’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/network/libs/network.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/network/libs/network.so: failed to map segment from shared object
Error: package ‘network’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘berryFunctions.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Rmpfr
Loading required package: gmp
Error: package or namespace load failed for ‘gmp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gmp/libs/gmp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gmp/libs/gmp.so: failed to map segment from shared object
Error: package ‘gmp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BeSS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bestNormalize’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: HDInterval
Error: package or namespace load failed for ‘BEST’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BetaBit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mboost
Loading required package: parallel
Loading required package: stabs
Error: package or namespace load failed for ‘mboost’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘mboost’ could not be loaded
Execution halted
Non-standard file/directory found at top level:
  ‘extdata’
betafam: no visible global function definition for ‘pnorm’
betafam: no visible global function definition for ‘pchisq’
betafam: no visible global function definition for ‘lm’
betafam: no visible global function definition for ‘coefficients’
betafam: no visible global function definition for ‘glm.fit’
betafam: no visible global function definition for ‘gaussian’
betafam: no visible global function definition for ‘glmnet’
Undefined global functions or variables:
  coefficients gaussian glm.fit glmnet lm pchisq pnorm
Consider adding
  importFrom("stats", "coefficients", "gaussian", "glm.fit", "lm",
             "pchisq", "pnorm")
to your NAMESPACE file.
Rd file 'betafam.Rd':
  \usage lines wider than 90 characters:
     betafam(ped,group.threshold=-1,fix.group.index=NULL, fix.weight=NULL,mute.SMM=TRUE,trait=c("binary","qtl"),LC.test=c("LC.true","LC","si ... [TRUNCATED]

These lines will be truncated in the PDF manual.
Checking should be performed on sources prepared by ‘R CMD build’.
Running examples in ‘betalink-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: prepare_networks
> ### Title: Prepare networks
> ### Aliases: prepare_networks
> 
> ### ** Examples
> 
> data(anemonefish)
> networks <- prepare_networks(anemonefish, TRUE)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: prepare_networks ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘betapart’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/geometry/libs/geometry.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/geometry/libs/geometry.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘betareg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘betas’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BETS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RMySQL/libs/RMySQL.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RMySQL/libs/RMySQL.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BeviMed’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘beyondWhittle’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bfa’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bfast’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bfp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bfw’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: BEDMatrix
Error: package or namespace load failed for ‘BEDMatrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘BEDMatrix’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mgcv
Loading required package: nlme
Error: package or namespace load failed for ‘nlme’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘nlme’ could not be loaded
Execution halted
Running examples in ‘BGGE-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: BGGE
> ### Title: Genotype x Environment models using regression kernel
> ### Aliases: BGGE
> 
> ### ** Examples
> 
> # multi-environment main genotypic model
> library(BGLR)
Error: package or namespace load failed for ‘BGLR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/truncnorm/libs/truncnorm.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/truncnorm/libs/truncnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BGLR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/truncnorm/libs/truncnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/truncnorm/libs/truncnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BGPhazard’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
block.gibbs: no visible global function definition for ‘rmultinom’
rdirichlet: no visible global function definition for ‘rgamma’
Undefined global functions or variables:
  rgamma rmultinom
Consider adding
  importFrom("stats", "rgamma", "rmultinom")
to your NAMESPACE file.
global: no visible global function definition for ‘par’
global: no visible global function definition for ‘runif’
global: no visible global function definition for ‘cov’
mymcmc: no visible global function definition for ‘par’
mymcmc: no visible global function definition for ‘rnorm’
mymcmc: no visible global function definition for ‘runif’
mymcmc: no visible global function definition for ‘cov’
mymcmc: no visible global function definition for ‘lines’
plkhci: no visible global function definition for ‘qchisq’
Undefined global functions or variables:
  cov lines par qchisq rnorm runif
Consider adding
  importFrom("graphics", "lines", "par")
  importFrom("stats", "cov", "qchisq", "rnorm", "runif")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: fmri
Loading required package: awsMethods
Error: package or namespace load failed for ‘awsMethods’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/awsMethods/libs/awsMethods.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/awsMethods/libs/awsMethods.so: failed to map segment from shared object
Error: package ‘awsMethods’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bhrcr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BHSBVAR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: R2HTML
Loading required package: xtable
Error: package or namespace load failed for ‘BHTSpack’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BHTSpack/libs/BHTSpack.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BHTSpack/libs/BHTSpack.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: betareg
Error: package or namespace load failed for ‘betareg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘betareg’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BiasedUrn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BiasedUrn/libs/BiasedUrn.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BiasedUrn/libs/BiasedUrn.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bib2df’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BiBitR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/colorspace/libs/colorspace.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/colorspace/libs/colorspace.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bibliometrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bibtex’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘my-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BiDAG’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/robustbase/libs/robustbase.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/robustbase/libs/robustbase.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘calibration.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: RPostgreSQL
Loading required package: DBI
Error: package or namespace load failed for ‘RPostgreSQL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RPostgreSQL/libs/RPostgreSQL.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RPostgreSQL/libs/RPostgreSQL.so: failed to map segment from shared object
Error: package ‘RPostgreSQL’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bife’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BIFIEsurvey’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: bigmemory
Error: package or namespace load failed for ‘bigmemory’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘bigmemory’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bigchess’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bit/libs/bit.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bit/libs/bit.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bigdatadist’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘BIGDAWG-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: BIGDAWG
> ### Title: BIGDAWG Main Wrapper Function
> ### Aliases: BIGDAWG
> 
> ### ** Examples
> 
> ### The following examples use the synthetic data set bundled with BIGDAWG
> 
> # Haplotype analysis with no missing genotypes for two loci sets
> # Significant haplotypic association with phenotype
> # BIGDAWG(Data="HLA_data", Run.Tests="H", Missing=0, Loci.Set=list(c("DRB1","DQB1")))
> 
> # Hardy-Weinberg and Locus analysis ignoring missing data
> # Significant locus associations with phenotype at all but DQB1
> # BIGDAWG(Data="HLA_data", Run.Tests="L", Missing="ignore")
> 
> # Hardy-Weinberg analysis trimming data to 2-Field resolution
> # Significant locus deviation at DQB1
> BIGDAWG(Data="HLA_data", Run.Tests="HWE", Trim=TRUE, Res=2)
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
          BIGDAWG: Bridging ImmunoGenomic Data Analysis Workflow Gaps
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 

>>>>>>>>>>>>>>>>>>>>>>>>> BEGIN Analysis <<<<<<<<<<<<<<<<<<<<<<<<<

>>>> DATA PROCESSING AND CHECKS.
Removing any missing data. This will affect Hardy-Weinberg Equilibrium test.
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/survival/libs/survival.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/survival/libs/survival.so: failed to map segment from shared object
Calls: BIGDAWG ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘BIGDAWG.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Rmpi
Error: package or namespace load failed for ‘Rmpi’:
 .onLoad failed in loadNamespace() for ‘Rmpi’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rmpi/libs/Rmpi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rmpi/libs/Rmpi.so: failed to map segment from shared object
Error: package ‘Rmpi’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: gmp
Error: package or namespace load failed for ‘gmp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gmp/libs/gmp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gmp/libs/gmp.so: failed to map segment from shared object
Error: package ‘gmp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ff
Loading required package: bit
Error: package or namespace load failed for ‘bit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bit/libs/bit.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bit/libs/bit.so: failed to map segment from shared object
Error: package ‘bit’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bigleaf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/robustbase/libs/robustbase.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/robustbase/libs/robustbase.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: DBI
Error: package or namespace load failed for ‘biglmm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/biglmm/libs/biglmm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/biglmm/libs/biglmm.so: failed to map segment from shared object
Execution halted
Non-standard file/directory found at top level:
  ‘test’
Loading this package had a fatal error status code 1
Loading log:
Loading required package: DBI
Error: package or namespace load failed for ‘biglm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/biglm/libs/biglm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/biglm/libs/biglm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BIGL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bigmatch’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bigmemory’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bigml’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bigQueryR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BigQuic’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘BiG-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: BiG_DA
> ### Title: BiG with half-t prior through a data augmentation approach
> ### Aliases: BiG_DA
> 
> ### ** Examples
> 
> set.seed(1234)
> sim = sim_lvm(G=25, S=6, n_p1=3, rho=runif(6,min=0.3,max=0.9), p_p1=0.6, p_p2=0.8, 
+       lambda=runif(6,min=0.6,max=0.8), n_T=sample(c(5,10,15),6,replace=TRUE))
> BiG_DA(r=sim$r, n_T=sim$n_T, n_p1=3, M=100, burnin=50)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/truncnorm/libs/truncnorm.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/truncnorm/libs/truncnorm.so: failed to map segment from shared object
Calls: BiG_DA ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bigreadr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bigrquery’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BigSEM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bigstatsr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bigstep’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bigtcr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigtcr/libs/bigtcr.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigtcr/libs/bigtcr.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bigtime’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BigVAR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bikedata’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bild’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bild/libs/bild.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bild/libs/bild.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘billboarder’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
chisq.sim.factory : chisq.sim.func: no visible global function
  definition for ‘chisq.test’
rmultnom: no visible global function definition for ‘runif’
Undefined global functions or variables:
  chisq.test runif
Consider adding
  importFrom("stats", "chisq.test", "runif")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: pROC
Error: package or namespace load failed for ‘pROC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘pROC’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BimodalIndex’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: diptest
Error: package or namespace load failed for ‘diptest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/diptest/libs/diptest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/diptest/libs/diptest.so: failed to map segment from shared object
Error: package ‘diptest’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BinarybalancedCut’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BinaryEPPM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘binaryGP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lhs/libs/lhs.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lhs/libs/lhs.so: failed to map segment from shared object
Execution halted
Running ‘run-all.R’ [0s/0s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘binb’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bindata’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/class/libs/class.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/class/libs/class.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bindrcpp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bingat’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/network/libs/network.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/network/libs/network.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘binGroup’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gmp/libs/gmp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gmp/libs/gmp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: wavethresh
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘binman’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘binMto’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘binnednp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mclust/libs/mclust.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mclust/libs/mclust.so: failed to map segment from shared object
Execution halted
Package suggested but not available for checking: ‘metaboData’
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘binneR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: BB
Error: package or namespace load failed for ‘BB’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Error: package ‘BB’ could not be loaded
Execution halted
bin_ps: no visible global function definition for ‘runif’
bin_ps: no visible global function definition for ‘dbinom’
draw_i: no visible global function definition for ‘runif’
Undefined global functions or variables:
  dbinom runif
Consider adding
  importFrom("stats", "dbinom", "runif")
to your NAMESPACE file.
IndivdRUMIndMH: no visible global function definition for
  ‘flush.console’
dRUMAuxMix: no visible global function definition for ‘flush.console’
dRUMHAM: no visible global function definition for ‘flush.console’
dRUMIndMH: no visible global function definition for ‘flush.console’
print.binomlogit: no visible global function definition for ‘is’
summary.binomlogit: no visible global function definition for ‘is’
Undefined global functions or variables:
  flush.console is
Consider adding
  importFrom("methods", "is")
  importFrom("utils", "flush.console")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘binom’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/binom/libs/binom.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/binom/libs/binom.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: binom
Error: package or namespace load failed for ‘binom’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/binom/libs/binom.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/binom/libs/binom.so: failed to map segment from shared object
Error: package ‘binom’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: GenOrd
Loading required package: mvtnorm
Error: package or namespace load failed for ‘mvtnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘mvtnorm’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BinQuasi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/S4Vectors/libs/S4Vectors.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/S4Vectors/libs/S4Vectors.so: failed to map segment from shared object
Execution halted
bins.quantiles: no visible global function definition for ‘quantile’
Undefined global functions or variables:
  quantile
Consider adding
  importFrom("stats", "quantile")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: clinfun
Error: package or namespace load failed for ‘clinfun’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘clinfun’ could not be loaded
Execution halted
Running examples in ‘binst-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: create_breaks
> ### Title: A convenience functon for creating breaks with various methods.
> ### Aliases: create_breaks
> 
> ### ** Examples
> 
> kmeans_breaks <- create_breaks(1:10)
> create_bins(1:10, kmeans_breaks)
 [1] 1 1 1 2 2 2 3 3 3 3
> 
> # passing the k means parameter "centers" = 4
> kmeans_breaks <- create_breaks(1:10, list(centers=4))
> create_bins(1:10, kmeans_breaks)
 [1] 1 1 1 1 2 2 2 3 3 3
> 
> entropy_breaks <- create_breaks(1:10, rep(c(1,2), each = 5), method="entropy")
> create_bins(1:10, entropy_breaks)
 [1] 1 1 1 1 1 2 2 2 2 2
> 
> dt_breaks <- create_breaks(iris$Sepal.Length, iris$Species, method="dt")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rpart/libs/rpart.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rpart/libs/rpart.so: failed to map segment from shared object
Calls: create_breaks ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bio3d’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bioacoustics’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BioCircos’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘BiocManager.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: gtools
Error: package or namespace load failed for ‘gtools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Error: package ‘gtools’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tcltk
Loading required package: vegan
Loading required package: permute
Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lattice’ could not be loaded
Execution halted
BugReports field is not a suitable URL but appears to contain an email address
  not specified by mailto: nor contained in < >
Error in re-building vignettes:
  ...
Error: processing vignette ‘biogas_quick_start.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rexpokit
Error: package or namespace load failed for ‘rexpokit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘rexpokit’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘biogeo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: slam
Error: package or namespace load failed for ‘slam’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/slam/libs/slam.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/slam/libs/slam.so: failed to map segment from shared object
Error: package ‘slam’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Biograph’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bioimagetools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bioinactivation’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deSolve/libs/deSolve.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deSolve/libs/deSolve.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BioInstaller’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Bioi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘biolink’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RMySQL/libs/RMySQL.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RMySQL/libs/RMySQL.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Biolinv’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: pls

Attaching package: ‘pls’

The following object is masked from ‘package:stats’:

    loadings

Loading required package: glmnet
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘biomartr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/S4Vectors/libs/S4Vectors.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/S4Vectors/libs/S4Vectors.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BIOMASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/minpack.lm/libs/minpack.lm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/minpack.lm/libs/minpack.lm.so: failed to map segment from shared object
Execution halted
'library' or 'require' call to ‘MGRASTer’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
.onAttach: no visible global function definition for ‘packageVersion’
biom.matrix: no visible global function definition for ‘packageVersion’
Undefined global functions or variables:
  packageVersion
Consider adding
  importFrom("utils", "packageVersion")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bioOED’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deSolve/libs/deSolve.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deSolve/libs/deSolve.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BioPET’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/VGAM/libs/VGAM.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/VGAM/libs/VGAM.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bioplots’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bioPN’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bioPN/libs/bioPN.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bioPN/libs/bioPN.so: failed to map segment from shared object
Execution halted
Package required but not available: ‘rhdf5’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: bio3d
Error: package or namespace load failed for ‘bio3d’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘bio3d’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: amap
Error: package or namespace load failed for ‘amap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/amap/libs/amap.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/amap/libs/amap.so: failed to map segment from shared object
Error: package ‘amap’ could not be loaded
Execution halted
Running examples in ‘bioset-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: calc_factor_conc
> ### Title: Get a factor to convert concentrations.
> ### Aliases: calc_factor_conc
> 
> ### ** Examples
> 
> library("dplyr")
Error: package or namespace load failed for ‘dplyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘introduction.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘biosignalEMG’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: pkgconfig
Error: package or namespace load failed for ‘biospear’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BioStatR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘biotic.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rpanel
Loading required package: tcltk
Package `rpanel', version 1.1-4: type help(rpanel) for summary information
Loading required package: tkrplot
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
In addition: Warning message:
loading Rplot failed 
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bipartiteD3’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘biplotbootGUI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘birdring’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘bisect-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bisect_semi_suprevised
> ### Title: Add together two numbers.
> ### Aliases: bisect_semi_suprevised
> 
> ### ** Examples
> 
> ## Randomly choose samples to be used as known
> n_known_samples <- 50
> known_samples_indices <- sample.int(nrow(baseline_GSE40279), size = n_known_samples)
> known_samples <- as.matrix(baseline_GSE40279[known_samples_indices, ])
> 
> ## Fit a dirichlet distribution to known samples to use as prior
> fit_dirichlet <- sirt::dirichlet.mle(as.matrix(known_samples))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: :: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘bisect_vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bisectr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mclust
Error: package or namespace load failed for ‘mclust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mclust/libs/mclust.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mclust/libs/mclust.so: failed to map segment from shared object
Error: package ‘mclust’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: bootstrap
Error: package or namespace load failed for ‘bootstrap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bootstrap/libs/bootstrap.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bootstrap/libs/bootstrap.so: failed to map segment from shared object
Error: package ‘bootstrap’ could not be loaded
Execution halted
Running examples in ‘BIS-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_bis
> ### Title: Download, parse, and read into memory a BIS data set
> ### Aliases: get_bis
> 
> ### ** Examples
> 
> datasets <- get_datasets()
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: get_datasets ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘BIS.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘BisRNA-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: BisRNA-package
> ### Title: Analysis of RNA Cytosine-5 Methylation from bisulfite sequencing
> ###   experiments
> ### Aliases: BisRNA BisRNA-package
> 
> ### ** Examples
> 
> 
>  ## Load data
>  data(Bisdata,package="BisRNA")
> 
>  ## Ratio (Poisson parameter / coverage), derived p-values, 
>  #  adjusted for multiple testing using either BH (here), or IHW if available.
>  lambda1 <- RNAmeth.poisson.par(Bisdata1)$estimate
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Calls: RNAmeth.poisson.par ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: bit
Error: package or namespace load failed for ‘bit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bit/libs/bit.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bit/libs/bit.so: failed to map segment from shared object
Error: package ‘bit’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bitops’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bit/libs/bit.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bit/libs/bit.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bitrugs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitrugs/libs/bitrugs.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitrugs/libs/bitrugs.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: compound.Cox
Loading required package: numDeriv
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘survival’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bivariate’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: dfoptim
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘survival’ could not be loaded
Execution halted
bivarcalcn: no visible global function definition for ‘qnorm’
bivarcalcn: no visible global function definition for ‘pnorm’
Undefined global functions or variables:
  pnorm qnorm
Consider adding
  importFrom("stats", "pnorm", "qnorm")
to your NAMESPACE file.
prepare_Rd: bivarcalcn.Rd:49-50: Dropping empty section \details
prepare_Rd: bivarcalcn.Rd:59-61: Dropping empty section \note
prepare_Rd: bivarcalcn.Rd:65-67: Dropping empty section \seealso
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bivgeom’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BivUnifBin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rootSolve/libs/rootSolve.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rootSolve/libs/rootSolve.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘biwavelet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rrcov
Loading required package: robustbase
Error: package or namespace load failed for ‘robustbase’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/robustbase/libs/robustbase.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/robustbase/libs/robustbase.so: failed to map segment from shared object
Error: package ‘robustbase’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bizdays’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bjscrapeR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bkmr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BKPC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/kernlab/libs/kernlab.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/kernlab/libs/kernlab.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘blackbox’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/geometry/libs/geometry.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/geometry/libs/geometry.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Intro.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘blandr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘blastula’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/commonmark/libs/commonmark.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/commonmark/libs/commonmark.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Blaunet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/network/libs/network.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/network/libs/network.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: lavaan
Error: package or namespace load failed for ‘lavaan’:
 .onLoad failed in loadNamespace() for ‘mnormt’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object
Error: package ‘lavaan’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: stringdist
Error: package or namespace load failed for ‘stringdist’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringdist/libs/stringdist.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringdist/libs/stringdist.so: failed to map segment from shared object
Error: package ‘stringdist’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘blin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Package suggested but not available for checking: ‘bigrf’
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘blkbox’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘BLModel-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: BL_post_distr
> ### Title: Computes the Black-Litterman posterior distribution.
> ### Aliases: BL_post_distr
> 
> ### ** Examples
> 
> library(mvtnorm)
Error: package or namespace load failed for ‘mvtnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rtkore
Loading required package: Rcpp
Error: package or namespace load failed for ‘Rcpp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘Rcpp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BlockCov’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: BASIX
Error: package or namespace load failed for ‘BASIX’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BASIX/libs/BASIX.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BASIX/libs/BASIX.so: failed to map segment from shared object
Error: package ‘BASIX’ could not be loaded
Execution halted
Running examples in ‘blockingChallenge-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: makeblocks
> ### Title: Creates strata of size 'bsize' aiming to minimize within strata
> ###   distance.
> ### Aliases: makeblocks
> ### Keywords: Challenge Stratification algorithm
> 
> ### ** Examples
> 
> ## IN THESE EXAMPLES YOU NEED TO LOAD THE R PACKAGE 
> #  'optmatch'.  OTHERWISE, THEY WILL RUN IN A CODE CHECK MODE.
> # library(optmatch)
> ###### 		Usage 1		##########
> data(nh0506)
> ## Don't show: 
> 	nh0506 <- nh0506[1:13,]
> ## End(Don't show)
> res <- makeblocks(nh0506, bsize=4, maxItr=15, 
+          vars=c("female","age","black","hispanic","education","povertyr"))
Error in smahal(.data[, vars]) : Please load package 'MASS'
Calls: makeblocks -> smahal
Execution halted
blockMessage : <anonymous>: no visible global function definition for
  ‘head’
blockMessage: no visible global function definition for ‘head’
blockMessage: no visible global function definition for ‘tail’
Undefined global functions or variables:
  head tail
Consider adding
  importFrom("utils", "head", "tail")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘blockmodeling’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
plotblockrand: no visible global function definition for ‘pdf’
plotblockrand: no visible global function definition for ‘dev.off’
plotblockrand: no visible global function definition for ‘par’
plotblockrand: no visible global function definition for ‘plot.new’
plotblockrand: no visible global function definition for ‘strheight’
plotblockrand: no visible global function definition for ‘strwidth’
plotblockrand: no visible global function definition for ‘text’
plotblockrand: no visible global function definition for ‘lines’
Undefined global functions or variables:
  dev.off lines par pdf plot.new strheight strwidth text
Consider adding
  importFrom("grDevices", "dev.off", "pdf")
  importFrom("graphics", "lines", "par", "plot.new", "strheight",
             "strwidth", "text")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘blocksdesign’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/AlgDesign/libs/AlgDesign.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/AlgDesign/libs/AlgDesign.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘blockseg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘blockTools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Unavailable namespace imported from by a ':::' call: ‘servr’
  See the note in ?`:::` about the use of this operator.
Running examples in ‘blogdown-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: shortcode
> ### Title: Helper functions to write Hugo shortcodes using the R syntax
> ### Aliases: shortcode shortcode_html shortcodes
> 
> ### ** Examples
> 
> library(blogdown)
> 
> shortcode("tweet", "1234567")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Calls: shortcode ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Running ‘test-all.R’ [0s/0s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testit)
  > test_pkg('blogdown')
  Error from loadNamespace(name) 
  Error in dyn.load(file, DLLpath = DLLpath, ...) : 
    unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/yaml/libs/yaml.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/yaml/libs/yaml.so: failed to map segment from shared object
  Calls: test_pkg ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BLOQ’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘blorr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BLPestimatoR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: SuppDists
Error: package or namespace load failed for ‘SuppDists’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SuppDists/libs/SuppDists.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SuppDists/libs/SuppDists.so: failed to map segment from shared object
Error: package ‘SuppDists’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘blsAPI’:
 .onLoad failed in loadNamespace() for ‘rjson’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rjson/libs/rjson.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rjson/libs/rjson.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BLSM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
File
  inst/LICENCE
will install at top-level and is not mentioned in the DESCRIPTION file.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: drc
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Amelia
Loading required package: Rcpp
Error: package or namespace load failed for ‘Rcpp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘Rcpp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BMhyb’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BMhyd’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bmixture’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bmmix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: xml2
Error: package or namespace load failed for ‘xml2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘xml2’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bmrm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/LowRankQP/libs/LowRankQP.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/LowRankQP/libs/LowRankQP.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BMRV’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BMRV/libs/BMRV.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BMRV/libs/BMRV.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: partitions
Error: package or namespace load failed for ‘partitions’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gmp/libs/gmp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gmp/libs/gmp.so: failed to map segment from shared object
Error: package ‘partitions’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bnclassify’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
make_topology: no visible global function definition for ‘runif’
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bnlearn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bnlearn/libs/bnlearn.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bnlearn/libs/bnlearn.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BNN’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bnnSurvival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BNPMediation’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BNPMIXcluster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bnpmr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bnpmr/libs/bnpmr.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bnpmr/libs/bnpmr.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘bnpsd.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: bnlearn
Error: package or namespace load failed for ‘bnlearn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bnlearn/libs/bnlearn.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bnlearn/libs/bnlearn.so: failed to map segment from shared object
Error: package ‘bnlearn’ could not be loaded
Execution halted
Failed with error:  'package 'sp' could not be loaded'
  Error in .requirePackage(package) : 
    unable to find required package 'raster'
  Calls: <Anonymous> ... .extendsForS3 -> extends -> getClassDef -> .requirePackage
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘bnspatial.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BNSP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘bnviewer-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: strength.viewer
> ### Title: Interactive Bayesian Network Strength Viewer.
> ### Aliases: strength.viewer
> 
> ### ** Examples
> 
> 
> library(bnlearn)
Error: package or namespace load failed for ‘bnlearn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bnlearn/libs/bnlearn.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bnlearn/libs/bnlearn.so: failed to map segment from shared object
Execution halted
Running ‘coronary.R’ [0s/0s]
Running the tests in ‘tests/coronary.R’ failed.
Complete output:
  > library(bnlearn)
  Error: package or namespace load failed for 'bnlearn' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bnlearn/libs/bnlearn.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bnlearn/libs/bnlearn.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘bodenmiller.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: hash
hash-2.2.6 provided by Decision Patterns

Loading required package: DIME
Error: package or namespace load failed for ‘DIME’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DIME/libs/DIME.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DIME/libs/DIME.so: failed to map segment from shared object
Error: package ‘DIME’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘boilerpipeR’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Running examples in ‘BOIN-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get.oc.comb
> ### Title: Generate operating characteristics for drug combination trials
> ### Aliases: get.oc.comb
> 
> ### ** Examples
> 
> 
> ###### drug-combination trial ######
> 
> ##### combination trial to find a single MTD  ######
> 
> ## get the operating characteristics for BOIN design
> p.true <- matrix(c(0.01,0.03,0.10,0.20,0.30,
+                  0.03,0.05,0.15,0.30,0.60,
+                  0.08,0.10,0.30,0.60,0.75), byrow=TRUE, ncol=5)
> 
> oc.comb <- get.oc.comb(target=0.3, p.true, ncohort=20, cohortsize=3,
+    n.earlystop=12, startdose=c(1,1), ntrial=100)
Error: .onLoad failed in loadNamespace() for 'Iso', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Iso/libs/Iso.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Iso/libs/Iso.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bold’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BoltzMM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bomrang’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BondValuation’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: qvalue
Error: package or namespace load failed for ‘qvalue’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘qvalue’ could not be loaded
Execution halted
Unavailable namespace imported from by a ':::' call: ‘rmarkdown’
  See the note in ?`:::` about the use of this operator.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Rlab
Rlab 2.15.1 attached.


Attaching package: ‘Rlab’

The following objects are masked from ‘package:stats’:

    dexp, dgamma, dweibull, pexp, pgamma, pweibull, qexp, qgamma,
    qweibull, rexp, rgamma, rweibull

The following object is masked from ‘package:datasets’:

    precip

Loading required package: BoolNet
Error: package or namespace load failed for ‘BoolNet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Error: package ‘BoolNet’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BoolNet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Found the following non-portable file paths:
  Boom/inst/include/Models/Hierarchical/PosteriorSamplers/HierarchicalGaussianRegressionAsisSampler.hpp
  Boom/inst/include/Models/PointProcess/PosteriorSamplers/HomogeneousPoissonProcessPosteriorSampler.hpp
  Boom/inst/include/Models/PointProcess/PosteriorSamplers/MarkovModulatedPoissonProcessPosteriorSampler.hpp

Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Boom
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘boostmtree’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/randomForestSRC/libs/randomForestSRC.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/randomForestSRC/libs/randomForestSRC.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘boostr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: genetics
Loading required package: combinat

Attaching package: ‘combinat’

The following object is masked from ‘package:utils’:

    combn

Loading required package: gdata
Error: package or namespace load failed for ‘gdata’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Error: package ‘gdata’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bootcluster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Execution halted
Running examples in ‘boot-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: censboot
> ### Title: Bootstrap for Censored Data
> ### Aliases: censboot cens.return
> ### Keywords: survival
> 
> ### ** Examples
> 
> library(survival)
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bootruin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bootruin/libs/bootruin.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bootruin/libs/bootruin.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mixOmics
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: MatrixEQTL
Error: package or namespace load failed for ‘BootstrapQTL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bootstrap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bootstrap/libs/bootstrap.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bootstrap/libs/bootstrap.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bootSVD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bit/libs/bit.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bit/libs/bit.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: boot
Loading required package: plyr
Error: package or namespace load failed for ‘plyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘plyr’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BootValidation’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ranger
Error: package or namespace load failed for ‘ranger’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘ranger’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BosonSampling’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BoSSA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bossMaps’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Rd file 'beq.lin.Rd':
  \examples lines wider than 100 characters:
     plot(x,h_sol0,type="l",lty=1,main=paste("Water Surface Elevetion after",t,"days",sep=" "),xlab="x[m]",ylab="h[m]")

Rd file 'beq.song.Rd':
  \examples lines wider than 100 characters:
     plot(x,h_sol1,type="l",lty=1,main="Water Surface Elevetion (Song at's solution) ",xlab="x[m]",ylab="h[m]")

These lines will be truncated in the PDF manual.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘boxcoxmix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/statmod/libs/statmod.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/statmod/libs/statmod.so: failed to map segment from shared object
Execution halted
Running examples in ‘boxoffice-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: boxoffice
> ### Title: Download Information on Box Office Results for Movies
> ### Aliases: boxoffice
> 
> ### ** Examples
> 
> # Uses the-numbers.com website.
> boxoffice(dates = as.Date("2017-12-25"))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Calls: boxoffice ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Using-boxoffice.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘boxr.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bpa’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘bpbounds.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: scatterplot3d
Loading required package: rgl
Error: package or namespace load failed for ‘rgl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘rgl’ could not be loaded
Execution halted
Running ‘FirstObsCensored.R’ [0s/0s]
  Running ‘abmmWarningTest.R’ [0s/0s]
  Running ‘tests.R’ [0s/0s]
Running the tests in ‘tests/abmmWarningTest.R’ failed.
Complete output:
  > ## Thanks to Marcel Wolbers for finding this problem.
  > ## It used to produce a warning, but the answers were correct.
  > ## Now should not produce a warning
  > 
  > library(bpcp)
  > library(survival)
  Error: package or namespace load failed for 'survival' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
  Execution halted
bPeaksAnalysis: no visible global function definition for ‘write.table’
dataReading: no visible global function definition for ‘read.table’
dataSmoothing: no visible global function definition for ‘filter’
peakDetection: no visible global function definition for ‘quantile’
peakDetection: no visible global function definition for ‘pdf’
peakDetection: no visible global function definition for ‘par’
peakDetection: no visible global function definition for ‘plot’
peakDetection: no visible global function definition for ‘text’
peakDetection: no visible global function definition for ‘abline’
peakDetection: no visible global function definition for ‘points’
peakDetection: no visible global function definition for ‘dev.off’
peakDetection: no visible global function definition for ‘write.table’
peakDrawing: no visible global function definition for ‘par’
peakDrawing: no visible global function definition for ‘plot’
peakDrawing: no visible global function definition for ‘abline’
peakLocation: no visible global function definition for ‘read.table’
peakLocation: no visible global function definition for ‘pdf’
peakLocation: no visible global function definition for ‘barplot’
peakLocation: no visible global function definition for ‘dev.off’
peakLocation: no visible global function definition for ‘write.table’
Undefined global functions or variables:
  abline barplot dev.off filter par pdf plot points quantile read.table
  text write.table
Consider adding
  importFrom("grDevices", "dev.off", "pdf")
  importFrom("graphics", "abline", "barplot", "par", "plot", "points",
             "text")
  importFrom("stats", "filter", "quantile")
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BPEC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bpkde’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bpkde/libs/bpkde.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bpkde/libs/bpkde.so: failed to map segment from shared object
Execution halted
Running examples in ‘BPM-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: BPM
> ### Title: BPM software package
> ### Aliases: BPM BPM-package
> 
> ### ** Examples
> 
> ### need to install package "limma"
> ### source("https://bioconductor.org/biocLite.R");biocLite("limma");
> library(BPM);
> BayPM(simUCEC,20,2);
Error: .onLoad failed in loadNamespace() for 'limma', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/limma/libs/limma.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/limma/libs/limma.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bpnreg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bqtl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bqtl/libs/bqtl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bqtl/libs/bqtl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BradleyTerry2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/brglm/libs/brglm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/brglm/libs/brglm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BradleyTerryScalable’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Package suggested but not available for checking: ‘installr’
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BrailleR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘brainKCCA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/kernlab/libs/kernlab.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/kernlab/libs/kernlab.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Branching’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Branching/libs/Branching.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Branching/libs/Branching.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘brant’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: dplyr
Error: package or namespace load failed for ‘dplyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Error: package ‘dplyr’ could not be loaded
Execution halted
Running examples in ‘brazilmaps-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_brmap
> ### Title: Get Brazilian maps from different geographic levels
> ### Aliases: get_brmap
> ### Keywords: IBGE geographic levels shapefile spatial
> 
> ### ** Examples
> 
> ## Retrieving the map from the State of Rio de Janeiro
> rio_map <- get_brmap(geo = "State",
+                      geo.filter = list(State = 33),
+                      class = "sf")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: get_brmap ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
apply.breaks: no visible binding for global variable ‘median’
break.clust: no visible global function definition for ‘plot’
break.clust: no visible global function definition for ‘median’
breakage.plot: no visible binding for global variable ‘median’
breakage.plot: no visible global function definition for ‘plot’
breakage.plot: no visible global function definition for ‘abline’
breakage.plot: no visible global function definition for ‘lm’
find.bottom: no visible global function definition for ‘filter’
fit.breakage: no visible global function definition for ‘optim’
fit.breakage: no visible global function definition for ‘plot’
fit.breakage: no visible global function definition for ‘points’
fit.sensitivity.plot: no visible global function definition for
  ‘contour’
fit.sensitivity.plot: no visible global function definition for
  ‘points’
fit.sensitivity.plot: no visible global function definition for ‘text’
Undefined global functions or variables:
  abline contour filter lm median optim plot points text
Consider adding
  importFrom("graphics", "abline", "contour", "plot", "points", "text")
  importFrom("stats", "filter", "lm", "median", "optim")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘breakDown’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘breakfast-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: hybrid.cpt
> ### Title: Multiple change-point detection in the mean of a vector using a
> ###   hybrid between the TGUH and Adaptive WBS methods.
> ### Aliases: hybrid.cpt
> 
> ### ** Examples
> 
> teeth <- rep(rep(0:1, each=5), 20)
> teeth.noisy <- teeth + rnorm(200)/5
> teeth.cleaned <- hybrid.cpt(teeth.noisy)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: hybrid.cpt ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘breakpoint’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘breathtestcore’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: snowfall
Loading required package: snow
Loading required package: Rcpp
Error: package or namespace load failed for ‘Rcpp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘Rcpp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bReeze’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘BRETIGEA_basic.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘brglm2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: profileModel
Error: package or namespace load failed for ‘brglm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/brglm/libs/brglm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/brglm/libs/brglm.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘the_bridgedist_basics.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bridger2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bridgesampling’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: RANN
Error: package or namespace load failed for ‘RANN’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RANN/libs/RANN.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RANN/libs/RANN.so: failed to map segment from shared object
Error: package ‘RANN’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘briskaR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘brlrmr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fil
> ### Title: fil
> ### Aliases: fil
> 
> ### ** Examples
> 
> ## Not run: 
> ##D #############################################
> ##D ########### Simulated Example ###############
> ##D #############################################
> ##D data(simulated.data)  # load simulated data
> ##D 
> ##D # parameter definition
> ##D beta0 <- 1
> ##D beta1 <- 1
> ##D beta2 <- 1
> ##D beta3 <- 1
> ##D beta4 <- 1
> ##D 
> ##D # parameter definition for missing indicator
> ##D alpha0 <- -1.1
> ##D alpha1 <- -1
> ##D alpha2 <- 1
> ##D alpha3 <- 1
> ##D alpha4 <- 1
> ##D alpha5 <- -1
> ##D 
> ##D parameter <- c(beta0, beta1, beta2, beta3, beta4,
> ##D                alpha0, alpha1, alpha2, alpha3, alpha4, alpha5)
> ##D 
> ##D fil(y ~ x1 + x2 + x3 + x4, data = simulated.data, parameter,
> ##D family = binomial(link = "logit"), na.action = na.pass)
> ## End(Not run)
> 
> #############################################
> ##### Real data example with separation #####
> #############################################
> data(nhanes)  # load nhanes data
> fil(hyp ~ age2 + age3, data = nhanes, family = binomial(link = "logit"), na.action = na.pass)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/brglm/libs/brglm.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/brglm/libs/brglm.so: failed to map segment from shared object
Calls: fil ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Formula
Error: package or namespace load failed for ‘brnn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/brnn/libs/brnn.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/brnn/libs/brnn.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘broman’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/broman/libs/broman.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/broman/libs/broman.so: failed to map segment from shared object
Execution halted
Package suggested but not available for checking: ‘glmmADMB’
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘broom.mixed’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘broom’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘brotli’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/brotli/libs/brotli.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/brotli/libs/brotli.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BrownDog’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘brranching’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘brr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SuppDists/libs/SuppDists.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SuppDists/libs/SuppDists.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘brt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BRugs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: DiffBind
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
    rownames, sapply, setdiff, sort, table, tapply, union, unique,
    unsplit, which, which.max, which.min

Loading required package: S4Vectors
Error: package or namespace load failed for ‘S4Vectors’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/S4Vectors/libs/S4Vectors.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/S4Vectors/libs/S4Vectors.so: failed to map segment from shared object
Error: package ‘S4Vectors’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘bs4Intro.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bsamGP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bsearchtools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BSGW’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: splines
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘survival’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BSL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BsMD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BsMD/libs/BsMD.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BsMD/libs/BsMD.so: failed to map segment from shared object
Execution halted
plot.bspec: no visible global function definition for ‘par’
plot.bspec: no visible global function definition for ‘plot’
plot.bspec: no visible global function definition for ‘matlines’
plot.bspec: no visible global function definition for ‘points’
plot.bspec: no visible global function definition for ‘axis’
plot.bspec: no visible global function definition for ‘mtext’
plot.bspec: no visible global function definition for ‘axTicks’
plot.bspec: no visible global function definition for ‘box’
plot.bspecACF: no visible global function definition for ‘plot’
plot.bspecACF: no visible global function definition for ‘abline’
plot.bspecACF: no visible global function definition for ‘matlines’
Undefined global functions or variables:
  abline axTicks axis box matlines mtext par plot points
Consider adding
  importFrom("graphics", "abline", "axTicks", "axis", "box", "matlines",
             "mtext", "par", "plot", "points")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bsplinePsd’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bsplus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Found the following apparent S3 methods exported but not registered:
  print.dir.cond print.dir.ord
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Found the following significant warnings:
  helpers.c:365:19: warning: absolute value function 'fabsf' given an argument of type 'double' but has parameter of type 'float' which may cause truncation of value [-Wabsolute-value]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BSquare.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BSSasymp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bssm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bssn’:
 .onLoad failed in loadNamespace() for ‘mnormt’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: gbm
Error: package or namespace load failed for ‘gbm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘gbm’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: BoomSpikeSlab
Loading required package: Boom
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘btb’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BTdecayLasso’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: xergm.common
Loading required package: ergm
Loading required package: network
Error: package or namespace load failed for ‘network’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/network/libs/network.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/network/libs/network.so: failed to map segment from shared object
Error: package ‘network’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BTR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BTSPAS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BTYDplus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: hypergeo
Error: package or namespace load failed for ‘hypergeo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘hypergeo’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bucky’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bujar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bulletr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tm
Loading required package: NLP
Error: package or namespace load failed for ‘tm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘tm’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘bunching_with_bunchr.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bupaR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Running examples in ‘burnr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: composite
> ### Title: Composite fire events in fhx object returning composited object
> ###   with prominent fires.
> ### Aliases: composite
> 
> ### ** Examples
> 
> data(lgr2)
> composite(lgr2)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: composite ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
alpha.proxy: no visible global function definition for ‘filled.contour’
alpha.proxy: no visible global function definition for ‘axis’
alpha.proxy: no visible global function definition for ‘contour’
factor.model.stat: no visible global function definition for ‘quantile’
factor.model.stat: no visible global function definition for ‘lsfit’
partial.rainbow: no visible binding for global variable ‘rainbow’
var.shrink.eqcor: no visible global function definition for ‘var’
var.shrink.eqcor: no visible global function definition for ‘quantile’
var.shrink.eqcor: no visible global function definition for ‘cov2cor’
Undefined global functions or variables:
  axis contour cov2cor filled.contour lsfit quantile rainbow var
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "axis", "contour", "filled.contour")
  importFrom("stats", "cov2cor", "lsfit", "quantile", "var")
to your NAMESPACE file.
plot.bursts: no visible global function definition for ‘plot’
plot.bursts: no visible global function definition for ‘axis’
plot.bursts: no visible global function definition for ‘arrows’
Undefined global functions or variables:
  arrows axis plot
Consider adding
  importFrom("graphics", "arrows", "axis", "plot")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BusinessDuration’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/chron/libs/chron.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/chron/libs/chron.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: prodlim
Error: package or namespace load failed for ‘prodlim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘prodlim’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bvarsv’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Rd file 'bvenn.Rd':
  \examples lines wider than 100 characters:
                     bvenn(list(Set1 = sample(letters, 16), Set2 = sample(letters, 3+ 3*j), Set3 = sample(letters, 7)), add = TRUE, fontsize ... [TRUNCATED]

These lines will be truncated in the PDF manual.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bvls’:
 .onLoad failed in loadNamespace() for ‘bvls’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bvls/libs/bvls.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bvls/libs/bvls.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: deSolve
Error: package or namespace load failed for ‘deSolve’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deSolve/libs/deSolve.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deSolve/libs/deSolve.so: failed to map segment from shared object
Error: package ‘deSolve’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BVSNLP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  wgr20180916.cpp:1466:39: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  wgr20180916.cpp:1466:66: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  wgr20180916.cpp:1473:39: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  wgr20180916.cpp:1473:66: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/bWGR.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bWGR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘BWStest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘bytescircle’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bytescircle/libs/bytescircle.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bytescircle/libs/bytescircle.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘c060’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘c14bazAAR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘c2c-workflow.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘c3’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘C443’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘C50’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tools
Loading required package: ggplot2
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘ggplot2’ could not be loaded
Execution halted
cabootcrs: no visible global function definition for ‘read.table’
cabootcrs: no visible global function definition for ‘rmultinom’
cabootcrs: no visible global function definition for ‘rpois’
plotca : plotonepic: no visible global function definition for ‘qchisq’
plotca : plotonepic: no visible global function definition for
  ‘dev.new’
plotca : plotonepic: no visible global function definition for ‘plot’
plotca : plotonepic: no visible global function definition for ‘points’
plotca : plotonepic: no visible global function definition for ‘abline’
plotca : plotonepic: no visible global function definition for ‘legend’
plotca : plotonepic: no visible global function definition for ‘title’
plotca : plotonepic: no visible global function definition for ‘lines’
plotca : plotonepic: no visible global function definition for ‘text’
plotca: no visible global function definition for ‘colours’
plotca: no visible global function definition for ‘rainbow’
plotca: no visible global function definition for ‘read.table’
Undefined global functions or variables:
  abline colours dev.new legend lines plot points qchisq rainbow
  read.table rmultinom rpois text title
Consider adding
  importFrom("grDevices", "colours", "dev.new", "rainbow")
  importFrom("graphics", "abline", "legend", "lines", "plot", "points",
             "text", "title")
  importFrom("stats", "qchisq", "rmultinom", "rpois")
  importFrom("utils", "read.table")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: dynlm
Loading required package: zoo
Error: package or namespace load failed for ‘zoo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘zoo’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: JGR
Loading required package: rJava
Error: package or namespace load failed for ‘rJava’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Error: package ‘rJava’ could not be loaded
Execution halted
Running examples in ‘caesar-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: caesar
> ### Title: Encrypt and Decrypt text using the Caesar cipher
> ### Aliases: caesar
> 
> ### ** Examples
> 
> # Please see this for more info.
> # https://en.wikipedia.org/wiki/Caesar_cipher
> 
> caesar("cats are friends!")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Calls: caesar ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘caffsim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CAinterprTools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cairoDevice/libs/cairoDevice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cairoDevice/libs/cairoDevice.so: failed to map segment from shared object
Error: package or namespace load failed for ‘cairoDevice’:
 .onLoad failed in loadNamespace() for ‘cairoDevice’, details:
  call: install_all()
  error: This platform is not yet supported by the automatic installer. Please install GTK+ manually, if necessary. See: http://www.gtk.org
In addition: Warning message:
In fun(libname, pkgname) :
  Failed to load cairoDevice, attempting to install itError in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cairoDevice/libs/cairoDevice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cairoDevice/libs/cairoDevice.so: failed to map segment from shared object

Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Cairo’:
 .onLoad failed in loadNamespace() for ‘Cairo’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Cairo/libs/Cairo.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Cairo/libs/Cairo.so: failed to map segment from shared object
Execution halted
Running examples in ‘CAISEr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: print.CAISEr
> ### Title: print.CAISEr
> ### Aliases: print.CAISEr
> 
> ### ** Examples
> 
> # Example using dummy algorithms and instances. See ?dummyalgo for details.
> # In this case all instances are the same, so we expect all cases to return
> # a percent difference of approx. phi.j = 1.0 and sample sizes of
> # approx. n1 = 31, n2 = 87
> algorithm1 <- list(FUN = "dummyalgo", alias = "algo1",
+                    distribution.fun = "rnorm",
+                    distribution.pars = list(mean = 10, sd = 1))
> algorithm2 <- list(FUN = "dummyalgo", alias = "algo2",
+                    distribution.fun = "rnorm",
+                    distribution.pars = list(mean = 20, sd = 4))
> algolist <- list(algorithm1, algorithm2)
> instlist <- vector(100, mode = "list")
> for (i in 1:100) instlist[[i]] <- list(FUN = "dummyinstance",
+                                        alias = paste0("Inst. ", i))
> 
> out <- run_experiment(Instance.list = instlist,
+                       Algorithm.list = algolist,
+                       power = 0.8,
+                       d = 1,
+                       sig.level = 0.01,
+                       se.max = 0.05,
+                       dif = "perc",
+                       nmax   = 200,
+                       seed   = 1234)
CAISEr running
-----------------------------
Required number of instances: 16
Available number of instances: 100
-----------------------------Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Calls: run_experiment ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Adapting_Algorithm_for_CAISEr.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CALF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘calibrateBinary’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lhs/libs/lhs.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lhs/libs/lhs.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: survey
Loading required package: grid
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CalibratR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CaliCo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DiceDesign/libs/DiceDesign.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DiceDesign/libs/DiceDesign.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘callr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/processx/libs/processx.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/processx/libs/processx.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘calpassapi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘CAMS_solar_data.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘camtrapR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/overlap/libs/overlap.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/overlap/libs/overlap.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cancensus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cancerGI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cancerTiming’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘canprot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CHNOSZ/libs/CHNOSZ.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CHNOSZ/libs/CHNOSZ.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CANSIM2R’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running ‘cX-ui-functions.R’ [1s/1s]
  Running ‘cX-ui-generated-test-setup.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘additional_examples.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cape’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/evd/libs/evd.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/evd/libs/evd.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘capm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘using_captioner.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘captr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
bootstrapCapwire: no visible global function definition for ‘quantile’
drawCapRatesBeta : <anonymous>: no visible global function definition
  for ‘rbeta’
drawCapRatesExp : <anonymous>: no visible global function definition
  for ‘rexp’
drawCapRatesGamma : <anonymous>: no visible global function definition
  for ‘rgamma’
drawCapRatesGeom : <anonymous>: no visible global function definition
  for ‘rgeom’
drawCapRatesUnif : <anonymous>: no visible global function definition
  for ‘runif’
partitionCountData : find.3.way.partitions: no visible global function
  definition for ‘dmultinom’
Undefined global functions or variables:
  dmultinom quantile rbeta rexp rgamma rgeom runif
Consider adding
  importFrom("stats", "dmultinom", "quantile", "rbeta", "rexp", "rgamma",
             "rgeom", "runif")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CARBayesdata’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘carbonate’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: boot
Loading required package: pastecs
Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lattice’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cardioModel’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Sub.pair: no visible global function definition for ‘qnorm’
as.record: no visible global function definition for ‘capture.output’
estN: no visible global function definition for ‘sd’
estN: no visible global function definition for ‘qnorm’
estN.bootstrap: no visible global function definition for ‘runif’
Undefined global functions or variables:
  capture.output qnorm runif sd
Consider adding
  importFrom("stats", "qnorm", "runif", "sd")
  importFrom("utils", "capture.output")
to your NAMESPACE file.
Running examples in ‘careless-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mahad
> ### Title: Find and graph Mahalanobis Distance (D) and flag potential
> ###   outliers.
> ### Aliases: mahad
> 
> ### ** Examples
> 
> mahad_raw <- mahad(careless_dataset) #only the distances themselves
Error: .onLoad failed in loadNamespace() for 'mnormt', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘careless-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘caretEnsemble’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘carfima’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DEoptim/libs/DEoptim.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DEoptim/libs/DEoptim.so: failed to map segment from shared object
Execution halted
abundance: no visible global function definition for ‘D’
Undefined global functions or variables:
  D
Consider adding
  importFrom("stats", "D")
to your NAMESPACE file.
Running examples in ‘CarletonStats-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: groupedBar
> ### Title: Grouped bar chart
> ### Aliases: groupedBar groupedBar.default groupedBar.formula
> ### Keywords: bar grouped plot
> 
> ### ** Examples
> 
> 
> 
> groupedBar(states03$Region)
Error in groupedBar.default(states03$Region) : 
  ggplot2 packaged needed for this function to work.
Calls: groupedBar -> groupedBar.default
Execution halted
barplotEQR: no visible global function definition for ‘barplot’
barplotEQR: no visible global function definition for ‘abline’
barplotEQR: no visible global function definition for ‘par’
barplotEQR: no visible global function definition for ‘text’
Undefined global functions or variables:
  abline barplot par text
Consider adding
  importFrom("graphics", "abline", "barplot", "par", "text")
to your NAMESPACE file.
'library' or 'require' calls in package code:
  ‘MASS’ ‘RSQLite’ ‘grid’ ‘sm’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Running examples in ‘caroline-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bestBy
> ### Title: Find the "best" record within subgroups of a dataframe.
> ### Aliases: bestBy
> 
> ### ** Examples
> 
> 
> blast.results <- data.frame(score=c(1,2,34,4,5,3,23), 
+                             query=c('z','x','y','z','x','y','z'), 
+                             target=c('a','b','c','d','e','f','g')
+                             )
> best.hits.R <- bestBy(blast.results, by='query', best='score', inverse=TRUE)
> best.hits.R
  score query target
y    34     y      c
z    23     z      g
x     5     x      e
> ## or using SQLite
> best.hits.sql <- bestBy(blast.results, by='query', best='score', inverse=TRUE, sql=TRUE)
Loading required package: RSQLite
Error: package or namespace load failed for ‘RSQLite’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error in dbConnect(dbDriver("SQLite"), dbname = tmpfile) : 
  could not find function "dbConnect"
Calls: bestBy
Execution halted
Running examples in ‘carpenter-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: carpenter
> ### Title: Build common tables for your research needs!
> ### Aliases: carpenter
> 
> ### ** Examples
> 
> 
> library(magrittr)
> outline_table(iris, 'Species') %>%
+  add_rows(c('Sepal.Length', 'Petal.Length'), stat_meanSD) %>%
+  add_rows('Sepal.Width', stat_medianIQR) %>%
+  renaming('rows', function(x) gsub('Sepal\\.', 'Sepal ', x)) %>%
+  renaming('header', c('Measures', 'Setosa', 'Versicolor', 'Virginica')) %>%
+  build_table(caption = 'A caption for the table')
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: %>% ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘carpenter.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CARrampsOcl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/OpenCL/libs/OpenCL.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/OpenCL/libs/OpenCL.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: carData
Error: package or namespace load failed for ‘car’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘carrier’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CARRoT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnet/libs/nnet.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnet/libs/nnet.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CARS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘carSurv’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cartogram’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cartography’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘cartools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: speedplot
> ### Title: A scatter plot of traffic data.
> ### Aliases: speedplot
> 
> ### ** Examples
> 
> speedplot(QUKtdayX)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: speedplot ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘cartools.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘carx-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: AIC.carx
> ### Title: Compute the AIC of a fitted 'carx' object
> ### Aliases: AIC.carx
> 
> ### ** Examples
> 
> dat = carxSim(nObs=100,seed=0)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Calls: carxSim ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CaseBasedReasoning’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘casebase’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CASMAP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CAST’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘catch’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘catcont’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘catdap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/catdap/libs/catdap.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/catdap/libs/catdap.so: failed to map segment from shared object
Execution halted
Package suggested but not available for checking: ‘lqa’
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CatDyn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Execution halted
Running examples in ‘catenary-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: catenary
> ### Title: Creates a catenary object
> ### Aliases: catenary catenary catenary-package
> 
> ### ** Examples
> 
> cat1 <- catenary()
> plot(cat1)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: plot ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘fit_cat.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CatEncoders’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cate’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
MDR.high.forward1: no visible global function definition for ‘combn’
MDR.sing.mod1: no visible global function definition for ‘combn’
MDR.sing.mod1: no visible global function definition for
  ‘complete.cases’
MDR.sing.mod1: no visible global function definition for ‘lm’
MDR.sing.mod1: no visible global function definition for ‘aov’
MDR.sing.mod1: no visible global function definition for ‘anova’
MDR.stage.forward1: no visible global function definition for ‘combn’
MDR.stage.forward1: no visible global function definition for
  ‘complete.cases’
MDR.stage.forward1: no visible global function definition for ‘lm’
MDR.stage.forward1: no visible global function definition for ‘resid’
MDR.stage.forward1: no visible global function definition for ‘pf’
MDR_forward1: no visible global function definition for
  ‘complete.cases’
MDR_forward1: no visible global function definition for ‘lm’
MDR_forward1: no visible global function definition for ‘aov’
low.anova: no visible global function definition for ‘complete.cases’
low.anova: no visible global function definition for ‘lm’
sing.mod1: no visible global function definition for ‘combn’
sing.mod1: no visible global function definition for ‘complete.cases’
sing.mod1: no visible global function definition for ‘lm’
sing.mod1: no visible global function definition for ‘pf’
Undefined global functions or variables:
  anova aov combn complete.cases lm pf resid
Consider adding
  importFrom("stats", "anova", "aov", "complete.cases", "lm", "pf",
             "resid")
  importFrom("utils", "combn")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: numDeriv
Error: package or namespace load failed for ‘catIrt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/catIrt/libs/catIrt.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/catIrt/libs/catIrt.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CATkit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘catlearn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘catnet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/catnet/libs/catnet.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/catnet/libs/catnet.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘caTools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CatPredi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cat’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cat/libs/cat.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cat/libs/cat.so: failed to map segment from shared object
Execution halted
ctab: no visible global function definition for ‘xtabs’
mob.eqmain: no visible global function definition for ‘model.matrix’
mob.qi: no visible global function definition for ‘C’
mob.qi: no visible binding for global variable ‘contr.treatment’
mob.rc1: no visible global function definition for ‘C’
mob.rc1: no visible binding for global variable ‘contr.treatment’
mob.rc1: no visible global function definition for ‘model.matrix’
mob.symint: no visible global function definition for ‘model.matrix’
print.ctab: no visible global function definition for ‘ftable’
Undefined global functions or variables:
  C contr.treatment ftable model.matrix xtabs
Consider adding
  importFrom("stats", "C", "contr.treatment", "ftable", "model.matrix",
             "xtabs")
to your NAMESPACE file.
Rd file 'ctab.Rd':
  \usage lines wider than 90 characters:
     ctab(...,dec.places=NULL,digits=NULL,type=NULL,style=NULL,row.vars=NULL,col.vars=NULL,percentages=NULL,addmargins=NULL)

Rd file 'sqtab.Rd':
  \examples lines wider than 100 characters:
     OccFather<-gl(5,5,labels=c("Upper nonmanual","Lower nonmanual","Upper manual","Lower manual","Farm"))
     glm.q0<-glm(Freq~OccFather+OccSon+mob.qi(OccFather,OccSon,constrained=TRUE),family=poisson(),data=FHtab)
     glm.hrc1<-glm(Freq~OccFather+OccSon+mob.rc1(OccFather,OccSon,equal=TRUE),family=poisson(),data=FHtab)
     m2 <- mlogit(occupation ~ mob.qi(focc,alt)+mob.unif(focc,alt) | education+race,data=pc, reflevel = "farm")

These lines will be truncated in the PDF manual.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ltm
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Running examples in ‘cattonum-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: catto_dummy
> ### Title: Dummy encoding
> ### Aliases: catto_dummy
> 
> ### ** Examples
> 
> catto_dummy(iris)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: catto_dummy ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘causaldrf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘causaleffect’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CausalFX’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rcdd/libs/rcdd.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rcdd/libs/rcdd.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: gam
Loading required package: splines
Loading required package: foreach
Error: package or namespace load failed for ‘gam’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gam/libs/gam.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gam/libs/gam.so: failed to map segment from shared object
Error: package ‘gam’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: bsts
Loading required package: BoomSpikeSlab
Loading required package: Boom
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘causalsens.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Non-standard file/directory found at top level:
  ‘integration_tests’
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Causata’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: grid
Loading required package: proxy
Error: package or namespace load failed for ‘proxy’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/proxy/libs/proxy.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/proxy/libs/proxy.so: failed to map segment from shared object
Error: package ‘proxy’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cbar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CBDA’:
 .onLoad failed in loadNamespace() for ‘nnls’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnls/libs/nnls.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnls/libs/nnls.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cbinom’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cbird’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cbird/libs/cbird.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cbird/libs/cbird.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cbsodataR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ccafs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rappdirs/libs/rappdirs.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rappdirs/libs/rappdirs.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Loading required package: pcaPP
Error: package or namespace load failed for ‘pcaPP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘pcaPP’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cccp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ccdrAlgorithm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ccfa’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ccgarch’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ccgarch/libs/ccgarch.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ccgarch/libs/ccgarch.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cclust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cclust/libs/cclust.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cclust/libs/cclust.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ccmm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  ./MCMC_prob.h:2091:41: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CCMnet.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: sna
Loading required package: statnet.common
Error: package or namespace load failed for ‘statnet.common’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘statnet.common’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: nloptr
Error: package or namespace load failed for ‘nloptr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nloptr/libs/nloptr.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nloptr/libs/nloptr.so: failed to map segment from shared object
Error: package ‘nloptr’ could not be loaded
Execution halted
p.Roy: no visible global function definition for ‘pf’
p.asym: no visible global function definition for ‘pf’
p.perm: no visible global function definition for ‘cancor’
plt.asym: no visible global function definition for ‘qf’
plt.asym: no visible global function definition for ‘plot’
plt.asym: no visible global function definition for ‘df’
plt.asym: no visible global function definition for ‘abline’
plt.perm: no visible global function definition for ‘hist’
plt.perm: no visible global function definition for ‘mtext’
plt.perm: no visible global function definition for ‘abline’
Undefined global functions or variables:
  abline cancor df hist mtext pf plot qf
Consider adding
  importFrom("graphics", "abline", "hist", "mtext", "plot")
  importFrom("stats", "cancor", "df", "pf", "qf")
to your NAMESPACE file.
Rd file 'p.perm.Rd':
  \examples lines wider than 100 characters:
     ## Run permutation test using Wilks Lambda (default) as test statistic; include different numbers of canonical correlations:

Rd file 'plt.asym.Rd':
  \examples lines wider than 100 characters:
     ## Plot the F-approximation for the Hotelling-Lawley Trace, considering 3, 2, or 1 canonical correlation(s):

Rd file 'plt.perm.Rd':
  \examples lines wider than 100 characters:
     # plot the permutation distribution of an F approximation for Wilks' Lambda, considering 3 and 2 canonical correlations:
     # plot the permutation distribution of an F approximation for the Pillai-Bartlett Trace, considering 3, 2, and 1 canonical correlation( ... [TRUNCATED]

These lines will be truncated in the PDF manual.
Error in re-building vignettes:
  ...
Error: processing vignette ‘ccRemover_tutorial.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cctools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘cdata.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cdcfluview’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cdcsis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/KernSmooth/libs/KernSmooth.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/KernSmooth/libs/KernSmooth.so: failed to map segment from shared object
Execution halted
Running examples in ‘CDECRetrieve-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cdec_rt
> ### Title: Get a rating table
> ### Aliases: cdec_rt
> 
> ### ** Examples
> 
> cdec_rt("abj") # get the stage to rating curve for ABJ
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: cdec_rt ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘CDECRetrieve.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cdfquantreg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
CDFt: no visible global function definition for ‘ecdf’
CDFt: no visible global function definition for ‘quantile’
CDFt: no visible global function definition for ‘approx’
KolmogorovSmirnov: no visible global function definition for ‘ecdf’
KolmogorovSmirnov: no visible global function definition for ‘approx’
Undefined global functions or variables:
  approx ecdf quantile
Consider adding
  importFrom("stats", "approx", "ecdf", "quantile")
to your NAMESPACE file.
prepare_Rd: CramerVonMisesTwoSamples.Rd:23: Dropping empty section \examples
prepare_Rd: KolmogorovSmirnov.Rd:26: Dropping empty section \examples
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CDLasso’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CDLasso/libs/CDLasso.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CDLasso/libs/CDLasso.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cdlTools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cdom’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Error: package or namespace load failed for ‘cds’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CDVineCopulaConditional’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CDVine’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cec2005benchmark’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cec2005benchmark/libs/cec2005benchmark.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cec2005benchmark/libs/cec2005benchmark.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cec2013’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cec2013/libs/cec2013.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cec2013/libs/cec2013.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CEC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CEC/libs/CEC.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CEC/libs/CEC.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CEGO’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DEoptim/libs/DEoptim.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DEoptim/libs/DEoptim.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ceg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/graph/libs/BioC_graph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/graph/libs/BioC_graph.so: failed to map segment from shared object
Execution halted
Running examples in ‘cellranger-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: as.cell_addr
> ### Title: Convert to a cell_addr object
> ### Aliases: as.cell_addr as.cell_addr.character as.cell_addr.ra_ref
> ###   as.cell_addr_v as.cell_addr_v.character as.cell_addr_v.list
> 
> ### ** Examples
> 
> as.cell_addr(ra_ref())
<cell_addr: 1 cells>
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘cell-references.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: minpack.lm
Error: package or namespace load failed for ‘minpack.lm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/minpack.lm/libs/minpack.lm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/minpack.lm/libs/minpack.lm.so: failed to map segment from shared object
Error: package ‘minpack.lm’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cellWise’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tcltk
Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lattice’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘censCov’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CensMixReg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘censNID’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/censNID/libs/censNID.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/censNID/libs/censNID.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: copula
Error: package or namespace load failed for ‘copula’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘copula’ could not be loaded
Execution halted
MomNIT: no visible global function definition for ‘dnorm’
MomNIT: no visible global function definition for ‘pnorm’
cdfNI: no visible global function definition for ‘pnorm’
cdfNI: no visible global function definition for ‘pt’
em.cens: no visible global function definition for ‘lm’
em.cens: no visible global function definition for ‘coefficients’
em.cens : ft: no visible global function definition for ‘dt’
em.cens : ft: no visible global function definition for ‘pt’
em.cens: no visible global function definition for ‘optimize’
em.cens: no visible global function definition for ‘dnorm’
em.cens: no visible global function definition for ‘pnorm’
em.cens: no visible global function definition for ‘sd’
Undefined global functions or variables:
  coefficients dnorm dt lm optimize pnorm pt sd
Consider adding
  importFrom("stats", "coefficients", "dnorm", "dt", "lm", "optimize",
             "pnorm", "pt", "sd")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: maxLik
Loading required package: miscTools
Error: package or namespace load failed for ‘maxLik’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘maxLik’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CensSpatial’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Census2016.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘censusapi-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: listCensusApis
> ### Title: Get dataset metadata on all available APIs as a data frame
> ### Aliases: listCensusApis
> ### Keywords: metadata
> 
> ### ** Examples
> 
> apis <- listCensusApis()
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Calls: listCensusApis ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘example-masterlist.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘censusGeography’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ggmap
Loading required package: ggplot2
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘ggplot2’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘censys’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cents’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cents/libs/cents.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cents/libs/cents.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CePa’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: astsa
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: trust
Error: package or namespace load failed for ‘cepp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rngWELL/libs/rngWELL.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rngWELL/libs/rngWELL.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cepR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CerioliOutlierDetection’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/robustbase/libs/robustbase.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/robustbase/libs/robustbase.so: failed to map segment from shared object
Execution halted
select_lambda: no visible global function definition for ‘median’
Undefined global functions or variables:
  median
Consider adding
  importFrom("stats", "median")
to your NAMESPACE file.
Error in re-building vignettes:
  ...
Error: processing vignette ‘cet_color_schemes.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CFC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
cf_estimate_quantiles: no visible global function definition for
  ‘qnorm’
Undefined global functions or variables:
  qnorm
Consider adding
  importFrom("stats", "qnorm")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rgdal
Loading required package: sp
Error: package or namespace load failed for ‘sp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘sp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: coneproj
Error: package or namespace load failed for ‘coneproj’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘coneproj’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cgAUC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running ‘runTests.R’ [0s/0s]
Running the tests in ‘tests/runTests.R’ failed.
Complete output:
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Rgb
Error: package or namespace load failed for ‘Rgb’:
 .onLoad failed in loadNamespace() for ‘Rgb’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rgb/libs/Rgb.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rgb/libs/Rgb.so: failed to map segment from shared object
Error: package ‘Rgb’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cgh’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cgh/libs/cgh.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cgh/libs/cgh.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cglm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘cgmanalysis-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cgmreport
> ### Title: Generate AGP
> ### Aliases: cgmreport
> 
> ### ** Examples
> 
> cgmreport(system.file("extdata","Cleaned",package = "cgmanalysis"))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Calls: cgmreport ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CGPfunctions’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cgraph’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cgraph/libs/cgraph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cgraph/libs/cgraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ChainLadder’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘chandwich-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘changepoint.mv’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  costfunctions.c:33:12: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  costfunctions.c:57:12: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/changepoint.np.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: changepoint
Loading required package: zoo
Error: package or namespace load failed for ‘zoo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘zoo’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘changepointsHD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘changer-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: changer
> ### Title: Change Name of Existing R Package
> ### Aliases: changer
> 
> ### ** Examples
> 
> content <- letters
> package.skeleton("package.with.boring.name", path = tempdir())
Creating directories ...
Creating DESCRIPTION ...
Creating NAMESPACE ...
Creating Read-and-delete-me ...
Saving functions and data ...
Making help files ...
Done.
Further steps are described in '/tmp/RtmpRVaMzQ/package.with.boring.name/Read-and-delete-me'.
> readLines(file.path(tempdir(), "package.with.boring.name", "DESCRIPTION"))
[1] "Package: package.with.boring.name"                              
[2] "Type: Package"                                                  
[3] "Title: What the package does (short line)"                      
[4] "Version: 1.0"                                                   
[5] "Date: 2018-12-16"                                               
[6] "Author: Who wrote it"                                           
[7] "Maintainer: Who to complain to <yourfault@somewhere.net>"       
[8] "Description: More about what it does (maybe more than one line)"
[9] "License: What license is it under?"                             
> 
> changer(file.path(tempdir(), "package.with.boring.name"), 
+   new_name = "superpack", check_validity = FALSE, ask = FALSE)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/git2r/libs/git2r.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/git2r/libs/git2r.so: failed to map segment from shared object
Calls: changer ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ChannelAttributionApp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ChannelAttribution’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Chaos01’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Chaos01/libs/Chaos01.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Chaos01/libs/Chaos01.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CharFun’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Bessel/libs/Bessel.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Bessel/libs/Bessel.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Error: package or namespace load failed for ‘ChargeTransport’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ChargeTransport/libs/ChargeTransport.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ChargeTransport/libs/ChargeTransport.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘charlatan’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘chebpol’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/chebpol/libs/chebpol.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/chebpol/libs/chebpol.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cheb’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cheb/libs/cheb.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cheb/libs/cheb.so: failed to map segment from shared object
Execution halted
Running ‘test-CheckDigit.R’ [0s/0s]
Running the tests in ‘tests/test-CheckDigit.R’ failed.
Complete output:
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘checkLuhn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘checkmate’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Execution halted
Running ‘test-all.R’ [0s/0s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(cli)
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘checkpoint.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘assertive-programming.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cheddar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cheddar/libs/cheddar.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cheddar/libs/cheddar.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘chemCal.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ChemometricsWithR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ChemoSpecUtils
Error: package or namespace load failed for ‘ChemoSpecUtils’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘ChemoSpecUtils’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ChemoSpecUtils’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cherry’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: gamlss.tr
Loading required package: gamlss.dist
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘access_childes_db.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘childhoodmortality-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: childhoodmortality
> ### Title: Calculates childhood mortality
> ### Aliases: childhoodmortality
> 
> ### ** Examples
> 
> data("model_ipums_dhs_dataset")
> underfive_mortality_rates <- childhoodmortality(
+  model_ipums_dhs_dataset,
+  grouping ="wealthq",
+  rate_type = "underfive"
+ )
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/matrixStats/libs/matrixStats.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/matrixStats/libs/matrixStats.so: failed to map segment from shared object
Calls: childhoodmortality ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘childhoodmortality.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘childsds’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘chillR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Kendall/libs/Kendall.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Kendall/libs/Kendall.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘chinese.misc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘chipPCR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ChIPtest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ChIPtest/libs/ChIPtest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ChIPtest/libs/ChIPtest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CHMM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mclust/libs/mclust.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mclust/libs/mclust.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘chngpt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/kyotil/libs/kyotil.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/kyotil/libs/kyotil.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CHNOSZ’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CHNOSZ/libs/CHNOSZ.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CHNOSZ/libs/CHNOSZ.so: failed to map segment from shared object
Execution halted
Running examples in ‘ChocoLattes-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: lattes_to_list
> ### Title: Convert a set of Lattes CV XML files to a list object
> ### Aliases: lattes_to_list
> 
> ### ** Examples
> 
> my.dir <- system.file("extdata", package="ChocoLattes")
> 
> # Define the aliases of authors "Felipe Campelo" and "Lucas S. Batista":
> # (all aliases will be converted to the first name provided for each author)
> my.aliases <- list(c("Felipe Campelo",
+                      "Felipe Campelo Franca Pinto",
+                      "Felipe Campelo F. Pinto",
+                      "F.C.F. Pinto"),
+                    c("Lucas S. Batista",
+                      "Lucas Batista",
+                      "Lucas de Souza Batista",
+                      "Lucas Souza Batista"))
> 
> lattes.list <- lattes_to_list(CV.dir         = my.dir,
+                               author.aliases = my.aliases)
Error: .onLoad failed in loadNamespace() for 'XML', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: AlgDesign
Error: package or namespace load failed for ‘AlgDesign’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/AlgDesign/libs/AlgDesign.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/AlgDesign/libs/AlgDesign.so: failed to map segment from shared object
Error: package ‘AlgDesign’ could not be loaded
Execution halted
File
  LICENSE
is not mentioned in the DESCRIPTION file.
choicemodelr : drawDelta: no visible global function definition for
  ‘rnorm’
choicemodelr : mnlRwMetropOnce: no visible global function definition
  for ‘rnorm’
choicemodelr : mnlRwMetropOnce: no visible global function definition
  for ‘runif’
choicemodelr : rmultireg: no visible global function definition for
  ‘rnorm’
choicemodelr : rwishart: no visible global function definition for
  ‘rchisq’
choicemodelr : rwishart: no visible global function definition for
  ‘rnorm’
choicemodelr : fsh: no visible global function definition for
  ‘flush.console’
choicemodelr: no visible global function definition for ‘matplot’
choicemodelr: no visible global function definition for ‘write.table’
Undefined global functions or variables:
  flush.console matplot rchisq rnorm runif write.table
Consider adding
  importFrom("graphics", "matplot")
  importFrom("stats", "rchisq", "rnorm", "runif")
  importFrom("utils", "flush.console", "write.table")
to your NAMESPACE file.
Rd file 'choicemodelr.Rd':
  \examples lines wider than 100 characters:
     estbetas = cbind(estbetas[,1:4],0-apply(estbetas[,1:4],1,sum),estbetas[,5:6],0-apply(estbetas[,5:6],1,sum))
     estbetas = cbind(estbetas[,1:4],0-apply(estbetas[,1:4],1,sum),estbetas[,5:6],0-apply(estbetas[,5:6],1,sum))

These lines will be truncated in the PDF manual.
Running examples in ‘cholera-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: addVoronoi
> ### Title: Add Voronoi cells.
> ### Aliases: addVoronoi
> 
> ### ** Examples
> 
> snowMap()
> addVoronoi()
Error: .onLoad failed in loadNamespace() for 'deldir', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deldir/libs/deldir.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deldir/libs/deldir.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘duplicate.missing.cases.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CholWishart’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CholWishart/libs/CholWishart.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CholWishart/libs/CholWishart.so: failed to map segment from shared object
Execution halted
Qh.times.dhyper: no visible global function definition for ‘var’
Qh.times.dhyper: no visible global function definition for ‘pnorm’
Qh.times.dhyper: no visible global function definition for ‘dhyper’
TDiM: no visible global function definition for ‘sd’
choplump.default: no visible global function definition for
  ‘flush.console’
choplump.formula: no visible global function definition for ‘terms’
cm.compact: no visible global function definition for ‘dhyper’
Undefined global functions or variables:
  dhyper flush.console pnorm sd terms var
Consider adding
  importFrom("stats", "dhyper", "pnorm", "sd", "terms", "var")
  importFrom("utils", "flush.console")
to your NAMESPACE file.
Error in re-building vignettes:
  ...
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object

Error: processing vignette ‘choplumpValidation.Rnw’ failed with diagnostics:
 chunk 6 
Error : package ‘survival’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘chopthin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘chords’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘choroplethrAdmin1’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: acs
Loading required package: stringr
Error: package or namespace load failed for ‘stringr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Error: package ‘stringr’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ChoR’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘chromer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘chromoMap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: haarfisz
Loading required package: wavethresh
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘chron’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/chron/libs/chron.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/chron/libs/chron.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: scatterplot3d
Loading required package: KernSmooth
Error: package or namespace load failed for ‘KernSmooth’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/KernSmooth/libs/KernSmooth.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/KernSmooth/libs/KernSmooth.so: failed to map segment from shared object
Error: package ‘KernSmooth’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘chunkR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CIAAWconsensus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Running examples in ‘CIEE-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bootstrap_se
> ### Title: Bootstrap standard error estimates
> ### Aliases: bootstrap_se
> 
> ### ** Examples
> 
> 
> dat <- generate_data(setting = "GLM", n = 100)
> 
> # For illustration use here only 100 bootstrap samples, recommended is using 1000
> bootstrap_se(setting = "GLM", BS_rep = 100, Y = dat$Y, X = dat$X,
+              K = dat$K, L = dat$L)
Error: Pkg needed for this function to work. Please install it.
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘ciee.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CIFsmry’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CIFsmry/libs/CIFsmry.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CIFsmry/libs/CIFsmry.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cifti’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CINNA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/leaps/libs/leaps.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/leaps/libs/leaps.so: failed to map segment from shared object
Execution halted
cin: no visible global function definition for ‘pnorm’
gammaHRF: no visible global function definition for ‘dgamma’
intertest: no visible global function definition for ‘pnorm’
truncSum: no visible global function definition for ‘spline’
Undefined global functions or variables:
  dgamma pnorm spline
Consider adding
  importFrom("stats", "dgamma", "pnorm", "spline")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CIplot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘circglmbayes’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘circlize’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/colorspace/libs/colorspace.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/colorspace/libs/colorspace.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CircMLE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: CircStats
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CircularDDM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘circular’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘circumplex’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cIRT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CISE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: agop
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
cit.assignBcmst: no visible binding for global variable ‘citbcmst’
cit.assignBcmst : <anonymous>: no visible global function definition
  for ‘median’
cit.assignBcmst: no visible global function definition for ‘prcomp’
cit.assignBcmst: no visible global function definition for ‘par’
cit.assignBcmst: no visible global function definition for ‘lines’
cit.assignBcmst: no visible global function definition for ‘legend’
cit.centroids : <anonymous>: no visible global function definition for
  ‘median’
cit.centroids : <anonymous>: no visible global function definition for
  ‘var’
cit.dist: no visible global function definition for ‘dist’
cit.dist: no visible global function definition for ‘as.dist’
cit.dist: no visible global function definition for ‘cor’
cit.distToCentroids: no visible global function definition for
  ‘quantile’
cit.distToCentroids : <anonymous>: no visible global function
  definition for ‘median’
cit.distToCentroids : <anonymous>: no visible global function
  definition for ‘mad’
Undefined global functions or variables:
  as.dist citbcmst cor dist legend lines mad median par prcomp quantile
  var
Consider adding
  importFrom("graphics", "legend", "lines", "par")
  importFrom("stats", "as.dist", "cor", "dist", "mad", "median",
             "prcomp", "quantile", "var")
to your NAMESPACE file.
cit.assignCcmst: no visible binding for global variable ‘citccmst’
cit.assignCcmst : <anonymous>: no visible global function definition
  for ‘median’
cit.assignCcmst : median.na: no visible global function definition for
  ‘median’
cit.assignCcmst: no visible global function definition for ‘prcomp’
cit.assignCcmst: no visible global function definition for ‘par’
cit.assignCcmst: no visible global function definition for ‘lines’
cit.assignCcmst: no visible global function definition for ‘legend’
cit.centroids : <anonymous>: no visible global function definition for
  ‘median’
cit.centroids : <anonymous>: no visible global function definition for
  ‘var’
cit.dist: no visible global function definition for ‘dist’
cit.dist: no visible global function definition for ‘as.dist’
cit.dist: no visible global function definition for ‘cor’
cit.distToCentroids: no visible global function definition for
  ‘quantile’
cit.distToCentroids : <anonymous>: no visible global function
  definition for ‘median’
cit.distToCentroids : <anonymous>: no visible global function
  definition for ‘mad’
Undefined global functions or variables:
  as.dist citccmst cor dist legend lines mad median par prcomp quantile
  var
Consider adding
  importFrom("graphics", "legend", "lines", "par")
  importFrom("stats", "as.dist", "cor", "dist", "mad", "median",
             "prcomp", "quantile", "var")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Cite’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ciTools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cit/libs/cit.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cit/libs/cit.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘citr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
CityPlot: no visible global function definition for ‘read.table’
CityPlot: no visible global function definition for ‘tail’
CityPlot: no visible global function definition for ‘pdf’
CityPlot: no visible global function definition for ‘split.screen’
CityPlot: no visible global function definition for ‘screen’
CityPlot: no visible global function definition for ‘par’
CityPlot: no visible global function definition for ‘plot’
CityPlot: no visible global function definition for ‘rect’
CityPlot: no visible global function definition for ‘text’
CityPlot: no visible global function definition for ‘lines’
CityPlot: no visible global function definition for ‘dev.off’
Undefined global functions or variables:
  dev.off lines par pdf plot read.table rect screen split.screen tail
  text
Consider adding
  importFrom("grDevices", "dev.off", "pdf")
  importFrom("graphics", "lines", "par", "plot", "rect", "screen",
             "split.screen", "text")
  importFrom("utils", "read.table", "tail")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CityWaterBalance’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Running examples in ‘ciuupi-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cpciuupi
> ### Title: Compute the coverage probability of the CIUUPI
> ### Aliases: cpciuupi
> 
> ### ** Examples
> 
> alpha <- 0.05
> 
> # Find the vector (b(1),b(2),...,b(5),s(0),s(1),...,s(5)) that specifies the
> # CIUUPI: (this may take a few minutes to run)
> 
> # The result (to 7 decimal places) is
> bsvec <- c(0.129443483, 0.218926703, 0.125880945, 0.024672734, -0.001427343,
+            1.792489585, 1.893870240, 2.081786492, 2.080407355,  1.986667246,
+            1.958594824)
> 
> # Graph the coverage probability function
> gam <- seq(0, 10, by = 0.1)
> cp <- cpciuupi(gam, bsvec, alpha, rho = 0.4)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/statmod/libs/statmod.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/statmod/libs/statmod.so: failed to map segment from shared object
Calls: cpciuupi ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘desciption-ciuupi.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘civis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘cjamp.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: sandwich
Error: package or namespace load failed for ‘sandwich’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘sandwich’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ck37r’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RANN/libs/RANN.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RANN/libs/RANN.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ckanr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CKLRT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Ckmeans.1d.dp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cladoRcpp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clampSeg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clarifai’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: oompaBase
Error: package or namespace load failed for ‘oompaBase’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Error: package ‘oompaBase’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘classGraph’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/graph/libs/BioC_graph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/graph/libs/BioC_graph.so: failed to map segment from shared object
Execution halted
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RGtk2/libs/RGtk2.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RGtk2/libs/RGtk2.so: failed to map segment from shared object
'library' or 'require' call to ‘rggobi’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
generate_data : <anonymous>: no visible global function definition for
  ‘runif’
knnf: no visible global function definition for ‘terms’
rescaler.default: no visible global function definition for ‘sd’
rescaler.default: no visible global function definition for ‘median’
rescaler.default: no visible global function definition for ‘mad’
simvar.numeric: no visible global function definition for ‘runif’
Undefined global functions or variables:
  mad median runif sd terms
Consider adding
  importFrom("stats", "mad", "median", "runif", "sd", "terms")
to your NAMESPACE file.
Running examples in ‘classifly-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: classifly
> ### Title: Classifly provides a convenient method to fit a classification
> ###   function and then explore the results in the original high
> ###   dimensional space.
> ### Aliases: classifly package-classifly
> ### Keywords: dynamic
> 
> ### ** Examples
> 
> data(kyphosis, package = "rpart")
> library(MASS)
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘classiFunc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘classify’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: spData
To access larger datasets in this package, install the spDataLarge
package with: `install.packages('spDataLarge',
repos='https://nowosad.github.io/drat/', type='source')`
Error: package or namespace load failed for ‘classInt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/class/libs/class.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/class/libs/class.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘class’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/class/libs/class.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/class/libs/class.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: snowfall
Loading required package: snow
Loading required package: e1071
Error: package or namespace load failed for ‘e1071’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/class/libs/class.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/class/libs/class.so: failed to map segment from shared object
Error: package ‘e1071’ could not be loaded
Execution halted
Running examples in ‘classyfireR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: entity_classification
> ### Title: Entity Classification
> ### Aliases: entity_classification
> 
> ### ** Examples
> 
> 
> # Valid InChI key where all four classification levels are available
> entity_classification('BRMWTNUJHUMWMS-LURJTMIESA-N')
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Calls: entity_classification ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cld2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cld3’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Biostrings
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
    rownames, sapply, setdiff, sort, table, tapply, union, unique,
    unsplit, which, which.max, which.min

Loading required package: S4Vectors
Loading required package: stats4
Error: package or namespace load failed for ‘S4Vectors’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/S4Vectors/libs/S4Vectors.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/S4Vectors/libs/S4Vectors.so: failed to map segment from shared object
Error: package ‘S4Vectors’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cleanEHR’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rgeos
Error: package or namespace load failed for ‘rgeos’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘rgeos’ could not be loaded
Execution halted
Running examples in ‘cleanNLP-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cnlp_get_dependency
> ### Title: Access dependencies from an annotation object
> ### Aliases: cnlp_get_dependency
> 
> ### ** Examples
> 
> data(obama)
> 
> # find the most common noun lemmas that are the syntactic subject of a
> # clause
> require(dplyr)
Loading required package: dplyr
Error: package or namespace load failed for ‘dplyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
> res <- cnlp_get_dependency(obama, get_token = TRUE) %>%
+   filter(relation == "nsubj")
Error in cnlp_get_dependency(obama, get_token = TRUE) %>% filter(relation ==  : 
  could not find function "%>%"
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘case_study.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cleanr’:
 .onLoad failed in loadNamespace() for ‘cleanr’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Loading required package: lasso2
Error: package or namespace load failed for ‘lasso2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lasso2/libs/lasso2.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lasso2/libs/lasso2.so: failed to map segment from shared object
Error: package ‘lasso2’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clespr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/pbivnorm/libs/pbivnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/pbivnorm/libs/pbivnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clhs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ClickClust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ClickClust/libs/ClickClust.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ClickClust/libs/ClickClust.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clifro’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: CNLTreg
Loading required package: adlift
Loading required package: EbayesThresh
Error: package or namespace load failed for ‘EbayesThresh’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘EbayesThresh’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clikcorr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: maps
Error: package or namespace load failed for ‘maps’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/maps/libs/maps.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/maps/libs/maps.so: failed to map segment from shared object
Error: package ‘maps’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘climbeR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ClimClass’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: PCICt
Error: package or namespace load failed for ‘PCICt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/PCICt/libs/PCICt.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/PCICt/libs/PCICt.so: failed to map segment from shared object
Error: package ‘PCICt’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ClimDown’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/PCICt/libs/PCICt.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/PCICt/libs/PCICt.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘climextRemes’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ClimProjDiags’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/PCICt/libs/PCICt.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/PCICt/libs/PCICt.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rstan
Loading required package: ggplot2
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘ggplot2’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clinfun’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ClinicalTrialSummary’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
gxe.cc: no visible global function definition for ‘qnorm’
gxe.coh: no visible global function definition for ‘qnorm’
utility.cc: no visible global function definition for ‘qnorm’
utility.coh: no visible global function definition for ‘qnorm’
Undefined global functions or variables:
  qnorm
Consider adding
  importFrom("stats", "qnorm")
to your NAMESPACE file.
Found the following significant warnings:
  ./networkCliqueMSR.h:405:22: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  ./networkCliqueMSR.h:414:17: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/cliqueMS.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cliqueMS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clogitboost’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clogitLasso’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lassoshooting/libs/lassoshooting.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lassoshooting/libs/lassoshooting.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clordr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tfruns
Error: package or namespace load failed for ‘tfruns’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Error: package ‘tfruns’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clpAPI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/clpAPI/libs/clpAPI.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/clpAPI/libs/clpAPI.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clubSandwich’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clue’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clues’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/clues/libs/clues.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/clues/libs/clues.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clusrank’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: qrcm
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘survival’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clusterCrit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/clusterCrit/libs/clusterCrit.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/clusterCrit/libs/clusterCrit.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘estimate-policyFX.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: seriation
Error: package or namespace load failed for ‘seriation’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TSP/libs/TSP.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TSP/libs/TSP.so: failed to map segment from shared object
Error: package ‘seriation’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rggobi
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RGtk2/libs/RGtk2.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RGtk2/libs/RGtk2.so: failed to map segment from shared object
Error: package or namespace load failed for ‘rggobi’:
 .onLoad failed in loadNamespace() for ‘RGtk2’, details:
  call: install_all()
  error: This platform is not yet supported by the automatic installer. Please install GTK+ manually, if necessary. See: http://www.gtk.org
Error: package ‘rggobi’ could not be loaded
In addition: Warning message:
Failed to load RGtk2 dynamic library, attempting to install it. 
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘clusterhap_vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clustering.sc.dp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/clustering.sc.dp/libs/clustering.sc.dp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/clustering.sc.dp/libs/clustering.sc.dp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clusterlab’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Warning: namespace ‘purrr’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘purrr’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Warning: namespace ‘purrr’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘purrr’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘clustermq.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clusternomics’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Cluster.OBeu’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cluster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: AER
Loading required package: car
Loading required package: carData
Error: package or namespace load failed for ‘car’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Error: package ‘car’ could not be loaded
Execution halted
hopkins: no visible global function definition for ‘runif’
hopkins: no visible global function definition for ‘dist’
Undefined global functions or variables:
  dist runif
Consider adding
  importFrom("stats", "dist", "runif")
to your NAMESPACE file.
License components which are templates and need '+ file LICENSE':
  MIT
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clusteval’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ClustGeo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘clustMD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘clustRcompaR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cluster
> ### Title: Cluster wrapper function
> ### Aliases: cluster
> 
> ### ** Examples
> 
> library(clustRcompaR)
> library(dplyr)
Error: package or namespace load failed for ‘dplyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘introduction-to-clustRcompaR.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ggraph
Loading required package: ggplot2
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘ggplot2’ could not be loaded
Execution halted
braycurtis: no visible global function definition for ‘as.dist’
czekanowski: no visible global function definition for ‘as.dist’
findComplementaryIndices: no visible global function definition for
  ‘na.omit’
genSimilarityProfile: no visible global function definition for ‘dist’
simprof: no visible global function definition for ‘dist’
simprof: no visible global function definition for ‘hclust’
simprof.plot : <local> : colorizer: no visible global function
  definition for ‘is.leaf’
simprof.plot: no visible global function definition for ‘rainbow’
simprof.plot: no visible global function definition for ‘dendrapply’
simprof.plot: no visible global function definition for ‘as.dendrogram’
Undefined global functions or variables:
  as.dendrogram as.dist dendrapply dist hclust is.leaf na.omit rainbow
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("stats", "as.dendrogram", "as.dist", "dendrapply", "dist",
             "hclust", "is.leaf", "na.omit")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ClustVarLV’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ClusVis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
cma_es: no visible global function definition for ‘rnorm’
f_rand: no visible global function definition for ‘runif’
Undefined global functions or variables:
  rnorm runif
Consider adding
  importFrom("stats", "rnorm", "runif")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ParamHelpers
Error: package or namespace load failed for ‘ParamHelpers’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Error: package ‘ParamHelpers’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Matching
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
alpha.cronbach: no visible global function definition for ‘cov’
alpha.curve: no visible global function definition for ‘plot’
alpha.curve: no visible global function definition for ‘text’
Undefined global functions or variables:
  cov plot text
Consider adding
  importFrom("graphics", "plot", "text")
  importFrom("stats", "cov")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CMF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: compoisson
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cmpprocess’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cmprskQR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: chron
Error: package or namespace load failed for ‘chron’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/chron/libs/chron.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/chron/libs/chron.so: failed to map segment from shared object
Error: package ‘chron’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ncdf4
Error: package or namespace load failed for ‘ncdf4’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ncdf4/libs/ncdf4.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ncdf4/libs/ncdf4.so: failed to map segment from shared object
Error: package ‘ncdf4’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cna’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘cnbdistr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: dcnb
> ### Title: PMF of Conditional Negative Binomial
> ### Aliases: dcnb
> 
> ### ** Examples
> 
> dcnb(980, 2000, 120, 90, 0.994)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Calls: dcnb ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cncaGUI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: adlift
Loading required package: EbayesThresh
Error: package or namespace load failed for ‘EbayesThresh’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘EbayesThresh’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: lsei
Error: package or namespace load failed for ‘lsei’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lsei/libs/lsei.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lsei/libs/lsei.so: failed to map segment from shared object
Error: package ‘lsei’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: seqinr
Error: package or namespace load failed for ‘seqinr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘seqinr’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cNORM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Loading required package: mclust
Error: package or namespace load failed for ‘mclust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mclust/libs/mclust.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mclust/libs/mclust.so: failed to map segment from shared object
Error: package ‘mclust’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CNull’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in .requirePackage(package) : 
    unable to find required package 'CGHbase'
  Calls: <Anonymous> ... .extendsForS3 -> extends -> getClassDef -> .requirePackage
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘coala’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘coalitions’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘coarseDataTools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cobalt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cobiclust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘COBRA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/COBRA/libs/COBRA.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/COBRA/libs/COBRA.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cobs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseM/libs/SparseM.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseM/libs/SparseM.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cocoreg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Package which this enhances but not available for checking: ‘rkward’
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # the tests are realized using the "testthat" package
  > # and can be found in testthat/test.r
  > 
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Running ‘test.cocron.package.R’ [0s/0s]
Running the tests in ‘tests/test.cocron.package.R’ failed.
Complete output:
  > # the tests are realized using the "testthat" package
  > # and can be found in ../inst/tests
  > 
  > require(testthat)
  Loading required package: testthat
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  > test_package("cocron")
  Error in test_package("cocron") : could not find function "test_package"
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘coda.base’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘coda’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘codebook’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CodeDepends’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/graph/libs/BioC_graph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/graph/libs/BioC_graph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘codemetar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/git2r/libs/git2r.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/git2r/libs/git2r.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Error: package or namespace load failed for ‘codep’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/codep/libs/codep.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/codep/libs/codep.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cOde’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘codified’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CoDiNA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘codingMatrices’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘codyn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rsem
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Running ‘test-all.R’ [0s/0s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > ## Test `coenocliner` using the `testthat` package
  > 
  > ## Setup
  > library("testthat")
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘coenocliner.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Rd file 'fast.flexsim.Rd':
  \usage lines wider than 90 characters:
     fast.flexsim(scale = 2, island,dispersalscale = 51, allee = 1, T = 1000, initp,parcombination, spnum = 2, sourcetype = "constant", type ... [TRUNCATED]

Rd file 'flexsim.Rd':
  \usage lines wider than 90 characters:
     flexsim(scale = 2, dispersalscale = 51, allee = 1, T = 1000, prange, initp,spnum = 2, island=10, sourcetype = "constant", type, path =  ... [TRUNCATED]

Rd file 'make.heatmap.Rd':
  \usage lines wider than 90 characters:
     make.heatmap(mat, type = "gray", xname = "x", yname = "y", xlab = NULL, ylab = NULL, title = NULL)

Rd file 'sim.coarse.Rd':
  \usage lines wider than 90 characters:
     sim.coarse(island=10,scale = 2, dispersalscale = 51, allee = 1, T = 1000, prange, type, initp, path = NULL)

These lines will be truncated in the PDF manual.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CoFRA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘coga’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘coindeskr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘coinmarketcapr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: cointReg
Error: package or namespace load failed for ‘cointReg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Error: package ‘cointReg’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cointReg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: nlsr
Error: package or namespace load failed for ‘nlsr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘nlsr’ could not be loaded
Execution halted
Running examples in ‘CollapseLevels-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: IVCalc
> ### Title: IVCalc
> ### Aliases: IVCalc
> 
> ### ** Examples
> 
> 
> # Load the German_Credit data set supplied with this package
> 
> data("German_Credit")
> 
> l<-list()
> 
> # Call the function as follows
> 
> l<-IVCalc(German_Credit,resp="Good_Bad",bins=10)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: IVCalc ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘CollapseLevels.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘collapsibleTree’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘collateral’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘collectArgs_and_iterateWithArgs.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘collections’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/collections/libs/collections.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/collections/libs/collections.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CollessLike’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘colocalization’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘coloc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘colordistance-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: colorDistance
> ### Title: Sum of Euclidean distances between color clusters
> ### Aliases: colorDistance
> 
> ### ** Examples
> 
> cluster.list <- colordistance::getHistList(system.file("extdata",
+ "Heliconius/Heliconius_B", package="colordistance"), lower=rep(0.8, 3),
+ upper=rep(1, 3))
Warning in colordistance::getHistList(system.file("extdata", "Heliconius/Heliconius_B",  :
  RGB and HSV are device-dependent, perceptually non-uniform color spaces. See 'Color spaces' vignette for more information.

Using 3^3 = 27 total bins

  |                                                                            
  |                                                                      |   0%Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jpeg/libs/jpeg.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jpeg/libs/jpeg.so: failed to map segment from shared object
Calls: <Anonymous> ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘binning-methods.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘colorednoise’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘colorfindr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Package in Depends field not imported from: ‘grid’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
plotVenn2d : twoWayOverlap: no visible global function definition for
  ‘grid.polygon’
plotVenn2d : twoWayOverlap: no visible global function definition for
  ‘gpar’
plotVenn2d: no visible global function definition for ‘grid.text’
plotVenn2d: no visible global function definition for ‘gpar’
plotVenn2d: no visible global function definition for ‘grid.polygon’
plotVenn3d : twoWayOverlap: no visible global function definition for
  ‘grid.polygon’
plotVenn3d : twoWayOverlap: no visible global function definition for
  ‘gpar’
plotVenn3d: no visible global function definition for ‘grid.text’
plotVenn3d: no visible global function definition for ‘gpar’
plotVenn3d: no visible global function definition for ‘grid.polygon’
plotVenn4d : getCommonEllipse: no visible global function definition
  for ‘aggregate’
plotVenn4d : region.polygon: no visible global function definition for
  ‘head’
plotVenn4d : region.polygon: no visible global function definition for
  ‘grid.polygon’
plotVenn4d : region.polygon: no visible global function definition for
  ‘gpar’
plotVenn4d: no visible global function definition for ‘grid.text’
plotVenn4d: no visible global function definition for ‘gpar’
plotVenn4d: no visible global function definition for ‘pushViewport’
plotVenn4d: no visible global function definition for ‘viewport’
plotVenn4d: no visible global function definition for ‘grid.polygon’
plotVenn4d: no visible global function definition for ‘upViewport’
resizeCircles: no visible global function definition for ‘uniroot’
Undefined global functions or variables:
  aggregate gpar grid.polygon grid.text head pushViewport uniroot
  upViewport viewport
Consider adding
  importFrom("stats", "aggregate", "uniroot")
  importFrom("utils", "head")
to your NAMESPACE file.
Error in re-building vignettes:
  ...
Error: processing vignette ‘colorhcplot_getStarted.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘colormap’:
 .onLoad failed in loadNamespace() for ‘colormap’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
generateMonochromaticColors: no visible global function definition for
  ‘col2rgb’
generateMonochromaticColors: no visible global function definition for
  ‘rgb’
generateMonochromaticColors: no visible global function definition for
  ‘tail’
hsv2rgb: no visible global function definition for ‘rgb’
rotational_dispersion: no visible global function definition for
  ‘col2rgb’
rotational_dispersion: no visible global function definition for
  ‘rgb2hsv’
tetradicColors: no visible global function definition for ‘head’
triadicColors: no visible global function definition for ‘head’
Undefined global functions or variables:
  col2rgb head rgb rgb2hsv tail
Consider adding
  importFrom("grDevices", "col2rgb", "rgb", "rgb2hsv")
  importFrom("utils", "head", "tail")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘colorpatch’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/colorspace/libs/colorspace.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/colorspace/libs/colorspace.so: failed to map segment from shared object
Execution halted
primary.colors: no visible global function definition for ‘rgb’
rgb.tables: no visible global function definition for ‘rgb’
ygobb: no visible global function definition for ‘approx’
ygobb: no visible global function definition for ‘rgb’
Undefined global functions or variables:
  approx rgb
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("stats", "approx")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘colorspace’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/colorspace/libs/colorspace.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/colorspace/libs/colorspace.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘colorSpec’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘colourlovers’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/png/libs/png.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/png/libs/png.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘colourpicker’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘colourvalues’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘colourvision’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘colr.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘comato’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: hash
hash-2.2.6 provided by Decision Patterns

Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lattice’ could not be loaded
Execution halted
competitive.test: no visible global function definition for ‘runif’
selfcontained.test : fun2: no visible global function definition for
  ‘qchisq’
selfcontained.test: no visible global function definition for ‘cov’
selfcontained.test: no visible global function definition for ‘qchisq’
selfcontained.test: no visible global function definition for ‘cor’
selfcontained.test: no visible global function definition for ‘pchisq’
Undefined global functions or variables:
  cor cov pchisq qchisq runif
Consider adding
  importFrom("stats", "cor", "cov", "pchisq", "qchisq", "runif")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘combiter’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
'library' or 'require' calls in package code:
  ‘lattice’ ‘rgl’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Found the following apparent S3 methods exported but not registered:
  AIC.fmo Adj.Rsq.fmo Adj.Rsq.lm BIC.fmo Cp.fmo Cp.lm PRESS.fmo
  PRESS.lm fit.Models.glmFormula fit.Models.lmFormula fit.Models.tsm
  gen.Data.glmFormula gen.Data.lmFormula gen.Data.tsm
  gen.Params.lmFormula gen.Params.tsm holdout.Mean.Arima
  holdout.Mean.default holdout.Mean.fmo holdout.Mean.lm
  holdout.Med.Arima holdout.Med.default holdout.Med.fmo holdout.Med.lm
  holdout.SS.Arima holdout.SS.default holdout.SS.fmo holdout.SS.lm
  num.Terms.formula num.Terms.tsm plot.msc print.msc print.summary.msc
  print.tsm summary.msc
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Rd file 'TMC.Rd':
  \usage lines wider than 90 characters:
     TMC(num.Iter = 50, data.Size = 100, make.Data = gen.Data, make.Params = gen.Params, model.List, weight.Vector = rep(1, times = length(m ... [TRUNCATED]
  \examples lines wider than 100 characters:
     result <- TMC(num.Iter = 3, model.List = make.Model.List.Reg(vars), msc.List = list(BIC, AIC, PRESS), var.Frame = vars)

Rd file 'make.Model.List.Reg.Rd':
  \usage lines wider than 90 characters:
     make.Model.List.Reg(fram, max.Size = min(8, dim(fram)[2]), no.Intercepts = FALSE, GLM = FALSE)

Rd file 'sarima.Sim.Rd':
  \usage lines wider than 90 characters:
     sarima.Sim(n = 20, period = 12, model, seasonal, rand.Gen.Fun = rnorm, rand.Gen.Seas = rnorm)

These lines will be truncated in the PDF manual.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cometExactTest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘comf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘ComICS-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: dcq
> ### Title: DCQ - Digital Cell Quantifier
> ### Aliases: dcq
> 
> ### ** Examples
> 
> data(commons)
> data(dcqEx)
> results <- dcq(reference_data=immgen_dat, mix_data=lung_time_series_dat, marker_set=DCQ_mar)
[1] "selecting only specific markers that we want to use for our analysis"
[1] "running deconvolution on DCQ"
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Calls: dcq ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘commentr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘CommonJavaJars.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘commonmark’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/commonmark/libs/commonmark.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/commonmark/libs/commonmark.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘commonsMath.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CommonTrend’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CommT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘comorbidity’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ROCR
Loading required package: gplots
Error: package or namespace load failed for ‘gplots’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Error: package ‘gplots’ could not be loaded
Execution halted
addxaxis: no visible global function definition for ‘par’
addxaxis: no visible global function definition for ‘axis’
addxaxis: no visible global function definition for ‘mtext’
eplot: no visible global function definition for ‘plot’
eplot: no visible global function definition for ‘par’
eplot: no visible global function definition for ‘axis’
eplot: no visible global function definition for ‘mtext’
Undefined global functions or variables:
  axis mtext par plot
Consider adding
  importFrom("graphics", "axis", "mtext", "par", "plot")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CompareCausalNetworks’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘compareC’:
 .onLoad failed in loadNamespace() for ‘compareC’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/compareC/libs/compareC.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/compareC/libs/compareC.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘compareDF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Running examples in ‘comparer-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mbc
> ### Title: Model benchmark compare
> ### Aliases: mbc
> 
> ### ** Examples
> 
> # Compare distribution of mean for different sample sizes
> mbc(mean(rnorm(1e2)),
+     mean(rnorm(1e4)),
+     times=20)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: mbc ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘comparer.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘comparison’:
 .onLoad failed in loadNamespace() for ‘nnls’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnls/libs/nnls.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnls/libs/nnls.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘compas’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘compboost’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Package suggested but not available for checking: ‘inSilicoDb’
Loading this package had a fatal error status code 1
Loading log:
Loading required package: comperes
Error: package or namespace load failed for ‘comperes’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Error: package ‘comperes’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘comperes’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘compete’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CompGLM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘compHclust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/compHclust/libs/compHclust.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/compHclust/libs/compHclust.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Benchmarking
Loading required package: lpSolveAPI
Error: package or namespace load failed for ‘lpSolveAPI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lpSolveAPI/libs/lpSolveAPI.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lpSolveAPI/libs/lpSolveAPI.so: failed to map segment from shared object
Error: package ‘lpSolveAPI’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: combinat

Attaching package: ‘combinat’

The following object is masked from ‘package:utils’:

    combn

Loading required package: shiny
Error: package or namespace load failed for ‘shiny’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘shiny’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘complexplus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘complmrob’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Package in Depends field not imported from: ‘numDeriv’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
dcomplnorm: no visible global function definition for ‘grad’
dcomplnorm : f1: no visible global function definition for ‘dlnorm’
dcomplnorm : F1: no visible global function definition for ‘plnorm’
dcomplnorm : f1L: no visible global function definition for ‘dlnorm’
dcomplnorm : F1L: no visible global function definition for ‘plnorm’
pcomplnorm: no visible global function definition for ‘grad’
pcomplnorm : f1: no visible global function definition for ‘dlnorm’
pcomplnorm : F1: no visible global function definition for ‘plnorm’
pcomplnorm : F1L: no visible global function definition for ‘plnorm’
qcomplnorm: no visible global function definition for ‘grad’
qcomplnorm : f1: no visible global function definition for ‘dlnorm’
qcomplnorm : F1q: no visible global function definition for ‘qlnorm’
qcomplnorm : F1: no visible global function definition for ‘plnorm’
rcomplnorm: no visible global function definition for ‘runif’
Undefined global functions or variables:
  dlnorm grad plnorm qlnorm runif
Consider adding
  importFrom("stats", "dlnorm", "plnorm", "qlnorm", "runif")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Compositional’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tensorA
Error: package or namespace load failed for ‘tensorA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/tensorA/libs/tensorA.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/tensorA/libs/tensorA.so: failed to map segment from shared object
Error: package ‘tensorA’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: numDeriv
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘survival’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CompQuadForm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CompQuadForm/libs/CompQuadForm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CompQuadForm/libs/CompQuadForm.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  Utility.c:162:8: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
  Utility.c:187:8: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
  Utility.c:211:8: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
  Utility.c:392:8: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
  Utility.c:417:8: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
  Utility.c:442:8: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CompRandFld.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CompRandFld’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘comtradr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ct_commodity_lookup
> ### Title: UN Comtrade commodities database query
> ### Aliases: ct_commodity_lookup
> 
> ### ** Examples
> 
> # Look up commodity descriptions related to "halibut"
> ct_commodity_lookup("halibut",
+                     return_code = FALSE,
+                     return_char = FALSE,
+                     verbose = TRUE)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: ct_commodity_lookup ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘comtradr-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
kef: no visible global function definition for ‘dgamma’
kef: no visible global function definition for ‘dlnorm’
simp_int: no visible global function definition for ‘approx’
Undefined global functions or variables:
  approx dgamma dlnorm
Consider adding
  importFrom("stats", "approx", "dgamma", "dlnorm")
to your NAMESPACE file.
Running examples in ‘concaveman-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: concaveman
> ### Title: concaveman: A very fast 2D concave hull algorithm.
> ### Aliases: concaveman concaveman-package concaveman concaveman.matrix
> ###   concaveman.sf concaveman.SpatialPoints
> 
> ### ** Examples
> 
> data(points)
> polygons <- concaveman(points)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: concaveman ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
prepare_Rd: concor.Rd:4: Dropping empty section \keyword
prepare_Rd: concor.Rd:5: Dropping empty section \keyword
prepare_Rd: concorcano.Rd:4: Dropping empty section \keyword
prepare_Rd: concorcano.Rd:5: Dropping empty section \keyword
prepare_Rd: concoreg.Rd:4: Dropping empty section \keyword
prepare_Rd: concoreg.Rd:5: Dropping empty section \keyword
prepare_Rd: concorgm.Rd:4: Dropping empty section \keyword
prepare_Rd: concorgm.Rd:5: Dropping empty section \keyword
prepare_Rd: concorgmcano.Rd:4: Dropping empty section \keyword
prepare_Rd: concorgmcano.Rd:5: Dropping empty section \keyword
prepare_Rd: concorgmreg.Rd:4: Dropping empty section \keyword
prepare_Rd: concorgmreg.Rd:5: Dropping empty section \keyword
prepare_Rd: concors.Rd:4: Dropping empty section \keyword
prepare_Rd: concors.Rd:5: Dropping empty section \keyword
prepare_Rd: concorscano.Rd:4: Dropping empty section \keyword
prepare_Rd: concorscano.Rd:5: Dropping empty section \keyword
prepare_Rd: concorsreg.Rd:4: Dropping empty section \keyword
prepare_Rd: concorsreg.Rd:5: Dropping empty section \keyword
prepare_Rd: svdbip.Rd:4: Dropping empty section \keyword
prepare_Rd: svdbip.Rd:5: Dropping empty section \keyword
prepare_Rd: svdbip2.Rd:4: Dropping empty section \keyword
prepare_Rd: svdbip2.Rd:5: Dropping empty section \keyword
prepare_Rd: svdbips.Rd:4: Dropping empty section \keyword
prepare_Rd: svdbips.Rd:5: Dropping empty section \keyword
prepare_Rd: svdcp.Rd:4: Dropping empty section \keyword
prepare_Rd: svdcp.Rd:5: Dropping empty section \keyword
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘concreg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘condformat’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘condGEE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rootSolve/libs/rootSolve.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rootSolve/libs/rootSolve.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CondIndTests’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/randomForest/libs/randomForest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/randomForest/libs/randomForest.so: failed to map segment from shared object
Execution halted
Running examples in ‘condir-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: csCompare
> ### Title: Statistically compare CRs towards two CSs
> ### Aliases: csCompare
> 
> ### ** Examples
> 
> csCompare(cs1 = rnorm(n = 100, mean = 10), cs2 = rnorm(n = 100, mean = 9))
Error: .onLoad failed in loadNamespace() for 'mnormt', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘condir-examples.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘conditions’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/conditions/libs/conditions.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/conditions/libs/conditions.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: evd
Error: package or namespace load failed for ‘evd’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/evd/libs/evd.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/evd/libs/evd.so: failed to map segment from shared object
Error: package ‘evd’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CONDOP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/S4Vectors/libs/S4Vectors.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/S4Vectors/libs/S4Vectors.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: statmod
Error: package or namespace load failed for ‘statmod’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/statmod/libs/statmod.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/statmod/libs/statmod.so: failed to map segment from shared object
Error: package ‘statmod’ could not be loaded
Execution halted
ml_solver: no visible global function definition for ‘approx’
select_kmax: no visible global function definition for ‘median’
Undefined global functions or variables:
  approx median
Consider adding
  importFrom("stats", "approx", "median")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘condSURV’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: jsonlite
Error: package or namespace load failed for ‘jsonlite’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Error: package ‘jsonlite’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘condvis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘coneproj’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tcltk
Error: package or namespace load failed for ‘confidence’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘config’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/yaml/libs/yaml.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/yaml/libs/yaml.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘configr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘conflicted’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ConfoundedMeta’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘conf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SDMTools/libs/SDMTools.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SDMTools/libs/SDMTools.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘confSAM.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: pracma
Loading required package: geigen
Error: package or namespace load failed for ‘geigen’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/geigen/libs/geigen.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/geigen/libs/geigen.so: failed to map segment from shared object
Error: package ‘geigen’ could not be loaded
Execution halted
conicPlot: no visible global function definition for ‘palette’
conicPlotAsymptotes: no visible global function definition for
  ‘palette’
conicPlotAsymptotes: no visible global function definition for ‘abline’
conicPlotAxes: no visible global function definition for ‘palette’
conicPlotAxes: no visible global function definition for ‘abline’
plotDegenerateConic: no visible global function definition for ‘plot’
plotDegenerateConic: no visible global function definition for ‘points’
plotDegenerateConic: no visible global function definition for ‘abline’
plotEllipsis: no visible global function definition for ‘lines’
plotEllipsis: no visible global function definition for ‘plot’
plotEllipsis: no visible global function definition for ‘points’
plotHyperbola: no visible global function definition for ‘lines’
plotHyperbola: no visible global function definition for ‘plot’
plotHyperbola: no visible global function definition for ‘points’
plotParabola: no visible global function definition for ‘lines’
plotParabola: no visible global function definition for ‘plot’
Undefined global functions or variables:
  abline lines palette plot points
Consider adding
  importFrom("grDevices", "palette")
  importFrom("graphics", "abline", "lines", "plot", "points")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Conigrave’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
'library' or 'require' call to ‘parallel’ which was already attached by Depends.
  Please remove these calls from your code.
'library' or 'require' calls in package code:
  ‘Rmpi’ ‘snow’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: ‘parallel’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
ConjointChecks: no visible global function definition for ‘makeCluster’
ConjointChecks: no visible global function definition for
  ‘clusterSetRNGStream’
ConjointChecks: no visible global function definition for
  ‘clusterApply’
ConjointChecks: no visible global function definition for ‘stopCluster’
omni.check: no visible global function definition for ‘runif’
omni.check: no visible global function definition for ‘quantile’
plot.checks: no visible global function definition for ‘mtext’
plot.checks: no visible global function definition for ‘text’
Undefined global functions or variables:
  clusterApply clusterSetRNGStream makeCluster mtext quantile runif
  stopCluster text
Consider adding
  importFrom("graphics", "mtext", "text")
  importFrom("stats", "quantile", "runif")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘conjoint’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/AlgDesign/libs/AlgDesign.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/AlgDesign/libs/AlgDesign.so: failed to map segment from shared object
Execution halted
Running examples in ‘ConnMatTools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: d.rel.conn.multinomial.unnorm
> ### Title: Calculates unnormalized probability density for relative
> ###   connectivity values from multiple distinct sites
> ### Aliases: d.rel.conn.multinomial.unnorm
> 
> ### ** Examples
> 
> library(ConnMatTools)
> 
> ps <- c(0.7,0.5) # Fraction of eggs "marked" at each source site
> ks <- c(4,5) # Number of marked settlers among sample from each source site
> n.sample <- 20 # Total sample size.  Must be >= sum(ks)
> 
> 
> phis0 = runif(3,min=0.05)
> phis0 = phis0 / sum(phis0)
> phis0 = phis0[1:2] # Don't include relative connectivity of unknown sites
> 
> nbatch=1e4
> 
> library(mcmc)
Error: package or namespace load failed for ‘mcmc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mcmc/libs/mcmc.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mcmc/libs/mcmc.so: failed to map segment from shared object
Execution halted
Running ‘test.connectivity_estimation.R’ [0s/0s]
  Running ‘test.connectivity_estimation.beta.prior.R’ [0s/0s]
  Running ‘test.connectivity_estimation.distributions.R’ [1s/1s]
  Running ‘test.connectivity_estimation.multinomial.R’ [0s/0s]
  Running ‘test.connectivity_estimation.multiple.R’ [10s/10s]
  Running ‘test.dpr_model.R’ [0s/0s]
  Running ‘test.laplacianConnMat.R’ [0s/0s]
  Running ‘test.marked.egg.fraction.R’ [0s/0s]
  Running ‘test.optimalSplitConnMat.R’ [1s/1s]
  Running ‘test.retentionStats.R’ [0s/0s]
Running the tests in ‘tests/test.connectivity_estimation.multinomial.R’ failed.
Complete output:
  > library(ConnMatTools)
  > 
  > ps <- c(0.7,0.5) # Fraction of eggs "marked" at each source site
  > ks <- c(4,5) # Number of marked settlers among sample from each source site
  > n.sample <- 20 # Total sample size.  Must be >= sum(ks)
  > 
  > 
  > phis0 = runif(3,min=0.05)
  > phis0 = phis0 / sum(phis0)
  > phis0 = phis0[1:2] # Don't include relative connectivity of unknown sites
  > 
  > nbatch=1e4
  > 
  > library(mcmc)
  Error: package or namespace load failed for 'mcmc' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mcmc/libs/mcmc.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mcmc/libs/mcmc.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: proxy
Error: package or namespace load failed for ‘proxy’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/proxy/libs/proxy.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/proxy/libs/proxy.so: failed to map segment from shared object
Error: package ‘proxy’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tcltk
Loading required package: gWidgets
Error: package or namespace load failed for ‘CONS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/leaps/libs/leaps.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/leaps/libs/leaps.so: failed to map segment from shared object
Execution halted
Running examples in ‘constants-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: syms
> ### Title: Lists Containing All Symbols.
> ### Aliases: syms syms_with_errors syms_with_units
> ### Keywords: datasets
> 
> ### ** Examples
> 
> # the speed of light
> with(syms, c0)
[1] 299792458
> 
> # the Planck constant
> attach(syms)
The following object is masked from package:base:

    F

> hbar
[1] 1.054572e-34
> 
> detach(syms); attach(syms_with_errors)
The following object is masked from package:base:

    F

> hbar
1.05457180(1)e-34
> 
> detach(syms_with_errors); attach(syms_with_units)
> hbar
Error: object 'hbar' not found
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘constellation’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘overview-S3.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ContaminatedMixt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘contextual’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘contfrac’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/contfrac/libs/contfrac.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/contfrac/libs/contfrac.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘conting’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Running examples in ‘ContourFunctions-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cf
> ### Title: Simpler function for making contours with cf package. Won't give
> ###   argument completion, so all must be specified
> ### Aliases: cf
> 
> ### ** Examples
> 
> cf(function(x){x[1]^2 - x[2]})
> x <- runif(20)
> y <- runif(20)
> z <- exp(-(x-.5)^2-5*(y-.5)^2)# + rnorm(20,0,.05)
> cf(x,y,z)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Calls: cf ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Introduction_to_the_cf_R_package.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rms
Loading required package: Hmisc
Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lattice’ could not be loaded
Execution halted
Running examples in ‘control-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: acker
> ### Title: Pole placement gain selection using Ackermann's formula
> ### Aliases: acker
> 
> ### ** Examples
> 
> F <- rbind(c(0,1),c(0,0))
> G <- rbind(0,1)
> H <- cbind(1,0);
> J <- 0
> t <- 1
> sys  <-  ss(F,G, H,J)
> A  <-  c2d(sys,t);
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Calls: c2d ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘controlTest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tcltk
Loading required package: tkrplot
Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lattice’ could not be loaded
In addition: Warning message:
loading Rplot failed 
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: phytools
Loading required package: ape
Error: package or namespace load failed for ‘ape’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘ape’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘convey’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘convoSPAT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/proxy/libs/proxy.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/proxy/libs/proxy.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cooccurNet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cooccur’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gmp/libs/gmp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gmp/libs/gmp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘coopProductGame’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lpSolveAPI/libs/lpSolveAPI.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lpSolveAPI/libs/lpSolveAPI.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘coop’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/coop/libs/coop.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/coop/libs/coop.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CoordinateCleaner’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘copBasic’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rngWELL/libs/rngWELL.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rngWELL/libs/rngWELL.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mcmcse
Error: package or namespace load failed for ‘mcmcse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘mcmcse’ could not be loaded
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > 
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: gsDesign
Loading required package: xtable
Loading required package: ggplot2
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘ggplot2’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘copulaedas’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘copula’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mirt
Loading required package: stats4
Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lattice’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘coRanking’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/coRanking/libs/coRanking.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/coRanking/libs/coRanking.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Corbi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cordillera’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cord’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CORElearn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rpart/libs/rpart.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rpart/libs/rpart.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘coreNLP’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
advanceRNG: no visible global function definition for ‘runif’
randomEventMoves: no visible global function definition for ‘runif’
randomRescaledEventMoves: no visible global function definition for
  ‘runif’
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘coreSim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
coreTDT_geneset: no visible global function definition for
  ‘write.table’
pvalue_calculator: no visible global function definition for ‘dbinom’
Undefined global functions or variables:
  dbinom write.table
Consider adding
  importFrom("stats", "dbinom")
  importFrom("utils", "write.table")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CorporaCoCo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CoRpower’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/osDesign/libs/osDesign.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/osDesign/libs/osDesign.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘corpus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/utf8/libs/utf8.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/utf8/libs/utf8.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘corr2D’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/colorspace/libs/colorspace.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/colorspace/libs/colorspace.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CorrBin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/geepack/libs/geepack.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/geepack/libs/geepack.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘corrDNA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘correctedAUC’:
 .onLoad failed in loadNamespace() for ‘mnormt’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CorrectOverloadedPeaks’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: diagram
Loading required package: shape
Loading required package: rgl
Error: package or namespace load failed for ‘rgl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘rgl’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CorReg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: calibrate
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘corrgram’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TSP/libs/TSP.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TSP/libs/TSP.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘corrplot-intro.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘corrr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
corr.Qmatrix: no visible global function definition for ‘cor’
corr.Qmatrix: no visible global function definition for ‘cor.test’
summarise.Fst: no visible global function definition for ‘cor’
summarise.Fst: no visible global function definition for ‘sd’
summarise.lnPD: no visible global function definition for ‘sd’
Undefined global functions or variables:
  cor cor.test sd
Consider adding
  importFrom("stats", "cor", "cor.test", "sd")
to your NAMESPACE file.
Rd file 'corr.Qmatrix.Rd':
  \usage lines wider than 90 characters:
     corr.Qmatrix(filepath = "./", instruct = FALSE, rowncol = TRUE, avmax = TRUE, pvalue = FALSE, raw = TRUE, r = 0.99, p = 0.05)

Rd file 'rowncolMatrix-method.Rd':
  \examples lines wider than 100 characters:
     test <- rowncolMatrix(K = 3, filtermatrix = table(matrix(c("Y","Y","Y",NA,"Y","Y",NA,NA,"Y"),ncol = 3, byrow = TRUE)))

These lines will be truncated in the PDF manual.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CorrToolBox’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # file corset/tests/testthat.R
  > # Copyright (C) 2016 Merck Sharp & Dohme Corp. a subsidiary of Merck & Co.
  > # , Inc., Kenilworth, NJ, USA.
  > #
  > # This program is free software: you can redistribute it and/or modify
  > # it under the terms of the GNU General Public License as published by
  > # the Free Software Foundation, either version 3 of the License, or
  > # (at your option) any later version.
  > #
  > # This program is distributed in the hope that it will be useful,
  > # but WITHOUT ANY WARRANTY; without even the implied warranty of
  > # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  > # GNU General Public License for more details.
  > #
  > # You should have received a copy of the GNU General Public License
  > # along with this program.  If not, see <http://www.gnu.org/licenses/>.
  > 
  > Sys.setenv("R_TESTS" = "")
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CorShrink’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘corTest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
dist: no visible global function definition for ‘quantile’
edgecount: no visible global function definition for ‘reshape’
edgecutoff: no visible global function definition for ‘boxplot’
edgecutoff: no visible global function definition for ‘sd’
edgecutoff: no visible global function definition for ‘median’
edgecutoff: no visible global function definition for ‘IQR’
Undefined global functions or variables:
  IQR boxplot median quantile reshape sd
Consider adding
  importFrom("graphics", "boxplot")
  importFrom("stats", "IQR", "median", "quantile", "reshape", "sd")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cosa’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nloptr/libs/nloptr.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nloptr/libs/nloptr.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: cosinor
Error: package or namespace load failed for ‘cosinor’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘cosinor’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cosinor’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
D.M: no visible global function definition for ‘integrate’
lookbackTime: no visible global function definition for ‘integrate’
Undefined global functions or variables:
  integrate
Consider adding
  importFrom("stats", "integrate")
to your NAMESPACE file.
Rd file 'mass.CO.Rd':
  \usage lines wider than 90 characters:
     mass.CO(intInt, z, alpha = 0.8, f.rest = 115.27, omega.m = 0.27, omega.lambda = 0.73, H.0 = 71)

These lines will be truncated in the PDF manual.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CosW’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/fdrtool/libs/fdrtool.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/fdrtool/libs/fdrtool.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: RCurl
Loading required package: bitops
Error: package or namespace load failed for ‘bitops’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Error: package ‘bitops’ could not be loaded
Execution halted
Running examples in ‘countcolors-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: changePixelColor
> ### Title: Change all specified pixels to a new color
> ### Aliases: changePixelColor
> 
> ### ** Examples
> 
> # Change a rectangle in the center to black
> flowers <- jpeg::readJPEG(system.file("extdata", "flowers.jpg", package =
+ "countcolors"))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jpeg/libs/jpeg.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jpeg/libs/jpeg.so: failed to map segment from shared object
Calls: :: ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: msme
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Countr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CountsEPPM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘countyfloods’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘countytimezones’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘countyweather’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘COUSCOus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘covafillr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/covafillr/libs/covafillr.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/covafillr/libs/covafillr.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘covatest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Running examples in ‘coveffectsplot-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: forest_plot
> ### Title: Forest plot
> ### Aliases: forest_plot
> 
> ### ** Examples
> 
> library(dplyr)
Error: package or namespace load failed for ‘dplyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘introduction_to_coveffectsplot.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘covfefe’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
covreg.mcmc: no visible global function definition for ‘model.frame’
covreg.mcmc: no visible global function definition for ‘model.matrix’
covreg.mcmc: no visible global function definition for ‘model.response’
covreg.mcmc: no visible global function definition for ‘lm’
covreg.mcmc: no visible global function definition for ‘rnorm’
covreg.mcmc: no visible global function definition for ‘cov’
rmn: no visible global function definition for ‘rnorm’
rwish: no visible global function definition for ‘rnorm’
Undefined global functions or variables:
  cov lm model.frame model.matrix model.response rnorm
Consider adding
  importFrom("stats", "cov", "lm", "model.frame", "model.matrix",
             "model.response", "rnorm")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘covr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/covr/libs/covr.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/covr/libs/covr.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CovSelHigh’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bnlearn/libs/bnlearn.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bnlearn/libs/bnlearn.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: dr
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Running examples in ‘covsep-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: generate_surface_data
> ### Title: Generate surface data
> ### Aliases: generate_surface_data
> 
> ### ** Examples
> 
> Data = generate_surface_data(30, C1, C2, gamma=0)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Calls: generate_surface_data ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Non-standard file/directory found at top level:
  ‘DESCRIPTION.old’
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘covTestR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CovTools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Running examples in ‘cowbell-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.cowbell
> ### Title: Plots the obtained cowbell function.
> ### Aliases: plot.cowbell
> 
> ### ** Examples
> 
> # Run a simplified anaylsis with 10 iterations only (to save time.)
> concept<-generateCowbellConcept(Fun ~ Fluency * Absorption, 1, 9, 1, 7, 1, 7)
> data(allFun)
> test<-generateCowbell(concept, allFun, 10)
Working on full model.
Working on model without breakpoint.
> plot(test)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Calls: plot ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘cowbell.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running ‘test-all.R’ [0s/0s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library("testthat")
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘cowsay_tutorial.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Non-standard file/directory found at top level:
  ‘changeLog’
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘coxphf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘coxphMIC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘coxrt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘coxsei’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/coxsei/libs/coxsei.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/coxsei/libs/coxsei.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: MESS
Loading required package: geepack
Error: package or namespace load failed for ‘geepack’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/geepack/libs/geepack.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/geepack/libs/geepack.so: failed to map segment from shared object
Error: package ‘geepack’ could not be loaded
Execution halted
Package in Depends field not imported from: ‘tcltk’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CPBayes’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘cpca-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cpc
> ### Title: Function cpc.
> ### Aliases: cpc
> 
> ### ** Examples
> 
> require(plyr)
Loading required package: plyr
Error: package or namespace load failed for ‘plyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
> require(abind)
Loading required package: abind
> 
> data(iris)
> 
> C <- daply(iris, "Species", function(x) cov(x[, -ncol(x)]))
Error in daply(iris, "Species", function(x) cov(x[, -ncol(x)])) : 
  could not find function "daply"
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CpDyna’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CpGFilter’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/matrixStats/libs/matrixStats.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/matrixStats/libs/matrixStats.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cpm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpm/libs/cpm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpm/libs/cpm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ineq
Loading required package: kappalab
Loading required package: lpSolve
Error: package or namespace load failed for ‘lpSolve’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lpSolve/libs/lpSolve.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lpSolve/libs/lpSolve.so: failed to map segment from shared object
Error: package ‘lpSolve’ could not be loaded
Execution halted
Running examples in ‘CP-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: CP-package
> ### Title: Conditional Power Calculations
> ### Aliases: CP-package CP
> 
> ### ** Examples
> 
>  # data frame 'test' generated by 'GenerateDataFrame'
>  
>  # conditional power calculations
>  # within the exponential model
>  ConPwrExp(data = test, cont.time = 12, new.pat = c(2.5, 2.5),
+            theta.0 = 0.75, alpha = 0.05,
+            disp.data = TRUE, plot.km = TRUE)
                           A      B
Patients                  99    102
Death Events              51     60
Censored                  48     42
Person Months            159    173
Estimated Hazard      0.3190 0.3467
Further Person Months    217    185
                              
Postulated Hazard Ratio 0.7500
Estimated Hazard Ratio  1.0869

Conditional Power 0.1723 

Note: Conditional power is calculated in view of the hazard ratio which is defined as the ratio of the hazard of group B to the hazard of group A.
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Calls: ConPwrExp ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Package required but not available: ‘tpr’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cpr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CPsurv’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘cptec-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: condicoes_tempo
> ### Title: Data frame containing "tempo" descriptions
> ### Aliases: condicoes_tempo
> ### Keywords: brazil forecast weather
> 
> ### ** Examples
> 
> condicoes_tempo()
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: condicoes_tempo ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cpt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
distance.comoving: no visible global function definition for
  ‘integrate’
Undefined global functions or variables:
  integrate
Consider adding
  importFrom("stats", "integrate")
to your NAMESPACE file.
Found the following apparent S3 methods exported but not registered:
  print.cramertest
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
.cramer.kritwertfft: no visible global function definition for ‘fft’
Undefined global functions or variables:
  fft
Consider adding
  importFrom("stats", "fft")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cranlike’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cranlogs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cranly’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CRANsearcher’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
crantastic.submitInstalledPackages: no visible global function
  definition for ‘installed.packages’
postData: no visible global function definition for ‘make.socket’
postData: no visible global function definition for ‘write.socket’
postData: no visible global function definition for ‘read.socket’
postData: no visible global function definition for ‘close.socket’
Undefined global functions or variables:
  close.socket installed.packages make.socket read.socket write.socket
Consider adding
  importFrom("utils", "close.socket", "installed.packages",
             "make.socket", "read.socket", "write.socket")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘crawl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > 
  > library(crayon)
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Found the following apparent S3 methods exported but not registered:
  print.crblocks_output
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
catrandpvalue: no visible global function definition for ‘read.table’
catrandpvalue: no visible global function definition for ‘rmultinom’
catrandpvaluepermute: no visible global function definition for
  ‘read.table’
catrandstat: no visible global function definition for ‘stack’
catrandstat: no visible global function definition for ‘pchisq’
catrandstat: no visible binding for global variable ‘var’
Undefined global functions or variables:
  pchisq read.table rmultinom stack var
Consider adding
  importFrom("stats", "pchisq", "rmultinom", "var")
  importFrom("utils", "read.table", "stack")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘crch’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
cm.CVaR: no visible global function definition for ‘quantile’
cm.hist: no visible global function definition for ‘hist’
cm.quantile: no visible global function definition for ‘qnorm’
cm.rnorm: no visible global function definition for ‘rnorm’
Undefined global functions or variables:
  hist qnorm quantile rnorm
Consider adding
  importFrom("graphics", "hist")
  importFrom("stats", "qnorm", "quantile", "rnorm")
to your NAMESPACE file.
Running examples in ‘CreditRisk-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Merton
> ### Title: Merton's model
> ### Aliases: Merton
> 
> ### ** Examples
> 
> mod <- Merton(L = 10, V0 = 20, sigma = 0.2, r = 0.005,
+               t = c(0.50, 1.00, 2.00, 3.25, 5.00, 10.00, 15.00, 20.00))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/spatial/libs/spatial.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/spatial/libs/spatial.so: failed to map segment from shared object
Calls: Merton ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘creditr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘credule’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/credule/libs/credule.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/credule/libs/credule.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cregg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cRegulome’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CRF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘crfsuite’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cricketr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: splines
Error: package or namespace load failed for ‘crimCV’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/crimCV/libs/crimCV.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/crimCV/libs/crimCV.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘crimedata’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘crimelinkage-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: makeGroups
> ### Title: Generates crime groups from crime series data
> ### Aliases: makeGroups
> 
> ### ** Examples
> 
> data(crimes)
>  data(offenders)
>  seriesData = makeSeriesData(crimedata=crimes,offenderTable=offenders)
>  groups = makeGroups(seriesData,method=1)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Calls: makeGroups ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘crimeclustering.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘crisp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘crminer’:
 .onLoad failed in loadNamespace() for ‘crminer’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rappdirs/libs/rappdirs.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rappdirs/libs/rappdirs.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: pcaMethods
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
    rownames, sapply, setdiff, sort, table, tapply, union, unique,
    unsplit, which, which.max, which.min

Error: package or namespace load failed for ‘Biobase’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Biobase/libs/Biobase.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Biobase/libs/Biobase.so: failed to map segment from shared object
Error: package ‘Biobase’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CRM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CRM/libs/CRM.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CRM/libs/CRM.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cromwellDashboard’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cronR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘CrossClustering-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ari
> ### Title: Computes the adjusted Rand index and the confidence interval,
> ###   comparing two classifications from a contingency table.
> ### Aliases: ari print.ari
> 
> ### ** Examples
> 
> 
> #### This example compares the adjusted Rand Index as computed on the
> ### partitions given by Ward's algorithm with the ground truth on the
> ### famous Iris data set by the adjustedRandIndex function
> ### {mclust package} and by the ari function.
> 
> library(CrossClustering)
> library(mclust)
Error: package or namespace load failed for ‘mclust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mclust/libs/mclust.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mclust/libs/mclust.so: failed to map segment from shared object
Execution halted
BootC : BSs: no visible global function definition for ‘lm’
BootC : BSs: no visible global function definition for ‘vcov’
BootC: no visible global function definition for ‘boot’
BootC: no visible global function definition for ‘boot.ci’
DeltaC: no visible global function definition for ‘lm’
DeltaC: no visible global function definition for ‘vcov’
FiellerC: no visible global function definition for ‘lm’
FiellerC: no visible global function definition for ‘vcov’
nonLinearC: no visible global function definition for ‘nls’
Undefined global functions or variables:
  boot boot.ci lm nls vcov
Consider adding
  importFrom("stats", "lm", "nls", "vcov")
to your NAMESPACE file.
Running examples in ‘crossReg-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: BootC
> ### Title: Confidence intervals for crossover points using the bootstrap
> ###   methods
> ### Aliases: BootC
> ### Keywords: ~kwd1 ~kwd2
> 
> ### ** Examples
> 
> # example data
> library(MASS)
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘crossrun-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: boxprobt
> ### Title: Box Cumulative Sums
> ### Aliases: boxprobt
> 
> ### ** Examples
> 
> nill <- Rmpfr::mpfr(0, 120)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gmp/libs/gmp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gmp/libs/gmp.so: failed to map segment from shared object
Calls: :: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘vignettecrossrun.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CrossScreening’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘crosstalk’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Modeler
Loading required package: ClassDiscovery
Loading required package: cluster
Error: package or namespace load failed for ‘cluster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Error: package ‘cluster’ could not be loaded
Execution halted
Running examples in ‘crossval-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: crossval
> ### Title: Generic Function for Cross Valdidation
> ### Aliases: crossval
> ### Keywords: multivariate
> 
> ### ** Examples
> 
> # load "crossval" package
> library("crossval")
> 
> # classification examples
> 
> # set up lda prediction function
> predfun.lda = function(train.x, train.y, test.x, test.y, negative)
+ {
+   require("MASS") # for lda function
+ 
+   lda.fit = lda(train.x, grouping=train.y)
+   ynew = predict(lda.fit, test.x)$class
+ 
+   # count TP, FP etc.
+   out = confusionMatrix(test.y, ynew, negative=negative)
+ 
+   return( out )
+ }
> 
> 
> # Student's Sleep Data
> data(sleep)
> X = as.matrix(sleep[,1, drop=FALSE]) # increase in hours of sleep 
> Y = sleep[,2] # drug given 
> plot(X ~ Y)
> levels(Y) # "1" "2"
[1] "1" "2"
> dim(X) # 20  1
[1] 20  1
> 
> set.seed(12345)
> cv.out = crossval(predfun.lda, X, Y, K=5, B=20, negative="1")
Number of folds: 5 
Total number of CV fits: 100 

Round # 1 of 20 
CV Fit # 1 of 100 
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error in lda(train.x, grouping = train.y) : could not find function "lda"
Calls: crossval -> predfun
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CrossVA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Running examples in ‘crosswalkr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: encodefrom
> ### Title: Encode data frame column using external crosswalk file.
> ### Aliases: encodefrom encodefrom_
> 
> ### ** Examples
> 
> df <- data.frame(state = c('Kentucky','Tennessee','Virginia'),
+                  stfips = c(21,47,51),
+                  cenregnm = c('South','South','South'))
> 
> df_tbl <- tibble::as_data_frame(df)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: :: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘crosswalkr.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘crossword.r-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Crossword
> ### Title: Crossword
> ### Aliases: Crossword
> ### Keywords: datasets
> 
> ### ** Examples
> 
> 
> library(crossword.r)
> cw <- Crossword$new(rows = 4, columns = 4)
> cw$add_words(c("back", "nasa", "kick", "nuk", "ic", "sic"))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘crov’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/VGAM/libs/VGAM.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/VGAM/libs/VGAM.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CRPClustering’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘crp.CSFP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: crunch
Error: package or namespace load failed for ‘crunch’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Error: package ‘crunch’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: crqa
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Warning: no function found corresponding to methods exports from ‘CR’ for: ‘show’

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
curerate : cr: no visible global function definition for ‘rbinom’
curerate : cr: no visible global function definition for ‘rexp’
curerate : cr: no visible global function definition for ‘runif’
curerate: no visible global function definition for ‘new’
showcr: no visible global function definition for ‘show’
Undefined global functions or variables:
  new rbinom rexp runif show
Consider adding
  importFrom("methods", "new", "show")
  importFrom("stats", "rbinom", "rexp", "runif")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Loading this package had a fatal error status code 1
Loading log:
Loading required package: cmprsk
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘survival’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘crseEventStudy’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘crsra’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘crs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘extending.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘crul’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘crunch’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cruts’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rJPSGCS
Loading required package: rJava
Error: package or namespace load failed for ‘rJava’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Error: package ‘rJava’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: MissMech
Loading required package: kSamples
Loading required package: SuppDists
Error: package or namespace load failed for ‘SuppDists’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SuppDists/libs/SuppDists.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SuppDists/libs/SuppDists.so: failed to map segment from shared object
Error: package ‘SuppDists’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: flux
Loading required package: caTools
Error: package or namespace load failed for ‘caTools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Error: package ‘caTools’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘csabounds’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: marg
Loading required package: statmod
Error: package or namespace load failed for ‘statmod’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/statmod/libs/statmod.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/statmod/libs/statmod.so: failed to map segment from shared object
Error: package ‘statmod’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CsChange’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CSeqpat’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CSESA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/S4Vectors/libs/S4Vectors.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/S4Vectors/libs/S4Vectors.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CSFA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/leaps/libs/leaps.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/leaps/libs/leaps.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘csn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘csp.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘csrplus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Non-standard file/directory found at top level:
  ‘test.html’
Package in Depends field not imported from: ‘compiler’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
csSAM: no visible binding for global variable ‘quantile’
csSAM: no visible global function definition for ‘median’
csfit: no visible global function definition for ‘lsfit’
csfit: no visible global function definition for ‘ls.diag’
plotCsSAM: no visible global function definition for ‘pdf’
plotCsSAM: no visible global function definition for ‘par’
plotCsSAM: no visible global function definition for ‘plot’
plotCsSAM: no visible global function definition for ‘title’
plotCsSAM: no visible global function definition for ‘dev.off’
runSAM: no visible binding for global variable ‘median’
runSAM: no visible global function definition for ‘quantile’
Undefined global functions or variables:
  dev.off ls.diag lsfit median par pdf plot quantile title
Consider adding
  importFrom("grDevices", "dev.off", "pdf")
  importFrom("graphics", "par", "plot", "title")
  importFrom("stats", "ls.diag", "lsfit", "median", "quantile")
to your NAMESPACE file.
cstar: no visible global function definition for ‘vcov’
cstar : utility: no visible global function definition for ‘dt’
cstar : maximand: no visible global function definition for ‘integrate’
cstar: no visible global function definition for ‘uniroot’
cstari : utility: no visible global function definition for ‘dt’
cstari : maximand: no visible global function definition for
  ‘integrate’
cstari: no visible global function definition for ‘uniroot’
cstarme : utility: no visible global function definition for ‘density’
cstarme : maximand: no visible global function definition for
  ‘integrate’
cstarme : maximand: no visible global function definition for ‘sd’
cstarme: no visible global function definition for ‘uniroot’
Undefined global functions or variables:
  density dt integrate sd uniroot vcov
Consider adding
  importFrom("stats", "density", "dt", "integrate", "sd", "uniroot",
             "vcov")
to your NAMESPACE file.
Running examples in ‘cstar-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cstarme
> ### Title: Compute cstar for simulated marginal effects
> ### Aliases: cstarme
> ### Keywords: sustantive significance regression
> 
> ### ** Examples
> 
> # create some logit data
> x <- rnorm(50)
> xb <- .5 + 2*x
> pry <- exp(xb) / (1 + exp(xb))
> y <- rbinom(50, 1, pry)
> 
> plot(x, y)
> 
> # run logistic regression
> mod <- glm(y~x, family=binomial(link="logit"))
> 
> # extract variance-covariance matrix
> VCV <- vcov(mod)
> 
> # simulate intercept and B1 from multivariate normal
> require(MASS)
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
> simulated_betas <- mvrnorm(n=50, mu=coefficients(mod), Sigma=VCV)
Error in mvrnorm(n = 50, mu = coefficients(mod), Sigma = VCV) : 
  could not find function "mvrnorm"
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘csvread’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/csvread/libs/csvread.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/csvread/libs/csvread.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘csvy’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ctmcd’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: SuperLearner
Loading required package: nnls
Error: package or namespace load failed for ‘nnls’:
 .onLoad failed in loadNamespace() for ‘nnls’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnls/libs/nnls.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/nnls/libs/nnls.so: failed to map segment from shared object
Error: package ‘nnls’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ctmm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CTM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cts’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cts/libs/cts.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cts/libs/cts.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: CTT
Loading required package: shiny
Error: package or namespace load failed for ‘shiny’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘shiny’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CTTShiny’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘ctv-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ctv-server
> ### Title: CRAN Task Views: Tools for Maintainers
> ### Aliases: read.ctv ctv2html check_ctv_packages repos_update_views
> ### Keywords: utilities
> 
> ### ** Examples
> 
> ## read .ctv file
> x <- read.ctv(system.file("ctv", "Econometrics.ctv", package = "ctv"))
Error: .onLoad failed in loadNamespace() for 'XML', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...

Error: processing vignette ‘ctv-howto.Rnw’ failed with diagnostics:
 chunk 1 
Error : .onLoad failed in loadNamespace() for 'XML', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cubature’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cubing’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘CUBvignette-knitr.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CuCubes’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CuCubes/libs/CuCubes.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CuCubes/libs/CuCubes.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CUFF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cultevo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Found the following hidden files and directories:
  .gitignore
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
Malformed Title field: should not end in a period.
License components which are templates and need '+ file LICENSE':
  MIT
Non-standard files/directories found at top level:
  ‘BUGS.md’ ‘TODO.md’ ‘benchmarks’ ‘build_script.sh’ ‘doc’
  ‘iddply_dt.R’ ‘profiling’
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘curl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘curstatCI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: multcomp
Loading required package: mvtnorm
Error: package or namespace load failed for ‘mvtnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘mvtnorm’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘curvHDR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cusp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cusp/libs/cusp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cusp/libs/cusp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘customizedTraining’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/FNN/libs/FNN.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/FNN/libs/FNN.so: failed to map segment from shared object
Execution halted
Running examples in ‘customLayout-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: lay_grid
> ### Title: Use Layout object with grid graphics.
> ### Aliases: lay_grid layGrid
> 
> ### ** Examples
> 
> 
> library(ggplot2)
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Roadmap.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘customsteps’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CUSUMdesign’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CUSUMdesign/libs/CUSUMdesign.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CUSUMdesign/libs/CUSUMdesign.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cusum’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/checkmate/libs/checkmate.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cutoffR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cutpointr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
delta.glm: no visible global function definition for ‘glm’
delta.glm: no visible global function definition for ‘residuals’
delta.glm: no visible global function definition for ‘fitted’
delta.glm: no visible global function definition for ‘predict.glm’
two.stage.model.outputs: no visible global function definition for ‘sd’
Undefined global functions or variables:
  fitted glm predict.glm residuals sd
Consider adding
  importFrom("stats", "fitted", "glm", "predict.glm", "residuals", "sd")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cvar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
calfun: no visible global function definition for ‘optim’
calfun: no visible global function definition for ‘cov’
calfun: no visible global function definition for ‘var’
Undefined global functions or variables:
  cov optim var
Consider adding
  importFrom("stats", "cov", "optim", "var")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cvcrand’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘how_to_test_CVs.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Error: package or namespace load failed for ‘CVglasso’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
func.constructRegressionFormula: no visible global function definition
  for ‘as.formula’
func.crossValidationAnalysis: no visible global function definition for
  ‘glm’
func.crossValidationAnalysis: no visible global function definition for
  ‘predict’
func.crossValidationAnalysis: no visible global function definition for
  ‘write.table’
func.externalValidationAnalysis: no visible global function definition
  for ‘predict’
func.externalValidationAnalysis: no visible global function definition
  for ‘write.table’
func.linearRegressionAnalysis: no visible global function definition
  for ‘glm’
func.linearRegressionAnalysis: no visible global function definition
  for ‘predict’
func.linearRegressionAnalysis: no visible global function definition
  for ‘write.table’
func.sortDataColumns: no visible global function definition for
  ‘write.table’
mainfunc.q2: no visible global function definition for ‘write.table’
mainfunc.q2: no visible global function definition for ‘new’
mainfunc.stats: no visible global function definition for ‘write.table’
mainfunc.stats: no visible global function definition for ‘new’
Undefined global functions or variables:
  as.formula glm new predict write.table
Consider adding
  importFrom("methods", "new")
  importFrom("stats", "as.formula", "glm", "predict")
  importFrom("utils", "write.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Loading this package had a fatal error status code 1
Loading log:
Loading required package: PMA
Loading required package: impute
Error: package or namespace load failed for ‘impute’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/impute/libs/impute.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/impute/libs/impute.so: failed to map segment from shared object
Error: package ‘impute’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: kernlab
Error: package or namespace load failed for ‘kernlab’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/kernlab/libs/kernlab.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/kernlab/libs/kernlab.so: failed to map segment from shared object
Error: package ‘kernlab’ could not be loaded
Execution halted
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘lattice’ ‘robustbase’
A package should be listed in only one of these fields.
random.CV: no visible global function definition for ‘var’
regular.CV: no visible global function definition for ‘var’
Undefined global functions or variables:
  var
Consider adding
  importFrom("stats", "var")
to your NAMESPACE file.
Running examples in ‘CVTuningCov-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: CVTuningCov-package
> ### Title: Select Tuning Parameters based on CV in Regularized Estimators
> ###   of Covariance Matrices
> ### Aliases: CVTuningCov-package CVTuningCov
> ### Keywords: banding covariance matrix cross-validation Frobenius norm
> ###   operator norm thresholding
> 
> ### ** Examples
> 
> library(MASS);
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CVXR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cxhull’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cxhull/libs/cxhull.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cxhull/libs/cxhull.so: failed to map segment from shared object
Execution halted
cxxfun.from.dll: no visible global function definition for ‘new’
cxxfun.from.dso.bin: no visible global function definition for ‘new’
cxxfunctionplus: no visible global function definition for ‘getPlugin’
cxxfunctionplus: no visible global function definition for
  ‘cxxfunction’
cxxfunctionplus: no visible global function definition for ‘new’
show,cxxdso: no visible global function definition for ‘object.size’
Undefined global functions or variables:
  cxxfunction getPlugin new object.size
Consider adding
  importFrom("methods", "new")
  importFrom("utils", "object.size")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cycleRtools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘cyclestreets-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: json2sf_cs
> ### Title: Convert output from CycleStreets.net into sf object
> ### Aliases: json2sf_cs
> 
> ### ** Examples
> 
> from = "Leeds Rail Station"
> to = "University of Leeds"
> # save result from the API call to journey.json
> # res_json = stplanr::route_cyclestreet(from, to, silent = FALSE, save_raw = TRUE)
> # jsonlite::write_json(res_json, "inst/extdata/journey.json")
> f = system.file(package = "cyclestreets", "extdata/journey.json")
> obj = jsonlite::read_json(f, simplifyVector = TRUE)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Calls: :: ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cyclocomp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/processx/libs/processx.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/processx/libs/processx.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Cyclops’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cymruservices’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: curl
Error: package or namespace load failed for ‘curl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Error: package ‘curl’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘CytobankAPIstats’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: CytobankAPI
Loading required package: curl
Error: package or namespace load failed for ‘curl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Error: package ‘curl’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: GenKern
Loading required package: KernSmooth
Error: package or namespace load failed for ‘KernSmooth’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/KernSmooth/libs/KernSmooth.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/KernSmooth/libs/KernSmooth.so: failed to map segment from shared object
Error: package ‘KernSmooth’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘cytominer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘D3GB’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘d3heatmap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘d3Network’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘D3partitionR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: htmlwidgets
Error: package or namespace load failed for ‘htmlwidgets’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘htmlwidgets’ could not be loaded
Execution halted
Running examples in ‘d3r-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: d3_dep_v3
> ### Title: 'd3.js' Dependency for Version 3
> ### Aliases: d3_dep_v3
> 
> ### ** Examples
> 
> library(d3r)
> library(htmltools)
Error: package or namespace load failed for ‘htmltools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘d3Tree’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: limma
Error: package or namespace load failed for ‘limma’:
 .onLoad failed in loadNamespace() for ‘limma’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/limma/libs/limma.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/limma/libs/limma.so: failed to map segment from shared object
Error: package ‘limma’ could not be loaded
Execution halted
compareModels: no visible binding for global variable ‘fgl’
compareModels: no visible global function definition for ‘rlm’
compareModels: no visible global function definition for ‘lm’
compareModels: no visible global function definition for ‘predict’
compareModels: no visible global function definition for ‘resid’
plotSampDist: no visible global function definition for ‘par’
plotSampDist: no visible global function definition for ‘density’
plotSampDist: no visible global function definition for ‘plot’
plotSampDist: no visible global function definition for ‘lines’
plotSampDist: no visible global function definition for ‘legend’
plotSampDist: no visible global function definition for ‘qqnorm’
plotSampDist: no visible global function definition for ‘points’
plotSampDist: no visible global function definition for ‘mtext’
simulateSampDist: no visible binding for global variable ‘rnorm’
Undefined global functions or variables:
  density fgl legend lines lm mtext par plot points predict qqnorm
  resid rlm rnorm
Consider adding
  importFrom("graphics", "legend", "lines", "mtext", "par", "plot",
             "points")
  importFrom("stats", "density", "lm", "predict", "qqnorm", "resid",
             "rnorm")
to your NAMESPACE file.
Running examples in ‘DAAGxtras-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: compareModels
> ### Title: Compare accuracy of alternative classification methods
> ### Aliases: compareModels
> ### Keywords: statistics multivariate
> 
> ### ** Examples
> 
> library(MASS)
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Warning: namespace ‘ggplot2’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘ggplot2’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘ggplot2’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘ggplot2’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘ggplot2’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘ggplot2’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Warning: namespace ‘ggplot2’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘ggplot2’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘ggplot2’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘ggplot2’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘ggplot2’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘ggplot2’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Running examples in ‘dabestr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: dabest
> ### Title: Differences between Groups with Bootstrap Confidence Intervals
> ### Aliases: dabest
> 
> ### ** Examples
> 
> 
> # Performing unpaired (two independent groups) analysis.
> unpaired_mean_diff <- dabest(iris, Species, Petal.Width,
+                              idx = c("setosa", "versicolor"),
+                              paired = FALSE)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: dabest ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘bootstrap-confidence-intervals.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘DACF-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DAC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘daewr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘daff’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Package in Depends field not imported from: ‘s20x’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Rd file 'intPlot.Rd':
  \usage lines wider than 90 characters:
      intPlot(y, fac1 = NULL, fac2 = NULL, xlab = NULL, xlab2 = NULL, ylab = NULL, data.order=TRUE, exlim=0.1, jitter=0.02, conf.level=0.95, ... [TRUNCATED]
      intPlot(y, data, xlab = NULL, xlab2 = NULL, ylab = NULL, data.order = TRUE, exlim=0.1, jitter=0.02, conf.level=0.95, interval.type="tu ... [TRUNCATED]

These lines will be truncated in the PDF manual.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dagitty’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
allCombs: no visible global function definition for ‘combn’
brute.search: no visible global function definition for ‘na.omit’
dag.draw: no visible global function definition for ‘plot’
dag.draw: no visible global function definition for ‘text’
dag.init: no visible global function definition for
  ‘installed.packages’
dag.legend: no visible global function definition for ‘text’
dag.letter: no visible global function definition for ‘text’
dag.move: no visible global function definition for ‘identify’
dag.move: no visible global function definition for ‘locator’
dag.sim: no visible global function definition for ‘rnorm’
dag.sim: no visible global function definition for ‘rbinom’
dag.sim : <anonymous>: no visible global function definition for
  ‘rbinom’
garrows: no visible global function definition for ‘arrows’
smoothArc: no visible global function definition for ‘points’
summary_dagRdag: no visible global function definition for ‘na.omit’
viv: no visible global function definition for ‘na.omit’
write.paths: no visible global function definition for ‘text’
Undefined global functions or variables:
  arrows combn identify installed.packages locator na.omit plot points
  rbinom rnorm text
Consider adding
  importFrom("graphics", "arrows", "identify", "locator", "plot",
             "points", "text")
  importFrom("stats", "na.omit", "rbinom", "rnorm")
  importFrom("utils", "combn", "installed.packages")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Error: package or namespace load failed for ‘Daim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DAISIE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deSolve/libs/deSolve.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deSolve/libs/deSolve.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: relations
Error: package or namespace load failed for ‘relations’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sets/libs/sets.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/sets/libs/sets.so: failed to map segment from shared object
Error: package ‘relations’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DALEX’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dalmatian’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DALY’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DALY/libs/DALY.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DALY/libs/DALY.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DamiaNN’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: geiger
Loading required package: ape
Error: package or namespace load failed for ‘ape’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘ape’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: behavr
Loading required package: data.table
Error: package or namespace load failed for ‘data.table’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Error: package ‘data.table’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dams’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DAP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DAP/libs/DAP.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DAP/libs/DAP.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Workflow.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘darksky’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: adegenet
Loading required package: ade4
Error: package or namespace load failed for ‘ade4’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘ade4’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘darts’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/darts/libs/darts.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/darts/libs/darts.so: failed to map segment from shared object
Execution halted
dashboard_open: no visible global function definition for ‘write.csv’
dashboard_open: no visible global function definition for
  ‘capture.output’
dctable: no visible global function definition for ‘capture.output’
Undefined global functions or variables:
  capture.output write.csv
Consider adding
  importFrom("utils", "capture.output", "write.csv")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘data360r’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DatabaseConnectorJars’:
 .onLoad failed in loadNamespace() for ‘DatabaseConnectorJars’, details:
  call: NULL
  error: .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DatabaseConnector’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DatabionicSwarm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
datadict.profile: no visible global function definition for
  ‘txtProgressBar’
datadict.profile: no visible global function definition for
  ‘setTxtProgressBar’
datadict_profile: no visible global function definition for
  ‘txtProgressBar’
datadict_profile: no visible global function definition for
  ‘setTxtProgressBar’
heatmap.quality: no visible global function definition for
  ‘colorRampPalette’
heatmap.quality: no visible global function definition for ‘heatmap’
heatmap_quality: no visible global function definition for
  ‘colorRampPalette’
heatmap_quality: no visible global function definition for ‘heatmap’
is.oneOf: no visible global function definition for ‘read.csv’
is_one_of: no visible global function definition for ‘read.csv’
pkg.version: no visible global function definition for ‘citation’
pkg_version: no visible global function definition for ‘citation’
ruleCoverage: no visible global function definition for ‘dotchart’
ruleCoverage: no visible global function definition for ‘abline’
rule_coverage: no visible global function definition for ‘dotchart’
rule_coverage: no visible global function definition for ‘abline’
scoreSum: no visible global function definition for ‘plot’
score_sum: no visible global function definition for ‘plot’
shortSummary: no visible global function definition for ‘sd’
short_summary: no visible global function definition for ‘sd’
Undefined global functions or variables:
  abline citation colorRampPalette dotchart heatmap plot read.csv sd
  setTxtProgressBar txtProgressBar
Consider adding
  importFrom("grDevices", "colorRampPalette")
  importFrom("graphics", "abline", "dotchart", "plot")
  importFrom("stats", "heatmap", "sd")
  importFrom("utils", "citation", "read.csv", "setTxtProgressBar",
             "txtProgressBar")
to your NAMESPACE file.
Running examples in ‘datacheck-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: datadict.profile
> ### Title: Create a data quality profile (main function)
> ### Aliases: datadict.profile
> 
> ### ** Examples
> 
> library(stringr)
Error: package or namespace load failed for ‘stringr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DataClean’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DataCombine’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dataCompareR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/markdown/libs/markdown.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/markdown/libs/markdown.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘datadigest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘datadogr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Package suggested but not available for checking: ‘Rhipe’
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘datadr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: gWidgets2
Loading required package: digest
Error: package or namespace load failed for ‘digest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘digest’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DataExplorer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘datafsm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DataGraph’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: readxl
Error: package or namespace load failed for ‘readxl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘readxl’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: DBI
Error: package or namespace load failed for ‘datamap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/datamap/libs/datamap.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/datamap/libs/datamap.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘datamaps’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘dataMeta-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: build_dict
> ### Title: Build a data dictionary for a dataset.
> ### Aliases: build_dict
> 
> ### ** Examples
> 
> # example original data set for which a dictionary will be made
> data("esoph")
> my.data <- esoph
> 
> # Linker: Add description for each variable names and variable type
> variable_description <- c("age group in years", "alcohol consumption in gm/day", 
+ "tobacco consumption in gm/day", "number of cases (showing a range)", 
+ "number of controls (showing range)")
> 
> variable_type <- c(0, 0, 0, 0, 0)
> linker <- build_linker(my.data = my.data, variable_description = variable_description, 
+ variable_type = variable_type)
> linker
   var_name                           var_desc var_type
1     agegp                 age group in years        0
2     alcgp      alcohol consumption in gm/day        0
3     tobgp      tobacco consumption in gm/day        0
4    ncases  number of cases (showing a range)        0
5 ncontrols number of controls (showing range)        0
> 
> # Data dictionary
> # For this data set, no further option description is needed.
> dictionary <- build_dict(my.data = my.data, linker = linker, option_description = NULL, 
+ prompt_varopts = FALSE)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: build_dict ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘dataMeta_Vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dataonderivatives’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dataone’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DataPackageR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/backports/libs/backports.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/backports/libs/backports.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘datapack’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘how-to-datapasta.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
checkDataQuality: no visible binding for global variable ‘quantile’
checkDataQuality: no visible global function definition for ‘write.csv’
Undefined global functions or variables:
  quantile write.csv
Consider adding
  importFrom("stats", "quantile")
  importFrom("utils", "write.csv")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dataRetrieval’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error in loadVignetteBuilder(vigns$pkgdir) : 
  vignette builder ‘car’ not found
Calls: buildVignettes -> loadVignetteBuilder
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Datasaurus.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘datasets.load’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DatAssim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘datastepr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lazyeval/libs/lazyeval.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lazyeval/libs/lazyeval.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Introduction_to_datasus.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘data.table’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘data.tree’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: deldir
Error: package or namespace load failed for ‘deldir’:
 .onLoad failed in loadNamespace() for ‘deldir’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deldir/libs/deldir.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deldir/libs/deldir.so: failed to map segment from shared object
Error: package ‘deldir’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dataverse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dataview’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DataVisualizations’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > "data.world-r
  + Copyright 2018 data.world, Inc.
  + 
  + Licensed under the Apache License, Version 2.0 (the \"License\");
  + you may not use this file except in compliance with the License.
  + 
  + You may obtain a copy of the License at
  + http://www.apache.org/licenses/LICENSE-2.0
  + 
  + Unless required by applicable law or agreed to in writing, software
  + distributed under the License is distributed on an \"AS IS\" BASIS,
  + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
  + implied. See the License for the specific language governing
  + permissions and limitations under the License.
  + 
  + This product includes software developed at data.world, Inc.
  + https://data.world"
  [1] "data.world-r\nCopyright 2018 data.world, Inc.\n\nLicensed under the Apache License, Version 2.0 (the \"License\");\nyou may not use this file except in compliance with the License.\n\nYou may obtain a copy of the License at\nhttp://www.apache.org/licenses/LICENSE-2.0\n\nUnless required by applicable law or agreed to in writing, software\ndistributed under the License is distributed on an \"AS IS\" BASIS,\nWITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or\nimplied. See the License for the specific language governing\npermissions and limitations under the License.\n\nThis product includes software developed at data.world, Inc.\nhttps://data.world"
  > 
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘query.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘date’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/date/libs/date.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/date/libs/date.so: failed to map segment from shared object
Execution halted
Depends: includes the non-default packages:
  'xtable', 'akima', 'R.oo', 'R.methodsS3', 'matlab', 'lattice',
  'locfit', 'grid'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: xtable
Loading required package: akima
Error: package or namespace load failed for ‘akima’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘akima’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: aoos
Error: package or namespace load failed for ‘dat’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Running ‘run_tests.r’ [0s/0s]
Running the tests in ‘tests/run_tests.r’ failed.
Complete output:
  > # Run all unit tests
  > 
  > # This is a wrapper around all the tests specified
  > # in the tests/testthat directory. These tests are visible
  > # to users and serve as small examples as well.
  > testthat::test_check("daymetr")
  Error in dyn.load(file, DLLpath = DLLpath, ...) : 
    unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Calls: :: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘daymetr-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dbarts’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dbarts/libs/dbarts.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dbarts/libs/dbarts.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: RMySQL
Loading required package: DBI
Error: package or namespace load failed for ‘RMySQL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RMySQL/libs/RMySQL.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RMySQL/libs/RMySQL.so: failed to map segment from shared object
Error: package ‘RMySQL’ could not be loaded
Execution halted
dbEmpLikeGOF: no visible global function definition for ‘runif’
dbEmpLikeGOF: no visible global function definition for ‘var’
dbEmpLikeGOF: no visible global function definition for ‘rnorm’
emplikeGOFinternal: no visible global function definition for ‘var’
getCutoff: no visible binding for global variable ‘unifCut’
getCutoff: no visible binding for global variable ‘normCut’
getCutoff: no visible global function definition for ‘lm’
getCutoff: no visible binding for global variable ‘distEqCut’
getPval: no visible binding for global variable ‘unifCut’
getPval: no visible binding for global variable ‘normCut’
getPval: no visible global function definition for ‘lm’
getPval: no visible binding for global variable ‘distEqCut’
helperPval: no visible global function definition for ‘lm’
returnCutoff: no visible global function definition for ‘quantile’
testfun2: no visible global function definition for ‘runif’
testfun2: no visible global function definition for ‘rnorm’
Undefined global functions or variables:
  distEqCut lm normCut quantile rnorm runif unifCut var
Consider adding
  importFrom("stats", "lm", "quantile", "rnorm", "runif", "var")
to your NAMESPACE file.
computePval: no visible global function definition for ‘lm’
computeQhat: no visible global function definition for ‘pnorm’
dbELnorm: no visible global function definition for ‘rnorm’
getCutoffTableThree: no visible global function definition for ‘lm’
getCutoffTableTwo: no visible global function definition for ‘lm’
getCutoffValue: no visible global function definition for ‘lm’
helperGetTstat: no visible global function definition for ‘rnorm’
returnCutoffValue: no visible global function definition for ‘rnorm’
returnCutoffValue: no visible global function definition for ‘quantile’
varianceEstimator: no visible global function definition for ‘density’
varianceEstimator: no visible global function definition for ‘ecdf’
Undefined global functions or variables:
  density ecdf lm pnorm quantile rnorm
Consider adding
  importFrom("stats", "density", "ecdf", "lm", "pnorm", "quantile",
             "rnorm")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DBEST’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dbfaker’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Rfit
Error: package or namespace load failed for ‘Rfit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rfit/libs/Rfit.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rfit/libs/Rfit.so: failed to map segment from shared object
Error: package ‘Rfit’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: fdrtool
Error: package or namespace load failed for ‘fdrtool’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/fdrtool/libs/fdrtool.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/fdrtool/libs/fdrtool.so: failed to map segment from shared object
Error: package ‘fdrtool’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DBHC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dbhydroR’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Running examples in ‘DBI-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: DBI-package
> ### Title: DBI: R Database Interface
> ### Aliases: DBI DBI-package
> 
> ### ** Examples
> 
> RSQLite::SQLite()
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: :: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘DBI-1.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DBItest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DBKGrad’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/minpack.lm/libs/minpack.lm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/minpack.lm/libs/minpack.lm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dblcens’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dblcens/libs/dblcens.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dblcens/libs/dblcens.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dblr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: spatstat
Loading required package: spatstat.data
Error: package or namespace load failed for ‘spatstat.data’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/spatstat.utils/libs/spatstat.utils.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/spatstat.utils/libs/spatstat.utils.so: failed to map segment from shared object
Error: package ‘spatstat.data’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dbplot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dbplyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dbscan’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘dbx-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: dbxConnect
> ### Title: Create a database connection
> ### Aliases: dbxConnect
> 
> ### ** Examples
> 
> # SQLite
> db <- dbxConnect(adapter="sqlite", dbname=":memory:")
Error in requireLib("RSQLite") : Could not load adapter: RSQLite
Calls: dbxConnect -> findAdapter -> requireLib
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DCA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DCD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: oro.nifti
Error: package or namespace load failed for ‘oro.nifti’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Error: package ‘oro.nifti’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DCGL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Introduction_to_DCG.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Loading required package: sp
Error: package or namespace load failed for ‘sp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘sp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: boot
Loading required package: spdep
Loading required package: sp
Error: package or namespace load failed for ‘sp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘sp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: dclone
Loading required package: coda
Error: package or namespace load failed for ‘coda’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘coda’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dcmodify’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/yaml/libs/yaml.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/yaml/libs/yaml.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tcltk
Loading required package: gWidgets
Error: package or namespace load failed for ‘DCM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Loading required package: energy
Error: package or namespace load failed for ‘energy’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘energy’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dcurver’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: lmtest
Loading required package: zoo
Error: package or namespace load failed for ‘zoo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘zoo’ could not be loaded
Execution halted
Running examples in ‘ddeploy-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: duke_deploy
> ### Title: Deploy model using REST API
> ### Aliases: duke_deploy
> 
> ### ** Examples
> 
> duke_auth <- list(
+ user_name = "try_it",
+ api_key   = "db1542b66f16aba5768d8a19c27dec4facf9168a",
+ endpoint = "/api/v1.0"
+ )
> example_data <- as.data.frame(cbind(gl(3,50),rnorm(150)));names(example_data) <- c("x","y")
> example_fit  <- lm(y~x,data=example_data)
> duke_deploy(auth_details=duke_auth,model_object=example_fit)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mime/libs/mime.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mime/libs/mime.so: failed to map segment from shared object
Calls: duke_deploy ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DDHFm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Daystar.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DDIwR’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Running examples in ‘DDoutlier-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: INFLO
> ### Title: Influenced Outlierness (INFLO) algorithm
> ### Aliases: INFLO
> ### Keywords: ~kwd1 ~kwd2
> 
> ### ** Examples
> 
> # Create dataset
> X <- iris[,1:4]
> 
> # Find outliers by setting an optional k
> outlier_score <- INFLO(dataset=X, k=10)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: INFLO ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Running examples in ‘ddpcr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: calculate_neg_freq_single
> ### Title: Calculate negative frequency of a single well
> ### Aliases: calculate_neg_freq_single
> ### Keywords: internal
> 
> ### ** Examples
> 
> file <- system.file("sample_data", "small", "analyzed_pnpp.rds", package = "ddpcr")
> plate <- load_plate(file)
> plate %>% calculate_neg_freq_single("A05")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: %>% ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘algorithm.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DDPGPSurv’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: irlba
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ddsPLS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: orthopolynom
Loading required package: polynom
Loading required package: evd
Error: package or namespace load failed for ‘evd’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/evd/libs/evd.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/evd/libs/evd.so: failed to map segment from shared object
Error: package ‘evd’ could not be loaded
Execution halted
Running examples in ‘deadband-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: deadbandBD
> ### Title: deadbandBD Function
> ### Aliases: deadbandBD
> ### Keywords: BD
> 
> ### ** Examples
> 
> deadbandBD(rnorm(40, mean = 0, sd = 1),0.01,20,2)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Calls: deadbandBD ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘deal’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deal/libs/deal.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deal/libs/deal.so: failed to map segment from shared object
Execution halted
ifft: no visible global function definition for ‘fft’
lines.deamer: no visible global function definition for ‘lines’
plot.deamer: no visible global function definition for ‘plot’
rlaplace: no visible global function definition for ‘runif’
Undefined global functions or variables:
  fft lines plot runif
Consider adding
  importFrom("graphics", "lines", "plot")
  importFrom("stats", "fft", "runif")
to your NAMESPACE file.
Error in re-building vignettes:
  ...
Error: processing vignette ‘debugr.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
compare.relimp: no visible global function definition for ‘qchisq’
compare.relimp: no visible global function definition for ‘pchisq’
plot_transition: no visible global function definition for ‘dnorm’
plot_transition: no visible global function definition for ‘par’
plot_transition: no visible global function definition for ‘plot’
plot_transition: no visible global function definition for ‘lines’
plot_transition: no visible global function definition for ‘plogis’
plot_transition: no visible global function definition for ‘axis’
plot_transition: no visible global function definition for ‘mtext’
relative.importance: no visible global function definition for ‘glm’
relative.importance: no visible global function definition for ‘sd’
relative.importance : tr.pr: no visible global function definition for
  ‘pnorm’
relative.importance: no visible global function definition for ‘vcov’
Undefined global functions or variables:
  axis dnorm glm lines mtext par pchisq plogis plot pnorm qchisq sd
  vcov
Consider adding
  importFrom("graphics", "axis", "lines", "mtext", "par", "plot")
  importFrom("stats", "dnorm", "glm", "pchisq", "plogis", "pnorm",
             "qchisq", "sd", "vcov")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘decido’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DecisionAnalysis’:
 .onLoad failed in loadNamespace() for ‘Cairo’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Cairo/libs/Cairo.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Cairo/libs/Cairo.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘decisionSupport’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Kendall/libs/Kendall.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Kendall/libs/Kendall.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘deckgl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: randomizr
Error: package or namespace load failed for ‘randomizr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/randomizr/libs/randomizr.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/randomizr/libs/randomizr.so: failed to map segment from shared object
Error: package ‘randomizr’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘v.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘decoder’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/backports/libs/backports.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/backports/libs/backports.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘decomposedPSF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘decompr.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘decon’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/decon/libs/decon.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/decon/libs/decon.so: failed to map segment from shared object
Execution halted
Running examples in ‘deconstructSigs-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plotSignatures
> ### Title: Plots the result from whichSignatures()
> ### Aliases: plotSignatures
> 
> ### ** Examples
> 
> plotSignatures(example.output, sub = "example")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: plotSignatures ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘deconvolution.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DecorateR’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Deducer
Loading required package: ggplot2
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘ggplot2’ could not be loaded
Execution halted
Depends: includes the non-default packages:
  'Deducer', 'psych', 'GPArotation', 'mvnormtest', 'irr', 'klaR'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Depends: includes the non-default packages:
  'JavaGD', 'Deducer', 'sp', 'maptools', 'OpenStreetMap', 'scales',
  'rgdal'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘UScensus2010’
A package should be listed in only one of these fields.
Non-standard file/directory found at top level:
  ‘org’
Loading this package had a fatal error status code 1
Loading log:
Loading required package: JavaGD
Error: package or namespace load failed for ‘JavaGD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/JavaGD/libs/JavaGD.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/JavaGD/libs/JavaGD.so: failed to map segment from shared object
Error: package ‘JavaGD’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: editrules
Loading required package: igraph
Error: package or namespace load failed for ‘igraph’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Error: package ‘igraph’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘deductive’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lintools/libs/lintools.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lintools/libs/lintools.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘deepboost’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘deeplr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
binary.state: no visible global function definition for ‘runif’
dbn.dnn.train: no visible global function definition for ‘runif’
dropout.mask: no visible global function definition for ‘runif’
nn.train: no visible global function definition for ‘runif’
rbm.train: no visible global function definition for ‘runif’
sae.dnn.train: no visible global function definition for ‘runif’
show.digit: no visible global function definition for ‘gray’
show.digit: no visible global function definition for ‘image’
Undefined global functions or variables:
  gray image runif
Consider adding
  importFrom("grDevices", "gray")
  importFrom("graphics", "image")
  importFrom("stats", "runif")
to your NAMESPACE file.
DEEPR : perm_function: no visible global function definition for ‘head’
DEEPR : perm_function: no visible global function definition for ‘tail’
simCophy: no visible global function definition for ‘rpois’
simCophy: no visible global function definition for ‘rmultinom’
Undefined global functions or variables:
  head rmultinom rpois tail
Consider adding
  importFrom("stats", "rmultinom", "rpois")
  importFrom("utils", "head", "tail")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘define’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘deflateBR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘deformula’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deformula/libs/deformula.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deformula/libs/deformula.so: failed to map segment from shared object
Execution halted
kern: no visible global function definition for ‘var’
kern: no visible global function definition for ‘dnorm’
pdeg: no visible global function definition for ‘var’
pdeg: no visible global function definition for ‘dnorm’
z.b: no visible binding for global variable ‘var’
z.s: no visible binding for global variable ‘var’
Undefined global functions or variables:
  dnorm var
Consider adding
  importFrom("stats", "dnorm", "var")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘deGradInfer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘degreenet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/degreenet/libs/degreenet.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/degreenet/libs/degreenet.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dejaVu’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Delaporte’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Delaporte/libs/Delaporte.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Delaporte/libs/Delaporte.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DelayedEffect.Design’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘deldir’:
 .onLoad failed in loadNamespace() for ‘deldir’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deldir/libs/deldir.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deldir/libs/deldir.so: failed to map segment from shared object
Execution halted
Found an obsolete/platform-specific call in the following function:
  ‘dr_df’
Found the platform-specific device:
  ‘x11’
dev.new() is the preferred way to open a new device, in the unlikely
event one is needed.
Running examples in ‘deltar-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: dr_pair
> ### Title: Calculate Delta R from a pair of dates
> ### Aliases: dr_pair
> 
> ### ** Examples
> 
> ## Calculation of Delta R for the last pair (pair 9)
> ## from the "adak" data set (see Khasanov et al., 2015
> ## for details). Terrestrial date of this pair is 835 ± 20
> ## (laboratory code NUTA2-20937), marine date 1765 ± 20
> ## (laboratory code NUTA2-20553).
> 
> # Compute and store the results in the new object
> p9 <- dr_pair(dates = c(835, 20, 1765, 20), name = "Adak, pair 9")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Bchron/libs/Bchron.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Bchron/libs/Bchron.so: failed to map segment from shared object
Calls: dr_pair ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘delt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/denpro/libs/denpro.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/denpro/libs/denpro.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Demerelate’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Bootstrapping.CI: no visible global function definition for ‘quantile’
D.Jost: no visible global function definition for ‘read.table’
D.Jost: no visible global function definition for ‘write.table’
Dv.locis.corrected.calc: no visible global function definition for
  ‘p.adjust’
Gst.Nei: no visible global function definition for ‘read.table’
Gst.Nei: no visible global function definition for ‘write.table’
H.out: no visible global function definition for ‘write.table’
Hardy.calc: no visible global function definition for ‘chisq.test’
critical.ci.values: no visible global function definition for
  ‘quantile’
inputformat: no visible global function definition for ‘read.table’
inputformat: no visible global function definition for ‘write.table’
over.all.pops: no visible global function definition for ‘write.table’
p.value.correcture: no visible global function definition for
  ‘p.adjust’
pair.pops: no visible global function definition for ‘write.table’
Undefined global functions or variables:
  chisq.test p.adjust quantile read.table write.table
Consider adding
  importFrom("stats", "chisq.test", "p.adjust", "quantile")
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.

Found the following calls to attach():
File ‘DEMEtics/R/inputformat.r’:
  attach(y)
See section ‘Good practice’ in ‘?attach’.
DEMIPathway: no visible global function definition for ‘dhyper’
DEMIPathway: no visible global function definition for ‘p.adjust’
calcHypergeoExon: no visible global function definition for ‘dhyper’
calcHypergeoProb: no visible global function definition for ‘dhyper’
demi: no visible global function definition for ‘write.table’
demi.t.test: no visible global function definition for ‘t.test’
demi.wilcox.test: no visible global function definition for
  ‘wilcox.test’
demi.wilcox.test.fast: no visible global function definition for
  ‘wilcox.test’
demiequal: no visible global function definition for ‘wilcox.test’
wprob: no visible global function definition for ‘combn’
diffexp,DEMIDiff: no visible global function definition for ‘median’
diffexp,DEMIDiff: no visible global function definition for ‘p.adjust’
loadAnnotation,DEMIExperiment-environment: no visible global function
  definition for ‘data’
loadBlat,DEMIExperiment-environment: no visible global function
  definition for ‘data’
loadCytoband,DEMIExperiment-environment: no visible global function
  definition for ‘data’
loadPathway,DEMIExperiment-environment: no visible global function
  definition for ‘data’
Undefined global functions or variables:
  combn data dhyper median p.adjust t.test wilcox.test write.table
Consider adding
  importFrom("stats", "dhyper", "median", "p.adjust", "t.test",
             "wilcox.test")
  importFrom("utils", "combn", "data", "write.table")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DemoDecomp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: forecast
Error: package or namespace load failed for ‘forecast’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘forecast’ could not be loaded
Execution halted
Running examples in ‘demoKde-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: demoKde-package
> ### Title: Kernel density estimation demonstration and exploration
> ### Aliases: demoKde-package demoKde
> ### Keywords: package
> 
> ### ** Examples
> 
> if(require("graphics")) {
+   with(MASS::Boston, {
+       Criminality <- log(crim)
+       hist(Criminality, freq=FALSE, main="", border="grey", las=1)
+       lines(stats::density(Criminality), col="skyblue", lwd=8)
+       lines(kde(Criminality))
+       lines(kde(Criminality, kernel = kernelUniform), col="red")
+       rug(jitter(Criminality), col="blue")
+       legend("topright", c("density histogram",
+         "KDE gaussian (denstiy)", "KDE gaussian (kde)",
+         "KDE rectangular (kde)"), lty = "solid", lwd=c(1,8,1,1),
+         col=c("grey", "skyblue", "black", "red"), bty="n")
+   })
+ }
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Calls: with ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘demu’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dendextend’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running ‘test-all.R’ [0s/0s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > # Run all tests for gphys package
  > #  
  > # Author: jefferis
  > ###############################################################################
  > 
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dendroTools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: gclus
Loading required package: cluster
Error: package or namespace load failed for ‘cluster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Error: package ‘cluster’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘example_figures.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error in loadVignetteBuilder(vigns$pkgdir) : 
  vignette builder ‘rmarkdown’ not found
Calls: buildVignettes -> loadVignetteBuilder
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘denoiseR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘denovolyzeR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘denpro’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/denpro/libs/denpro.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/denpro/libs/denpro.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘densityClust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/FNN/libs/FNN.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/FNN/libs/FNN.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: clime
Loading required package: lpSolve
Error: package or namespace load failed for ‘lpSolve’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lpSolve/libs/lpSolve.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lpSolve/libs/lpSolve.so: failed to map segment from shared object
Error: package ‘lpSolve’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘densratio.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘denstrip’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Error: package or namespace load failed for ‘DEoptim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DEoptim/libs/DEoptim.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DEoptim/libs/DEoptim.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DEploid’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Package suggested but not available for checking: ‘Rdonlp2’
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘depth.plot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: abind
Loading required package: circular
Error: package or namespace load failed for ‘circular’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘circular’ could not be loaded
Execution halted
MBD: no visible global function definition for ‘par’
MBD: no visible global function definition for ‘gray’
MBD: no visible global function definition for ‘matplot’
MBD: no visible global function definition for ‘polygon’
MBD: no visible global function definition for ‘lines’
MBD: no visible global function definition for ‘legend’
MBD: no visible global function definition for ‘matlines’
R.test: no visible global function definition for ‘runif’
R.test: no visible global function definition for ‘wilcox.test’
centralPlot: no visible global function definition for ‘par’
centralPlot: no visible global function definition for
  ‘colorRampPalette’
centralPlot: no visible global function definition for ‘matplot’
centralPlot: no visible global function definition for ‘matlines’
centralPlot: no visible global function definition for ‘legend’
scalecurve: no visible global function definition for ‘plot’
scalecurve: no visible global function definition for ‘lines’
scalecurve: no visible global function definition for ‘legend’
tmean: no visible global function definition for ‘matplot’
tmean: no visible global function definition for ‘matlines’
tmean: no visible global function definition for ‘lines’
tmean: no visible global function definition for ‘legend’
tmean: no visible global function definition for ‘colorRampPalette’
Undefined global functions or variables:
  colorRampPalette gray legend lines matlines matplot par plot polygon
  runif wilcox.test
Consider adding
  importFrom("grDevices", "colorRampPalette", "gray")
  importFrom("graphics", "legend", "lines", "matlines", "matplot", "par",
             "plot", "polygon")
  importFrom("stats", "runif", "wilcox.test")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dequer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dequer/libs/dequer.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dequer/libs/dequer.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘derivmkts’:
 .onLoad failed in loadNamespace() for ‘mnormt’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘desc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/backports/libs/backports.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/backports/libs/backports.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DescribeDisplay’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘DescriptiveStats.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘descriptr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘descr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/descr/libs/descr.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/descr/libs/descr.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘descstatsr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘desctable’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DescToolsAddIns’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Package suggested but not available for checking: ‘RDCOMClient’
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DescTools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
arrayUpdate : pairUpdate: no visible global function definition for
  ‘runif’
conditionUpdate: no visible global function definition for ‘runif’
designGG: no visible global function definition for ‘runif’
experimentDesignTable: no visible global function definition for
  ‘write.csv’
plotAllScores: no visible global function definition for ‘png’
plotAllScores: no visible global function definition for ‘par’
plotAllScores: no visible global function definition for ‘plot’
plotAllScores: no visible global function definition for ‘text’
plotAllScores: no visible global function definition for ‘dev.off’
Undefined global functions or variables:
  dev.off par plot png runif text write.csv
Consider adding
  importFrom("grDevices", "dev.off", "png")
  importFrom("graphics", "par", "plot", "text")
  importFrom("stats", "runif")
  importFrom("utils", "write.csv")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: DeclareDesign
Loading required package: randomizr
Error: package or namespace load failed for ‘randomizr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/randomizr/libs/randomizr.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/randomizr/libs/randomizr.so: failed to map segment from shared object
Error: package ‘randomizr’ could not be loaded
Execution halted
Packages which this enhances but not available for checking:
  'gurobi', 'Rmosek'
Error in re-building vignettes:
  ...

Error: processing vignette ‘desirability.Rnw’ failed with diagnostics:
 chunk 4 (label = conversionPlot) 
Error : package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: loglognorm
Error: package or namespace load failed for ‘loglognorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/loglognorm/libs/loglognorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/loglognorm/libs/loglognorm.so: failed to map segment from shared object
Error: package ‘loglognorm’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘Gene_ranking.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DESnowball’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘deSolve’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deSolve/libs/deSolve.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/deSolve/libs/deSolve.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘desplot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘detector-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: detect
> ### Title: Detect if a data object contains PII.
> ### Aliases: detect detect.character detect.data.frame detect.default
> 
> ### ** Examples
> 
> # atomic vectors
> detect(letters)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Calls: detect ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Formula
Loading required package: stats4
Loading required package: pbapply
Error: package or namespace load failed for ‘detect’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘detectRUNS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: robustbase
Error: package or namespace load failed for ‘robustbase’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/robustbase/libs/robustbase.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/robustbase/libs/robustbase.so: failed to map segment from shared object
Error: package ‘robustbase’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tcltk
Loading required package: dplR
Error: package or namespace load failed for ‘dplR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘dplR’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘detrendr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DetR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/robustbase/libs/robustbase.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/robustbase/libs/robustbase.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ash
Error: package or namespace load failed for ‘ash’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ash/libs/ash.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ash/libs/ash.so: failed to map segment from shared object
Error: package ‘ash’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘detzrcr-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘devEMF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/devEMF/libs/devEMF.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/devEMF/libs/devEMF.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘devFunc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: DESeq2
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
    rownames, sapply, setdiff, sort, table, tapply, union, unique,
    unsplit, which, which.max, which.min

Error: package or namespace load failed for ‘S4Vectors’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/S4Vectors/libs/S4Vectors.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/S4Vectors/libs/S4Vectors.so: failed to map segment from shared object
Error: package ‘S4Vectors’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘guiaDelUsuario.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘devtools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: dexter
Loading required package: RSQLite
Error: package or namespace load failed for ‘RSQLite’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘RSQLite’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dexterMST’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: RSQLite
Error: package or namespace load failed for ‘RSQLite’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘RSQLite’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: rjson
Error: package or namespace load failed for ‘rjson’:
 .onLoad failed in loadNamespace() for ‘rjson’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rjson/libs/rjson.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rjson/libs/rjson.so: failed to map segment from shared object
Error: package ‘rjson’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dfcomb’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dfcomb/libs/dfcomb.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dfcomb/libs/dfcomb.so: failed to map segment from shared object
Execution halted
Found the following apparent S3 methods exported but not registered:
  plot.mtd plot.sim print.crmsize print.dxcrm print.mtd print.sim
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DFIT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dfmta’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dfmta/libs/dfmta.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dfmta/libs/dfmta.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Dforest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dfphase1’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dga’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/chron/libs/chron.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/chron/libs/chron.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DGCA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tcltk
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DGM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dgof’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dgof/libs/dgof.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dgof/libs/dgof.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: dgodata
Loading required package: rstan
Loading required package: ggplot2
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘ggplot2’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DHARMa’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘dhh-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dHSIC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘DHS.rates-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: chmort
> ### Title: Calculates childhood mortality rates based on the Demographic
> ###   and Health Surveys (DHS).
> ### Aliases: chmort
> 
> ### ** Examples
> 
> # Calculate five-year children mortality rates based on ADBR70 data
> 
> data("ADBR70")
> chmort(
+  ADBR70,
+  JK = "Yes"
+ )
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/matrixStats/libs/matrixStats.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/matrixStats/libs/matrixStats.so: failed to map segment from shared object
Calls: chmort ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘DHS.rates.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘diagis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: meta
Loading 'meta' package (version 4.9-3).
Type 'help(meta)' for a brief overview.
Error: package or namespace load failed for ‘diagmeta’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘fatdiag.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DiagrammeR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DiagrammeRsvg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DiallelAnalysisR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: scales
Error: package or namespace load failed for ‘scales’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘scales’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DiceDesign’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DiceDesign/libs/DiceDesign.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DiceDesign/libs/DiceDesign.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: DiceKriging
Error: package or namespace load failed for ‘DiceKriging’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DiceKriging/libs/DiceKriging.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DiceKriging/libs/DiceKriging.so: failed to map segment from shared object
Error: package ‘DiceKriging’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DiceKriging’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DiceKriging/libs/DiceKriging.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DiceKriging/libs/DiceKriging.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘diceR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
dichromat: no visible global function definition for ‘col2rgb’
dichromat: no visible global function definition for ‘predict’
dichromat: no visible global function definition for ‘rgb’
Undefined global functions or variables:
  col2rgb predict rgb
Consider adding
  importFrom("grDevices", "col2rgb", "rgb")
  importFrom("stats", "predict")
to your NAMESPACE file.
le.pesquisa: no visible global function definition for ‘txtProgressBar’
le.pesquisa: no visible global function definition for ‘type.convert’
le.pesquisa: no visible global function definition for
  ‘setTxtProgressBar’
Undefined global functions or variables:
  setTxtProgressBar txtProgressBar type.convert
Consider adding
  importFrom("utils", "setTxtProgressBar", "txtProgressBar",
             "type.convert")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: foreach
Loading required package: igraph
Error: package or namespace load failed for ‘igraph’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Error: package ‘igraph’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘did’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘didrooRFM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dief’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
L2eV: no visible binding for global variable ‘constants’
L2w: no visible binding for global variable ‘constants’
dielectric: no visible global function definition for ‘new’
dielectric2plot: no visible global function definition for ‘reshape’
eV2L: no visible binding for global variable ‘constants’
t2eV: no visible binding for global variable ‘constants’
Undefined global functions or variables:
  constants new reshape
Consider adding
  importFrom("methods", "new")
  importFrom("stats", "reshape")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Running examples in ‘dielectric-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: AgPalik
> ### Title: AgPalik
> ### Aliases: AgPalik
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(AgPalik)
> str(AgPalik$raw())
'data.frame':	241 obs. of  4 variables:
 $ wavelength: num  0.155 0.207 0.248 0.275 0.31 ...
 $ epsilon   : cplx  1+0i 1+0i 1+0i ...
 $ real      : num  1 1 1 1 1.01 ...
 $ imag      : num  5.84e-06 1.68e-05 3.04e-05 4.42e-05 7.16e-05 ...
> AgPalik$comment
$source
[1] "Silver in the visible, Palik"

$units
[1] "nanometres"

> demo(AgPalik)


	demo(AgPalik)
	---- ~~~~~~~

> library(dielectric)

> library(ggplot2)
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘diezeit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DIFboost’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘diffdf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘dae.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Packages required but not available: 'missMethyl', 'methylumi'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DiffNet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘diffobj’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/diffobj/libs/diffobj.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/diffobj/libs/diffobj.so: failed to map segment from shared object
Execution halted
Running examples in ‘diffpriv-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: sensitivitySampler,DPMech,function,numeric-method
> ### Title: Sensitivity sampler for 'DPMech-class"s.
> ### Aliases: sensitivitySampler,DPMech,function,numeric-method
> 
> ### ** Examples
> 
> ## Simple example with unbounded data hence no global sensitivity.
> f <- function(xs) mean(xs)
> m <- DPMechLaplace(target = f, dims = 1)
> m@sensitivity ## Inf
[1] Inf
> m@gammaSensitivity ## NA as Laplace is naturally eps-DP
[1] NA
> P <- function(n) rnorm(n)
> m <- sensitivitySampler(m, oracle = P, n = 100, gamma = 0.33)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gsl/libs/gsl.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gsl/libs/gsl.so: failed to map segment from shared object
Calls: sensitivitySampler ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘bernstein.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘diffractometry’:
 .onLoad failed in loadNamespace() for ‘diffractometry’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/diffractometry/libs/diffractometry.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/diffractometry/libs/diffractometry.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: stringb
Error: package or namespace load failed for ‘stringb’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/backports/libs/backports.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/backports/libs/backports.so: failed to map segment from shared object
Error: package ‘stringb’ could not be loaded
Execution halted
Unavailable namespace imported from by a ':::' call: ‘diffrprojects’
  See the note in ?`:::` about the use of this operator.
Running examples in ‘diffrprojectswidget-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: dp_prepare_data_table
> ### Title: function for preparing data for tabulation
> ### Aliases: dp_prepare_data_table
> 
> ### ** Examples
> 
> 
> library(diffrprojects)
Loading required package: stringb
Error: package or namespace load failed for ‘stringb’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/backports/libs/backports.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/backports/libs/backports.so: failed to map segment from shared object
Error: package ‘stringb’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘diffr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘diffusionMap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DiffusionRgqd’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DiffusionRimp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DiffusionRjgqd’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘diffusr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DIFlasso’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: CTT
Loading required package: ggplot2
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘ggplot2’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘difR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: penalized
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘survival’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘digest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: maptools
Loading required package: sp
Error: package or namespace load failed for ‘sp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘sp’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘digitize’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jpeg/libs/jpeg.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jpeg/libs/jpeg.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DIME’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DIME/libs/DIME.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DIME/libs/DIME.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: DRR
Loading required package: kernlab
Error: package or namespace load failed for ‘kernlab’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/kernlab/libs/kernlab.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/kernlab/libs/kernlab.so: failed to map segment from shared object
Error: package ‘kernlab’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dina’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘dineq-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: dineq_change_rb
> ### Title: Decomposition of the change in inequality
> ### Aliases: dineq_change_rb
> 
> ### ** Examples
> 
> #Decomposition of the change in income inequality into 4 variables using the Mexican Income
> #data set
> data(mex_inc_2008)
> inequality_change <- dineq_change_rb(formula1=income~hh_structure+education+domicile_size+age_cat,
+ weights1="factor",data1=mex_inc_2008, formula2=income~hh_structure+education+
+ domicile_size+age_cat, weights2="factor",data2=mex_inc_2016)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/survival/libs/survival.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/survival/libs/survival.so: failed to map segment from shared object
Calls: dineq_change_rb ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Running examples in ‘dint-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: first_of_quarter
> ### Title: Get First / Last Day of a Quarter
> ### Aliases: first_of_quarter first_of_quarter.default last_of_quarter
> ###   last_of_quarter.default
> 
> ### ** Examples
> 
> 
> first_of_quarter("2016-06-04")
[1] "2016-04-01"
> last_of_quarter("2016-06-04")
Error in assert_lubridate() : 
  This function requires the package 'lubridate'.You can install it via install.packages('lubridate')
Calls: last_of_quarter -> last_of_quarter.default -> assert_lubridate
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘dint.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DiPs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘diptest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/diptest/libs/diptest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/diptest/libs/diptest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘di’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DirectedClustering’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘DirectEffects.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Directional’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘directlabels’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘directotree’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DIRECT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DIRECT/libs/DIRECT.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DIRECT/libs/DIRECT.so: failed to map segment from shared object
Execution halted
Running examples in ‘dirichletprocess-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: PosteriorClusters
> ### Title: Generate the posterior clusters of a Dirichlet Process
> ### Aliases: PosteriorClusters
> 
> ### ** Examples
> 
> y <- rnorm(10)
> dp <- DirichletProcessGaussian(y)
> dp <- Fit(dp, 5)

  |                                                        
  |                                                  |   0%
  |                                                        
  |----------                                        |  20%
  |                                                        
  |--------------------                              |  40%
  |                                                        
  |------------------------------                    |  60%
  |                                                        
  |----------------------------------------          |  80%
  |                                                        
  |--------------------------------------------------| 100%
> postClusters <- PosteriorClusters(dp)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gtools/libs/gtools.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Calls: PosteriorClusters ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: Formula
Loading required package: rgl
Error: package or namespace load failed for ‘rgl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘rgl’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...

Error: processing vignette ‘dirmcmc_vignette.Rnw’ failed with diagnostics:
 chunk 5 (label = diag) 
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Non-standard file/directory found at top level:
  ‘dirmult.pdf’
nullTest: no visible global function definition for ‘rmultinom’
rdirichlet: no visible global function definition for ‘rgamma’
simPop: no visible global function definition for ‘rnorm’
simPop: no visible global function definition for ‘rmultinom’
Undefined global functions or variables:
  rgamma rmultinom rnorm
Consider adding
  importFrom("stats", "rgamma", "rmultinom", "rnorm")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘discgolf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘disclapmix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
rdisclap: no visible global function definition for ‘runif’
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘disco’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘discord’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘discretecdAlgorithm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
p.discrete.adjust : <anonymous>: no visible global function definition
  for ‘stepfun’
Undefined global functions or variables:
  stepfun
Consider adding
  importFrom("stats", "stepfun")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘discreteRV’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
value: no visible global function definition for ‘qchisq’
Undefined global functions or variables:
  qchisq
Consider adding
  importFrom("stats", "qchisq")
to your NAMESPACE file.
Packages in Depends field not imported from:
  ‘RUnit’ ‘grid’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
mix.distlist.facing.gamma : <anonymous>: no visible global function
  definition for ‘dgamma’
mix.distlist.norm: no visible binding for global variable ‘dnorm’
mix.mle: no visible global function definition for ‘sd’
mix.mle: no visible global function definition for ‘quantile’
mix.mle: no visible global function definition for ‘median’
mix.mle: no visible global function definition for ‘optim’
mix.synthetic.facing.gamma: no visible global function definition for
  ‘runif’
mix.synthetic.facing.gamma: no visible global function definition for
  ‘rgamma’
mix.synthetic.normal: no visible global function definition for ‘runif’
mix.synthetic.normal: no visible global function definition for ‘rnorm’
plot.discrimARTs: no visible global function definition for ‘hist’
plot.discrimARTs: no visible global function definition for ‘points’
plot.discrimARTs: no visible global function definition for ‘lines’
plot.discrimARTs: no visible global function definition for ‘grid.text’
plot.discrimARTs: no visible global function definition for ‘gpar’
Undefined global functions or variables:
  dgamma dnorm gpar grid.text hist lines median optim points quantile
  rgamma rnorm runif sd
Consider adding
  importFrom("graphics", "hist", "lines", "points")
  importFrom("stats", "dgamma", "dnorm", "median", "optim", "quantile",
             "rgamma", "rnorm", "runif", "sd")
to your NAMESPACE file.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘discSurv’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Package which this enhances but not available for checking: ‘INLA’
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘diseasemapping’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘DisimForMixed-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: calcDissimMat
> ### Title: Calculate Dissimilarity Matrix for Mixed Attributes.
> ### Aliases: calcDissimMat
> 
> ### ** Examples
> 
> QualiVars <- data.frame(Qlvar1 = c("A","B","A","C","C","A"), Qlvar2 = c("Q","Q","R","Q","R","Q"))
> QuantVars <- data.frame(Qnvar1 = c(1.5,3.2,4.9,5,2.8,3.1), Qnvar2 = c(4.8,2,1.1,5.8,3.1,2.2))
> DisSimMatCalcd <- calcDissimMat(QualiVars, QuantVars)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: calcDissimMat ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DisImpact’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Rd file 'dualFlashlight.fn.Rd':
  \usage lines wider than 90 characters:
     dualFlashlight.fn(result.df, wellName = "WELL_USAGE", x.name = "mean", y.name = "ssmd", sampleName = "Sample", sampleColor = "black", c ... [TRUNCATED]

Rd file 'imageDesign.fn.Rd':
  \usage lines wider than 90 characters:
     imageDesign.fn(dataOnePlate.df, wellName = NA, rowName, colName, wells = NULL, colors = NULL, title = " ")

Rd file 'imageIntensity.fn.Rd':
  \usage lines wider than 90 characters:
     imageIntensity.fn(data.df, intensityName = NA, plateName = "BARCODE", wellName = "WELL_USAGE", rowName, colName, sampleName = "Sample", ... [TRUNCATED]

Rd file 'plateWellSeries.fn.Rd':
  \usage lines wider than 90 characters:
     plateWellSeries.fn(data.df, intensityName = NA, plateName = "BARCODE", wellName = "WELL_USAGE", rowName, colName, show.wellTypes = NULL ... [TRUNCATED]

These lines will be truncated in the PDF manual.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dissever’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dissUtils’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dissUtils/libs/dissUtils.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dissUtils/libs/dissUtils.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mrds
Error: package or namespace load failed for ‘mrds’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/truncnorm/libs/truncnorm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/truncnorm/libs/truncnorm.so: failed to map segment from shared object
Error: package ‘mrds’ could not be loaded
Execution halted
Running examples in ‘distance.sample.size-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: DS.penalty
> ### Title: Variance penalty due to unknown detection parameters.
> ### Aliases: DS.penalty
> 
> ### ** Examples
> 
> DS.penalty(detection.function="hazard",theta=c(NA,2),mean.detection.prob.value=0.6,w=1)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Calls: DS.penalty ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘distances’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/distances/libs/distances.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/distances/libs/distances.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: prettyGraphs
Loading required package: car
Loading required package: carData
Error: package or namespace load failed for ‘car’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Error: package ‘car’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘distcrete.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘distdichoR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: distdichogen
> ### Title: normal, skew-normal or gamma distributed data
> ### Aliases: distdichogen distdichogen.default distdichogen.formula
> 
> ### ** Examples
> 
> ## Proportions of low birth weight babies among smoking and non-smoking mothers
> ## (data from Peacock et al. 1995). Returns distributional estimates, standard 
> ## errors and distributional confidence intervals for differences in proportions,
> ## RR and OR of babies having a birth weight under 2500g (low birth weight)
> ## for group smoker (mother smokes) over the odds of LBW in group non-smoker 
> ## (mother doesn't smoke)
> # Formula interface
> distdichogen(birthwt ~ smoke, cp = 2500, data = bwsmoke, exposed = 'smoker',
+              dist = 'sk_normal')
Loading required package: sn
Loading required package: stats4
Error: package or namespace load failed for ‘sn’:
 .onLoad failed in loadNamespace() for 'mnormt', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object
Error: .onLoad failed in loadNamespace() for 'mnormt', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object
Execution halted
Warning: namespace ‘proxy’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘proxy’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Warning: namespace ‘proxy’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Warning: namespace ‘proxy’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘proxy’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
dist_subset: no visible binding for global variable ‘R_subset_dist’
Undefined global functions or variables:
  R_subset_dist
Warning: namespace ‘proxy’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Running examples in ‘disto-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: as.data.frame.disto
> ### Title: Convert a disto object to dataframe
> ### Aliases: as.data.frame.disto
> 
> ### ** Examples
> 
> temp <- stats::dist(iris[,1:4])
> dio  <- disto(objectname = "temp")
> dio
disto with backend: dist
size: 150
> head(as.data.frame(dio))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: head ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘vignette_disto.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘distrDoc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘distreg.vis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: distr
Loading required package: startupmsg
:startupmsg>  Utilities for Start-Up Messages (version 0.9.5)
:startupmsg> 
:startupmsg>  For more information see ?"startupmsg",
:startupmsg>  NEWS("startupmsg")

Loading required package: sfsmisc
Error: package or namespace load failed for ‘distr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘distr’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DistributionUtils’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DistributionUtils/libs/DistributionUtils.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DistributionUtils/libs/DistributionUtils.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: startupmsg
:startupmsg>  Utilities for Start-Up Messages (version 0.9.5)
:startupmsg> 
:startupmsg>  For more information see ?"startupmsg",
:startupmsg>  NEWS("startupmsg")

Loading required package: sfsmisc
Error: package or namespace load failed for ‘distr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘distrr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lazyeval/libs/lazyeval.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lazyeval/libs/lazyeval.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: setRNG
Loading required package: distr
Loading required package: startupmsg
:startupmsg>  Utilities for Start-Up Messages (version 0.9.5)
:startupmsg> 
:startupmsg>  For more information see ?"startupmsg",
:startupmsg>  NEWS("startupmsg")

Loading required package: sfsmisc
Error: package or namespace load failed for ‘distr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘distr’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: setRNG
Loading required package: distrSim
Loading required package: distr
Loading required package: startupmsg
:startupmsg>  Utilities for Start-Up Messages (version 0.9.5)
:startupmsg> 
:startupmsg>  For more information see ?"startupmsg",
:startupmsg>  NEWS("startupmsg")

Loading required package: sfsmisc
Error: package or namespace load failed for ‘distr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘distr’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘divDyn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: stats4
Error: package or namespace load failed for ‘diveMove’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: MuMIn
Error: package or namespace load failed for ‘MuMIn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘MuMIn’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘diveRsity’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘divest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tcltk
Loading required package: glmnet
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # Workaround https://github.com/hadley/testthat/issues/144
  > Sys.setenv(R_TESTS="")
  > 
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘getting_started_with_dkanr.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dkDNA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dkDNA/libs/dkDNA.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dkDNA/libs/dkDNA.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DLASSO’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dlbayes’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dlib’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Package suggested but not available for checking: ‘asreml’
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dlm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dlm/libs/dlm.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dlm/libs/dlm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: snowfall
Loading required package: snow
Error: package or namespace load failed for ‘DLMtool’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dlnm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dlookr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
    rownames, sapply, setdiff, sort, table, tapply, union, unique,
    unsplit, which, which.max, which.min

Error: package or namespace load failed for ‘graph’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/graph/libs/BioC_graph.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/graph/libs/BioC_graph.so: failed to map segment from shared object
Error: package ‘graph’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dlstats’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dmai’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dma’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: cOde
Error: package or namespace load failed for ‘cOde’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘cOde’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dmutate’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘DMwR2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rpart/libs/rpart.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rpart/libs/rpart.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dna’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dna/libs/dna.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dna/libs/dna.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: flare
Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lattice’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dng’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: foreach
Error: package or namespace load failed for ‘DNMF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: network
Error: package or namespace load failed for ‘network’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/network/libs/network.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/network/libs/network.so: failed to map segment from shared object
Error: package ‘network’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: numDeriv
Error: package or namespace load failed for ‘DOBAD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘doBy’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘dockerfiler’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘docker’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘docopulae’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/docopulae/libs/docopulae.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/docopulae/libs/docopulae.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘docstring’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘documair’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/documair/libs/documair.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/documair/libs/documair.so: failed to map segment from shared object
Execution halted
Running examples in ‘document-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: clean_description_file
> ### Title: Make a Default DESCRIPTION File Pass 'R CMD check'
> ### Aliases: clean_description_file
> ### Keywords: internal
> 
> ### ** Examples
> 
> if (! exists("dummy")) assign("dummy", "dumb")
> utils::package.skeleton(path = tempdir())
Creating directories ...
Creating DESCRIPTION ...
Creating NAMESPACE ...
Creating Read-and-delete-me ...
Saving functions and data ...
Making help files ...
Done.
Further steps are described in '/tmp/RtmpMK8fJu/anRpackage/Read-and-delete-me'.
> old <- readLines(file.path(tempdir(), "anRpackage", "DESCRIPTION"))
> document:::clean_description_file(path = file.path(tempdir(), "anRpackage", 
+                                         "DESCRIPTION"))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/backports/libs/backports.so':
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/backports/libs/backports.so: failed to map segment from shared object
Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Introduction_to_document.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘docuSignr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted