Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘stringi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘stringr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘strip’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘striprtf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘StroupGLMM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘stR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘structSSI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/igraph/libs/igraph.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  computeQ.cpp:75:15: warning: catching polymorphic type ‘class std::runtime_error’ by value [-Wcatch-value=]
  computeQ.cpp:134:15: warning: catching polymorphic type ‘class std::runtime_error’ by value [-Wcatch-value=]
  computeQ.cpp:142:17: warning: catching polymorphic type ‘class std::runtime_error’ by value [-Wcatch-value=]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/strum.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: pedigree
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RGtk2/libs/RGtk2.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RGtk2/libs/RGtk2.so: failed to map segment from shared object
Error: package or namespace load failed for ‘strvalidator’:
 .onLoad failed in loadNamespace() for ‘RGtk2’, details:
  call: install_all()
  error: This platform is not yet supported by the automatic installer. Please install GTK+ manually, if necessary. See: http://www.gtk.org
In addition: Warning message:
Failed to load RGtk2 dynamic library, attempting to install it. 
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘stsm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/KFKSDS/libs/KFKSDS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/KFKSDS/libs/KFKSDS.so: failed to map segment from shared object
Execution halted
Running examples in ‘stuart-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bruteforce
> ### Title: Subtest construction using a brute-force approach
> ### Aliases: bruteforce
> 
> ### ** Examples
> 
> 
> # Bruteforce selection in a minimal example
> # selecting 3 of 5 items
> # requires lavaan
> data(fairplayer)
> fs <- list(ra = names(fairplayer)[53:57])
> sel <- bruteforce(fairplayer, fs, 3,
+   cores = 1)  # number of cores set to 1
Loading required namespace: lavaan
Failed with error:  ‘.onLoad failed in loadNamespace() for 'mnormt', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mnormt/libs/mnormt.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object’
Error: lavaan is not installed. You could try using OpenMx or Mplus instead.
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘stubthat’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mAr
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘StVAR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘styler’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘stylest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘stylo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: AIM
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘survival’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘SubgrPlots’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/colorspace/libs/colorspace.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/colorspace/libs/colorspace.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘submax’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘subplex’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/subplex/libs/subplex.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/subplex/libs/subplex.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  rapi.cc:191:12: warning: catching polymorphic type ‘struct subprocess::subprocess_exception’ by value [-Wcatch-value=]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/subprocess.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘subprocess’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/subprocess/libs/subprocess.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/subprocess/libs/subprocess.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘subrank’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/subrank/libs/subrank.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/subrank/libs/subrank.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: CTT
Loading required package: irtoys
Loading required package: sm
Error: package or namespace load failed for ‘sm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/sm/libs/sm.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/sm/libs/sm.so: failed to map segment from shared object
Error: package ‘sm’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘subselect’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘subspace’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘SubTite’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘sumFREGAT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘summarytools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘SUMMER’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘sunburstR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘suncalc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Sunclarco’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘sundialr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘supcluster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘supclust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/class/libs/class.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/class/libs/class.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘supc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: grid
Error: package or namespace load failed for ‘SuperExactTest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/SuperExactTest/libs/SuperExactTest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/SuperExactTest/libs/SuperExactTest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘SuperGauss’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘superheat-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: superheat
> ### Title: Generate supervised heatmaps.
> ### Aliases: superheat
> 
> ### ** Examples
> 
> # plot a heatmap of the numerical iris variables
> # cluster by species and plot Sepal.Length on the right
> # save the superheat object to access the membership vectors
> sh <- superheat(X = iris[,-c(1, 5)],
+                 yr = iris[,1],
+                 yr.axis.name = "Sepal.Length",
+                 membership.rows = iris$Species)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: superheat ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘SuperRanker’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: prim
Error: package or namespace load failed for ‘prim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Error: package ‘prim’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘SuppDists’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/SuppDists/libs/SuppDists.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/SuppDists/libs/SuppDists.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘support’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘sure’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘SurfaceTortoise’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘suropt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘SurrogateTest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘surv2sampleComp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘survAWKMT2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘SurvCorr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘SurvDisc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘survELtest’:
 .onLoad failed in loadNamespace() for ‘Iso’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Iso/libs/Iso.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Iso/libs/Iso.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘surveydata’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: grid
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘SurvGSD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘survidm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘survivalAnalysis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Running examples in ‘survivALL-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: allHR
> ### Title: For all possible separation points for a cohort ordered by a
> ###   continuous measurement, calculate hazard ratio
> ### Aliases: allHR
> 
> ### ** Examples
> 
> library(survivALL)
> data(nki_subset)
> library(Biobase)
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
    rownames, sapply, setdiff, sort, table, tapply, union, unique,
    unsplit, which, which.max, which.min

Error: package or namespace load failed for ‘Biobase’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Biobase/libs/Biobase.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Biobase/libs/Biobase.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘basic-usage.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘survivalROC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/survivalROC/libs/survivalROC.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/survivalROC/libs/survivalROC.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘survPresmooth’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/survPresmooth/libs/survPresmooth.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/survPresmooth/libs/survPresmooth.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘survRM2adapt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: eha
Loading required package: survival
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘survival’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘survsup’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/colorspace/libs/colorspace.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/colorspace/libs/colorspace.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘survtmle’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘survutils-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_cox_res
> ### Title: Run Cox Regression on a Single or Multiple Groups of Data
> ### Aliases: get_cox_res
> 
> ### ** Examples
> 
> library("survival")
Error: package or namespace load failed for ‘survival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘sutteForecastR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/fracdiff/libs/fracdiff.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/fracdiff/libs/fracdiff.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘sValues’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘Standard_dialog_boxes_for_everybody.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘svd’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/svd/libs/svd.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/svd/libs/svd.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘svglite’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘svgPanZoom-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: svgPanZoom
> ### Title: Pan and Zoom R graphics
> ### Aliases: svgPanZoom
> 
> ### ** Examples
> 
> #  svgPanZoom tries to be very flexible with its first argument
> 
> #  in this first example use SVG as a character string
> #    this is probably the least likely use case
> library(svgPanZoom)
> svgPanZoom('
+    <svg style="height:300px;width:300px;">
+      <circle cx="60" cy="60" r="50" style="fill:none;stroke:blue;"/>
+    </svg>
+ ')
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Calls: svgPanZoom ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘svGUI.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘svgViewR’:
 .onLoad failed in loadNamespace() for ‘rjson’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rjson/libs/rjson.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rjson/libs/rjson.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘svIDE’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘temporary_environment.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘SVMMaj’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘SVMMatch’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘svmpath’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/svmpath/libs/svmpath.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/svmpath/libs/svmpath.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘svrpath’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘svs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘SvyNom’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘SwarmSVM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/LiblineaR/libs/LiblineaR.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/LiblineaR/libs/LiblineaR.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘swatches’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: EcoHydRology
Loading required package: operators

Attaching package: ‘operators’

The following objects are masked from ‘package:base’:

    options, strrep

Loading required package: topmodel
Error: package or namespace load failed for ‘topmodel’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/topmodel/libs/topmodel.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/topmodel/libs/topmodel.so: failed to map segment from shared object
Error: package ‘topmodel’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘sweep’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Running examples in ‘sweidnumbr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: as.pin
> ### Title: Parse personal identity numbers to ABS format
> ### Aliases: as.pin is.pin
> 
> ### ** Examples
> 
> # Examples taken from SKV 704 (see references)
> ex_pin1 <- c("196408233234", "640823-3234", "19640823-3234")
> as.pin(pin = ex_pin1)
[1] "196408233234" "196408233234" "196408233234"
Personal identity number(s)> ex_pin2 <- c("6408233234")
> as.pin(ex_pin2)
Assumption: Pin of format YYMMDDNNNC is assumed to be less than 100 years old
[1] "196408233234"
Personal identity number(s)> ex_pin3 <- c(6408233234, 196408233234)
> as.pin(ex_pin3)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Calls: as.pin ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘swgee’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/gee/libs/gee.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/gee/libs/gee.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘swirlify’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘swirl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: switchr
Warning: namespace ‘RCurl’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘RCurl’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘RCurl’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘RCurl’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘RCurl’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘RCurl’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Error: package or namespace load failed for ‘switchrGist’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning: namespace ‘RCurl’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘RCurl’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘RCurl’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘RCurl’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘RCurl’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Warning: namespace ‘RCurl’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Switched to the 'vign1' computing environment. 
29 packages are currently available.
Packages installed in your site library are suppressed.
To switch back to your previous environment type switchBack()
Reverted to the 'original' computing environment. 
33 packages are currently available.
To switch back to your previous environment type switchBack()
Reverted to the 'original' computing environment. 
33 packages are currently available.
To switch back to your previous environment type switchBack()
Loading required namespace: RJSONIO
Failed with error:  ‘unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RJSONIO/libs/RJSONIO.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RJSONIO/libs/RJSONIO.so: failed to map segment from shared object’

Error: processing vignette ‘switchrvign.Rnw’ failed with diagnostics:
 chunk 13 
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RJSONIO/libs/RJSONIO.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RJSONIO/libs/RJSONIO.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘swmmr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: SWMPr
Loading required package: ggplot2
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘ggplot2’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘sylcount’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/sylcount/libs/sylcount.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/sylcount/libs/sylcount.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘syllabifyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # the tests are realized using the "testthat" package
  > # and can be found in ./tests
  > 
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘sylly_vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: clusterSim
Loading required package: cluster
Error: package or namespace load failed for ‘cluster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Error: package ‘cluster’ could not be loaded
Execution halted
Running examples in ‘symDMatrix-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: blockSize
> ### Title: Return the Block Size of a symDMatrix Object.
> ### Aliases: blockSize
> 
> ### ** Examples
> 
> # Load example symDMatrix (G)
> load.symDMatrix(system.file("extdata", "G.RData", package = "symDMatrix"), readonly = TRUE)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bit/libs/bit.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bit/libs/bit.so: failed to map segment from shared object
Calls: load.symDMatrix ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘SympluR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘SymTS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/SymTS/libs/SymTS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/SymTS/libs/SymTS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘synbreed’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/truncnorm/libs/truncnorm.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/truncnorm/libs/truncnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘synchronicity’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘SyncRNG’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/SyncRNG/libs/SyncRNG.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/SyncRNG/libs/SyncRNG.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘SYNCSA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘synoptReg-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pca_decision
> ### Title: PCA decision
> ### Aliases: pca_decision
> 
> ### ** Examples
> 
> # Load data (mslp)
> data(mslp)
> # Converting our data into a S-mode, but without modifying time period
> smode_mslp <- tidy_cuttime_nc(mslp, only_convert = TRUE)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Calls: tidy_cuttime_nc ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Loading required package: parmigene
Error: package or namespace load failed for ‘parmigene’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/parmigene/libs/parmigene.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/parmigene/libs/parmigene.so: failed to map segment from shared object
Error: package ‘parmigene’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Synth’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/kernlab/libs/kernlab.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/kernlab/libs/kernlab.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘sysfonts’:
 .onLoad failed in loadNamespace() for ‘sysfonts’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/sysfonts/libs/sysfonts.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/sysfonts/libs/sysfonts.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘sysid’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘sys’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/sys/libs/sys.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/sys/libs/sys.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘systemicrisk’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘syt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘syuzhet-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_dct_transform
> ### Title: Discrete Cosine Transformation with Reverse Transform.
> ### Aliases: get_dct_transform
> 
> ### ** Examples
> 
> s_v <- get_sentences("I begin this story with a neutral statement.
+ Now I add a statement about how much I despise cats.  
+ I am allergic to them. I hate them. Basically this is a very silly test. But I do love dogs!")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Calls: get_sentences ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > Sys.unsetenv("R_TESTS") # Becasue https://github.com/hadley/testthat/issues/144
  > 
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘syuzhet-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘taber’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: openxlsx
Error: package or namespace load failed for ‘openxlsx’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘openxlsx’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘table1-examples.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘table1xls’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Running examples in ‘tableHTML-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: add_css_caption
> ### Title: Add css to tableHTML's caption
> ### Aliases: add_css_caption
> 
> ### ** Examples
> 
> tableHTML(mtcars, caption = 'This is a caption') %>% 
+   add_css_caption(css = list(c('color', 'font-size'), c('blue', '50px'))) 
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Calls: %>% ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘conditional_column.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tableMatrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tableone’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘tableschema.r-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Field
> ### Title: Field class
> ### Aliases: Field
> ### Keywords: data
> 
> ### ** Examples
> 
> DESCRIPTOR = list(name = "height", type = "number")
> 
> field <- Field$new(descriptor = DESCRIPTOR)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/yaml/libs/yaml.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/yaml/libs/yaml.so: failed to map segment from shared object
Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > Sys.setenv(R_TESTS = "")
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tabplot
Loading required package: bit
Error: package or namespace load failed for ‘bit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bit/libs/bit.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bit/libs/bit.so: failed to map segment from shared object
Error: package ‘bit’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tab’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘tabr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: append_phrases
> ### Title: Append and duplicate
> ### Aliases: append_phrases glue dup
> 
> ### ** Examples
> 
> glue(8, "16-", "8^")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: glue ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘tabr-basics.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tabularaster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tabula’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tabulizerjars’:
 .onLoad failed in loadNamespace() for ‘tabulizerjars’, details:
  call: NULL
  error: .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tabulizer’:
 .onLoad failed in loadNamespace() for ‘tabulizerjars’, details:
  call: NULL
  error: .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tadaatoolbox’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tailDepFun’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘tailr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: can_loop_transform_body
> ### Title: Tests if a function, provided by its name, can be transformed.
> ### Aliases: can_loop_transform_body can_loop_transform_ can_loop_transform
> 
> ### ** Examples
> 
> factorial <- function(n)
+     if (n <= 1) 1 else n * factorial(n - 1)
> factorial_acc <- function(n, acc = 1)
+     if (n <= 1) acc else factorial_acc(n - 1, n * acc)
> 
> can_loop_transform(factorial)     # FALSE -- and prints a warning
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: can_loop_transform ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘taipan’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘takos’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: CDM
Loading required package: mvtnorm
Error: package or namespace load failed for ‘mvtnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘mvtnorm’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TanB’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/fdrtool/libs/fdrtool.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/fdrtool/libs/fdrtool.so: failed to map segment from shared object
Execution halted
Running examples in ‘TANDEM-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: coef.tandem
> ### Title: Returns the regression coefficients from a TANDEM fit
> ### Aliases: coef.tandem
> 
> ### ** Examples
> 
> # unpack example data
> x = example_data$x
> y = example_data$y
> upstream = example_data$upstream
> 
> # fit a tandem model, determine the coefficients and create a prediction
> fit = tandem(x, y, upstream, alpha=0.5)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Calls: tandem ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: R6
Loading required package: magrittr
Error: package or namespace load failed for ‘tangram’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TAQMNGR’:
 .onLoad failed in loadNamespace() for ‘TAQMNGR’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TAQMNGR/libs/TAQMNGR.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TAQMNGR/libs/TAQMNGR.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘taRifx’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tatoo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tau’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tau/libs/tau.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tau/libs/tau.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TauStar’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tauturri’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tawny’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tawny.types’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘taxa’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘taxizedb’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RMySQL/libs/RMySQL.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RMySQL/libs/RMySQL.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘taxize’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘taxlist’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/foreign/libs/foreign.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/foreign/libs/foreign.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘taxonomizr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘taxotools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Loading required package: signal
Error: package or namespace load failed for ‘signal’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘signal’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tbl2xts’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tbltools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tbrf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TBSSurvival’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mcmc/libs/mcmc.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mcmc/libs/mcmc.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘TCGA2STAT.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tcgsaseq’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tclust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tclust/libs/tclust.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tclust/libs/tclust.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Tcomp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  ./CGAL/Filtered_predicate.h:171:7: warning: catching polymorphic type ‘class CGAL::Uncertain_conversion_exception’ by value [-Wcatch-value=]
  ./CGAL/NewKernel_d/Filtered_predicate2.h:99:7: warning: catching polymorphic type ‘class CGAL::Uncertain_conversion_exception’ by value [-Wcatch-value=]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TDA.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TDA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TDAstats’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: SPOT
Error: package or namespace load failed for ‘SPOT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/DEoptim/libs/DEoptim.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/DEoptim/libs/DEoptim.so: failed to map segment from shared object
Error: package ‘SPOT’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TDPanalysis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘tdsc-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: chesmore2011
> ### Title: Coding Matrix from Chesmore (2011)
> ### Aliases: chesmore2011
> ### Keywords: CodingMatrix TDSC
> 
> ### ** Examples
> 
> library(tuneR)
Error: package or namespace load failed for ‘tuneR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tdthap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tdthap/libs/tdthap.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tdthap/libs/tdthap.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: LearnBayes
Loading required package: ggplot2
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘ggplot2’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: eva
Error: package or namespace load failed for ‘eva’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘eva’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TED’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘teigen’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/teigen/libs/teigen.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/teigen/libs/teigen.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Tejapi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘telefit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘telegram.bot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘telegram’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tcltk2
Loading required package: tcltk
Error: package or namespace load failed for ‘TELP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘templates’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Temporal’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tensorA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tensorA/libs/tensorA.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tensorA/libs/tensorA.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tensorflow’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tensorr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘equivariant_estimation.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Using-Ternary.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tesseract’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘GIAValidationExample.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘tester_introduction.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Loading required package: minerva
Error: package or namespace load failed for ‘minerva’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘minerva’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘AnIntroductiontoTestFunctions.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TestingSimilarity’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘testthat’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘testthis.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tetraclasse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TeXCheckR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TexExamRandomizer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘texPreview’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/sparsepp/include/sparsepp/spp_utils.h:422:44: warning: ‘void* realloc(void*, size_t)’ moving an object of non-trivially copyable type ‘struct std::pair<const std::pair<unsigned int, unsigned int>, int>’; use ‘new’ and ‘delete’ instead [-Wclass-memaccess]
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/sparsepp/include/sparsepp/spp_utils.h:422:44: warning: ‘void* realloc(void*, size_t)’ moving an object of non-trivially copyable type ‘struct std::pair<const std::pair<unsigned int, unsigned int>, float>’; use ‘new’ and ‘delete’ instead [-Wclass-memaccess]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/text2vec.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘text2vec’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘textcat’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tau/libs/tau.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tau/libs/tau.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘textclean’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘textfeatures’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: distrom
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: stylo
Error: package or namespace load failed for ‘stylo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘stylo’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘textrank’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘textreadr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘textreg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘textreuse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘textshape’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: koRpus.lang.en
Loading required package: koRpus
Loading required package: sylly
Error: package or namespace load failed for ‘koRpus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Error: package ‘koRpus’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tfdatasets’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tfestimators’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TFisher’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TFMPvalue’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tfruns’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TFX’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tgcd’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tgcd/libs/tgcd.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tgcd/libs/tgcd.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tgp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TGS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ThankYouStars’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Running examples in ‘Thermimage-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: diffFrame
> ### Title: A frame difference function for subtracting adjacent frames from
> ###   an imported thermal image sequence.
> ### Aliases: diffFrame
> 
> ### ** Examples
> 
> 
> # set w to 640 and h to 480
> w<-640
> h<-480
> f<-system.file("extdata", "SampleSEQ.seq", package = "Thermimage")
> x<-frameLocates(f)
> suppressWarnings(templookup<-raw2temp(1:65535))
> alldata<-unlist(lapply(x$f.start, getFrames, vidfile=f, w=w, h=h))
> alldata<-matrix(alldata, nrow=w*h, byrow=FALSE)
> alltemperature<-templookup[alldata]
> alltemperature<-unname(matrix(alltemperature, nrow=w*h, byrow=FALSE))
> 
> dalltemperature<-as.matrix(diffFrame(alltemperature, absolute=TRUE), nrow=w)
> 
> # Plot 
> plotTherm(dalltemperature[,1], templookup=NULL, w=w, h=h,  minrangeset=min(dalltemperature),
+           maxrangeset=max(dalltemperature), trans="mirror.matrix")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/dotCall64/libs/dotCall64.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/dotCall64/libs/dotCall64.so: failed to map segment from shared object
Calls: plotTherm ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘theseus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘thgenetics’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/thgenetics/libs/thgenetics.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/thgenetics/libs/thgenetics.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Thinknum’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘thinkr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘thor’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/thor/libs/thor.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/thor/libs/thor.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ThreeArmedTrials’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘threeboost-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: geeboost
> ### Title: GEEBoost
> ### Aliases: geeboost
> 
> ### ** Examples
> 
> # Generate some test data
> library(mvtnorm)
Error: package or namespace load failed for ‘mvtnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ThresholdROC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘threshr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ithresh
> ### Title: Threshold selection in the i.i.d. case (peaks over threshold)
> ### Aliases: ithresh
> 
> ### ** Examples
> 
> # Note:
> # 1. Smoother plots result from making n larger than the default n = 1000.
> # 2. In the examples below validation thresholds rather higher than is
> #    advisable have been used, with far fewer excesses than the minimum of
> #    50 suggested by Jonathan and Ewans (2013).
> 
> ## North Sea significant wave heights, default prior -----------------------
> #' # A plot akin to the top left of Figure 7 in Northrop et al. (2017)
> #' # ... but with fewer training thresholds
> 
> u_vec_ns <- quantile(ns, probs = seq(0.05, 0.95, by = 0.1))
> ns_cv <- ithresh(data = ns, u_vec = u_vec_ns, n_v = 3)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: ithresh ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘threshr-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘thriftr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rly/libs/rly.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rly/libs/rly.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tibble’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tibbletime’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tibbrConnector’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘TiddlyWikiR_getting_started.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TideCurves’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/chron/libs/chron.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/chron/libs/chron.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TideTables’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/chron/libs/chron.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/chron/libs/chron.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidybayes’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidyboot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidycensus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidygenomics’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidygraph’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidyhydat’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidyimpute’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidyLPA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidymodels’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidyposterior’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidypredict’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidyRSS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidyselect’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidystats’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidystringdist’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidytext’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidytidbits’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidytransit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidytree’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidyverse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tidyxl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tiff’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tiff/libs/tiff.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tiff/libs/tiff.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tigerhitteR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: abd
Loading required package: nlme
Error: package or namespace load failed for ‘nlme’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘nlme’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tigreBrowserWriter’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tigris’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tikzDevice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/filehash/libs/filehash.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/filehash/libs/filehash.so: failed to map segment from shared object
Execution halted
Running examples in ‘TileManager-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: TileScheme
> ### Title: Tile Scheme
> ### Aliases: TileScheme
> 
> ### ** Examples
> 
> # Create an irregularly shaped grid defined by the number of raster cells
> ts1 <- TileScheme(CHMdemo, dimByCell = c(100,120))
Loading required package: raster
Loading required package: sp
Error: package or namespace load failed for ‘sp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Failed with error:  ‘package ‘sp’ could not be loaded’
Error in .requirePackage(package) : 
  unable to find required package ‘raster’
Calls: TileScheme ... .extendsForS3 -> extends -> getClassDef -> .requirePackage
Execution halted
Running examples in ‘tiler-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: tile
> ### Title: Create map tiles
> ### Aliases: tile
> 
> ### ** Examples
> 
> ## Don't show: 
> tmpfiles <- list.files(tempdir(), full.names = TRUE)
> ## End(Don't show)
> # non-geographic/simple CRS
> x <- system.file("maps/map.png", package = "tiler")
> tiles <- file.path(tempdir(), "tiles")
> tile(x, tiles, "2-3")
Creating tiles. Please wait...
Creating tile viewer...
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/png/libs/png.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/png/libs/png.so: failed to map segment from shared object
Calls: tile ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘tiler.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘timechange’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘timelineR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘timelineS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘timeROC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘timeSeq’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/gss/libs/gss.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/gss/libs/gss.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TimeSeries.OBeu’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘timetk’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘timetools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/timetools/libs/timetools.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/timetools/libs/timetools.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘timetree’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘timevis’:
 .onLoad failed in loadNamespace() for ‘timevis’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TimeVTree’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘timma’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘timsac’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/timsac/libs/timsac.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/timsac/libs/timsac.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Tinflex’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Tinflex/libs/Tinflex.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Tinflex/libs/Tinflex.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tint’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Downloading TIOBE Index Data using your Internet...
Downloading TIOBE Index data failed!
Error Message:
Error in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object


It looks like this package has a loading problem: see the messages for
details.
* checking whether the package can be loaded with stated dependencies ...Downloading TIOBE Index Data using your Internet...
Downloading TIOBE Index data failed!
Error Message:
Error in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object


It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Downloading TIOBE Index Data using your Internet...
Downloading TIOBE Index data failed!
Error Message:
Error in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object


It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TipDatingBeast’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mclust/libs/mclust.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mclust/libs/mclust.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TippingPoint’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tippy’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tipr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tis/libs/tis.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tis/libs/tis.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘glades.TITAN.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘titeIR’:
 .onLoad failed in loadNamespace() for ‘Iso’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Iso/libs/Iso.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Iso/libs/Iso.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘titrationCurves.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TKF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tkrgl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Tlasso’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TLBC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TLdating’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘tlm.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tmap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tmaptools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TMB’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tmcn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tmcn/libs/tmcn.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tmcn/libs/tmcn.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tmg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Tmisc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: R.utils
Loading required package: R.oo
Loading required package: R.methodsS3
R.methodsS3 v1.7.1 (2016-02-15) successfully loaded. See ?R.methodsS3 for help.
R.oo v1.22.0 (2018-04-21) successfully loaded. See ?R.oo for help.

Attaching package: ‘R.oo’

The following objects are masked from ‘package:methods’:

    getClasses, getMethods

The following objects are masked from ‘package:base’:

    attach, detach, gc, load, save

R.utils v2.7.0 successfully loaded. See ?R.utils for help.

Attaching package: ‘R.utils’

The following object is masked from ‘package:utils’:

    timestamp

The following objects are masked from ‘package:base’:

    cat, commandArgs, getOption, inherits, isOpen, nullfile, parse,
    warnings

Error: package or namespace load failed for ‘tmle.npvi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/geometry/libs/geometry.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/geometry/libs/geometry.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tmod’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tm.plugin.alceste’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: DSL
Error: package or namespace load failed for ‘DSL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/DSL/libs/DSL.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/DSL/libs/DSL.so: failed to map segment from shared object
Error: package ‘DSL’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tm.plugin.europresse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tm.plugin.factiva’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tm.plugin.lexisnexis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tm.plugin.mail’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tm.plugin.webmining’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: NLP
Error: package or namespace load failed for ‘tm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tmvnsim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tmvnsim/libs/tmvnsim.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tmvnsim/libs/tmvnsim.so: failed to map segment from shared object
Execution halted
Running examples in ‘TNC-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: tbc
> ### Title: Temporal betweenness centrality
> ### Aliases: tbc
> 
> ### ** Examples
> 
> # Create a list of adjacency matrices, plot the corresponding graphs
> # (using the igraph package) and calculate tbc
> 
> A1 <- matrix(c(0,1,0,0,0,0,
+                1,0,1,0,0,0,
+                0,1,0,0,0,0,
+                0,0,0,0,0,0,
+                0,0,0,0,0,0,
+                0,0,0,0,0,0), ncol=6)
> 
> A2 <- matrix(c(0,0,0,0,0,0,
+                0,0,1,0,0,0,
+                0,1,0,1,1,0,
+                0,0,1,0,0,0,
+                0,0,1,0,0,0,
+                0,0,0,0,0,0), ncol=6)
> 
> A3 <- matrix(c(0,0,0,0,0,0,
+                0,0,0,0,0,0,
+                0,0,0,0,0,0,
+                0,0,0,0,0,0,
+                0,0,0,0,0,0,
+                0,0,0,0,0,0), ncol=6)
> 
> A4 <- matrix(c(0,1,0,0,0,0,
+                1,0,0,1,0,0,
+                0,0,0,0,0,0,
+                0,1,0,0,0,0,
+                0,0,0,0,0,0,
+                0,0,0,0,0,0), ncol=6)
> 
> library(igraph)
Error: package or namespace load failed for ‘igraph’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/igraph/libs/igraph.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: DESeq
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
    rownames, sapply, setdiff, sort, table, tapply, union, unique,
    unsplit, which, which.max, which.min

Loading required package: Biobase
Error: package or namespace load failed for ‘Biobase’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Biobase/libs/Biobase.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Biobase/libs/Biobase.so: failed to map segment from shared object
Error: package ‘Biobase’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘togglr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/getPass/libs/getPass.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/getPass/libs/getPass.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tokenizers’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tolerance’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘toOrdinal’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘topicmodels’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/slam/libs/slam.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/slam/libs/slam.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TopKLists’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘topmodel’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/topmodel/libs/topmodel.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/topmodel/libs/topmodel.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘topologyGSA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/graph/libs/BioC_graph.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/graph/libs/BioC_graph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tosca’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TOSTER’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘totalcensus’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Running examples in ‘TotalCopheneticIndex-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: list.ancestors
> ### Title: List ancestors
> ### Aliases: list.ancestors
> 
> ### ** Examples
> 
>   tree   <- ape::read.tree(text='(1, (2, (3, (4, 5))));')
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Calls: :: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘touchard’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘touch’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tourr
Loading required package: colorspace
Error: package or namespace load failed for ‘colorspace’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/colorspace/libs/colorspace.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/colorspace/libs/colorspace.so: failed to map segment from shared object
Error: package ‘colorspace’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘toxboot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tpAUC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TP.idm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TP.idm/libs/TP.idm.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TP.idm/libs/TP.idm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TPMplt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tensorA/libs/tensorA.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tensorA/libs/tensorA.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  RngStream.c:347:4: warning: ‘strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TPmsm.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: lgtdl
Error: package or namespace load failed for ‘tpr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tpr/libs/tpr.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tpr/libs/tpr.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TR8’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tracheideR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘trackdem’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: histry
Error: package or namespace load failed for ‘histry’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/graph/libs/BioC_graph.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/graph/libs/BioC_graph.so: failed to map segment from shared object
Error: package ‘histry’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tractor.base’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: antitrust
Error: package or namespace load failed for ‘antitrust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘antitrust’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TRADER’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TrafficBDE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘trafo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/FNN/libs/FNN.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/FNN/libs/FNN.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: permute
Loading required package: mclust
Error: package or namespace load failed for ‘mclust’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mclust/libs/mclust.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mclust/libs/mclust.so: failed to map segment from shared object
Error: package ‘mclust’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘traits’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TrajDataMining’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RPostgreSQL/libs/RPostgreSQL.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RPostgreSQL/libs/RPostgreSQL.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘trajectories’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘traj’:
 .onLoad failed in loadNamespace() for ‘mnormt’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mnormt/libs/mnormt.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mnormt/libs/mnormt.so: failed to map segment from shared object
Execution halted
Running examples in ‘trajr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: TrajDAMinMax
> ### Title: First direction autocorrelation minimum/maximum
> ### Aliases: TrajDAMinMax TrajDAFindFirstMinimum TrajDAFindFirstMaximum
> 
> ### ** Examples
> 
> set.seed(42)
> trj <- TrajGenerate(600, angularErrorSd = 1)
> smoothed <- TrajSmoothSG(trj, 3, 11)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Calls: TrajSmoothSG ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘trajr-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TraMineR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘Transcribing_audio_with_transcribeR.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘transformr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘translate’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘translateR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RJSONIO/libs/RJSONIO.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RJSONIO/libs/RJSONIO.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘transport’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘trapezoid’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/trapezoid/libs/trapezoid.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/trapezoid/libs/trapezoid.so: failed to map segment from shared object
Execution halted
Running examples in ‘trawl-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Bivariate_LSDsim
> ### Title: Simulates from the bivariate logarithmic series distribution
> ### Aliases: Bivariate_LSDsim
> 
> ### ** Examples
> 
> set.seed(1)
> p1 <- 0.15
> p2 <- 0.3
> N <- 100
> #Simulate N realisations from the bivariate LSD
> y <- Bivariate_LSDsim(N, p1, p2)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Runuran/libs/Runuran.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Runuran/libs/Runuran.so: failed to map segment from shared object
Calls: Bivariate_LSDsim ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TreatmentSelection’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tree.bins’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TreeBUGS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘treecm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘treeDA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘treeman’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/treeman/libs/treeman.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/treeman/libs/treeman.so: failed to map segment from shared object
Execution halted
Running examples in ‘treemapify-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: geom_treemap
> ### Title: A 'ggplot2' geom to draw a treemap.
> ### Aliases: geom_treemap
> 
> ### ** Examples
> 
> 
> ggplot2::ggplot(G20, ggplot2::aes(area = gdp_mil_usd, fill = region)) +
+  geom_treemap()
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: :: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘introduction-to-treemapify.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘treemap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/colorspace/libs/colorspace.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/colorspace/libs/colorspace.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘treeperm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/treeperm/libs/treeperm.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/treeperm/libs/treeperm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tree’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tree/libs/tree.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tree/libs/tree.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TreeSearch’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: TreeSim
Loading required package: ape
Error: package or namespace load failed for ‘ape’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘ape’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘trelliscopejs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘trelloR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TrendInTrend’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘trend’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ManifoldOptim
Loading required package: Rcpp
Error: package or namespace load failed for ‘Rcpp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘Rcpp’ could not be loaded
Execution halted
Running examples in ‘TriadSim-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fit.risk.model.par
> ### Title: Resample families based on the risk model
> ### Aliases: fit.risk.model.par
> 
> ### ** Examples
> 
> tar.snp <- c(21, 118, 121, 140, 155, 168, 218, 383) 
> found.brks <- get.brks(N.brk=3,n.ped=1000, snp.all2, tar.snp,rcmb.rate=NA)
> breaks <- found.brks[[1]]
> family.position <- found.brks[[2]] 
> betas <- c(-6.4, 3.2, 5.8)
> pwy <- list(1:4,5:8)
> m.file <- file.path(system.file(package = "TriadSim"),'extdata/pop1_4chr_mom')
> f.file <- file.path(system.file(package = "TriadSim"),'extdata/pop1_4chr_dad')
> k.file <- file.path(system.file(package = "TriadSim"),'extdata/pop1_4chr_kid')
> # the preloaded data frame snp.all2 contains the data frame read from the corresponding .bim file.
> target.geno <- get.target.geno(c(m.file,f.file,k.file), tar.snp,snp.all2)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Calls: get.target.geno ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘TriadSim.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TrialSize’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TrialSize/libs/TrialSize.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TrialSize/libs/TrialSize.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tribe’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tricolore’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘triebeard’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘trigpoints’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘trimr-vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘trinROC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TrioSGL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TrioSGL/libs/TrioSGL.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TrioSGL/libs/TrioSGL.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tripack’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tripack/libs/tripack.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tripack/libs/tripack.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tripEstimation’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘tRophicPosition-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: TPmodel
> ### Title: Function to create a JAGS-based Bayesian model to calculate
> ###   trophic position
> ### Aliases: TPmodel
> 
> ### ** Examples
> 
> isotopeData <- generateTPData()
> model.string <- jagsBayesianModel()
> model <- TPmodel(data = isotopeData, model.string = model.string,
+ n.adapt = 500)
Error: .onLoad failed in loadNamespace() for 'rjags', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rjags/libs/rjags.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rjags/libs/rjags.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Multiple_model_calculation_of_trophic_position_in_R.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘trread’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: randtoolbox
Loading required package: rngWELL
Error: package or namespace load failed for ‘rngWELL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rngWELL/libs/rngWELL.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rngWELL/libs/rngWELL.so: failed to map segment from shared object
Error: package ‘rngWELL’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘truncnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/truncnorm/libs/truncnorm.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/truncnorm/libs/truncnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: truncreg
Loading required package: maxLik
Loading required package: miscTools
Error: package or namespace load failed for ‘maxLik’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘maxLik’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘trustOptim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘tryCatchLog-intro.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TSA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/leaps/libs/leaps.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/leaps/libs/leaps.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tsbox’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tsbridge’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: ICtest
Loading required package: JADE
Error: package or namespace load failed for ‘JADE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cluster/libs/cluster.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Error: package ‘JADE’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: wmtsa
Error: package or namespace load failed for ‘wmtsa’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/splus2R/libs/splus2R.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/splus2R/libs/splus2R.so: failed to map segment from shared object
Error: package ‘wmtsa’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tscount’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ltsa/libs/ltsa.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ltsa/libs/ltsa.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tsc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tsc/libs/tsc.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tsc/libs/tsc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TSCS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TSDT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tsDyn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tseriesChaos/libs/tseriesChaos.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tseriesChaos/libs/tseriesChaos.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tsensembler’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TSEntropies’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TSEntropies/libs/TSEntropies.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TSEntropies/libs/TSEntropies.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tseriesEntropy’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tseries’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TSEtools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: TSdbi
Error: package or namespace load failed for ‘TSfame’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tis/libs/tis.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tis/libs/tis.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: GPArotation
Loading required package: dse
Loading required package: tfplot
Loading required package: tframe
Error: package or namespace load failed for ‘dse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/dse/libs/dse.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/dse/libs/dse.so: failed to map segment from shared object
Error: package ‘dse’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tsfknn’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TSF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/fracdiff/libs/fracdiff.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/fracdiff/libs/fracdiff.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: RandomFieldsUtils
Error: package or namespace load failed for ‘RandomFieldsUtils’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RandomFieldsUtils/libs/RandomFieldsUtils.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RandomFieldsUtils/libs/RandomFieldsUtils.so: failed to map segment from shared object
Error: package ‘RandomFieldsUtils’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TSHRC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TSHRC/libs/TSHRC.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TSHRC/libs/TSHRC.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tsibble’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: MAPA
Loading required package: forecast
Error: package or namespace load failed for ‘forecast’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘forecast’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tsiR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: plus
Loading required package: lars
Error: package or namespace load failed for ‘lars’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lars/libs/lars.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lars/libs/lars.so: failed to map segment from shared object
Error: package ‘lars’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TSMining’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: TSdbi
Error: package or namespace load failed for ‘TSmisc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Execution halted
Running ‘fontconfig-helper.R’ [0s/0s]
  Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
  Running ‘update-version.R’ [0s/0s]
Running the tests in ‘tests/fontconfig-helper.R’ failed.
Complete output:
  > if (!identical(Sys.getenv("NOT_CRAN"), "true") ||
  +   identical(Sys.getenv("TRAVIS"), "true") ||
  +   identical(Sys.getenv("APPVEYOR"), "True")) {
  +   # Use minimal fonts.conf to speed up fc-cache
  +   gdtools::set_dummy_conf()
  + }
  Error in dyn.load(file, DLLpath = DLLpath, ...) : 
    unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
    /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
  Calls: :: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
  Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘press.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: TSdbi
Error: package or namespace load failed for ‘TSMySQL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: TSdbi
Error: package or namespace load failed for ‘TSodbc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tsoutliers’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tsPI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/KFAS/libs/KFAS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/KFAS/libs/KFAS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: TSdbi
Error: package or namespace load failed for ‘TSPostgreSQL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TSP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TSP/libs/TSP.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TSP/libs/TSP.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TSPred’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TSrepr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: TSdbi
Error: package or namespace load failed for ‘TSsdmx’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tsSelect’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: TSdbi
Error: package or namespace load failed for ‘TSSQLite’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TSsql’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TSS.RESTREND’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘TSstudio-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Coffee_Prices
> ### Title: Coffee Prices: Robusta and Arabica
> ### Aliases: Coffee_Prices
> ### Keywords: datasets
> 
> ### ** Examples
> 
> ts_plot(Coffee_Prices)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: ts_plot ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Plotting_Time_Series.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TSTr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tools
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘MASS’ could not be loaded
Execution halted
Running examples in ‘TSVC-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: TSVC
> ### Title: Tree-Structured Modelling of Varying Coefficients
> ### Aliases: TSVC print.TSVC
> 
> ### ** Examples
> 
> # Swiss Labour Market 
> library(AER)
Loading required package: car
Loading required package: carData
Error: package or namespace load failed for ‘car’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Error: package ‘car’ could not be loaded
Execution halted
Running examples in ‘tswge-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: butterworth.wge
> ### Title: Perform Butterworth Filter
> ### Aliases: butterworth.wge
> ### Keywords: filtering Butterworth
> 
> ### ** Examples
> data(wages)
>     butterworth.wge(wages,order=4,type="low",cutoff=.05)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Calls: butterworth.wge ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tsxtreme’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/evd/libs/evd.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/evd/libs/evd.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TTAinterfaceTrendAnalysis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TTCA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TTR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tubern’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tuber’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tufte’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  libqhull/rboxlib.c:351:5: warning: ‘strncat’ output may be truncated copying between 0 and 199 bytes from a string of length 199 [-Wstringop-truncation]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/TukeyRegion.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Loading required package: httr
Loading required package: RCurl
Loading required package: bitops
Error: package or namespace load failed for ‘bitops’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Error: package ‘bitops’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TunePareto’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TunePareto/libs/TunePareto.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TunePareto/libs/TunePareto.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tuneR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Loading required package: numDeriv
Loading required package: quantreg
Loading required package: SparseM
Error: package or namespace load failed for ‘SparseM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/SparseM/libs/SparseM.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/SparseM/libs/SparseM.so: failed to map segment from shared object
Error: package ‘SparseM’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘turner_introduction.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘TurtleGraphics.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: httr
Loading required package: tidyverse
Error: package or namespace load failed for ‘tidyverse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Error: package ‘tidyverse’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tutorial’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TUWmodel’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TUWmodel/libs/TUWmodel.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TUWmodel/libs/TUWmodel.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tvd’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tvm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tvR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TVsMiss’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tweedie’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tweedie/libs/tweedie.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tweedie/libs/tweedie.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tweenr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘tweet2r’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘twfy.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘twilio’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘twitteR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bit/libs/bit.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bit/libs/bit.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TwoCop’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TwoCop/libs/TwoCop.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/TwoCop/libs/TwoCop.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TwoPhaseInd’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘TwoRegression-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: read_AG_raw
> ### Title: File reading function for primary accelerometer files
> ### Aliases: read_AG_raw
> 
> ### ** Examples
> 
> raw_file <-
+     system.file("extdata",
+     "TestID_LeftWrist_RAW.csv",
+     package = "TwoRegression")
> 
> read_AG_raw(raw_file)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Calls: read_AG_raw ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘TwoRegression.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘twosamples’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘TwoStepCLogit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘txtq’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/base64url/libs/base64url.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/base64url/libs/base64url.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘uaparserjs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘uavRmp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘uavRst’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ubci’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ubeR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: MBA
Error: package or namespace load failed for ‘MBA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MBA/libs/MBA.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MBA/libs/MBA.so: failed to map segment from shared object
Error: package ‘MBA’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘uCAREChemSuiteCLI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ucbthesis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ucminf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ucminf/libs/ucminf.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ucminf/libs/ucminf.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘UCSCXenaTools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘udapi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘udpipe’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘udunits2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/udunits2/libs/udunits2.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/udunits2/libs/udunits2.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘intro-to-uGMAR.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘uHMM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/leaps/libs/leaps.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/leaps/libs/leaps.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘uiucthemes’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ukbtools’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Running examples in ‘ukgasapi-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: dataItemExplorer
> ### Title: Data Item Explorer API
> ### Aliases: dataItemExplorer
> 
> ### ** Examples
> 
> # Specify the data item(s) to enquire from API
> dataitems <- c("Storage Injection, Actual",
+                "Storage Withdrawal, Actual")
> 
> # Initialise API (requires internet connection for this step)
> response <- dataItemExplorer(dataitems,
+                              fromdate = "2013-10-01",
+                              todate="2015-09-30")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Calls: dataItemExplorer ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Running examples in ‘UKgrid-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: extract_grid
> ### Title: Extracting and Aggregation of the UKgrid Dataset
> ### Aliases: extract_grid
> 
> ### ** Examples
> 
> df <- extract_grid(type = "xts", columns = "ND", start = 2017)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Calls: extract_grid ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘UKgrid_vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘umap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Umatrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ump’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ump/libs/ump.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ump/libs/ump.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘UncertainInterval’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/nloptr/libs/nloptr.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/nloptr/libs/nloptr.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘UNCLES’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pdist/libs/pdist.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pdist/libs/pdist.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘uncmbb’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘understandBPMN’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘unfoldr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/unfoldr/libs/unfoldr.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/unfoldr/libs/unfoldr.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘UNF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ungroup’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘UniDOE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘unifDAG’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/gmp/libs/gmp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/gmp/libs/gmp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘convexhull.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘UniIsoRegression’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘uniReg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/quadprog/libs/quadprog.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/quadprog/libs/quadprog.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘unitizer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/diffobj/libs/diffobj.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/diffobj/libs/diffobj.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘units’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘unix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/unix/libs/unix.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/unix/libs/unix.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘unjoin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘unpivotr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘overview.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Running examples in ‘unrtf-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: unrtf
> ### Title: Convert rtf Documents
> ### Aliases: unrtf
> 
> ### ** Examples
> 
> library(unrtf)
> text <- unrtf("https://jeroen.github.io/files/sample.rtf", format = "text")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/sys/libs/sys.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/sys/libs/sys.so: failed to map segment from shared object
Calls: unrtf ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘unsystation’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘untb’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/gmp/libs/gmp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/gmp/libs/gmp.so: failed to map segment from shared object
Execution halted
Running examples in ‘unvotes-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: un_roll_calls
> ### Title: Data on each roll call of the United Nations General Assembly
> ### Aliases: un_roll_calls
> ### Keywords: datasets
> 
> ### ** Examples
> 
> 
> library(dplyr)
Error: package or namespace load failed for ‘dplyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘unvotes.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘updog’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: RItools
Loading required package: SparseM
Error: package or namespace load failed for ‘SparseM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/SparseM/libs/SparseM.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/SparseM/libs/SparseM.so: failed to map segment from shared object
Error: package ‘SparseM’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘UPMASK’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘upmfit-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: upmrun
> ### Title: Bayesian Markov Chain Monte Carlo model building for
> ###   household-community tuberculosis transmission models
> ### Aliases: upmrun
> 
> ### ** Examples
> 
> upmrun(design.matrix=upmdata, n.iter=100, prior.alpha = c(-2.2, 1/sqrt(3)))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Calls: upmrun ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘upm-primer.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘UpSetR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘uptasticsearch’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘uptimeRobot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Running examples in ‘upwaver-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: board_details
> ### Title: Information about a specific board
> ### Aliases: board_details
> 
> ### ** Examples
> 
> board_details("ims-fhs", 14351, "a44fa67c5df2acc9836058ffca870d7b78b017cb")
Error in is.response(x) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Calls: board_details ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘upwaver.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘urca’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘urlshorteneR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘urltools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘uroot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/uroot/libs/uroot.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/uroot/libs/uroot.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘usaboundaries-sample-analysis.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘userfriendlyscience’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘usethis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Data_sources_and_cleaning.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘usl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ustyc’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘utf8latex’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/utf8latex/libs/utf8latex.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/utf8latex/libs/utf8latex.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘utf8’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/utf8/libs/utf8.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/utf8/libs/utf8.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘utilsIPEA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mldr
Error: package or namespace load failed for ‘mldr’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Error: package ‘mldr’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘uuid’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/uuid/libs/uuid.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/uuid/libs/uuid.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘uwIntroStats’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘V8’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘vaersNDvax-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: vaersNDvax
> ### Title: Non-Domestic Vaccine Adverse Event Reporting System (VAERS)
> ###   vaccine data for Present
> ### Aliases: vaersNDvax vaersNDvax-package
> 
> ### ** Examples
> 
> library(data.table)
Error: package or namespace load failed for ‘data.table’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Running examples in ‘vaersvax-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: vaersvax
> ### Title: US Vaccine Adverse Event Reporting System (VAERS) vaccine data
> ###   for Present
> ### Aliases: vaersvax vaersvax-package
> 
> ### ** Examples
> 
> library("data.table")
Error: package or namespace load failed for ‘data.table’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Running examples in ‘valaddin-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: checklist
> ### Title: Is a formula a check formula?
> ### Aliases: checklist is_check_formula is_checklist
> 
> ### ** Examples
> 
> is_check_formula(list(~x, ~y) ~ is.numeric)  # [1] TRUE
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so: failed to map segment from shared object
Calls: is_check_formula ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘valaddin.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘valection’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  include/rapidjson/document.h:1952:24: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘rapidjson::GenericValue<rapidjson::UTF8<> >::Member’ {aka ‘struct rapidjson::GenericMember<rapidjson::UTF8<>, rapidjson::MemoryPoolAllocator<> >’} with no trivial copy-assignment; use copy-assignment instead [-Wclass-memaccess]
  include/rapidjson/document.h:1939:24: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘class rapidjson::GenericValue<rapidjson::UTF8<> >’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  include/rapidjson/document.h:1952:24: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘rapidjson::GenericValue<rapidjson::UTF8<>, rapidjson::CrtAllocator>::Member’ {aka ‘struct rapidjson::GenericMember<rapidjson::UTF8<>, rapidjson::CrtAllocator>’} with no trivial copy-assignment; use copy-assignment instead [-Wclass-memaccess]
  include/rapidjson/document.h:1939:24: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘class rapidjson::GenericValue<rapidjson::UTF8<>, rapidjson::CrtAllocator>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/validatejsonr.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘validatejsonr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘validate’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/yaml/libs/yaml.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/yaml/libs/yaml.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘valorate’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘valr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: orthopolynom
Loading required package: polynom
Error: package or namespace load failed for ‘valuer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vamc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vanddraabe’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vanquish’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/class/libs/class.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/class/libs/class.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vapour’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘varband’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘varbin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rpart/libs/rpart.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rpart/libs/rpart.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘VarBundle’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘varbvs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘VariableScreening’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘VarianceGamma’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/DistributionUtils/libs/DistributionUtils.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/DistributionUtils/libs/DistributionUtils.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: measures
Loading required package: party
Loading required package: grid
Loading required package: mvtnorm
Error: package or namespace load failed for ‘mvtnorm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘mvtnorm’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘variosig’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: jmcm
Error: package or namespace load failed for ‘jmcm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘jmcm’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘varrank’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/FNN/libs/FNN.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/FNN/libs/FNN.so: failed to map segment from shared object
Execution halted
Running examples in ‘VARSEDIG-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: VARSEDIG
> ### Title: Variable selection to discriminate among taxonomic groups
> ### Aliases: VARSEDIG
> ### Keywords: VARSEDIG
> 
> ### ** Examples
> 
> 
> data(characiformes)
> 
> VARSEDIG(data = characiformes , variables = c("M2","M3","M4","M5","M6","M7","M8","M9","M10",
+ "M11","M12","M13","M14","M15","M16","M17","M18","M19","M20","M21","M22","M23",
+ "M24","M25","M26","M27","M28"), group="Species" , group1= "Moenkhausia oligolepis",
+ group2="Moenkhausia dichroura", LEGENDd=c("x='topright'", "legend = dati",
+ "col = COLORB", "lty=lty", "bty='n'", "cex=1.2", "text.font= 3"),
+ LEGENDs=c("x='topright'", "legend=unique(datosF[,'Group'])", "col = color1",
+ "pch = pcht", "bty='n'", "cex=1.2", "text.font=3"), LEGENDr=c("x='topright'",
+ "legend = dati", "col=col", "pch= c(16,16)", "bty='n'", "cex=1.2", "text.font=3"),
+ XLIMs=c(-1.2,1.2), YLIMs=c(-1.3,1.3), BIVTEST12=c("br=br", "cex=1.1",
+ "col=colbiv", "sub=sub", "Pcol=Pcol"), BIVTEST21=c("br=br", "cex=1.1",
+ "col=colbiv", "sub=sub", "Pcol=Pcol"), colbiv="blue", ellipse=TRUE, convex=FALSE)
dev.new(): using pdf(file="Rplots1.pdf")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Calls: VARSEDIG ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘VarSelLCM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘VARsignR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/HI/libs/HI.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/HI/libs/HI.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘VARtests’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vbdm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/vbdm/libs/vbdm.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/vbdm/libs/vbdm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vbsr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/vbsr/libs/vbsr.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/vbsr/libs/vbsr.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘VBTree’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tensorA/libs/tensorA.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/tensorA/libs/tensorA.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘VCA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: vcd
Loading required package: grid
Error: package or namespace load failed for ‘vcd’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Error: package ‘vcd’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: grid
Error: package or namespace load failed for ‘vcd’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vcfR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: parallel
Loading required package: partykit
Loading required package: grid
Loading required package: libcoin
Error: package or namespace load failed for ‘libcoin’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Error: package ‘libcoin’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vcr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vctrs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘VDAP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Vdgraph’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Vdgraph/libs/Vdgraph.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Vdgraph/libs/Vdgraph.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘VdgRsm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/AlgDesign/libs/AlgDesign.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/AlgDesign/libs/AlgDesign.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vdiffr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
problem found in ‘vdmR-package.Rd’
Running examples in ‘vdmR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: vcmap
> ### Title: Generate choropleth map with interactive functions
> ### Aliases: vcmap
> 
> ### ** Examples
> 
> data(vsfuk2012)
> shp.path <- file.path(system.file(package="vdmR"), "etc/shapes/kitakyu2012.shp")
> kk2012 <- dplyr::filter(vsfuk2012, CityCode<40110&CityCode>40100)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: :: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘vdmR-vignette.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Running examples in ‘veccompare-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: compare.vectors
> ### Title: Compare all combinations of vectors using set operations
> ### Aliases: compare.vectors
> 
> ### ** Examples
> 
> example <- veccompare::compare.vectors(veccompare::example.vectors.list)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/gtools/libs/gtools.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Calls: <Anonymous> ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vegalite’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: permute
Loading required package: lattice
Error: package or namespace load failed for ‘lattice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘lattice’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: taxlist
Error: package or namespace load failed for ‘taxlist’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/foreign/libs/foreign.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/foreign/libs/foreign.so: failed to map segment from shared object
Error: package ‘taxlist’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vein’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘velox’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘vembedr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: build_suggestion
> ### Title: Given a parse-list, generate an embed-list
> ### Aliases: build_suggestion
> 
> ### ** Examples
> 
> parse_video_url("https://youtu.be/1-vcErOPofQ?t=28s") %>%
+ build_suggestion()
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Calls: %>% ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘helpers.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running ‘test-all.R’ [0s/0s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testthat);
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vennLasso’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vennplot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vertexenum’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/vertexenum/libs/vertexenum.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/vertexenum/libs/vertexenum.so: failed to map segment from shared object
Execution halted
Running examples in ‘VertexSimilarity-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: VertexSimilarity
> ### Title: Vertex Similarity
> ### Aliases: VertexSimilarity
> 
> ### ** Examples
> 
> m <- matrix(c(1,0,0,0,0,1,1,1,1),ncol=3,nrow=3,byrow=TRUE)
> SimilarityMatrix <- VertexSimilarity(m,alpha=0.85)
Loading required namespace: igraph
Failed with error:  ‘unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/igraph/libs/igraph.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object’
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/igraph/libs/igraph.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/igraph/libs/igraph.so: failed to map segment from shared object
Calls: VertexSimilarity ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘VeryLargeIntegers’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vesselr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘VetResearchLMM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vetr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/vetr/libs/vetr.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/vetr/libs/vetr.so: failed to map segment from shared object
Execution halted
Running examples in ‘VFS-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: VFS-package
> ### Title: Vegetated Filter Strip and Erosion Model
> ### Aliases: VFS-package
> ### Keywords: package
> 
> ### ** Examples
> 
> 
> # state college GHCN data
> #
> # weather <- read.dly(system.file("extdata", "USC00368449.dly", package = "VFS"))
> data("weather") # same object
> 
> weather.param <- wth.param(weather, method="markov")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/class/libs/class.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/class/libs/class.so: failed to map segment from shared object
Calls: wth.param ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘VFS-modeling.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: stats4
Loading required package: VGAM
Loading required package: splines
Error: package or namespace load failed for ‘VGAM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/VGAM/libs/VGAM.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/VGAM/libs/VGAM.so: failed to map segment from shared object
Error: package ‘VGAM’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: stats4
Loading required package: splines
Error: package or namespace load failed for ‘VGAM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/VGAM/libs/VGAM.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/VGAM/libs/VGAM.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘VICmodel’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘viewshed3d’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘VIFCP’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/VIFCP/libs/VIFCP.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/VIFCP/libs/VIFCP.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘VIGoR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/VIGoR/libs/VIGoR.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/VIGoR/libs/VIGoR.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: tcltk
Loading required package: tkrplot
Loading required package: VIM
Loading required package: colorspace
Error: package or namespace load failed for ‘colorspace’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/colorspace/libs/colorspace.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/colorspace/libs/colorspace.so: failed to map segment from shared object
Error: package ‘colorspace’ could not be loaded
In addition: Warning message:
loading Rplot failed 
Execution halted
Running examples in ‘vimp-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: average_vim
> ### Title: Average multiple independent importance estimates
> ### Aliases: average_vim
> 
> ### ** Examples
> 
> library(SuperLearner)
Loading required package: nnls
Error: package or namespace load failed for ‘nnls’:
 .onLoad failed in loadNamespace() for 'nnls', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/nnls/libs/nnls.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/nnls/libs/nnls.so: failed to map segment from shared object
Error: package ‘nnls’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘introduction_to_vimp.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘VineCopula’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vinereg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Loading required package: sm
Error: package or namespace load failed for ‘sm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/sm/libs/sm.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/sm/libs/sm.so: failed to map segment from shared object

Error: processing vignette ‘methodComparison.Rnw’ failed with diagnostics:
 chunk 2 (label = simData) 
Error : package ‘sm’ could not be loaded
Execution halted
Running examples in ‘vip-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: vi
> ### Title: Variable Importance
> ### Aliases: vi
> 
> ### ** Examples
> 
> #
> # A projection pursuit regression example
> #
> 
> # Load the sample data
> data(mtcars)
> 
> # Fit a projection pursuit regression model
> mtcars.ppr <- ppr(mpg ~ ., data = mtcars, nterms = 1)
> 
> # Compute variable importance scores
> vi(mtcars.ppr, method = "ice")
Warning: Setting `method = "ice"` is experimental, use at your own risk!
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: vi ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Running examples in ‘viridisLite-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: viridis
> ### Title: Matplotlib 'viridis' and 'cividis' color map
> ### Aliases: viridis viridisMap magma inferno plasma cividis
> 
> ### ** Examples
> 
> library(ggplot2)
Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: viridisLite
Error: package or namespace load failed for ‘viridis’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘virustotal’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘visdat-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: gather_cor
> ### Title: (Internal) create a tidy dataframe of correlations suitable for
> ###   plotting
> ### Aliases: gather_cor
> 
> ### ** Examples
> 
> gather_cor(airquality)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: gather_cor ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘using_visdat.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: grid
Loading required package: chron
Error: package or namespace load failed for ‘chron’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/chron/libs/chron.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/chron/libs/chron.so: failed to map segment from shared object
Error: package ‘chron’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘visNetwork’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘visreg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘visTree’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/libs/mvtnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vistributions’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘visualFields’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘VisuClust-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: FuzzyPlot
> ### Title: Displays a Fuzzy Plot
> ### Aliases: FuzzyPlot
> 
> ### ** Examples
> 
> 
> library(cluster)
Error: package or namespace load failed for ‘cluster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cluster/libs/cluster.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cluster/libs/cluster.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘visvow’:
 .onLoad failed in loadNamespace() for ‘Cairo’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Cairo/libs/Cairo.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Cairo/libs/Cairo.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vita’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vlad’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘VLMC’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vmd’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘VNM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘vocaldia-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: printARFFfile
> ### Title: printARFFfile: Create arff files by creating and flattening
> ###   vocaldias
> ### Aliases: printARFFfile
> 
> ### ** Examples
> 
> data(vocdia)
> atdarff <- tempfile(pattern='vocaldia-', fileext='arff')
> printARFFfile(atddia, individual=TRUE, classcolumn='dx',
+               file=atdarff, noPauseTypes=FALSE)
Warning in getPauseType(prevspeaker, nextspeaker) :
  OOPS! Two consecutive Floor turns found. A coding error??
Warning in getPauseType(prevspeaker, nextspeaker) :
  OOPS! Two consecutive Floor turns found. A coding error??
> library("foreign")
Error: package or namespace load failed for ‘foreign’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/foreign/libs/foreign.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/foreign/libs/foreign.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vortexR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vosonSML’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘voteogram’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vote’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘votesys’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: lmerTest
Loading required package: lme4
Loading required package: Matrix
Error: package or namespace load failed for ‘Matrix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘Matrix’ could not be loaded
Execution halted
Running examples in ‘VoxR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: VoxR-package
> ### Title: Metrics extraction of trees from T-LiDAR data
> ### Aliases: VoxR-package VoxR
> ### Keywords: package 3d point cloud LiDAR
> 
> ### ** Examples
> 
> data(treecloud)
> 
> #-voxelisation using the vox function
> 
> treecloud_vox <- vox(treecloud,res=0.02)
> 
> #-visualisation
> 
> require(rgl)
Loading required package: rgl
Error: package or namespace load failed for ‘rgl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
> library(rgl)
Error: package or namespace load failed for ‘rgl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Running examples in ‘vpc-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: add_noise
> ### Title: Add noise / residual error to data
> ### Aliases: add_noise
> 
> ### ** Examples
> 
> library(dplyr)
Error: package or namespace load failed for ‘dplyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vqtl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘VRPM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vscc’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/teigen/libs/teigen.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/teigen/libs/teigen.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘vstsr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘VSURF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/randomForest/libs/randomForest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/randomForest/libs/randomForest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: foreach
Error: package or namespace load failed for ‘VTrack’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘vtree-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: vtree
> ### Title: vtree: Draw a variable tree
> ### Aliases: vtree
> 
> ### ** Examples
> 
> # A single-level hierarchy
> vtree(FakeData,"Severity")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Calls: vtree ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘vtree.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘W3CMarkupValidator’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘waccR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Running examples in ‘wakefield-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: as_integer
> ### Title: Convert a Factor Data Frame to Integer
> ### Aliases: as_integer
> ### Keywords: integer numeric
> 
> ### ** Examples
> 
> as_integer(r_series(likert_7, 5, 10))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: as_integer ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘walkalytics’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘walrus’:
 .onLoad failed in loadNamespace() for ‘rjson’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rjson/libs/rjson.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rjson/libs/rjson.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wand’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WARN’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘warpMix’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘washdata.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘waterData’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Running examples in ‘waterfalls-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: waterfall
> ### Title: Create waterfall charts
> ### Aliases: waterfall
> 
> ### ** Examples
> 
> waterfall(values = round(rnorm(5), 1), labels = letters[1:5], calc_total = TRUE)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: waterfall ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WaterML’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RJSONIO/libs/RJSONIO.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RJSONIO/libs/RJSONIO.so: failed to map segment from shared object
Execution halted
Running examples in ‘Wats-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: AnnotateData
> ### Title: Finds midpoints and bands for the within and between cycles.
> ### Aliases: AnnotateData
> 
> ### ** Examples
> 
> library(Wats)
> dsLinear <- CountyMonthBirthRate2005Version
> dsLinear <- dsLinear[dsLinear$CountyName=="oklahoma", ]
> dsLinear <- AugmentYearDataWithMonthResolution(dsLinear=dsLinear, dateName="Date")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Calls: AugmentYearDataWithMonthResolution ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Running ‘test-all.R’ [0s/0s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > # library(testthat)
  > library(Wats)
  > 
  > packages <- utils::installed.packages()
  > testthatVersion <- packages[packages[, 1]=="testthat", "Version"]
  > message("testthat package version: ", testthatVersion)
  testthat package version: 2.0.1
  > 
  > if(  testthatVersion >= "0.8" ) {
  +   testthat::test_check("Wats")
  + }
  Error in dyn.load(file, DLLpath = DLLpath, ...) : 
    unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Calls: :: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘MbrFigures.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WaveletArima’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/fracdiff/libs/fracdiff.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/fracdiff/libs/fracdiff.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: fracdiff
Error: package or namespace load failed for ‘fracdiff’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/fracdiff/libs/fracdiff.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/fracdiff/libs/fracdiff.so: failed to map segment from shared object
Error: package ‘fracdiff’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wavelets’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/wavelets/libs/wavelets.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/wavelets/libs/wavelets.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘waveslim’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/waveslim/libs/waveslim.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/waveslim/libs/waveslim.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wbs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/wbs/libs/wbs.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/wbs/libs/wbs.so: failed to map segment from shared object
Execution halted
Running examples in ‘wbstats-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: wbcountries
> ### Title: Download updated country and region information from World Bank
> ###   API
> ### Aliases: wbcountries
> 
> ### ** Examples
> 
> wbcountries()
Error in is.url(url) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Calls: wbcountries ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘Using_the_wbstats_package.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WCE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wCorr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wdman’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wdm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘weathercan’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘weathermetrics.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘webchem’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘webdriver’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WebGestaltR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: geojsonio
Error: package or namespace load failed for ‘geojsonio’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘geojsonio’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘webmockr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘webp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/webp/libs/webp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/webp/libs/webp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘webreadr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘webr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘webTRISr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: webtris_areas
> ### Title: Areas
> ### Aliases: webtris_areas
> 
> ### ** Examples
> 
> webtris_areas()
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Calls: webtris_areas ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘webuse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘webutils’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘weco’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/weco/libs/weco.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/weco/libs/weco.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wec’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WEE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WeibullR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘weibulltools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...

Error: processing vignette ‘Definition.Rnw’ failed with diagnostics:
 chunk 1 (label = curve) 
Error : package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘WeightIt-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: method_ebal
> ### Title: Entropy Balancing
> ### Aliases: method_ebal
> 
> ### ** Examples
> 
> library("cobalt")
Error: package or namespace load failed for ‘cobalt’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘WeightIt_A0_basic_use.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘welchADF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wellknown’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wevid’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wfe’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wfindr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: dynamicTreeCut
Loading required package: fastcluster
Error: package or namespace load failed for ‘fastcluster’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/fastcluster/libs/fastcluster.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/fastcluster/libs/fastcluster.so: failed to map segment from shared object
Error: package ‘fastcluster’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wgeesel’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WhatIf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wheatmap’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/colorspace/libs/colorspace.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/colorspace/libs/colorspace.so: failed to map segment from shared object
Execution halted
Running examples in ‘whereport-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: where_iata
> ### Title: IATA localization
> ### Aliases: where_iata
> 
> ### ** Examples
> 
> where_iata("YVR")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Calls: where_iata ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: clusterCrit
Error: package or namespace load failed for ‘clusterCrit’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/clusterCrit/libs/clusterCrit.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/clusterCrit/libs/clusterCrit.so: failed to map segment from shared object
Error: package ‘clusterCrit’ could not be loaded
Execution halted
Running examples in ‘whitechapelR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: end_round
> ### Title: Manage list of possible hideouts
> ### Aliases: end_round
> 
> ### ** Examples
> 
> possibilities = start_round(64)
> possibilities = take_a_step(possibilities,roads)
> possibilities = take_a_step(possibilities,roads,blocked=list(c(63,82),c(63,65)))
> possibilities = inspect_space(possibilities,space = c(29,30), clue = FALSE)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: inspect_space ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WhiteStripe’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘whoami’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘Whoapi.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  tabix/razf.c:188:2: warning: ‘strncpy’ output truncated before terminating nul copying 4 bytes from a string of the same length [-Wstringop-truncation]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/WhopGenome.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WhopGenome’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/WhopGenome/libs/WhopGenome.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/WhopGenome/libs/WhopGenome.so: failed to map segment from shared object
Execution halted
Running examples in ‘WHO-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_codes
> ### Title: Get all codes and metadata for WHO series
> ### Aliases: get_codes
> 
> ### ** Examples
> 
> codes <- get_codes()
Error in is.url(url) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Calls: get_codes ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘who_vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wicket’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: snowfall
Loading required package: snow
Error: package or namespace load failed for ‘widals’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/widals/libs/widals.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/widals/libs/widals.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘widyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Running examples in ‘WikidataQueryServiceR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: query_wikidata
> ### Title: Send one or more SPARQL queries to WDQS
> ### Aliases: query_wikidata
> 
> ### ** Examples
> 
> # R's versions and release dates:
> sparql_query <- 'SELECT DISTINCT
+   ?softwareVersion ?publicationDate
+ WHERE {
+   BIND(wd:Q206904 AS ?R)
+   ?R p:P348 [
+     ps:P348 ?softwareVersion;
+     pq:P577 ?publicationDate
+   ] .
+ }'
> query_wikidata(sparql_query)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Calls: query_wikidata ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WikidataR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WikipediR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WikiSocio’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wikisourcer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Running examples in ‘wikitaxa-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: wt_wiki_url_build
> ### Title: Build MediaWiki Page URL
> ### Aliases: wt_wiki_url_build
> 
> ### ** Examples
> 
> wt_wiki_url_build(wiki = "en", type = "wikipedia", page = "Malus domestica")
[1] "https://en.wikipedia.org/wiki/Malus_domestica"
> wt_wiki_url_build(
+   wt_wiki_url_parse("https://en.wikipedia.org/wiki/Malus_domestica"))
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Calls: wt_wiki_url_build ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘wikitaxa_vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wildcard’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wildlifeDI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wilson’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WindCurves’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jpeg/libs/jpeg.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jpeg/libs/jpeg.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘windfarmGA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/png/libs/png.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/png/libs/png.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘wiod.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: HDInterval
Error: package or namespace load failed for ‘wiqid’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WiSEBoot’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘withr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: with_db_connection
> ### Title: DBMS Connections which disconnect themselves.
> ### Aliases: with_db_connection local_db_connection
> 
> ### ** Examples
> 
> db <- tempfile()
> with_db_connection(
+   list(con = DBI::dbConnect(RSQLite::SQLite(), db)), {
+     DBI::dbWriteTable(con, "mtcars", mtcars)
+ })
Loading required namespace: DBI
Error in all(is.named(con)) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: with_db_connection ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘withr.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wkb’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WLreg’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wmtsa’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/splus2R/libs/splus2R.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/splus2R/libs/splus2R.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wmwpow’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WMWssp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘woeR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘womblR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘Introductory-Econometrics-Examples.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wordbankr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wordcloud2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: RColorBrewer
Error: package or namespace load failed for ‘wordcloud’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wordnet’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WordR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘workflowr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘worldmet’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: httr
Loading required package: plyr
Error: package or namespace load failed for ‘plyr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Error: package ‘plyr’ could not be loaded
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘worrms_vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wosr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WPKDE’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/WPKDE/libs/WPKDE.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/WPKDE/libs/WPKDE.so: failed to map segment from shared object
Execution halted
Error: package or namespace load failed for 'plyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
    /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
  Call sequence:
  16: stop(msg, call. = FALSE, domain = NA)
  15: value[[3L]](cond)
  14: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  13: tryCatchList(expr, classes, parentenv, handlers)
  12: tryCatch({
          attr(package, "LibPath") <- which.lib.loc
          ns <- loadNamespace(package, lib.loc)
          env <- attachNamespace(ns, pos = pos, deps)
      }, error = function(e) {
          P <- if (!is.null(cc <- conditionCall(e))) 
              paste(" in", deparse(cc)[1L])
          else ""
          msg <- gettextf("package or namespace load failed for %s%s:\n %s", 
              sQuote(package), P, conditionMessage(e))
          if (logical.return) 
              message(paste("Err
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wppExplorer’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wql’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wqs’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/truncnorm/libs/truncnorm.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/truncnorm/libs/truncnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wrangle’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Wrapped’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/truncnorm/libs/truncnorm.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/truncnorm/libs/truncnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wrassp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/wrassp/libs/wrassp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/wrassp/libs/wrassp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘writexl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/writexl/libs/writexl.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/writexl/libs/writexl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WRS2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wrspathrow’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so: failed to map segment from shared object
Execution halted
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so: failed to map segment from shared object
Calls: <Anonymous> ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so: failed to map segment from shared object
Calls: <Anonymous> ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so: failed to map segment from shared object
Calls: <Anonymous> ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so: failed to map segment from shared object
Calls: <Anonymous> ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so: failed to map segment from shared object
Calls: <Anonymous> ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so: failed to map segment from shared object
Calls: <Anonymous> ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Running examples in ‘wrswoR.benchmark-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: p_values_7
> ### Title: P-values for n = 7
> ### Aliases: p_values_7
> 
> ### ** Examples
> 
> head(p_values_7)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lazyeval/libs/lazyeval.so: failed to map segment from shared object
Calls: head ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wrswoR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wru’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wtest’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/wtest/libs/wtest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/wtest/libs/wtest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wTO’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/libs/datatable.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘wtss’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WufooR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WVPlots’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘WWR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/WWR/libs/WWR.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/WWR/libs/WWR.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: x12
Loading required package: x13binary
Error: package or namespace load failed for ‘x12’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Error: package ‘x12’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: x13binary
Error: package or namespace load failed for ‘x12’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Running examples in ‘x13binary-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: checkX13binary
> ### Title: Check if X-13ARIMA-SEATS Runs Properly
> ### Aliases: checkX13binary
> 
> ### ** Examples
> 
> checkX13binary()
sh: 1: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/x13binary/bin/x13ashtml: Permission denied
Warning in system(paste(x13.bin, file.path(tdir, "Testairline")), intern = TRUE) :
  running command '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/x13binary/bin/x13ashtml /home/hornik/tmp/scratch/Rtmpt6GHWw/Testairline' had status 126
Error in checkX13binary() : When running

  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/x13binary/bin/x13ashtml

the system returned the following message:



Execution halted
Running ‘simpleTest.R’ [0s/0s]
Running the tests in ‘tests/simpleTest.R’ failed.
Complete output:
  > x13binary::checkX13binary()
  sh: 1: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/x13binary/bin/x13ashtml: Permission denied
  Error in x13binary::checkX13binary() : When running
  
    /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/x13binary/bin/x13ashtml
  
  the system returned the following message:
  
  
  
  In addition: Warning message:
  In system(paste(x13.bin, file.path(tdir, "Testairline")), intern = TRUE) :
    running command '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/x13binary/bin/x13ashtml /home/hornik/tmp/scratch/RtmpG8pzo5/Testairline' had status 126
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xaringan’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xbreed’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/truncnorm/libs/truncnorm.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/truncnorm/libs/truncnorm.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘XBRL’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xdcclarge’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘x.ent’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xesreadR’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Running examples in ‘xfun-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: embed_file
> ### Title: Embed a file, multiple files, or directory on an HTML page
> ### Aliases: embed_file embed_dir embed_files
> 
> ### ** Examples
> 
> logo = file.path(R.home("doc"), "html", "logo.jpg")
> link = xfun::embed_file(logo, "R-logo.jpg", "Download R logo")
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mime/libs/mime.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mime/libs/mime.so: failed to map segment from shared object
Calls: <Anonymous> ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘xfun.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Found the following significant warnings:
  ./dmlc-core/include/dmlc/./parameter.h:997:25: warning: catching polymorphic type ‘const class std::out_of_range’ by value [-Wcatch-value=]
  ./dmlc-core/include/dmlc/./parameter.h:1022:25: warning: catching polymorphic type ‘const class std::out_of_range’ by value [-Wcatch-value=]
  ./dmlc-core/include/dmlc/././parameter.h:997:25: warning: catching polymorphic type ‘const class std::out_of_range’ by value [-Wcatch-value=]
  ./dmlc-core/include/dmlc/././parameter.h:1022:25: warning: catching polymorphic type ‘const class std::out_of_range’ by value [-Wcatch-value=]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/xgboost.Rcheck/00install.out’ for details.
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xgboost’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xhmmScripts’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/gtools/libs/gtools.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/gtools/libs/gtools.so: failed to map segment from shared object
Execution halted
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # the tests are realized using the "testthat" package
  > # and can be found in ./testthat
  > 
  > require(testthat)
  Loading required package: testthat
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  > test_check("XiMpLe")
  Error in test_check("XiMpLe") : could not find function "test_check"
  Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘XiMpLe_vignette.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xkcdcolors’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/FNN/libs/FNN.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/FNN/libs/FNN.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘XKCDdata’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘XLConnectJars’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: XLConnectJars
Error: package or namespace load failed for ‘XLConnectJars’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Error: package ‘XLConnectJars’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xLLiM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xlm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RJSONIO/libs/RJSONIO.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RJSONIO/libs/RJSONIO.so: failed to map segment from shared object
Execution halted
Running examples in ‘xlsimple-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: addXLsheetStd
> ### Title: Add a sheet to the Excel workbook
> ### Aliases: addXLsheetStd
> 
> ### ** Examples
> 
> XL.wb <- getXLsettings()
Error: .onLoad failed in loadNamespace() for 'rJava', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xlsx’:
 .onLoad failed in loadNamespace() for ‘rJava’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so: failed to map segment from shared object
Execution halted
Running examples in ‘xltabr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: add_body
> ### Title: Add a table body (a df) to the tab.
> ### Aliases: add_body
> 
> ### ** Examples
> 
> crosstab <- read.csv(system.file("extdata", "example_crosstab.csv", package="xltabr"))
> tab <- initialise()
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Calls: initialise ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xlutils3’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xmeta’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/glmmML/libs/glmmML.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/glmmML/libs/glmmML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xml2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘XML’:
 .onLoad failed in loadNamespace() for ‘XML’, details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XML/libs/XML.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XML/libs/XML.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xmlrpc2’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/base64enc/libs/base64enc.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/base64enc/libs/base64enc.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘XMRF’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XMRF/libs/XMRF.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XMRF/libs/XMRF.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xmrr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘XNomial’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XNomial/libs/XNomial.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/XNomial/libs/XNomial.so: failed to map segment from shared object
Execution halted
Running examples in ‘xplain-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: xplain
> ### Title: Showing interpretation information for the results of a function
> ### Aliases: xplain
> 
> ### ** Examples
> 
> 
> library(car)
Loading required package: carData
Error: package or namespace load failed for ‘car’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xptr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xptr/libs/xptr.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xptr/libs/xptr.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xray’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xRing’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘XRJulia’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xROI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘XRPython’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘XR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xseq’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xseq/libs/xseq.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/xseq/libs/xseq.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xsp’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xSub’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘OtherPackagesGallery.Rnw’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xtensor’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Running examples in ‘xtractomatic-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getInfo
> ### Title: Extract dataset information for a given dtype name or number
> ### Aliases: getInfo
> 
> ### ** Examples
> 
> getInfo('atsstamday')
Error in is.url(url) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Calls: getInfo ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xVA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jsonlite/libs/jsonlite.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xwf’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xxIRT’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘Examples.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘xyz’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘yaImpute’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/yaImpute/libs/yaImpute.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/yaImpute/libs/yaImpute.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘yakmoR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘yaml’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/yaml/libs/yaml.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/yaml/libs/yaml.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘yardstick’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: compiler
Error: package or namespace load failed for ‘ycinterextra’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rngWELL/libs/rngWELL.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rngWELL/libs/rngWELL.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ykmeans’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘yorkr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘YPInterimTesting’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ypr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘yuimaGUI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Error: processing vignette ‘yummlyr.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/stringi/libs/stringi.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘zbank’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/curl/libs/curl.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘unpacking-assignment.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ZeBook’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/deSolve/libs/deSolve.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/deSolve/libs/deSolve.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘zebu.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ZeligChoice’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘zeligverse’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘zenplots’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘zeroEQpart-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pzconf
> ### Title: Calculate Confidence Intervals for the Difference of Zero Order
> ###   and (Semi) Partial Correlation
> ### Aliases: pzconf
> 
> ### ** Examples
> 
> require(graphics)
> require(MASS)
Loading required package: MASS
Error: package or namespace load failed for ‘MASS’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
> # data
> set.seed(1111)
> mu <- rep(0,4)
> Sigma <- matrix(.2, nrow=4, ncol=4) + diag(4)*.8
> data <- mvrnorm(n=100, mu=mu, Sigma=Sigma)
Error in mvrnorm(n = 100, mu = mu, Sigma = Sigma) : 
  could not find function "mvrnorm"
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: scam
Loading required package: mgcv
Loading required package: nlme
Error: package or namespace load failed for ‘nlme’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Error: package ‘nlme’ could not be loaded
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘zFactor’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘zfa’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/zfa/libs/zfa.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/zfa/libs/zfa.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘vignettes.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘zic’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ZillowR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/bitops/libs/bitops.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ZIM’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Running examples in ‘zipfextR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getInitialValues
> ### Title: Calculates initial values for the parameters of the models.
> ### Aliases: getInitialValues
> 
> ### ** Examples
> 
> data <- rmoezipf(100, 2.5, 1.3)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Calls: rmoezipf ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ziphsmm’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ZipRadius’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘zip’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/zip/libs/zip.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/zip/libs/zip.so: failed to map segment from shared object
Execution halted
Running examples in ‘ZOIP-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pZOIP
> ### Title: ZOIP Distribution
> ### Aliases: pZOIP
> 
> ### ** Examples
> 
> library(ZOIP)
> pZOIP(q=0.5, mu = 0.2, sigma = 0.5, p0 = 0.2, p1 = 0.2,family='R-S',log = FALSE)
[1] 0.7385918
> pZOIP(q=0.5, mu = 0.2, sigma = 3, p0 = 0.2, p1 = 0.2,family='F-C',log = FALSE)
[1] 0.7385918
> pZOIP(q=0.5, mu = 0.6, sigma = 2.4, p0 = 0.2, p1 = 0.2,family='Original',log = FALSE)
[1] 0.7385918
> pZOIP(q=0.5, mu = 0.2, sigma = 3, p0 = 0.2, p1 = 0.2,family='Simplex',log = FALSE)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmutil/libs/rmutil.so':
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmutil/libs/rmutil.so: failed to map segment from shared object
Calls: pZOIP ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘zonator’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘zooaRchGUI’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MASS/libs/MASS.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Loading required package: mlearning
Error: package or namespace load failed for ‘mlearning’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/class/libs/class.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/class/libs/class.so: failed to map segment from shared object
Error: package ‘mlearning’ could not be loaded
Execution halted
Running ‘testall.R’ [0s/0s]
Running the tests in ‘tests/testall.R’ failed.
Complete output:
  > library("testthat")
  Error: package or namespace load failed for 'testthat' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so':
    /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so: failed to map segment from shared object
  Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘zoo’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/lattice/libs/lattice.so: failed to map segment from shared object
Execution halted
Error in re-building vignettes:
  ...
Error: processing vignette ‘anthropometry.Rmd’ failed with diagnostics:
unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘Zseq’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/gmp/libs/gmp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/gmp/libs/gmp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘zstdr’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ztable’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/digest/libs/digest.so: failed to map segment from shared object
Execution halted
Loading this package had a fatal error status code 1
Loading log:
Error: package or namespace load failed for ‘ztype’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so’:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/libs/Rcpp.so: failed to map segment from shared object
Execution halted
Packages in Depends field not imported from:
  ‘Rglpk’ ‘corrplot’ ‘lattice’ ‘rgl’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Namespaces in Imports field not imported from:
  ‘httr’ ‘progress’
  All declared Imports should be used.
installed size is  9.0Mb
  sub-directories of 1Mb or more:
    bootstrapping_example   1.2Mb
    libs                    6.1Mb
src/Makevars: SHLIB_OPENMP_CFLAGS is included in PKG_LIBS but linking is by C++
  src/Makevars.in: SHLIB_OPENMP_CFLAGS is included in PKG_LIBS but linking is by C++
Use of these macros is discussed in sect 1.2.1.1 of ‘Writing R
Extensions’. The macros for different languages may differ so the
matching macro must be used in PKG_CXXFLAGS (etc) and match that used
in PKG_LIBS (except for Fortran: see the manual).
File ‘abundant/libs/abundant.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘acc/libs/acc.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘rARPACK’ ‘sparseLDA’
  All declared Imports should be used.
File ‘ACDm/libs/ACDm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘acepack/libs/acepack.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    libs   4.8Mb
Package in Depends field not imported from: ‘MASS’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
acm: no visible global function definition for ‘read.table’
clusters: no visible global function definition for ‘write.matrix’
clusters: no visible global function definition for ‘dev.new’
clusters: no visible global function definition for ‘par’
clusters: no visible global function definition for ‘hist’
clusters: no visible global function definition for ‘legend’
clusters: no visible global function definition for ‘pdf’
clusters: no visible global function definition for ‘dev.off’
erra: no visible global function definition for ‘read.table’
erra: no visible global function definition for ‘pbeta’
Undefined global functions or variables:
  dev.new dev.off hist legend par pbeta pdf read.table write.matrix
Consider adding
  importFrom("grDevices", "dev.new", "dev.off", "pdf")
  importFrom("graphics", "hist", "legend", "par")
  importFrom("stats", "pbeta")
  importFrom("utils", "read.table")
to your NAMESPACE file.
Aggregate: no visible global function definition for ‘aggregate’
Aggregate: no visible binding for global variable ‘tail’
Aggregate: no visible binding for global variable ‘var’
cocktailEnsemble: no visible global function definition for ‘glm’
cocktailEnsemble: no visible global function definition for ‘binomial’
cocktailEnsemble: no visible global function definition for ‘step’
cocktailEnsemble: no visible binding for global variable ‘na.omit’
imputeMissings : <anonymous>: no visible global function definition for
  ‘median’
predict.cocktailEnsemble: no visible global function definition for
  ‘predict’
Undefined global functions or variables:
  aggregate binomial glm median na.omit predict step tail var
Consider adding
  importFrom("stats", "aggregate", "binomial", "glm", "median",
             "na.omit", "predict", "step", "var")
  importFrom("utils", "tail")
to your NAMESPACE file.
Rd file 'cocktailEnsemble.Rd':
  \examples lines wider than 100 characters:
     Credit <- data.frame(Credit[order(runif(nrow(Credit ))),])[1:100,c('V2','V3','V8','V11','V14','V15','Response')]

Rd file 'predict.cocktailEnsemble.Rd':
  \examples lines wider than 100 characters:
     Credit <- data.frame(Credit[order(runif(nrow(Credit ))),])[1:100,c('V2','V3','V8','V11','V14','V15','Response')]

These lines will be truncated in the PDF manual.
installed size is  7.8Mb
  sub-directories of 1Mb or more:
    libs   7.6Mb
File ‘acrt/libs/acrt.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 13.8Mb
  sub-directories of 1Mb or more:
    R  13.7Mb
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    data   5.4Mb
File ‘adagio/libs/adagio.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘plotly’ ‘shinydashboard’
  All declared Imports should be used.
Missing or unexported object: ‘devtools::clean_source’
'library' or 'require' calls to packages already attached by Depends:
  ‘MASS’ ‘SemiPar’ ‘nlme’
  Please remove these calls from your code.
asp: no visible global function definition for ‘as.formula’
asp: no visible global function definition for ‘var’
aspm: no visible binding for global variable ‘X.Declan’
aspm: no visible binding for global variable ‘Z.Jaida’
aspm: no visible binding for global variable ‘group.vec.Handan’
aspm: no visible global function definition for ‘as.formula’
aspm: no visible global function definition for ‘glm’
aspm: no visible global function definition for ‘binomial’
aspm: no visible global function definition for ‘poisson’
Undefined global functions or variables:
  X.Declan Z.Jaida as.formula binomial glm group.vec.Handan poisson var
Consider adding
  importFrom("stats", "as.formula", "binomial", "glm", "poisson", "var")
to your NAMESPACE file.

Found the following assignments to the global environment:
File ‘AdaptFit/R/aspm.R’:
  assign("group.vec.Handan", group.vec, pos = 1)
  assign("X.Declan", X, pos = 1)
  assign("Z.Jaida", Z, pos = 1)
Rd file 'asp.Rd':
  \usage lines wider than 90 characters:
                     spar.method="REML",omit.missing=NULL,niter=20,niter.var=50,tol=1e-06,returnFit=FALSE,weights=NULL,correlation=NULL,cont ... [TRUNCATED]

These lines will be truncated in the PDF manual.
File ‘adaptivetau/libs/adaptivetau.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'library' or 'require' calls to packages already attached by Depends:
  ‘MCMCpack’ ‘Matrix’ ‘coda’ ‘mvtnorm’ ‘parallel’ ‘spatstat’
  Please remove these calls from your code.
Package in Depends field not imported from: ‘lattice’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Rd file 'getpar.Rd':
  \examples lines wider than 100 characters:
     ## Plot the conditional error function of the Lehmacher-Wassmer (1999) type that runs through (p1,p2)=(0.3,0.7)

Rd file 'parconv.Rd':
  \examples lines wider than 100 characters:
     ## Obtain the parameter c for Fisher's combination test, using the local level 0.05 for the test after the second stage

Rd file 'pathCEF.Rd':
  \examples lines wider than 100 characters:
     ## Compare the tests by Bauer and Koehne (1994), Lehmacher and Wassmer (1999) and Vandemeulebroecke (2006)

Rd file 'tsT.Rd':
  \examples lines wider than 100 characters:
     ## An example of non-uniqueness: the maximal alpha1 is returned; any smaller value would also be valid

These lines will be truncated in the PDF manual.
Namespace in Imports field not imported from: ‘Benchmarking’
  All declared Imports should be used.
installed size is  7.8Mb
  sub-directories of 1Mb or more:
    R          1.4Mb
    data       2.8Mb
    pictures   2.1Mb
Namespace in Imports field not imported from: ‘filehash’
  All declared Imports should be used.
File ‘adimpro/libs/adimpro.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘AdMit/libs/AdMit.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    libs   6.1Mb
File ‘ADMMnet/libs/ADMMnet.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  7.4Mb
  sub-directories of 1Mb or more:
    libs   7.2Mb
Namespaces in Imports field not imported from:
  ‘fields’ ‘knitr’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DBI’ ‘assertthat’ ‘tibble’
  All declared Imports should be used.
closure_total_fair: no visible global function definition for ‘is’
closure_transitive: no visible global function definition for ‘is’
de_transitive: no visible global function definition for ‘is’
get_equivalence_classes: no visible global function definition for ‘is’
get_incomparable_pairs: no visible global function definition for ‘is’
get_independent_sets: no visible global function definition for ‘is’
is_reflexive: no visible global function definition for ‘is’
is_total: no visible global function definition for ‘is’
is_transitive: no visible global function definition for ‘is’
pareto2_estimate_mle: no visible global function definition for
  ‘uniroot’
pareto2_test_f: no visible global function definition for ‘qf’
pareto2_test_f: no visible global function definition for ‘pf’
plot.citfun: no visible global function definition for ‘plot’
plot.citfun: no visible global function definition for ‘par’
plot.citfun: no visible global function definition for ‘segments’
plot.citfun: no visible global function definition for ‘points’
plot_producer: no visible global function definition for ‘plot’
plot_producer: no visible global function definition for ‘par’
plot_producer: no visible global function definition for ‘segments’
plot_producer: no visible global function definition for ‘points’
rpareto2: no visible global function definition for ‘runif’
Undefined global functions or variables:
  is par pf plot points qf runif segments uniroot
Consider adding
  importFrom("graphics", "par", "plot", "points", "segments")
  importFrom("methods", "is")
  importFrom("stats", "pf", "qf", "runif", "uniroot")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
File ‘AGSDest/libs/AGSDest.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘ahaz/libs/ahaz.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Package unavailable to check Rd xrefs: ‘Starr’
File ‘AhoCorasickTrie/libs/AhoCorasickTrie.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘knitr’ ‘tidyr’
  All declared Imports should be used.
backfit.cox.interaction: no visible global function definition for
  ‘coxph’
backfit.lm.interaction: no visible global function definition for ‘lm’
backfit.logistic.interaction: no visible global function definition for
  ‘glm’
backfit.logistic.main: no visible global function definition for ‘glm’
cox.interaction: no visible global function definition for ‘coxph’
cv.cox.interaction: no visible global function definition for ‘coxph’
cv.cox.main: no visible global function definition for ‘coxph’
cv.lm.interaction: no visible global function definition for ‘lm’
cv.lm.main: no visible global function definition for ‘lm’
cv.logistic.interaction: no visible global function definition for
  ‘glm’
cv.logistic.main: no visible global function definition for ‘glm’
lm.interaction: no visible global function definition for ‘lm’
logistic.interaction: no visible global function definition for ‘glm’
logistic.main: no visible global function definition for ‘glm’
Undefined global functions or variables:
  coxph glm lm
Consider adding
  importFrom("stats", "glm", "lm")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘htmlwidgets’
  All declared Imports should be used.
File ‘akima/libs/akima.so’:
  Found no call to: ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
eval.blockdesign: no visible global function definition for
  ‘model.matrix’
eval.design: no visible global function definition for ‘model.matrix’
expand.formula: no visible global function definition for ‘as.formula’
model.matrix.formula: no visible global function definition for
  ‘model.matrix.default’
model.matrix.terms: no visible global function definition for
  ‘model.matrix.default’
optBlock : set.factors: no visible global function definition for ‘C’
optBlock : remove.nesting: no visible global function definition for
  ‘as.formula’
optBlock: no visible global function definition for ‘formula’
optBlock: no visible global function definition for ‘model.matrix’
optFederov: no visible global function definition for ‘formula’
optFederov: no visible global function definition for ‘model.matrix’
optMonteCarlo : RandomLevels: no visible global function definition for
  ‘runif’
optMonteCarlo : RandomMixture: no visible global function definition
  for ‘rexp’
optMonteCarlo : expand: no visible global function definition for
  ‘model.matrix’
optMonteCarlo: no visible global function definition for ‘as.formula’
Undefined global functions or variables:
  C as.formula formula model.matrix model.matrix.default rexp runif
Consider adding
  importFrom("stats", "C", "as.formula", "formula", "model.matrix",
             "model.matrix.default", "rexp", "runif")
to your NAMESPACE file.
File ‘AlgDesign/libs/AlgDesign.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘rjson’ ‘xml2’
  All declared Imports should be used.
Found the following apparent S3 methods exported but not registered:
  print.spectral
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
hierarchical: no visible global function definition for ‘terms’
hierarchical: no visible global function definition for ‘loglin’
hierarchical: no visible global function definition for ‘dmultinom’
markov: no visible global function definition for ‘download.file’
metropolis: no visible global function definition for ‘runif’
mpolyListToMat : <anonymous>: no visible global function definition for
  ‘runif’
polyOptim: no visible global function definition for ‘deriv’
print.hierarchical: no visible binding for global variable ‘sd’
spectral : summarize: no visible global function definition for ‘sd’
subsets : <anonymous>: no visible global function definition for
  ‘combn’
Undefined global functions or variables:
  combn deriv dmultinom download.file loglin runif sd terms
Consider adding
  importFrom("stats", "deriv", "dmultinom", "loglin", "runif", "sd",
             "terms")
  importFrom("utils", "combn", "download.file")
to your NAMESPACE file.
File ‘algstat/libs/algstat.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
gascuel: no visible global function definition for ‘optim’
Undefined global functions or variables:
  optim
Consider adding
  importFrom("stats", "optim")
to your NAMESPACE file.
File ‘ALKr/libs/ALKr.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
allanVarSelect: no visible global function definition for ‘read.csv’
fitvbiglm: no visible global function definition for ‘read.csv’
fitvbiglm: no visible global function definition for ‘update’
getbestchunksize: no visible global function definition for ‘read.csv’
getbestchunksize: no visible global function definition for
  ‘object.size’
predictvbiglm: no visible global function definition for ‘read.csv’
predictvbiglm: no visible global function definition for ‘predict’
predictvbiglm: no visible global function definition for
  ‘weighted.mean’
readinbigdata : <anonymous>: no visible global function definition for
  ‘read.csv’
Undefined global functions or variables:
  object.size predict read.csv update weighted.mean
Consider adding
  importFrom("stats", "predict", "update", "weighted.mean")
  importFrom("utils", "object.size", "read.csv")
to your NAMESPACE file.
prepare_Rd: allan-package.Rd:49-51: Dropping empty section \seealso
prepare_Rd: allanVarSelect.Rd:59-60: Dropping empty section \details
prepare_Rd: allanVarSelect.Rd:66-67: Dropping empty section \references
prepare_Rd: allanVarSelect.Rd:78-79: Dropping empty section \seealso
prepare_Rd: fitvbiglm.Rd:38-39: Dropping empty section \details
prepare_Rd: fitvbiglm.Rd:49-50: Dropping empty section \note
prepare_Rd: fitvbiglm.Rd:43-44: Dropping empty section \references
prepare_Rd: fitvbiglm.Rd:53-54: Dropping empty section \seealso
prepare_Rd: getbestchunksize.Rd:35-36: Dropping empty section \details
prepare_Rd: getbestchunksize.Rd:46-47: Dropping empty section \note
prepare_Rd: getbestchunksize.Rd:40-41: Dropping empty section \references
prepare_Rd: getbestchunksize.Rd:50-51: Dropping empty section \seealso
prepare_Rd: predictvbiglm.Rd:44-45: Dropping empty section \details
prepare_Rd: predictvbiglm.Rd:56-57: Dropping empty section \note
prepare_Rd: predictvbiglm.Rd:50-51: Dropping empty section \references
prepare_Rd: predictvbiglm.Rd:60-61: Dropping empty section \seealso
prepare_Rd: readinbigdata.Rd:42-43: Dropping empty section \note
prepare_Rd: readinbigdata.Rd:45-46: Dropping empty section \seealso
File ‘allelic/libs/allelic.so’:
  Found ‘stderr’, possibly from ‘stderr’ (C)
    Object: ‘newallelic.o’
File ‘allelic/libs/allelic.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.
It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘alphabetr/libs/alphabetr.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘alphahull/libs/alphahull.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 13.0Mb
  sub-directories of 1Mb or more:
    libs  12.4Mb
Namespaces in Imports field not imported from:
  ‘base’ ‘methods’ ‘nlme’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘devtools’
  All declared Imports should be used.
installed size is 15.8Mb
  sub-directories of 1Mb or more:
    data  15.6Mb
amltest: no visible global function definition for ‘var’
amltest: no visible global function definition for ‘optim’
amltest: no visible global function definition for ‘lm’
cleanclust: no visible global function definition for ‘cor’
cleanclust: no visible global function definition for ‘hclust’
cleanclust: no visible global function definition for ‘as.dist’
cleanclust: no visible global function definition for ‘cutree’
Undefined global functions or variables:
  as.dist cor cutree hclust lm optim var
Consider adding
  importFrom("stats", "as.dist", "cor", "cutree", "hclust", "lm",
             "optim", "var")
to your NAMESPACE file.
Namespaces in Imports field not imported from:
  ‘devtools’ ‘gridExtra’
  All declared Imports should be used.
AMOEBA : Classi: no visible global function definition for ‘sd’
Undefined global functions or variables:
  sd
Consider adding
  importFrom("stats", "sd")
to your NAMESPACE file.
random.init.MLPneuron: no visible global function definition for
  ‘runif’
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
File ‘AMORE/libs/AMORE.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘Rcpp’ ‘magrittr’
  All declared Imports should be used.
installed size is 27.3Mb
  sub-directories of 1Mb or more:
    libs  25.9Mb
File ‘anchors/libs/anchors.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Packages in Depends field not imported from:
  ‘discretization’ ‘foreign’ ‘functional’ ‘stringr’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
aode: no visible global function definition for ‘Compose’
mdl: no visible global function definition for ‘cutPoints’
setVar: no visible global function definition for ‘Compose’
Undefined global functions or variables:
  Compose cutPoints
Namespaces in Imports field not imported from:
  ‘knitr’ ‘rgdal’
  All declared Imports should be used.
installed size is 23.4Mb
  sub-directories of 1Mb or more:
    libs  23.2Mb
Warning: no function found corresponding to methods exports from ‘anoint’ for: ‘show’

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    help   4.7Mb
Namespace in Imports field not imported from: ‘caret’
  All declared Imports should be used.
src/Makevars: SHLIB_OPENMP_CXXFLAGS is included in PKG_CXXFLAGS but not in PKG_LIBS
  src/Makevars: SHLIB_OPENMP_CFLAGS is included in PKG_LIBS but linking is by C++
  src/Makevars.win: SHLIB_OPENMP_CXXFLAGS is included in PKG_CXXFLAGS but not in PKG_LIBS
  src/Makevars.win: SHLIB_OPENMP_CFLAGS is included in PKG_LIBS but linking is by C++
Use of these macros is discussed in sect 1.2.1.1 of ‘Writing R
Extensions’. The macros for different languages may differ so the
matching macro must be used in PKG_CXXFLAGS (etc) and match that used
in PKG_LIBS (except for Fortran: see the manual).
installed size is 35.4Mb
  sub-directories of 1Mb or more:
    R  35.3Mb
aw_map: no visible global function definition for ‘browseURL’
Undefined global functions or variables:
  browseURL
Consider adding
  importFrom("utils", "browseURL")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘tibble’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘curl’ ‘httr’
  All declared Imports should be used.
Packages in Depends field not imported from:
  ‘boot’ ‘lme4’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Namespace in Imports field not imported from: ‘pls’
  All declared Imports should be used.
installed size is  9.5Mb
  sub-directories of 1Mb or more:
    libs   9.3Mb
TSPM: no visible global function definition for ‘glm’
TSPM: no visible binding for global variable ‘poisson’
TSPM: no visible global function definition for ‘hatvalues’
TSPM: no visible global function definition for ‘residuals’
TSPM: no visible global function definition for ‘deviance’
TSPM: no visible global function definition for ‘qchisq’
TSPM: no visible global function definition for ‘qf’
TSPM: no visible global function definition for ‘pf’
TSPM: no visible global function definition for ‘pchisq’
TSPM: no visible global function definition for ‘p.adjust’
norm.inttable: no visible global function definition for ‘median’
norm.inttable : <anonymous>: no visible global function definition for
  ‘quantile’
saint_permF: no visible global function definition for ‘read.table’
saint_permF: no visible global function definition for ‘write.table’
saint_permF: no visible global function definition for ‘write.csv2’
tspm_apms: no visible global function definition for ‘read.table’
varFilter : <anonymous>: no visible global function definition for
  ‘median’
varFilter: no visible global function definition for ‘median’
varFilter: no visible global function definition for ‘quantile’
Undefined global functions or variables:
  deviance glm hatvalues median p.adjust pchisq pf poisson qchisq qf
  quantile read.table residuals write.csv2 write.table
Consider adding
  importFrom("stats", "deviance", "glm", "hatvalues", "median",
             "p.adjust", "pchisq", "pf", "poisson", "qchisq", "qf",
             "quantile", "residuals")
  importFrom("utils", "read.table", "write.csv2", "write.table")
to your NAMESPACE file.
File ‘appell/libs/appell.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
apple: no visible global function definition for ‘ginv’
apple: no visible global function definition for ‘runif’
deri: no visible global function definition for ‘ginv’
logit: no visible global function definition for ‘qlogis’
plot.apple: no visible global function definition for ‘matplot’
plot.apple: no visible global function definition for ‘lines’
y.app: no visible global function definition for ‘ginv’
Undefined global functions or variables:
  ginv lines matplot qlogis runif
Consider adding
  importFrom("graphics", "lines", "matplot")
  importFrom("stats", "qlogis", "runif")
to your NAMESPACE file.
prepare_Rd: plot.apple.Rd:51-53: Dropping empty section \examples
File ‘apple/libs/apple.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘testthat’
  All declared Imports should be used.
runAPSIM: warning in scan(reports_file[i], "", sep = "", skip =
  length(temp), nline = 1): partial argument match of 'nline' to
  'nlines'
runAPSIM: no visible global function definition for ‘write.table’
runAPSIM: no visible global function definition for ‘read.table’
Undefined global functions or variables:
  read.table write.table
Consider adding
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.
kristen.colors: no visible global function definition for
  ‘colorRampPalette’
kristen.colors: no visible global function definition for ‘grey’
plot3d.points: no visible global function definition for ‘heat.colors’
plot3d.points: no visible global function definition for ‘plot’
ragged.image: no visible global function definition for ‘heat.colors’
ragged.image: no visible global function definition for ‘image’
scatterplot.density: no visible global function definition for ‘grey’
scatterplot.density: no visible global function definition for ‘image’
scatterplot.density: no visible global function definition for ‘abline’
scatterplot.density: no visible global function definition for ‘lm’
scatterplot.density: no visible global function definition for ‘legend’
vertical.image.legend: no visible global function definition for ‘par’
vertical.image.legend: no visible global function definition for
  ‘image’
vertical.image.legend: no visible global function definition for ‘axis’
vertical.image.legend: no visible global function definition for ‘box’
Undefined global functions or variables:
  abline axis box colorRampPalette grey heat.colors image legend lm par
  plot
Consider adding
  importFrom("grDevices", "colorRampPalette", "grey", "heat.colors")
  importFrom("graphics", "abline", "axis", "box", "image", "legend",
             "par", "plot")
  importFrom("stats", "lm")
to your NAMESPACE file.
Found the following significant warnings:
  am.c:275:9: warning: comparison of array 'readByte' not equal to a null pointer is always true [-Wtautological-pointer-compare]
See ‘/data/gannet/ripley/R/packages/tests-clang/aqr.Rcheck/00install.out’ for details.
aqDayOfWeekStat: no visible global function definition for ‘index’
aqDropHour: no visible global function definition for ‘index’
aqFilterOHLCSD: no visible binding for global variable ‘sd’
aqHourIndex: no visible global function definition for ‘index’
aqHourlyStat: no visible global function definition for ‘index’
aqLoadOHLC: no visible global function definition for ‘read.csv’
aqLoadSeriesField: no visible global function definition for ‘read.csv’
aqLoadXtsFromCsv: no visible global function definition for ‘read.csv2’
aqLoadYahooEOD: no visible global function definition for ‘read.csv’
aqSaveXtsToCsv: no visible global function definition for ‘write.csv2’
aqStoreSeriesField: no visible global function definition for ‘index’
aqStoreSeriesField: no visible global function definition for
  ‘capture.output’
aqStoreSeriesField: no visible global function definition for
  ‘write.table’
Undefined global functions or variables:
  capture.output index read.csv read.csv2 sd write.csv2 write.table
Consider adding
  importFrom("stats", "sd")
  importFrom("utils", "capture.output", "read.csv", "read.csv2",
             "write.csv2", "write.table")
to your NAMESPACE file.
File ‘aqr/libs/aqr.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
AR1seg_func: no visible global function definition for ‘median’
Undefined global functions or variables:
  median
Consider adding
  importFrom("stats", "median")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘DT’
  All declared Imports should be used.
'library' or 'require' calls in package code:
  ‘MASS’ ‘TSP’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Namespaces in Imports field not imported from:
  ‘purrr’ ‘shinyBS’ ‘shinydashboard’ ‘shinyjs’
  All declared Imports should be used.
File ‘arf3DS4/libs/arf3DS4.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
arfimaOLS: no visible global function definition for ‘lm’
arfimaPrep: no visible global function definition for ‘aggregate’
arfimaPrep: no visible global function definition for ‘arima’
arfimaPrep: no visible global function definition for ‘lm’
arfimaPrep: no visible global function definition for ‘residuals’
Undefined global functions or variables:
  aggregate arima lm residuals
Consider adding
  importFrom("stats", "aggregate", "arima", "lm", "residuals")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘sp’
  All declared Imports should be used.
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    R             2.3Mb
    help          1.1Mb
    testScripts   1.3Mb
File ‘arrApply/libs/arrApply.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
binarize.array: no visible binding for global variable ‘sd’
mskmeans: no visible global function definition for ‘kmeans’
Undefined global functions or variables:
  kmeans sd
Consider adding
  importFrom("stats", "kmeans", "sd")
to your NAMESPACE file.
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    extdata   3.7Mb
    libs      1.2Mb
'library' or 'require' calls in package code:
  ‘cacheSweave’ ‘weaver’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: ‘methods’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
':::' call which should be '::': ‘utils:::RtangleSetup’
  See the note in ?`:::` about the use of this operator.
Unexported objects imported by ':::' calls:
  ‘survival:::survmean’ ‘utils:::.SweaveValidFilenameRegexp’
  ‘utils:::RtangleFinish’ ‘utils:::RtangleRuncode’
  ‘utils:::SweaveParseOptions’
  See the note in ?`:::` about the use of this operator.
Unavailable namespace imported from by a ':::' call: ‘cacheSweave’
  See the note in ?`:::` about the use of this operator.
File ‘ash/libs/ash.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'library' or 'require' calls to packages already attached by Depends:
  ‘Hmisc’ ‘splancs’
  Please remove these calls from your code.
Packages in Depends field not imported from:
  ‘Hmisc’ ‘shapefiles’ ‘splancs’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Rd file 'calc_box.Rd':
  \examples lines wider than 100 characters:
     ## plot_box by default takes as input the result produced from the calc_box, read from the current workspace. 

Rd file 'calc_sdd.Rd':
  \examples lines wider than 100 characters:
     ## plot_sdd by default takes as input the result produced from the calc_sdd, read from the current workspace. 

Rd file 'calc_sde.Rd':
  \examples lines wider than 100 characters:
     ## plot_sde by default takes as input the result produced from the calc_sde, read from the current workspace. 

Rd file 'centre.Rd':
  \examples lines wider than 100 characters:
     ## plot_centres by default takes as input the result produced from mean_centre, median centre, CF, CF2PTS, and CMD, read from the curre ... [TRUNCATED]

Rd file 'plot_box.Rd':
  \examples lines wider than 100 characters:
     ## plot_box by default takes as input the result produced from the calc_box, read from the current workspace. 

Rd file 'plot_centres.Rd':
  \examples lines wider than 100 characters:
     ## plot_centres by default takes as input the result produced from CF, CF2PTS, and CMD, read from the current workspace. 

Rd file 'plot_sdd.Rd':
  \examples lines wider than 100 characters:
     ## plot_sdd by default takes as input the result produced from the calc_sdd, read from the current workspace. 

Rd file 'plot_sde.Rd':
  \examples lines wider than 100 characters:
     ## plot_sde by default takes as input the result produced from the calc_sde, read from the current workspace. 

These lines will be truncated in the PDF manual.
ASP.Score: no visible global function definition for ‘pnorm’
Graphs.Bayesian: no visible global function definition for ‘dev.new’
colorhex: no visible global function definition for ‘gray’
colorhex: no visible global function definition for ‘rgb’
Undefined global functions or variables:
  dev.new gray pnorm rgb
Consider adding
  importFrom("grDevices", "dev.new", "gray", "rgb")
  importFrom("stats", "pnorm")
to your NAMESPACE file.
File ‘ASPBay/libs/ASPBay.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘assist/libs/assist.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Package in Depends field not imported from: ‘mvtnorm’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
CALPHA: no visible global function definition for ‘dbinom’
CALPHA: no visible global function definition for ‘pchisq’
CAST: no visible global function definition for ‘fisher.test’
CAST: no visible global function definition for ‘chisq.test’
CMC: no visible global function definition for ‘pf’
MULTI: no visible global function definition for ‘complete.cases’
RVT1: no visible global function definition for ‘pchisq’
RVT2: no visible global function definition for ‘pchisq’
RWAS: no visible global function definition for ‘pnorm’
SKAT: no visible global function definition for ‘dbeta’
SKAT: no visible global function definition for ‘pchisq’
TTEST: no visible global function definition for ‘complete.cases’
TTEST: no visible global function definition for ‘pf’
WST: no visible global function definition for ‘mvfft’
WST: no visible global function definition for ‘pnorm’
my_cmc_method: no visible global function definition for
  ‘complete.cases’
my_getUV: no visible global function definition for ‘complete.cases’
my_orwss_method: no visible global function definition for ‘sd’
my_rarecov_method: no visible global function definition for
  ‘chisq.test’
my_rbt_method: no visible global function definition for ‘ppois’
my_score_method: no visible global function definition for ‘pchisq’
my_ssu_method: no visible global function definition for ‘pchisq’
my_ssuw_method: no visible global function definition for ‘pchisq’
my_sum_method: no visible global function definition for ‘pchisq’
my_uminp_method: no visible global function definition for ‘pchisq’
my_uminp_method: no visible global function definition for ‘pmvnorm’
Undefined global functions or variables:
  chisq.test complete.cases dbeta dbinom fisher.test mvfft pchisq pf
  pmvnorm pnorm ppois sd
Consider adding
  importFrom("stats", "chisq.test", "complete.cases", "dbeta", "dbinom",
             "fisher.test", "mvfft", "pchisq", "pf", "pnorm", "ppois",
             "sd")
to your NAMESPACE file.
File ‘AssotesteR/libs/AssotesteR.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
VPC.graph : findQuantile: no visible global function definition for
  ‘quantile’
VPC.graph : findQuantileCI : <anonymous>: no visible global function
  definition for ‘quantile’
asVPC.binW: no visible global function definition for ‘median’
asVPC.binW : <anonymous>: no visible global function definition for
  ‘quantile’
asVPC.binW: no visible global function definition for ‘quantile’
asVPC.distanceW: no visible global function definition for ‘median’
asVPC.distanceW : <anonymous>: no visible global function definition
  for ‘quantile’
asVPC.distanceW: no visible global function definition for ‘quantile’
makeCOVbin: no visible global function definition for ‘quantile’
makeCOVbin: no visible global function definition for ‘median’
read_Simdata: no visible global function definition for ‘read.table’
Undefined global functions or variables:
  median quantile read.table
Consider adding
  importFrom("stats", "median", "quantile")
  importFrom("utils", "read.table")
to your NAMESPACE file.
Packages in Depends field not imported from:
  ‘cairoDevice’ ‘gWidgetsRGtk2’ ‘partitions’ ‘proto’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
LHSdesign: no visible global function definition for ‘qnorm’
LHSdesign: no visible global function definition for ‘qunif’
LHSdesign: no visible global function definition for ‘qt’
MCdesign: no visible global function definition for ‘rnorm’
MCdesign: no visible global function definition for ‘runif’
MCdesign: no visible global function definition for ‘rt’
Undefined global functions or variables:
  qnorm qt qunif rnorm rt runif
Consider adding
  importFrom("stats", "qnorm", "qt", "qunif", "rnorm", "rt", "runif")
to your NAMESPACE file.
PlotAtm.lin : scale_image: no visible global function definition for
  ‘heat.colors’
PlotAtm.lin : scale_image: no visible global function definition for
  ‘par’
PlotAtm.lin : scale_image: no visible global function definition for
  ‘sd’
PlotAtm.lin : scale_image: no visible global function definition for
  ‘approx’
PlotAtm.lin : scale_image: no visible global function definition for
  ‘image’
PlotAtm.lin : scale_image: no visible global function definition for
  ‘axis’
PlotAtm.lin : scale_image: no visible global function definition for
  ‘mtext’
PlotAtm.lin: no visible global function definition for ‘arrows’
PlotAtm.lin: no visible global function definition for ‘text’
PlotAtm.lin: no visible global function definition for ‘polygon’
sky.colors: no visible global function definition for ‘rgb’
Undefined global functions or variables:
  approx arrows axis heat.colors image mtext par polygon rgb sd text
Consider adding
  importFrom("grDevices", "heat.colors", "rgb")
  importFrom("graphics", "arrows", "axis", "image", "mtext", "par",
             "polygon", "text")
  importFrom("stats", "approx", "sd")
to your NAMESPACE file.
Rd file 'MakeArrivals.lin.Rd':
  \examples lines wider than 100 characters:
     MakeArrivals.lin(xs = c(100, 150), ys = c(100, 150), zs = c(100, 150), xr = 0, yr = 0, zr = 0, dt = 0.01, nt = 100, timing = c(0, 0), A ... [TRUNCATED]

Rd file 'MakeAtmList.lin.Rd':
  \usage lines wider than 90 characters:
     MakeAtmList.lin(z0 = 0, c0 = 343, gc = 0, wx0 = 0, gwx = 0, wy0 = 0, gwy = 0, rho0 = 1.2929 * exp(-z0/6800), grho = -0.0001901323 * exp ... [TRUNCATED]

These lines will be truncated in the PDF manual.
File ‘AtmRay/libs/AtmRay.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘attrCUSUM/libs/attrCUSUM.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following apparent S3 methods exported but not registered:
  summary.attribrisk
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
attribrisk: no visible global function definition for ‘terms’
attribrisk: no visible global function definition for ‘.getXlevels’
attribrisk: no visible global function definition for ‘model.response’
attribrisk: no visible global function definition for ‘model.weights’
attribrisk: no visible global function definition for ‘model.offset’
attribrisk: no visible global function definition for ‘model.matrix’
attribrisk: no visible global function definition for ‘model.frame’
attribrisk.fit: no visible global function definition for ‘glm.fit’
attribrisk.fit: no visible global function definition for ‘binomial’
attribrisk.fit: no visible global function definition for ‘glm.control’
attribrisk.fit: no visible global function definition for ‘coef’
attribrisk.fit: no visible global function definition for
  ‘coefficients’
attribrisk_boot: no visible global function definition for ‘var’
print.attribrisk: no visible global function definition for ‘qnorm’
summary.attribrisk: no visible global function definition for ‘hasArg’
summary.attribrisk: no visible global function definition for ‘var’
Undefined global functions or variables:
  .getXlevels binomial coef coefficients glm.control glm.fit hasArg
  model.frame model.matrix model.offset model.response model.weights
  qnorm terms var
Consider adding
  importFrom("methods", "hasArg")
  importFrom("stats", ".getXlevels", "binomial", "coef", "coefficients",
             "glm.control", "glm.fit", "model.frame", "model.matrix",
             "model.offset", "model.response", "model.weights", "qnorm",
             "terms", "var")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
installed size is  9.7Mb
  sub-directories of 1Mb or more:
    data   9.6Mb
AUCRFcv: no visible global function definition for ‘predict’
plot.AUCRF: no visible global function definition for ‘par’
plot.AUCRF: no visible global function definition for ‘dotchart’
plot.AUCRF: no visible global function definition for ‘title’
plot.AUCRF: no visible global function definition for ‘text’
Undefined global functions or variables:
  dotchart par predict text title
Consider adding
  importFrom("graphics", "dotchart", "par", "text", "title")
  importFrom("stats", "predict")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘tidyr’
  All declared Imports should be used.
Packages in Depends field not imported from:
  ‘RJSONIO’ ‘hexbin’ ‘plotrix’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
audioHist: no visible global function definition for ‘hist’
audioHist: no visible global function definition for ‘rescale’
audioHist: no visible global function definition for ‘toJSON’
audioScatter: no visible binding for global variable ‘formula’
audioScatter: no visible global function definition for ‘hexbinplot’
audioScatter: no visible global function definition for ‘cor’
audioScatter: no visible global function definition for ‘toJSON’
audioSplom: no visible global function definition for ‘hexplom’
audioSplom: no visible binding for global variable ‘BTY’
audioSplom: no visible binding for global variable ‘panel.hexboxplot’
audioSplom: no visible global function definition for ‘combn’
audioSplom : <anonymous>: no visible global function definition for
  ‘cor’
audioSplom : <anonymous>: no visible global function definition for
  ‘toJSON’
audiolyzRcheck: no visible global function definition for
  ‘download.file’
audiolyzRcheck: no visible global function definition for ‘unzip’
matricize: no visible global function definition for ‘hexbin’
panel.audiolyzR: no visible global function definition for
  ‘panel.hexbinplot’
Undefined global functions or variables:
  BTY combn cor download.file formula hexbin hexbinplot hexplom hist
  panel.hexbinplot panel.hexboxplot rescale toJSON unzip
Consider adding
  importFrom("graphics", "hist")
  importFrom("stats", "cor", "formula")
  importFrom("utils", "combn", "download.file", "unzip")
to your NAMESPACE file.
File ‘audio/libs/audio.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘abind’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘MASS’ ‘broom’ ‘diptest’ ‘ggplot2’ ‘hexbin’ ‘moments’
  All declared Imports should be used.
installed size is 13.6Mb
  sub-directories of 1Mb or more:
    libs  13.4Mb
'library' or 'require' calls in package code:
  ‘ggplot2’ ‘gpclib’ ‘maptools’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Namespace in Imports field not imported from: ‘igraph’
  All declared Imports should be used.
gLog.ep: no visible global function definition for ‘quantile’
gedestp: no visible global function definition for ‘na.omit’
gedestp: no visible global function definition for ‘optim’
gets.mean: no visible global function definition for ‘start’
gets.mean: no visible global function definition for ‘end’
gets.mean: no visible global function definition for ‘window’
gets.mean: no visible global function definition for ‘pt’
gets.mean: no visible global function definition for ‘Box.test’
gets.mean: no visible global function definition for ‘pchisq’
gets.vol: no visible global function definition for ‘start’
gets.vol: no visible global function definition for ‘end’
gets.vol: no visible global function definition for ‘window’
gets.vol: no visible global function definition for ‘pt’
gets.vol: no visible global function definition for ‘Box.test’
gets.vol: no visible global function definition for ‘pchisq’
jb.test: no visible global function definition for ‘pchisq’
skewness.test: no visible global function definition for ‘pchisq’
sm: no visible global function definition for ‘start’
sm: no visible global function definition for ‘end’
sm: no visible global function definition for ‘window’
sm: no visible global function definition for ‘pt’
sm: no visible global function definition for ‘pchisq’
sm: no visible global function definition for ‘Box.test’
Undefined global functions or variables:
  Box.test end na.omit optim pchisq pt quantile start window
Consider adding
  importFrom("stats", "Box.test", "end", "na.omit", "optim", "pchisq",
             "pt", "quantile", "start", "window")
to your NAMESPACE file.
Namespaces in Imports field not imported from:
  ‘Rcpp’ ‘jsonlite’
  All declared Imports should be used.
installed size is 10.8Mb
  sub-directories of 1Mb or more:
    java  10.6Mb
installed size is 67.2Mb
  sub-directories of 1Mb or more:
    java  67.2Mb
src/Makevars: SHLIB_OPENMP_FFLAGS is included in PKG_FFLAGS without any fixed-form Fortran files
Use of these macros is discussed in sect 1.2.1.1 of ‘Writing R
Extensions’. The macros for different languages may differ so the
matching macro must be used in PKG_CXXFLAGS (etc) and match that used
in PKG_LIBS (except for Fortran: see the manual).
Namespace in Imports field not imported from: ‘jsonlite’
  All declared Imports should be used.
File ‘BaBooN/libs/BaBooN.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  9.1Mb
  sub-directories of 1Mb or more:
    data   8.9Mb
installed size is 10.7Mb
  sub-directories of 1Mb or more:
    data   6.0Mb
    libs   3.0Mb
BACprior.CV: no visible global function definition for ‘na.fail’
BACprior.CV: no visible global function definition for ‘plot’
BACprior.CV: no visible global function definition for ‘abline’
BACprior.boot: no visible global function definition for ‘na.fail’
BACprior.boot: no visible global function definition for ‘plot’
BACprior.boot: no visible global function definition for ‘abline’
BACprior.lm: no visible global function definition for ‘na.fail’
BACprior.lm: no visible global function definition for ‘coef’
BACprior.lm: no visible global function definition for ‘vcov’
Undefined global functions or variables:
  abline coef na.fail plot vcov
Consider adding
  importFrom("graphics", "abline", "plot")
  importFrom("stats", "coef", "na.fail", "vcov")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘methods’
  All declared Imports should be used.
'library' or 'require' call to ‘mvtnorm’ which was already attached by Depends.
  Please remove these calls from your code.
bagging: no visible global function definition for ‘predict’
samme: no visible global function definition for ‘predict’
Undefined global functions or variables:
  predict
Consider adding
  importFrom("stats", "predict")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘base’
  All declared Imports should be used.
File ‘BALD/libs/BALD.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘BAMMtools/libs/BAMMtools.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    data   4.6Mb
Namespaces in Imports field not imported from:
  ‘devtools’ ‘docopt’
  All declared Imports should be used.
best_binomial_bandit : f: no visible global function definition for
  ‘dbeta’
best_binomial_bandit : f: no visible global function definition for
  ‘pbeta’
best_binomial_bandit: no visible global function definition for
  ‘integrate’
best_poisson_bandit : f: no visible global function definition for
  ‘dgamma’
best_poisson_bandit : f: no visible global function definition for
  ‘pgamma’
best_poisson_bandit: no visible global function definition for
  ‘integrate’
deseasonalized_trend: no visible global function definition for
  ‘predict’
distribution_estimate: no visible global function definition for
  ‘quantile’
distribution_estimate: no visible global function definition for
  ‘qbeta’
significance_analysis: no visible global function definition for
  ‘prop.test’
sim_post: no visible global function definition for ‘rbeta’
summarize_metrics: no visible global function definition for ‘median’
summarize_metrics: no visible global function definition for
  ‘prop.test’
Undefined global functions or variables:
  dbeta dgamma integrate median pbeta pgamma predict prop.test qbeta
  quantile rbeta
Consider adding
  importFrom("stats", "dbeta", "dgamma", "integrate", "median", "pbeta",
             "pgamma", "predict", "prop.test", "qbeta", "quantile",
             "rbeta")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘zoo’
  All declared Imports should be used.
installed size is 110.6Mb
  sub-directories of 1Mb or more:
    libs  109.8Mb
Namespace in Imports field not imported from: ‘stringr’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘ranger’
  All declared Imports should be used.
extractAffybatch: no visible global function definition for ‘new’
Undefined global functions or variables:
  new
Consider adding
  importFrom("methods", "new")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
'library' or 'require' calls to packages already attached by Depends:
  ‘grid’ ‘lattice’
  Please remove these calls from your code.
Packages in Depends field not imported from:
  ‘grid’ ‘lattice’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
barcode: no visible global function definition for ‘unit’
barcode: no visible global function definition for ‘grid.newpage’
barcode: no visible global function definition for ‘grid.text’
barcode: no visible global function definition for ‘gpar’
barcode: no visible global function definition for ‘pushViewport’
barcode: no visible global function definition for ‘viewport’
barcode: no visible global function definition for ‘convertHeight’
barcode: no visible global function definition for ‘convertWidth’
barcode: no visible global function definition for ‘grid.rect’
barcode: no visible global function definition for ‘popViewport’
barcode.panel: no visible global function definition for ‘unit’
barcode.panel: no visible global function definition for ‘hist’
barcode.panel: no visible global function definition for ‘pushViewport’
barcode.panel: no visible global function definition for ‘viewport’
barcode.panel: no visible global function definition for ‘grid.xaxis’
barcode.panel: no visible global function definition for ‘gpar’
barcode.panel: no visible global function definition for ‘grid.text’
barcode.panel: no visible global function definition for ‘popViewport’
barcode.panel: no visible global function definition for
  ‘grid.segments’
barcode.panel: no visible global function definition for ‘grid.points’
Undefined global functions or variables:
  convertHeight convertWidth gpar grid.newpage grid.points grid.rect
  grid.segments grid.text grid.xaxis hist popViewport pushViewport unit
  viewport
Consider adding
  importFrom("graphics", "hist")
to your NAMESPACE file.
File ‘Barnard/libs/Barnard.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    data   3.1Mb
    doc    1.6Mb
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    data   2.8Mb
    libs   2.6Mb
installed size is 16.3Mb
  sub-directories of 1Mb or more:
    libs  16.1Mb
File ‘base64enc/libs/base64enc.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
File ‘BASIX/libs/BASIX.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘batman/libs/batman.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
BayClone2: no visible global function definition for ‘rbeta’
fn.MCMC.CNV: no visible global function definition for ‘runif’
fn.Tr.CNV: no visible global function definition for ‘quantile’
fn.Tr.CNV: no visible global function definition for ‘rgamma’
Undefined global functions or variables:
  quantile rbeta rgamma runif
Consider adding
  importFrom("stats", "quantile", "rbeta", "rgamma", "runif")
to your NAMESPACE file.
File ‘BayClone2/libs/BayClone2.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following significant warnings:
  rcpparma_hello_world.cpp:930:4: warning: explicitly assigning value of variable of type 'arma::colvec' (aka 'Col<double>') to itself [-Wself-assign-overloaded]
  rcpparma_hello_world.cpp:930:12: warning: explicitly assigning value of variable of type 'arma::colvec' (aka 'Col<double>') to itself [-Wself-assign-overloaded]
  rcpparma_hello_world.cpp:939:4: warning: explicitly assigning value of variable of type 'arma::colvec' (aka 'Col<double>') to itself [-Wself-assign-overloaded]
  rcpparma_hello_world.cpp:939:12: warning: explicitly assigning value of variable of type 'arma::colvec' (aka 'Col<double>') to itself [-Wself-assign-overloaded]
See ‘/data/gannet/ripley/R/packages/tests-clang/BayesBD.Rcheck/00install.out’ for details.
File ‘BayesComm/libs/BayesComm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
FECRT: no visible global function definition for ‘pdf’
FECRT: no visible global function definition for ‘hist’
FECRT: no visible global function definition for ‘abline’
FECRT: no visible global function definition for ‘dev.off’
FECRT.analysis: no visible global function definition for ‘pdf’
FECRT.analysis: no visible global function definition for ‘hist’
FECRT.analysis: no visible global function definition for ‘abline’
FECRT.analysis: no visible global function definition for ‘dev.off’
fecrt: no visible global function definition for ‘pdf’
fecrt: no visible global function definition for ‘hist’
fecrt: no visible global function definition for ‘abline’
fecrt: no visible global function definition for ‘dev.off’
fecrt.analysis: no visible global function definition for ‘pdf’
fecrt.analysis: no visible global function definition for ‘hist’
fecrt.analysis: no visible global function definition for ‘abline’
fecrt.analysis: no visible global function definition for ‘dev.off’
Undefined global functions or variables:
  abline dev.off hist pdf
Consider adding
  importFrom("grDevices", "dev.off", "pdf")
  importFrom("graphics", "abline", "hist")
to your NAMESPACE file.
File ‘bayescount/libs/bayescount.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘bayesDccGarch/libs/bayesDccGarch.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 47.5Mb
  sub-directories of 1Mb or more:
    libs  46.8Mb
Namespace in Imports field not imported from: ‘Rcpp’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘MASS’ ‘MatrixModels’
  All declared Imports should be used.
installed size is 22.8Mb
  sub-directories of 1Mb or more:
    doc    5.4Mb
    libs  16.3Mb
File ‘bayesGARCH/libs/bayesGARCH.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘BayesH/libs/BayesH.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
BMAnimalTrack: no visible global function definition for ‘nlm’
BMAnimalTrack: no visible global function definition for ‘qnorm’
dataSim: no visible global function definition for ‘rnorm’
rBBridge: no visible global function definition for ‘rnorm’
rBMotion: no visible global function definition for ‘rnorm’
Undefined global functions or variables:
  nlm qnorm rnorm
Consider adding
  importFrom("stats", "nlm", "qnorm", "rnorm")
to your NAMESPACE file.
Found the following apparent S3 methods exported but not registered:
  print.Bayesianbetareg print.summary.Bayesianbetareg
  summary.Bayesianbetareg
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
BayesianbetaregEst: no visible global function definition for ‘runif’
BayesianbetaregEst: no visible global function definition for ‘as.ts’
BayesianbetaregEst: no visible global function definition for ‘dev.new’
BayesianbetaregEst: no visible global function definition for ‘ts.plot’
BayesianbetaregEst: no visible binding for global variable ‘sd’
BayesianbetaregEst: no visible global function definition for
  ‘quantile’
betaresiduals : lt: no visible global function definition for ‘dbeta’
diagnostics: no visible global function definition for ‘plot’
diagnostics: no visible global function definition for ‘abline’
diagnostics: no visible global function definition for ‘qqnorm’
diagnostics: no visible global function definition for ‘qqline’
dpostb: no visible global function definition for ‘dbeta’
dpostg: no visible global function definition for ‘dbeta’
plotresiduals: no visible global function definition for ‘plot’
print.summary.Bayesianbetareg: no visible global function definition
  for ‘printCoefmat’
summary.Bayesianbetareg: no visible global function definition for
  ‘coef’
Undefined global functions or variables:
  abline as.ts coef dbeta dev.new plot printCoefmat qqline qqnorm
  quantile runif sd ts.plot
Consider adding
  importFrom("grDevices", "dev.new")
  importFrom("graphics", "abline", "plot")
  importFrom("stats", "as.ts", "coef", "dbeta", "printCoefmat", "qqline",
             "qqnorm", "quantile", "runif", "sd", "ts.plot")
to your NAMESPACE file.
File ‘bayesianETAS/libs/bayesianETAS.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘shinytest’ ‘testthat’
  All declared Imports should be used.
installed size is  6.5Mb
  sub-directories of 1Mb or more:
    data   1.6Mb
    libs   3.8Mb
installed size is  9.6Mb
  sub-directories of 1Mb or more:
    libs   9.5Mb
File ‘bayesloglin/libs/bayesloglin.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    doc    1.3Mb
    libs   4.4Mb
installed size is 31.1Mb
  sub-directories of 1Mb or more:
    doc    3.2Mb
    libs  26.3Mb
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    R     1.8Mb
    doc   4.0Mb
MHratioPopPref: no visible global function definition for ‘runif’
MratioPopMult: no visible global function definition for ‘dunif’
MratioPopMult: no visible global function definition for ‘runif’
bayesPref: no visible global function definition for ‘runif’
calcP: no visible global function definition for ‘dunif’
calcP: no visible global function definition for ‘dmultinom’
calcdic: no visible global function definition for ‘median’
calcdic: no visible binding for global variable ‘median’
calcdic: no visible global function definition for ‘dmultinom’
calcdicExtern: no visible global function definition for ‘median’
calcdicExtern: no visible global function definition for ‘dmultinom’
calcdicExtern: no visible binding for global variable ‘median’
credibleIntervals: no visible global function definition for ‘quantile’
prefPlot: no visible global function definition for ‘postscript’
prefPlot: no visible global function definition for ‘plot’
prefPlot: no visible global function definition for ‘lines’
prefPlot: no visible global function definition for ‘density’
prefPlot: no visible global function definition for ‘median’
prefPlot: no visible global function definition for ‘legend’
prefPlot: no visible global function definition for ‘dev.off’
Undefined global functions or variables:
  density dev.off dmultinom dunif legend lines median plot postscript
  quantile runif
Consider adding
  importFrom("grDevices", "dev.off", "postscript")
  importFrom("graphics", "legend", "lines", "plot")
  importFrom("stats", "density", "dmultinom", "dunif", "median",
             "quantile", "runif")
to your NAMESPACE file.
File ‘bayesQR/libs/bayesQR.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
mlike.alt.g.AR: no visible global function definition for ‘integrate’
mlike.alt.gtheta.AR: no visible global function definition for ‘dbeta’
mlike.null.AR: no visible global function definition for ‘dbeta’
multilevel.Gibbs.AR: no visible global function definition for
  ‘txtProgressBar’
multilevel.Gibbs.AR : pbFun: no visible global function definition for
  ‘setTxtProgressBar’
trendtest.Gibbs.AR: no visible global function definition for
  ‘txtProgressBar’
trendtest.Gibbs.AR : pbFun: no visible global function definition for
  ‘setTxtProgressBar’
trendtest.Gibbs.AR: no visible global function definition for ‘dcauchy’
trendtest.Gibbs.AR: no visible global function definition for ‘pcauchy’
trendtest.MC.AR: no visible global function definition for
  ‘txtProgressBar’
trendtest.MC.AR : pbFun: no visible global function definition for
  ‘setTxtProgressBar’
trendtest.nullMargLikeAR: no visible global function definition for
  ‘integrate’
ttest.Gibbs.AR: no visible global function definition for
  ‘txtProgressBar’
ttest.Gibbs.AR : pbFun: no visible global function definition for
  ‘setTxtProgressBar’
ttest.Gibbs.AR: no visible global function definition for ‘dcauchy’
ttest.Gibbs.AR: no visible global function definition for ‘pcauchy’
ttest.MCGQ.AR: no visible global function definition for ‘integrate’
Undefined global functions or variables:
  dbeta dcauchy integrate pcauchy setTxtProgressBar txtProgressBar
Consider adding
  importFrom("stats", "dbeta", "dcauchy", "integrate", "pcauchy")
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
File ‘BayesSingleSub/libs/BayesSingleSub.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Packages in Depends field not imported from:
  ‘MASS’ ‘combinat’ ‘gplots’ ‘mnormt’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
bayes.regress: no visible binding for global variable ‘var’
bayesregressB1S1: no visible global function definition for ‘rgamma’
bayesregressB1S2: no visible global function definition for ‘rgamma’
bayesregressB2S1: no visible global function definition for ‘rgamma’
bayesregressB2S2: no visible global function definition for ‘rgamma’
bayesregressB3S1: no visible global function definition for ‘rWishart’
bayesregressB3S1: no visible global function definition for ‘rgamma’
bayesregressB3S2: no visible global function definition for ‘rWishart’
bayesregressB3S2: no visible global function definition for ‘rgamma’
Undefined global functions or variables:
  rWishart rgamma var
Consider adding
  importFrom("stats", "rWishart", "rgamma", "var")
to your NAMESPACE file.
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    libs   4.4Mb
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    ex-data   4.7Mb
File ‘BayesTree/libs/BayesTree.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 90.0Mb
  sub-directories of 1Mb or more:
    libs  89.9Mb
Unexported object imported by a ':::' call: ‘boa:::boa.getparms’
  See the note in ?`:::` about the use of this operator.
Rd file 'BayHap-internal.Rd':
  \usage lines wider than 90 characters:
      expectedGenotypes(x, alleles = allele.names(x), ploidy = 2, sort = TRUE, haplotype = FALSE)  

These lines will be truncated in the PDF manual.
File ‘BayHap/libs/BayHap.so’:
  Found ‘rand’, possibly from ‘rand’ (C)
    Object: ‘mcmc.o’
  Found ‘srand’, possibly from ‘srand’ (C)
    Object: ‘mcmc.o’
File ‘BayHap/libs/BayHap.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.
It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Packages in Depends field not imported from:
  ‘fields’ ‘poibin’ ‘rjags’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
BMR.plot: no visible global function definition for ‘heat.colors’
BMR.plot: no visible global function definition for ‘image.plot’
BMR.plot: no visible global function definition for ‘title’
BMR.plot: no visible global function definition for ‘mtext’
BMR.plot: no visible global function definition for ‘par’
baysic.data: no visible global function definition for ‘layout’
baysic.data: no visible global function definition for ‘barplot’
baysic.data: no visible global function definition for ‘rainbow’
baysic.fit: no visible global function definition for ‘jags.model’
baysic.fit: no visible global function definition for ‘update’
baysic.fit: no visible global function definition for ‘coda.samples’
baysic.test: no visible global function definition for ‘ppois’
baysic.test : <anonymous>: no visible global function definition for
  ‘ppoibin’
baysic.test: no visible global function definition for ‘pbinom’
fuzzy.FDR.approx: no visible global function definition for ‘p.adjust’
fuzzy.FDR.approx: no visible global function definition for ‘runif’
Undefined global functions or variables:
  barplot coda.samples heat.colors image.plot jags.model layout mtext
  p.adjust par pbinom ppoibin ppois rainbow runif title update
Consider adding
  importFrom("grDevices", "heat.colors", "rainbow")
  importFrom("graphics", "barplot", "layout", "mtext", "par", "title")
  importFrom("stats", "p.adjust", "pbinom", "ppois", "runif", "update")
to your NAMESPACE file.
Rd file 'baysic.fit.Rd':
  \usage lines wider than 90 characters:
     baysic.fit(dat.out, snv.cat, covar = NULL, excl.list = NULL, burn.in = 10000,n.samp = 25000, fn.jags = "baysic.jags", prior = NULL)
  \examples lines wider than 100 characters:
     snv.cat.ex[[2]]<-unique(c(grep("TC.",colnames(ccds.19)[-c(1:2)]),grep(".CG",colnames(ccds.19)[-c(1:2)])))

Rd file 'baysic.test.Rd':
  \usage lines wider than 90 characters:
     baysic.test(dat.out, fit.out, fdr.level = 0.15, fuzzy.cnt = 10000, r = NULL,subtype = NULL, PB.approx = FALSE)
  \examples lines wider than 100 characters:
     snv.cat.ex[[2]]<-unique(c(grep("TC.",colnames(ccds.19)[-c(1:2)]),grep(".CG",colnames(ccds.19)[-c(1:2)])))

These lines will be truncated in the PDF manual.
Namespaces in Imports field not imported from:
  ‘ggfortify’ ‘ggplot2’ ‘matrixStats’ ‘reshape2’ ‘scales’
  All declared Imports should be used.
BAYSTAR: no visible global function definition for ‘median’
BAYSTAR: no visible global function definition for ‘ar’
BAYSTAR: no visible global function definition for ‘quantile’
BAYSTAR: no visible global function definition for ‘dev.new’
BAYSTAR: no visible global function definition for ‘ts.plot’
BAYSTAR: no visible global function definition for ‘title’
BAYSTAR: no visible global function definition for ‘par’
BAYSTAR: no visible global function definition for ‘plot.ts’
BAYSTAR: no visible global function definition for ‘lines’
BAYSTAR: no visible global function definition for ‘acf’
TAR.lagd: no visible global function definition for ‘runif’
TAR.sigma: no visible global function definition for ‘rgamma’
TAR.simu: no visible global function definition for ‘rnorm’
TAR.summary: no visible global function definition for ‘quantile’
TAR.summary: no visible global function definition for ‘sd’
TAR.thres: no visible global function definition for ‘rnorm’
TAR.thres: no visible global function definition for ‘runif’
Undefined global functions or variables:
  acf ar dev.new lines median par plot.ts quantile rgamma rnorm runif
  sd title ts.plot
Consider adding
  importFrom("grDevices", "dev.new")
  importFrom("graphics", "lines", "par", "title")
  importFrom("stats", "acf", "ar", "median", "plot.ts", "quantile",
             "rgamma", "rnorm", "runif", "sd", "ts.plot")
to your NAMESPACE file.
LaplaceMetropolis_admkr: no visible binding for global variable
  ‘median’
LaplaceMetropolis_admkr: no visible global function definition for
  ‘mad’
LaplaceMetropolis_gaussian: no visible binding for global variable
  ‘median’
LaplaceMetropolis_gaussian: no visible global function definition for
  ‘mad’
cost_admkr: no visible global function definition for ‘sd’
cov_chol: no visible global function definition for ‘qchisq’
cov_chol_admkr: no visible global function definition for ‘qchisq’
gibbs_admkr_erro: no visible global function definition for ‘rnorm’
gibbs_admkr_erro: no visible global function definition for ‘runif’
gibbs_admkr_nw: no visible global function definition for ‘qnorm’
gibbs_admkr_nw: no visible global function definition for ‘rnorm’
gibbs_admkr_nw: no visible global function definition for ‘runif’
loglikelihood_admkr: no visible global function definition for ‘sd’
margin_like_admkr: no visible global function definition for ‘sd’
np_gibbs: no visible global function definition for ‘qnorm’
np_gibbs: no visible global function definition for ‘rnorm’
np_gibbs: no visible global function definition for ‘runif’
np_gibbs: no visible global function definition for ‘rgamma’
Undefined global functions or variables:
  mad median qchisq qnorm rgamma rnorm runif sd
Consider adding
  importFrom("stats", "mad", "median", "qchisq", "qnorm", "rgamma",
             "rnorm", "runif", "sd")
to your NAMESPACE file.
Packages in Depends field not imported from:
  ‘HI’ ‘lme4’ ‘locfit’ ‘secr’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
BBRecap: no visible global function definition for ‘optimize’
BBRecap: no visible global function definition for ‘arms’
BBRecap: no visible global function definition for ‘median’
BBRecap : HPD.interval: no visible global function definition for
  ‘density’
BBRecap : HPD.interval: no visible global function definition for
  ‘quantile’
BBRecap.custom.part: no visible global function definition for
  ‘optimize’
LBRecap: no visible global function definition for ‘findbars’
LBRecap: no visible global function definition for ‘as.formula’
LBRecap: no visible global function definition for ‘glm’
LBRecap: no visible global function definition for ‘binomial’
LBRecap: no visible global function definition for ‘glmer’
LBRecap: no visible global function definition for ‘logLik’
LBRecap: no visible global function definition for ‘coef’
LBRecap: no visible global function definition for ‘na.omit’
LBRecap: no visible global function definition for ‘fixef’
LBRecap: no visible global function definition for ‘ranef’
LBRecap: no visible global function definition for ‘qnorm’
LBRecap: no visible global function definition for ‘plot’
LBRecap: no visible global function definition for ‘points’
LBRecap: no visible global function definition for ‘axis’
LBRecap: no visible global function definition for ‘abline’
LBRecap.custom.part: no visible global function definition for ‘qnorm’
Undefined global functions or variables:
  abline arms as.formula axis binomial coef density findbars fixef glm
  glmer logLik median na.omit optimize plot points qnorm quantile ranef
Consider adding
  importFrom("graphics", "abline", "axis", "plot", "points")
  importFrom("stats", "as.formula", "binomial", "coef", "density", "glm",
             "logLik", "median", "na.omit", "optimize", "qnorm",
             "quantile")
to your NAMESPACE file.
'library' or 'require' call to ‘rgl’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
File ‘BCBCSF/libs/BCBCSF.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
pairs.bce : panel.cor: no visible global function definition for ‘text’
pairs.bce : panel.cor: no visible global function definition for ‘cor’
pairs.bce : panel.hist: no visible global function definition for ‘par’
pairs.bce : panel.hist: no visible global function definition for
  ‘hist’
pairs.bce : panel.hist: no visible global function definition for
  ‘rect’
pairs.bce: no visible global function definition for ‘pairs’
panel.cor: no visible global function definition for ‘par’
panel.cor: no visible global function definition for ‘cor’
panel.cor: no visible global function definition for ‘strwidth’
panel.cor: no visible global function definition for ‘text’
rdirichlet2: no visible global function definition for ‘rgamma’
summary.bce: no visible global function definition for ‘cov’
summary.bce: no visible binding for global variable ‘sd’
summary.bce: no visible binding for global variable ‘quantile’
Undefined global functions or variables:
  cor cov hist pairs par quantile rect rgamma sd strwidth text
Consider adding
  importFrom("graphics", "hist", "pairs", "par", "rect", "strwidth",
             "text")
  importFrom("stats", "cor", "cov", "quantile", "rgamma", "sd")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘ggplot2’
  All declared Imports should be used.
File ‘Bclim/libs/Bclim.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following significant warnings:
  sparseFactor.cpp:33:10: warning: explicitly assigning value of variable of type 'Rcpp::IntegerVector' (aka 'Vector<13>') to itself [-Wself-assign-overloaded]
See ‘/data/gannet/ripley/R/packages/tests-clang/BClustLonG.Rcheck/00install.out’ for details.
File ‘bclust/libs/bclust.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘bcpa/libs/bcpa.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    libs   5.1Mb
plot.cvsvd: no visible binding for global variable ‘sd’
plot.cvsvd: no visible global function definition for ‘plot’
plot.cvsvd: no visible global function definition for ‘lines’
plot.cvsvd: no visible global function definition for ‘segments’
plot.cvsvd: no visible global function definition for ‘points’
print.cvsvd: no visible binding for global variable ‘sd’
summary.cvsvd: no visible binding for global variable ‘sd’
Undefined global functions or variables:
  lines plot points sd segments
Consider adding
  importFrom("graphics", "lines", "plot", "points", "segments")
  importFrom("stats", "sd")
to your NAMESPACE file.
File ‘bcv/libs/bcv.so’:
  Found no call to: ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
mise: no visible global function definition for ‘integrate’
density,BrVitale : density.vitale : <anonymous>: no visible global
  function definition for ‘dbeta’
density,Chen99Kernel : <anonymous>: no visible global function
  definition for ‘dbeta’
density,HirukawaJLNKernel : <anonymous>: no visible global function
  definition for ‘dbeta’
density,MicroBetaChen99Kernel : <anonymous>: no visible global function
  definition for ‘dbeta’
density,Vitale : <anonymous>: no visible global function definition for
  ‘dbeta’
distribution,BernsteinPolynomials : <anonymous>: no visible global
  function definition for ‘integrate’
distribution,KernelDensity : <anonymous>: no visible global function
  definition for ‘integrate’
print,BoundedDensity: no visible global function definition for ‘str’
print,KernelDensity: no visible global function definition for ‘str’
rsample,BoundedDensity: no visible global function definition for
  ‘runif’
setNormalizationConst,MacroBetaChen99Kernel: no visible global function
  definition for ‘integrate’
setNormalizationConst,MacroBetaHirukawaTSKernel: no visible global
  function definition for ‘integrate’
setNormalizationConstant,MacroBetaHirukawaJLNKernel: no visible global
  function definition for ‘integrate’
setNormalizationConstants,MicroBetaChen99Kernel :
  density.kernelFunction: no visible global function definition for
  ‘dbeta’
setNormalizationConstants,MicroBetaChen99Kernel : <anonymous>: no
  visible global function definition for ‘integrate’
show,BoundedDensity: no visible global function definition for ‘str’
show,KernelDensity: no visible global function definition for ‘str’
Undefined global functions or variables:
  dbeta integrate runif str
Consider adding
  importFrom("stats", "dbeta", "integrate", "runif")
  importFrom("utils", "str")
to your NAMESPACE file.
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    doc    2.4Mb
    libs   3.5Mb
Namespace in Imports field not imported from: ‘readxl’
  All declared Imports should be used.
Packages in Depends field not imported from:
  ‘RColorBrewer’ ‘beadarray’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
beadtypeFilter: no visible global function definition for ‘na.omit’
beadtypeFilter: no visible global function definition for ‘exprs’
beadtypeFilter: no visible global function definition for ‘se.exprs’
beadtypeFilter: no visible global function definition for ‘beadNum’
beadtypeFilter: no visible global function definition for ‘fData’
emCDF: no visible global function definition for ‘brewer.pal’
emCDF: no visible global function definition for ‘plot’
emCDF: no visible global function definition for ‘ecdf’
emCDF: no visible global function definition for ‘legend’
emCDF: no visible global function definition for ‘lines’
emCDF: no visible global function definition for ‘text’
emCDF: no visible global function definition for ‘reshape’
iccFun : <anonymous>: no visible global function definition for
  ‘quantile’
varianceplot: no visible global function definition for ‘reshape’
varianceplot: no visible global function definition for ‘plot’
varianceplot: no visible global function definition for ‘points’
varianceplot: no visible global function definition for ‘legend’
Undefined global functions or variables:
  beadNum brewer.pal ecdf exprs fData legend lines na.omit plot points
  quantile reshape se.exprs text
Consider adding
  importFrom("graphics", "legend", "lines", "plot", "points", "text")
  importFrom("stats", "ecdf", "na.omit", "quantile", "reshape")
to your NAMESPACE file.
Rd file 'iccFun.Rd':
  \examples lines wider than 100 characters:
     aaa<-na.omit(data.frame(I(rownames(exprs(exampleSummaryDataNorm))),exprs(exampleSummaryDataNorm)))[1:40,]

These lines will be truncated in the PDF manual.
installed size is  8.2Mb
  sub-directories of 1Mb or more:
    data   6.6Mb
installed size is 108.8Mb
  sub-directories of 1Mb or more:
    libs  107.4Mb
Namespace in Imports field not imported from: ‘rstantools’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘Rcpp’ ‘chron’ ‘colorspace’ ‘gtable’ ‘htmltools’ ‘htmlwidgets’
  ‘httpuv’ ‘magrittr’ ‘munsell’ ‘plyr’ ‘scales’ ‘stringi’ ‘xtable’
  ‘yaml’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘crochet’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘magrittr’
  All declared Imports should be used.
File ‘BenfordTests/libs/BenfordTests.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
beqi2: no visible global function definition for ‘na.omit’
beqi2: no visible global function definition for ‘browseURL’
readAMBI: no visible global function definition for ‘read.csv’
readBEQI: no visible global function definition for ‘read.csv’
readERF: no visible global function definition for ‘read.csv’
readTWN: no visible global function definition for ‘read.csv’
read_ITI_FIBI: no visible global function definition for ‘read.csv’
Undefined global functions or variables:
  browseURL na.omit read.csv
Consider adding
  importFrom("stats", "na.omit")
  importFrom("utils", "browseURL", "read.csv")
to your NAMESPACE file.
'library' or 'require' call to ‘MASS’ which was already attached by Depends.
  Please remove these calls from your code.
ber: no visible global function definition for ‘model.matrix’
ber: no visible global function definition for ‘as.formula’
ber_bg: no visible global function definition for ‘model.matrix’
ber_bg: no visible global function definition for ‘as.formula’
combat_np: no visible global function definition for ‘as.formula’
combat_np: no visible global function definition for ‘model.matrix’
combat_p: no visible global function definition for ‘as.formula’
combat_p: no visible global function definition for ‘model.matrix’
combat_p: no visible binding for global variable ‘var’
combat_p: no visible global function definition for ‘par’
combat_p: no visible global function definition for ‘density’
combat_p: no visible global function definition for ‘plot’
combat_p: no visible global function definition for ‘lines’
combat_p: no visible global function definition for ‘dnorm’
combat_p: no visible global function definition for ‘qqnorm’
combat_p: no visible global function definition for ‘qqline’
combat_p: no visible global function definition for ‘rgamma’
combat_p: no visible global function definition for ‘qqplot’
combat_p: no visible global function definition for ‘title’
mean_centering: no visible global function definition for
  ‘model.matrix’
standardization: no visible global function definition for
  ‘model.matrix’
Undefined global functions or variables:
  as.formula density dnorm lines model.matrix par plot qqline qqnorm
  qqplot rgamma title var
Consider adding
  importFrom("graphics", "lines", "par", "plot", "title")
  importFrom("stats", "as.formula", "density", "dnorm", "model.matrix",
             "qqline", "qqnorm", "qqplot", "rgamma", "var")
to your NAMESPACE file.
Package in Depends field not imported from: ‘Rmpfr’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
bI: no visible global function definition for ‘is’
bI: no visible global function definition for ‘mpfr’
bI: no visible binding for global variable ‘slot’
bI: no visible global function definition for ‘as’
Undefined global functions or variables:
  as is mpfr slot
Consider adding
  importFrom("methods", "as", "is", "slot")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
File ‘Bessel/libs/Bessel.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 30.9Mb
  sub-directories of 1Mb or more:
    libs  29.9Mb
'library' or 'require' call to ‘vegan’ which was already attached by Depends.
  Please remove these calls from your code.
Found the following apparent S3 methods exported but not registered:
  cca.pertables plot.adonis.pertables plot.cca.pertables
  plot.mantel.pertables plot.rda.pertables print.adonis.pertables
  print.cca.pertables print.mantel.pertables print.pertables
  print.rda.pertables rda.pertables
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
S3 methods shown with full name in documentation object 'cca.pertables':
  ‘cca.pertables’

S3 methods shown with full name in documentation object 'rda.pertables':
  ‘rda.pertables’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
betas.lm: no visible binding for global variable ‘sd’
betas.lm: no visible global function definition for ‘sd’
my.wtd.var: no visible global function definition for ‘var’
Undefined global functions or variables:
  sd var
Consider adding
  importFrom("stats", "sd", "var")
to your NAMESPACE file.
File ‘betategarch/libs/betategarch.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    libs   4.8Mb
File ‘bfa/libs/bfa.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 144.8Mb
  sub-directories of 1Mb or more:
    include  144.7Mb
Package in Depends field not imported from: ‘betareg’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
bias: no visible global function definition for ‘predict’
bias: no visible global function definition for ‘pnorm’
bias: no visible global function definition for ‘model.matrix’
Undefined global functions or variables:
  model.matrix pnorm predict
Consider adding
  importFrom("stats", "model.matrix", "pnorm", "predict")
to your NAMESPACE file.
File ‘BiasedUrn/libs/BiasedUrn.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    data   2.1Mb
    libs   3.2Mb
installed size is  8.1Mb
  sub-directories of 1Mb or more:
    data   1.4Mb
    libs   6.2Mb
anon_matrix: no visible global function definition for
  ‘filebacked.big.matrix’
anon_matrix: no visible global function definition for ‘capture.output’
finalize_anon_matrix: no visible global function definition for
  ‘capture.output’
Undefined global functions or variables:
  capture.output filebacked.big.matrix
Consider adding
  importFrom("utils", "capture.output")
to your NAMESPACE file.
File ‘bigalgebra/libs/bigalgebra.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘biganalytics/libs/biganalytics.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘knitr’ ‘rmarkdown’
  All declared Imports should be used.
File ‘bigGP/libs/bigGP.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    libs   4.7Mb
File ‘biglars/libs/biglars.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  8.9Mb
  sub-directories of 1Mb or more:
    libs   8.1Mb
Packages in Depends field not imported from:
  ‘DBI’ ‘methods’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Call with DUP:
   .Fortran("regcf", as.integer(p), as.integer(p * p/2), bigQR$D, 
       bigQR$rbar, bigQR$thetab, bigQR$tol, beta = numeric(p), nreq = as.integer(nvar), 
       ier = integer(1), DUP = FALSE)
DUP is no longer supported and will be ignored.
bigglm.RODBC: no visible global function definition for ‘odbcQuery’
bigglm.RODBC : chunk: no visible global function definition for
  ‘odbcQuery’
bigglm.RODBC : chunk: no visible global function definition for
  ‘sqlGetResults’
bigglm,ANY-DBIConnection: no visible global function definition for
  ‘dbSendQuery’
bigglm,ANY-DBIConnection: no visible global function definition for
  ‘dbClearResult’
bigglm,ANY-DBIConnection : chunk: no visible global function definition
  for ‘dbClearResult’
bigglm,ANY-DBIConnection : chunk: no visible global function definition
  for ‘dbSendQuery’
bigglm,ANY-DBIConnection : chunk: no visible global function definition
  for ‘fetch’
Undefined global functions or variables:
  dbClearResult dbSendQuery fetch odbcQuery sqlGetResults

Found the following calls to data() loading into the global environment:
File ‘biglm/R/bigglm.R’:
  data(reset = TRUE)
  data(reset = FALSE)
See section ‘Good practice’ in ‘?data’.
File ‘biglm/libs/biglm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    libs   6.1Mb
quickModel: no visible global function definition for ‘tail’
quickSource: no visible global function definition for ‘write.table’
Undefined global functions or variables:
  tail write.table
Consider adding
  importFrom("utils", "tail", "write.table")
to your NAMESPACE file.
src/Makevars: SHLIB_OPENMP_CXXFLAGS is included in PKG_CXXFLAGS but not in PKG_LIBS
  src/Makevars: SHLIB_OPENMP_CFLAGS is included in PKG_LIBS but linking is by C++
  src/Makevars: it is not portable to include SHLIB_OPENMP_*' macros in PKG_CPPFLAGS
Use of these macros is discussed in sect 1.2.1.1 of ‘Writing R
Extensions’. The macros for different languages may differ so the
matching macro must be used in PKG_CXXFLAGS (etc) and match that used
in PKG_LIBS (except for Fortran: see the manual).
PKG_CPPFLAGS is used for both C and C++ code so it is not portable to
use it for these macros.
File ‘bigReg/libs/bigReg.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 10.4Mb
  sub-directories of 1Mb or more:
    extdata   2.3Mb
    libs      7.6Mb
File ‘bigtabulate/libs/bigtabulate.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘MASS’ ‘lattice’ ‘zoo’
  All declared Imports should be used.
Packages in Depends field not imported from:
  ‘gbm’ ‘glmnet’ ‘randomForest’ ‘tree’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
LDCAEst: no visible global function definition for ‘glmnet’
cv.LDCA: no visible global function definition for ‘cv.glmnet’
predict.LDCA: no visible global function definition for ‘predict’
predict.cv.LDCA: no visible global function definition for ‘predict’
predict.tsp.gbm: no visible global function definition for ‘predict’
predict.tsp.randomForest: no visible global function definition for
  ‘predict’
predict.tsp.tree: no visible global function definition for ‘predict’
tsp.gbm: no visible global function definition for ‘gbm.fit’
tsp.randomForest: no visible global function definition for
  ‘randomForest’
tsp.tree: no visible global function definition for ‘tree.control’
tsp.tree: no visible global function definition for ‘tree’
Undefined global functions or variables:
  cv.glmnet gbm.fit glmnet predict randomForest tree tree.control
Consider adding
  importFrom("stats", "predict")
to your NAMESPACE file.
Rd file 'predict.LDCA.Rd':
  \usage lines wider than 90 characters:
     predict(object, newx, s = NULL, type = c("link", "response", "coefficients", "nonzero", "class"), exact = FALSE, offset, ...)

Rd file 'predict.tsp.randomForest.Rd':
  \usage lines wider than 90 characters:
     predict(object, newdata, type = "response", norm.votes = TRUE, predict.all = FALSE, proximity = FALSE, nodes = FALSE, cutoff, ...)

Rd file 'predict.tsp.tree.Rd':
  \usage lines wider than 90 characters:
     predict(object, newdata, type = c("vector", "tree", "class", "where"), split = FALSE, nwts, eps = 0.001, ...)

Rd file 'tsp.gbm.Rd':
  \usage lines wider than 90 characters:
     tsp.gbm(x, y, offset = NULL, misc = NULL, distribution = "bernoulli", w = NULL, var.monotone = NULL, n.trees = 100, interaction.depth = ... [TRUNCATED]

Rd file 'tsp.randomForest.Rd':
  \usage lines wider than 90 characters:
     tsp.randomForest(x, y = NULL, xtest = NULL, ytest = NULL, ntree = 500, type = "classification", mtry = if (!is.null(y) && !is.factor(y) ... [TRUNCATED]

Rd file 'tsp.tree.Rd':
  \usage lines wider than 90 characters:
     tsp.tree(X, response, control = tree.control(dim(X)[1], ...), method = "recursive.partition", split = c("deviance", "gini"), x = FALSE, ... [TRUNCATED]

These lines will be truncated in the PDF manual.
installed size is 17.1Mb
  sub-directories of 1Mb or more:
    libs  16.6Mb
installed size is 11.7Mb
  sub-directories of 1Mb or more:
    doc    1.9Mb
    libs   9.0Mb
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data   5.3Mb
plot,bild-missing: no visible global function definition for
  ‘dev.interactive’
plot,bild-missing: no visible global function definition for
  ‘devAskNewPage’
plot,bild-missing: no visible global function definition for
  ‘extendrange’
Undefined global functions or variables:
  dev.interactive devAskNewPage extendrange
Consider adding
  importFrom("grDevices", "dev.interactive", "devAskNewPage",
             "extendrange")
to your NAMESPACE file.
File ‘bild/libs/bild.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘Binarize/libs/Binarize.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
commonprob2sigma: no visible global function definition for ‘approxfun’
rmvbin: no visible global function definition for ‘qnorm’
simul.commonprob: no visible global function definition for ‘qnorm’
Undefined global functions or variables:
  approxfun qnorm
Consider adding
  importFrom("stats", "approxfun", "qnorm")
to your NAMESPACE file.
'library' or 'require' calls in package code:
  ‘ggplot2’ ‘lattice’ ‘polynom’ ‘tcltk’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
File ‘binom/libs/binom.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    libs   2.5Mb
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    libs   4.5Mb
Package suggested but not available for checking: ‘BiocVersion’
'library' or 'require' calls to packages already attached by Depends:
  ‘ape’ ‘cladoRcpp’ ‘phylobase’ ‘rexpokit’
  Please remove these calls from your code.
Packages in Depends field not imported from:
  ‘ape’ ‘cladoRcpp’ ‘methods’ ‘phylobase’ ‘rexpokit’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
':::' calls which should be '::':
  ‘ape:::floating.pie.asp’ ‘cladoRcpp:::areas_list_to_states_list_old’
  See the note in ?`:::` about the use of this operator.
installed size is 11.7Mb
  sub-directories of 1Mb or more:
    doc       2.5Mb
    extdata   8.7Mb
Missing or unexported object: ‘gam::step.gam’
File ‘bioPN/libs/bioPN.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    data      1.6Mb
    extdata   2.6Mb
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    doc   4.9Mb
binom.ci : bc: no visible global function definition for ‘qf’
binom.ci : bc: no visible global function definition for ‘qnorm’
cvar: no visible global function definition for ‘sd’
eta2: no visible global function definition for ‘lm’
eta2: no visible global function definition for ‘as.formula’
gg_qqplot: no visible binding for global variable ‘qnorm’
gg_qqplot: no visible global function definition for ‘quantile’
panel.hist: no visible global function definition for ‘par’
panel.hist: no visible global function definition for ‘hist’
panel.hist: no visible global function definition for ‘rect’
plotcdf2: no visible global function definition for ‘colorRampPalette’
plotcdf2 : jet.colors: no visible global function definition for ‘gray’
plotcdf2: no visible global function definition for ‘persp’
poi.ci: no visible global function definition for ‘qchisq’
Undefined global functions or variables:
  as.formula colorRampPalette gray hist lm par persp qchisq qf qnorm
  quantile rect sd
Consider adding
  importFrom("grDevices", "colorRampPalette", "gray")
  importFrom("graphics", "hist", "par", "persp", "rect")
  importFrom("stats", "as.formula", "lm", "qchisq", "qf", "qnorm",
             "quantile", "sd")
to your NAMESPACE file.
File ‘bitops/libs/bitops.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘bit/libs/bit.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘BiTrinA/libs/BiTrinA.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘bitrugs/libs/bitrugs.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘corrgram’ ‘rpivotTable’ ‘shinyAce’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘Rcpp’ ‘knitr’ ‘rmarkdown’
  All declared Imports should be used.
biwt.cor: no visible global function definition for ‘covMcd’
biwt.cor: no visible binding for global variable ‘mad’
biwt.est: no visible global function definition for ‘covMcd’
biwt.est: no visible global function definition for ‘mahalanobis’
chi.int: no visible global function definition for ‘pchisq’
chi.int.p: no visible global function definition for ‘dchisq’
chi.int2: no visible global function definition for ‘pchisq’
chi.int2.p: no visible global function definition for ‘dchisq’
rejpt.bw: no visible global function definition for ‘pchisq’
Undefined global functions or variables:
  covMcd dchisq mad mahalanobis pchisq
Consider adding
  importFrom("stats", "dchisq", "mad", "mahalanobis", "pchisq")
to your NAMESPACE file.
Package suggested but not available for checking: ‘RQuantLib’
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    libs   6.5Mb
Namespaces in Imports field not imported from:
  ‘R6’ ‘knitr’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘RGtk2’ ‘cairoDevice’ ‘ergm’ ‘foreign’ ‘gWidgets’ ‘gWidgetsRGtk2’
  ‘haven’ ‘plot3D’ ‘plot3Drgl’ ‘rgl’ ‘sna’ ‘statnet.common’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘glmnet’ ‘gtools’ ‘knitr’ ‘nnet’ ‘parallel’ ‘rJava’ ‘reshape’
  ‘rmarkdown’ ‘shinyjs’
  All declared Imports should be used.
Missing or unexported object: ‘xgboost::predict’
bglmer: no visible global function definition for ‘packageVersion’
getBglmerDevianceFunctionBody: no visible global function definition
  for ‘packageVersion’
getParInfo : <anonymous>: no visible global function definition for
  ‘sd’
makeRefitDevFun: no visible global function definition for
  ‘packageVersion’
mkBglmerDevfun: no visible global function definition for
  ‘packageVersion’
namedList: no visible global function definition for ‘setNames’
refit.bmerMod: no visible global function definition for
  ‘packageVersion’
refit.bmerMod: no visible global function definition for ‘model.frame’
refit.bmerMod: no visible global function definition for ‘family’
refit.bmerMod: no visible global function definition for ‘getCall’
Undefined global functions or variables:
  family getCall model.frame packageVersion sd setNames
Consider adding
  importFrom("stats", "family", "getCall", "model.frame", "sd",
             "setNames")
  importFrom("utils", "packageVersion")
to your NAMESPACE file.
installed size is 54.7Mb
  sub-directories of 1Mb or more:
    libs  53.4Mb
installed size is 12.6Mb
  sub-directories of 1Mb or more:
    libs  12.2Mb
blockmodelskmeans: no visible global function definition for ‘dist’
matrixplot: no visible global function definition for ‘image’
matrixplot: no visible global function definition for ‘hsv’
matrixplot: no visible global function definition for ‘axis’
Undefined global functions or variables:
  axis dist hsv image
Consider adding
  importFrom("grDevices", "hsv")
  importFrom("graphics", "axis", "image")
  importFrom("stats", "dist")
to your NAMESPACE file.
File ‘blockmodels/libs/blockmodels.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘shiny’
  All declared Imports should be used.
File ‘blockTools/libs/blockTools.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Package in Depends field not imported from: ‘drc’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
bmd: no visible global function definition for ‘qnorm’
bmd: no visible global function definition for ‘predict’
bmd: no visible global function definition for ‘LL.2’
bmd: no visible global function definition for ‘LN.2’
bmd: no visible global function definition for ‘W1.2’
bmd: no visible global function definition for ‘W2.2’
bmd: no visible global function definition for ‘LL.5’
bmd: no visible global function definition for ‘LN.4’
bmd: no visible global function definition for ‘W1.4’
bmd: no visible global function definition for ‘W2.4’
bmd: no visible global function definition for ‘FPL.4’
bmd: no visible global function definition for ‘maED’
bmd: no visible global function definition for ‘ED’
Undefined global functions or variables:
  ED FPL.4 LL.2 LL.5 LN.2 LN.4 W1.2 W1.4 W2.2 W2.4 maED predict qnorm
Consider adding
  importFrom("stats", "predict", "qnorm")
to your NAMESPACE file.
Rd file 'bmd.Rd':
  \examples lines wider than 100 characters:
     efsa2009p41.LL2 <- drm(number/total~dose, weights=total, data=efsa2009p41, type="binomial", fct=LL.2())
     efsa2009p41.LL3u <- drm(number/total~dose, weights=total, data=efsa2009p41, type="binomial", fct=LL.3u())
     hwang2009 <- data.frame(dose = c(0, 2.68, 10.34, 37.03), number = c(1,0,2,9), total = c(50,50,50,50))
     hwang2009.LN2 <- drm(number/total ~ dose, weights = total, data = hwang2009, type = "binomial", fct = LN.2())

These lines will be truncated in the PDF manual.
Packages in Depends field not imported from:
  ‘Amelia’ ‘MASS’ ‘lavaan’ ‘sem’ ‘snowfall’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Namespaces in Imports field not imported from:
  ‘formula.tools’ ‘plm’
  All declared Imports should be used.
File ‘Bmix/libs/Bmix.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'library' or 'require' calls to packages already attached by Depends:
  ‘coda’ ‘functional’ ‘plyr’
  Please remove these calls from your code.
Packages in Depends field not imported from:
  ‘coda’ ‘functional’ ‘plyr’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
HDistNoSize: no visible global function definition for ‘density’
HDistSize: no visible global function definition for ‘density’
bmkconverge: no visible global function definition for ‘Compose’
bmksensitive: no visible global function definition for ‘Compose’
bmksummary: no visible global function definition for ‘Compose’
bmksummary: no visible global function definition for ‘Curry’
bmksummary: no visible binding for global variable ‘quantile’
bmksummary : std.error: no visible global function definition for ‘var’
bmksummary: no visible global function definition for ‘mcmc’
bmksummary: no visible global function definition for ‘mcmc.list’
bmksummary: no visible global function definition for ‘median’
bmksummary: no visible global function definition for ‘effectiveSize’
bmksummary: no visible global function definition for ‘gelman.diag’
Undefined global functions or variables:
  Compose Curry density effectiveSize gelman.diag mcmc mcmc.list median
  quantile var
Consider adding
  importFrom("stats", "density", "median", "quantile", "var")
to your NAMESPACE file.
installed size is 35.1Mb
  sub-directories of 1Mb or more:
    libs  34.8Mb
bmmix : LL.y: no visible global function definition for ‘dmultinom’
bmmix : LL.x : <anonymous>: no visible global function definition for
  ‘dmultinom’
bmmix : LPrior.alpha: no visible global function definition for ‘dexp’
bmmix : alpha.move: no visible global function definition for ‘rnorm’
bmmix : alpha.move: no visible global function definition for ‘runif’
bmmix : phi.move: no visible global function definition for ‘rnorm’
bmmix : phi.move: no visible global function definition for ‘runif’
bmmix: no visible global function definition for ‘read.table’
Undefined global functions or variables:
  dexp dmultinom read.table rnorm runif
Consider adding
  importFrom("stats", "dexp", "dmultinom", "rnorm", "runif")
  importFrom("utils", "read.table")
to your NAMESPACE file.
File ‘BMRV/libs/BMRV.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 70.0Mb
  sub-directories of 1Mb or more:
    libs  69.7Mb
installed size is  7.7Mb
  sub-directories of 1Mb or more:
    libs   6.8Mb
bnlr: no visible global function definition for ‘dnorm’
bnlr: no visible global function definition for ‘runif’
chainsum : <anonymous>: no visible global function definition for
  ‘quantile’
infocrit: no visible global function definition for ‘dnorm’
Undefined global functions or variables:
  dnorm quantile runif
Consider adding
  importFrom("stats", "dnorm", "quantile", "runif")
to your NAMESPACE file.
clusterplots: no visible global function definition for ‘par’
clusterplots: no visible global function definition for ‘rainbow’
clusterplots: no visible global function definition for ‘plot’
clusterplots: no visible global function definition for ‘axis’
clusterplots: no visible global function definition for ‘lines’
diagplots: no visible global function definition for ‘par’
diagplots: no visible global function definition for ‘plot’
diagplots: no visible global function definition for ‘hist’
tseriesca: no visible global function definition for ‘rgamma’
tseriesca: no visible global function definition for ‘runif’
tseriesca: no visible global function definition for ‘dbeta’
tseriesca: no visible global function definition for ‘dgamma’
tseriescm: no visible global function definition for ‘rgamma’
tseriescm: no visible global function definition for ‘runif’
tseriescm: no visible global function definition for ‘dbeta’
tseriescm: no visible global function definition for ‘dgamma’
tseriescq: no visible global function definition for ‘rgamma’
tseriescq: no visible global function definition for ‘runif’
tseriescq: no visible global function definition for ‘dbeta’
tseriescq: no visible global function definition for ‘dgamma’
Undefined global functions or variables:
  axis dbeta dgamma hist lines par plot rainbow rgamma runif
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "axis", "hist", "lines", "par", "plot")
  importFrom("stats", "dbeta", "dgamma", "rgamma", "runif")
to your NAMESPACE file.
installed size is  8.9Mb
  sub-directories of 1Mb or more:
    data   8.7Mb
BOGest: no visible global function definition for ‘read.table’
BOGstat: no visible global function definition for ‘phyper’
BOGstat: no visible global function definition for ‘wilcox.test’
BOGstat: no visible global function definition for ‘p.adjust’
gseaplot: no visible global function definition for ‘par’
gseaplot: no visible global function definition for ‘plot’
gseaplot: no visible global function definition for ‘points’
gseaplot: no visible global function definition for ‘axis’
gseaplot: no visible global function definition for ‘segments’
hgplot: no visible global function definition for ‘par’
hgplot: no visible global function definition for ‘barplot’
Undefined global functions or variables:
  axis barplot p.adjust par phyper plot points read.table segments
  wilcox.test
Consider adding
  importFrom("graphics", "axis", "barplot", "par", "plot", "points",
             "segments")
  importFrom("stats", "p.adjust", "phyper", "wilcox.test")
  importFrom("utils", "read.table")
to your NAMESPACE file.
src/Makevars.win: SHLIB_OPENMP_CXXFLAGS is included in PKG_CXXFLAGS but not in PKG_LIBS
  src/Makevars.win: SHLIB_OPENMP_CFLAGS is included in PKG_LIBS but linking is by C++
Use of these macros is discussed in sect 1.2.1.1 of ‘Writing R
Extensions’. The macros for different languages may differ so the
matching macro must be used in PKG_CXXFLAGS (etc) and match that used
in PKG_LIBS (except for Fortran: see the manual).
installed size is 356.8Mb
  sub-directories of 1Mb or more:
    include    3.2Mb
    lib      353.3Mb
installed size is 88.5Mb
  sub-directories of 1Mb or more:
    libs  88.1Mb
boostBackend: no visible global function definition for ‘model.frame’
findFormulaIn: no visible global function definition for ‘as.formula’
kFoldCV: no visible binding for global variable ‘par’
predictResponseFromWeightedAverage: no visible global function
  definition for ‘weighted.mean’
print.boostr: no visible global function definition for ‘str’
Undefined global functions or variables:
  as.formula model.frame par str weighted.mean
Consider adding
  importFrom("graphics", "par")
  importFrom("stats", "as.formula", "model.frame", "weighted.mean")
  importFrom("utils", "str")
to your NAMESPACE file.
'library' or 'require' call to ‘lpSolveAPI’ which was already attached by Depends.
  Please remove these calls from your code.
Packages in Depends field not imported from:
  ‘genetics’ ‘lpSolveAPI’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
alleleEnrichment: no visible binding for global variable ‘na.omit’
alleleEnrichment: no visible binding for global variable ‘na.pass’
alleleEnrichment: no visible global function definition for
  ‘write.table’
alleleEnrichment.data.alleles: no visible binding for global variable
  ‘na.omit’
alleleEnrichment.data.alleles: no visible binding for global variable
  ‘na.pass’
alleleEnrichment.data.alleles : <anonymous>: no visible global function
  definition for ‘allele.count’
alleleEnrichment.data.alleles: no visible global function definition
  for ‘runif’
alleleEnrichment.data.pheno: no visible global function definition for
  ‘read.table’
alleleEnrichment.lp: no visible global function definition for
  ‘make.lp’
alleleEnrichment.lp : <anonymous>: no visible global function
  definition for ‘set.column’
alleleEnrichment.lp : <anonymous>: no visible global function
  definition for ‘set.type’
alleleEnrichment.lp: no visible global function definition for
  ‘set.objfn’
alleleEnrichment.lp: no visible global function definition for
  ‘set.constr.type’
alleleEnrichment.lp: no visible global function definition for
  ‘set.rhs’
alleleEnrichment.lp: no visible global function definition for
  ‘lp.control’
alleleEnrichment.lp: no visible global function definition for
  ‘get.variables’
getGenotypes : <anonymous>: no visible global function definition for
  ‘genotype’
getRefAlleles: no visible global function definition for ‘read.table’
getSnpWeights: no visible global function definition for ‘read.table’
readMapfile: no visible global function definition for ‘read.table’
Undefined global functions or variables:
  allele.count genotype get.variables lp.control make.lp na.omit
  na.pass read.table runif set.column set.constr.type set.objfn set.rhs
  set.type write.table
Consider adding
  importFrom("stats", "na.omit", "na.pass", "runif")
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘psych’
  All declared Imports should be used.
File ‘bootruin/libs/bootruin.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
specdens: no visible global function definition for ‘quantile’
Undefined global functions or variables:
  quantile
Consider adding
  importFrom("stats", "quantile")
to your NAMESPACE file.
Rd file 'specdens.Rd':
  \examples lines wider than 100 characters:
                                                                                         #the first 20 values of the 
                                                                                         #time series Nile and WWWusage

These lines will be truncated in the PDF manual.
boot.stepAIC: no visible global function definition for ‘update’
boot.stepAIC: no visible binding for global variable ‘coef’
boot.stepAIC : <anonymous>: no visible global function definition for
  ‘anova’
boot.stepAIC: no visible global function definition for ‘pnorm’
Undefined global functions or variables:
  anova coef pnorm update
Consider adding
  importFrom("stats", "anova", "coef", "pnorm", "update")
to your NAMESPACE file.
File ‘bootstrap/libs/bootstrap.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
bootSVD: no visible global function definition for ‘object.size’
bootSVD : <anonymous> : <anonymous>: no visible global function
  definition for ‘quantile’
bootSVD_LD: no visible global function definition for ‘txtProgressBar’
bootSVD_LD: no visible global function definition for
  ‘setTxtProgressBar’
genQ: no visible global function definition for ‘rnorm’
getHDpercentiles : <anonymous>: no visible global function definition
  for ‘quantile’
getMomentsAndMomentCI: no visible binding for global variable ‘var’
os: no visible global function definition for ‘object.size’
simEEG: no visible global function definition for ‘rnorm’
Undefined global functions or variables:
  object.size quantile rnorm setTxtProgressBar txtProgressBar var
Consider adding
  importFrom("stats", "quantile", "rnorm", "var")
  importFrom("utils", "object.size", "setTxtProgressBar",
             "txtProgressBar")
to your NAMESPACE file.
boottol: no visible global function definition for ‘setNames’
boottol : shift: no visible global function definition for ‘tail’
boottol : shift: no visible global function definition for ‘head’
boottol: no visible global function definition for ‘na.omit’
vastol: no visible global function definition for ‘setNames’
vastol: no visible global function definition for ‘na.omit’
Undefined global functions or variables:
  head na.omit setNames tail
Consider adding
  importFrom("stats", "na.omit", "setNames")
  importFrom("utils", "head", "tail")
to your NAMESPACE file.
Namespaces in Imports field not imported from:
  ‘rgdal’ ‘tidyr’
  All declared Imports should be used.
M0: no visible global function definition for ‘fft’
M1: no visible global function definition for ‘fft’
bpk: no visible binding for global variable ‘dnorm’
bpkde: no visible binding for global variable ‘dnorm’
bpkde: no visible binding for global variable ‘bw.SJ’
bpkde: no visible global function definition for ‘rnorm’
bpkde: no visible global function definition for ‘fft’
bpkde: no visible global function definition for ‘optimize’
contour.discretize.kernel: no visible global function definition for
  ‘contour.default’
contour.mvkde: no visible global function definition for
  ‘contour.default’
image.discretize.kernel: no visible global function definition for
  ‘image.default’
image.discretize.kernel: no visible global function definition for
  ‘gray’
image.mvkde: no visible global function definition for ‘image.default’
image.mvkde: no visible global function definition for ‘gray’
image.mvlinbin: no visible global function definition for ‘image’
image.mvlinbin: no visible global function definition for ‘gray’
plot.discretize.kernel: no visible global function definition for
  ‘mtext’
plot.discretize.kernel: no visible global function definition for ‘par’
plot.mvkde: no visible global function definition for ‘mtext’
plot.mvkde: no visible global function definition for ‘par’
plot.mvlinbin: no visible global function definition for ‘plot’
plot.mvlinbin: no visible global function definition for ‘mtext’
plot.mvlinbin: no visible global function definition for ‘par’
Undefined global functions or variables:
  bw.SJ contour.default dnorm fft gray image image.default mtext
  optimize par plot rnorm
Consider adding
  importFrom("grDevices", "gray")
  importFrom("graphics", "contour.default", "image", "image.default",
             "mtext", "par", "plot")
  importFrom("stats", "bw.SJ", "dnorm", "fft", "optimize", "rnorm")
to your NAMESPACE file.
File ‘bpkde/libs/bpkde.so’:
  Found no call to: ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘bqtl/libs/bqtl.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    libs   5.5Mb
Namespaces in Imports field not imported from:
  ‘CCA’ ‘brainR’ ‘elasticnet’
  All declared Imports should be used.
Package in Depends field not imported from: ‘waveslim’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
NB: .First.lib is obsolete and will not be used in R >= 3.0.0

const.cor.list: no visible global function definition for
  ‘wave.correlation’
const.var.list: no visible global function definition for
  ‘wave.variance’
fitting: no visible global function definition for ‘hist’
fitting: no visible global function definition for ‘nlm’
fitting: no visible global function definition for ‘write.table’
p.value.compute: no visible global function definition for ‘pnorm’
p.value.compute: no visible global function definition for ‘pt’
random.attack: no visible global function definition for ‘runif’
read.convert_1_2: no visible global function definition for
  ‘read.table’
read.cor.txt: no visible global function definition for ‘read.table’
read.var.txt: no visible global function definition for ‘read.table’
save.cor.txt: no visible global function definition for ‘write.table’
save.var.txt: no visible global function definition for ‘write.table’
sim.equadist: no visible global function definition for ‘write.table’
small.world: no visible global function definition for ‘dist’
small.world: no visible global function definition for ‘write.table’
wave.trans: no visible global function definition for ‘dwt’
wave.trans: no visible global function definition for ‘modwt’
wave.trans: no visible global function definition for ‘brick.wall’
Undefined global functions or variables:
  brick.wall dist dwt hist modwt nlm pnorm pt read.table runif
  wave.correlation wave.variance write.table
Consider adding
  importFrom("graphics", "hist")
  importFrom("stats", "dist", "nlm", "pnorm", "pt", "runif")
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.
File ‘brainwaver/libs/brainwaver.so’:
  Found ‘rand’, possibly from ‘rand’ (C)
    Object: ‘connexity_small_world.o’
File ‘brainwaver/libs/brainwaver.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.
It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘Branching/libs/Branching.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 41.3Mb
  sub-directories of 1Mb or more:
    libs  41.1Mb
Namespace in Imports field not imported from: ‘lme4’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘Rcpp’ ‘profileModel’
  All declared Imports should be used.
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    R     2.9Mb
    doc   2.4Mb
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    bin    2.5Mb
    doc    1.1Mb
    libs   2.5Mb
Namespaces in Imports field not imported from:
  ‘rworldxtra’ ‘sp’
  All declared Imports should be used.
BSGS.Sample: no visible global function definition for ‘rgamma’
BSGS.Simple: no visible global function definition for ‘rgamma’
CompWiseGibbs: no visible global function definition for ‘runif’
CompWiseGibbs: no visible global function definition for ‘rnorm’
CompWiseGibbsSMP: no visible global function definition for ‘rbinom’
CompWiseGibbsSMP: no visible global function definition for ‘runif’
CompWiseGibbsSMP: no visible global function definition for ‘rnorm’
CompWiseGibbsSimple: no visible global function definition for ‘runif’
CompWiseGibbsSimple: no visible global function definition for ‘rnorm’
CompWiseGibbsSimple: no visible global function definition for ‘rgamma’
GroupMH: no visible global function definition for ‘runif’
GroupZ.MH: no visible global function definition for ‘runif’
Undefined global functions or variables:
  rbinom rgamma rnorm runif
Consider adding
  importFrom("stats", "rbinom", "rgamma", "rnorm", "runif")
to your NAMESPACE file.
Found the following significant warnings:
  helpers.c:365:19: warning: absolute value function 'fabsf' given an argument of type 'double' but has parameter of type 'float' which may cause truncation of value [-Wabsolute-value]
See ‘/data/gannet/ripley/R/packages/tests-clang/BSquare.Rcheck/00install.out’ for details.
'library' or 'require' calls to packages already attached by Depends:
  ‘VGAM’ ‘quadprog’ ‘quantreg’
  Please remove these calls from your code.
dqreg: no visible binding for global variable ‘median’
dqreg: no visible global function definition for ‘median’
log_pdf : q0: no visible global function definition for ‘qnorm’
log_pdf : d0: no visible global function definition for ‘dnorm’
log_pdf : q0: no visible global function definition for ‘qt’
log_pdf : d0: no visible global function definition for ‘dt’
log_pdf : q0: no visible global function definition for ‘qweibull’
log_pdf : d0: no visible global function definition for ‘dweibull’
log_pdf : q0: no visible global function definition for ‘qgamma’
log_pdf : d0: no visible global function definition for ‘dgamma’
make.B: no visible global function definition for ‘qnorm’
make.B: no visible global function definition for ‘qweibull’
make.B: no visible global function definition for ‘qgamma’
qr_plot: no visible global function definition for ‘gray’
qr_plot: no visible binding for global variable ‘quantile’
qr_plot: no visible global function definition for ‘polygon’
qr_plot: no visible global function definition for ‘lines’
qreg: no visible global function definition for ‘sd’
qreg: no visible global function definition for ‘lm’
qreg: no visible global function definition for ‘var’
qreg_spline: no visible global function definition for ‘rnorm’
qreg_spline: no visible global function definition for ‘var’
qreg_spline: no visible binding for global variable ‘quantile’
rootfind: no visible global function definition for ‘runif’
Undefined global functions or variables:
  dgamma dnorm dt dweibull gray lines lm median polygon qgamma qnorm qt
  quantile qweibull rnorm runif sd var
Consider adding
  importFrom("grDevices", "gray")
  importFrom("graphics", "lines", "polygon")
  importFrom("stats", "dgamma", "dnorm", "dt", "dweibull", "lm",
             "median", "qgamma", "qnorm", "qt", "quantile", "qweibull",
             "rnorm", "runif", "sd", "var")
to your NAMESPACE file.
Found the following Makefile(s) without a final LF:
  src/Makevars
Some ‘make’ programs ignore lines not ending in LF.
File ‘BSquare/libs/BSquare.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 34.1Mb
  sub-directories of 1Mb or more:
    libs  33.1Mb
installed size is 103.7Mb
  sub-directories of 1Mb or more:
    libs  103.1Mb
File ‘BTR/libs/BTR.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘BTYDplus/libs/BTYDplus.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
The following directory looks like a leftover from 'knitr':
  ‘figure’
Please remove from your package.
File ‘bvarsv/libs/bvarsv.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘bvls/libs/bvls.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘bvpSolve/libs/bvpSolve.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 18.5Mb
  sub-directories of 1Mb or more:
    libs  18.3Mb
'library' or 'require' calls to packages already attached by Depends:
  ‘MASS’ ‘haplo.stats’ ‘msm’
  Please remove these calls from your code.
fitBVS: no visible global function definition for ‘qnorm’
fitBVS: no visible global function definition for ‘model.matrix’
fitBVS: no visible global function definition for ‘as.formula’
fitBVS: no visible global function definition for ‘glm’
fitBVS: no visible global function definition for ‘deviance’
fitBVS: no visible global function definition for ‘pnorm’
plotBVS: no visible global function definition for ‘par’
plotBVS: no visible global function definition for ‘image’
plotBVS: no visible global function definition for ‘axis’
sampleBVS: no visible global function definition for ‘qnorm’
sampleBVS: no visible global function definition for ‘pnorm’
sampleBVS: no visible global function definition for ‘runif’
summaryBVS: no visible global function definition for ‘qnorm’
summaryBVS : inc.prob: no visible global function definition for
  ‘pnorm’
summaryBVS: no visible global function definition for ‘pnorm’
summaryBVS: no visible global function definition for ‘model.matrix’
Undefined global functions or variables:
  as.formula axis deviance glm image model.matrix par pnorm qnorm runif
Consider adding
  importFrom("graphics", "axis", "image", "par")
  importFrom("stats", "as.formula", "deviance", "glm", "model.matrix",
             "pnorm", "qnorm", "runif")
to your NAMESPACE file.
File ‘bytescircle/libs/bytescircle.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
makemim: no visible global function definition for ‘cor’
sigtestMTC: no visible global function definition for ‘p.adjust’
Undefined global functions or variables:
  cor p.adjust
Consider adding
  importFrom("stats", "cor", "p.adjust")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘utils’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘markdown’
  All declared Imports should be used.
File ‘cairoDevice/libs/cairoDevice.so’:
  Found non-API call to R: ‘R_CStackLimit’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘Cairo/libs/Cairo.so’:
  Found non-API calls to R: ‘R_InputHandlers’, ‘addInputHandler’
File ‘Cairo/libs/Cairo.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

Compiled code should not call non-API entry points in R.
It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
calibrate: no visible global function definition for ‘lines’
calibrate: no visible global function definition for ‘text’
canocor: no visible global function definition for ‘cor’
circle: no visible global function definition for ‘points’
dlines: no visible global function definition for ‘lines’
origin: no visible global function definition for ‘par’
origin: no visible global function definition for ‘lines’
rda: no visible global function definition for ‘cor’
rda: no visible global function definition for ‘princomp’
rda: no visible global function definition for ‘var’
textxy: no visible global function definition for ‘text’
Undefined global functions or variables:
  cor lines par points princomp text var
Consider adding
  importFrom("graphics", "lines", "par", "points", "text")
  importFrom("stats", "cor", "princomp", "var")
to your NAMESPACE file.
EK.eqn10.supp: no visible global function definition for ‘integrate’
MH: no visible global function definition for ‘rmvnorm’
MH: no visible global function definition for ‘runif’
computer.model: no visible global function definition for ‘rmvnorm’
create.new.toy.datasets: no visible global function definition for
  ‘rnorm’
model.inadequacy: no visible global function definition for ‘rmvnorm’
prob.psi1: no visible global function definition for ‘dmvnorm’
prob.psi2: no visible global function definition for ‘dmvnorm’
prob.theta: no visible global function definition for ‘dmvnorm’
sample.theta: no visible global function definition for ‘rmvnorm’
stage1: no visible global function definition for ‘optim’
stage2: no visible global function definition for ‘optim’
stage3: no visible global function definition for ‘optim’
Undefined global functions or variables:
  dmvnorm integrate optim rmvnorm rnorm runif
Consider adding
  importFrom("stats", "integrate", "optim", "rnorm", "runif")
to your NAMESPACE file.
File ‘CAMAN/libs/CAMAN.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
CAM: no visible global function definition for ‘object.size’
CAM: no visible global function definition for ‘as’
computeScoreMat: no visible global function definition for ‘combn’
computeScoreMat: no visible global function definition for ‘var’
computeScoreMatParallel: no visible global function definition for
  ‘var’
selLm: no visible global function definition for ‘lm’
selLm: no visible global function definition for ‘coef’
train_gam: no visible global function definition for ‘formula’
train_lasso: no visible global function definition for ‘predict’
train_linear: no visible global function definition for ‘lm’
Undefined global functions or variables:
  as coef combn formula lm object.size predict var
Consider adding
  importFrom("methods", "as")
  importFrom("stats", "coef", "formula", "lm", "predict", "var")
  importFrom("utils", "combn", "object.size")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    doc    1.1Mb
    libs   3.5Mb
installed size is  6.5Mb
  sub-directories of 1Mb or more:
    R        1.1Mb
    data     1.5Mb
    models   2.4Mb
Namespaces in Imports field not imported from:
  ‘animation’ ‘devtools’ ‘gapminder’ ‘knitr’ ‘rlist’ ‘rmarkdown’
  ‘roxygen2’ ‘sde’ ‘shiny’ ‘tidyverse’ ‘usethis’ ‘utils’
  All declared Imports should be used.
installed size is  6.9Mb
  sub-directories of 1Mb or more:
    doc    3.5Mb
    libs   2.9Mb
Namespaces in Imports field not imported from:
  ‘Rcpp’ ‘cowplot’ ‘dplyr’ ‘ranger’ ‘rms’ ‘survival’ ‘tidyverse’
  All declared Imports should be used.
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    libs   4.6Mb
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    libs   6.0Mb
Namespace in Imports field not imported from: ‘tidyverse’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘Matrix’
  All declared Imports should be used.
File ‘catIrt/libs/catIrt.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘caTools/libs/caTools.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
mi.inference: no visible binding for global variable ‘var’
mi.inference: no visible global function definition for ‘qt’
mi.inference: no visible global function definition for ‘pt’
Undefined global functions or variables:
  pt qt var
Consider adding
  importFrom("stats", "pt", "qt", "var")
to your NAMESPACE file.
File ‘cat/libs/cat.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.5Mb
  sub-directories of 1Mb or more:
    libs   5.9Mb
binParamPosteriorSampling: no visible global function definition for
  ‘rbeta’
bindagMonteCarloCausalEffect: no visible global function definition for
  ‘runif’
getBinDAGModelData: no visible global function definition for ‘runif’
logitDist: no visible global function definition for ‘runif’
logitDist: no visible global function definition for ‘rnorm’
simulateWitnessModel: no visible global function definition for ‘runif’
summary.covsearch: no visible global function definition for ‘quantile’
summary.iv: no visible global function definition for ‘quantile’
summary.wpp: no visible global function definition for ‘quantile’
Undefined global functions or variables:
  quantile rbeta rnorm runif
Consider adding
  importFrom("stats", "quantile", "rbeta", "rnorm", "runif")
to your NAMESPACE file.
ConstructModel: warning in AddDynamicRegression(ss, formula, data =
  data, sigma.mean.prior = sigma.mean.prior): partial argument match of
  'sigma.mean.prior' to 'sigma.mean.prior.DEPRECATED'
BinaryCut: no visible global function definition for ‘quantile’
CleanNaFromContinuousFunction: no visible global function definition
  for ‘median’
CleanNaFromContinuousFunction: no visible global function definition
  for ‘na.omit’
GetMetadata.Connect: no visible global function definition for
  ‘dbGetQuery’
GetRawData.Connect: no visible global function definition for
  ‘dbGetQuery’
Linearity: no visible global function definition for ‘median’
PredictivePowerCv: no visible global function definition for ‘sd’
ReadCausataCsv: no visible global function definition for ‘read.csv’
ToPmml.GlmnetModelDefinition: no visible global function definition for
  ‘coef’
ToPmml.GlmnetModelDefinition: no visible global function definition for
  ‘terms.formula’
ValidateModel: no visible global function definition for ‘predict’
predict.GlmnetModelDefinition: no visible global function definition
  for ‘model.matrix’
predict.GlmnetModelDefinition: no visible binding for global variable
  ‘contrasts’
predict.GlmnetModelDefinition: no visible global function definition
  for ‘predict’
Undefined global functions or variables:
  coef contrasts dbGetQuery median model.matrix na.omit predict
  quantile read.csv sd terms.formula
Consider adding
  importFrom("stats", "coef", "contrasts", "median", "model.matrix",
             "na.omit", "predict", "quantile", "sd", "terms.formula")
  importFrom("utils", "read.csv")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘prettydoc’
  All declared Imports should be used.
File ‘cbird/libs/cbird.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘ccaPP/libs/ccaPP.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
estim.regul: warning in matrix(res, nc = length(grid2)): partial
  argument match of 'nc' to 'ncol'
comput: no visible global function definition for ‘cor’
img.estim.regul: no visible global function definition for ‘par’
img.estim.regul: no visible global function definition for ‘image’
img.estim.regul: no visible global function definition for
  ‘heat.colors’
img.estim.regul: no visible global function definition for ‘axis’
img.estim.regul: no visible global function definition for ‘box’
img.matcor: no visible global function definition for ‘par’
img.matcor: no visible global function definition for ‘image’
img.matcor: no visible global function definition for ‘box’
img.matcor: no visible global function definition for ‘abline’
img.matcor: no visible global function definition for ‘layout’
loo: no visible global function definition for ‘cor’
matcor: no visible global function definition for ‘cor’
plt.cc: no visible global function definition for ‘par’
plt.cc: no visible global function definition for ‘layout’
plt.indiv: no visible global function definition for ‘plot’
plt.indiv: no visible global function definition for ‘text’
plt.indiv: no visible global function definition for ‘abline’
plt.var: no visible global function definition for ‘plot’
plt.var: no visible global function definition for ‘points’
plt.var: no visible global function definition for ‘text’
plt.var: no visible global function definition for ‘abline’
plt.var: no visible global function definition for ‘lines’
rcc: no visible global function definition for ‘var’
rcc: no visible global function definition for ‘cov’
Undefined global functions or variables:
  abline axis box cor cov heat.colors image layout lines par plot
  points text var
Consider adding
  importFrom("grDevices", "heat.colors")
  importFrom("graphics", "abline", "axis", "box", "image", "layout",
             "lines", "par", "plot", "points", "text")
  importFrom("stats", "cor", "cov", "var")
to your NAMESPACE file.
prepare_Rd: estim.regul.Rd:24-26: Dropping empty section \details
prepare_Rd: img.estim.regul.Rd:15-17: Dropping empty section \details
prepare_Rd: img.estim.regul.Rd:24-25: Dropping empty section \examples
ccd.sequential: no visible global function definition for ‘qchisq’
dominate.random.sample: no visible global function definition for
  ‘runif’
draw.circle: no visible global function definition for ‘polygon’
juggle2: no visible global function definition for ‘rbinom’
plot.cccd: no visible global function definition for ‘gray’
plot.cccd: no visible global function definition for ‘plot’
plot.cccd: no visible global function definition for ‘points’
plot.cccdClassifier: no visible global function definition for ‘points’
plot.cccdClassifier: no visible global function definition for ‘plot’
plot.ccd: no visible global function definition for ‘plot’
Undefined global functions or variables:
  gray plot points polygon qchisq rbinom runif
Consider adding
  importFrom("grDevices", "gray")
  importFrom("graphics", "plot", "points", "polygon")
  importFrom("stats", "qchisq", "rbinom", "runif")
to your NAMESPACE file.
VD: no visible binding for global variable ‘var’
stratcc : <anonymous>: no visible global function definition for
  ‘hclust’
stratcc : <anonymous>: no visible global function definition for
  ‘cutree’
Undefined global functions or variables:
  cutree hclust var
Consider adding
  importFrom("stats", "cutree", "hclust", "var")
to your NAMESPACE file.
Rd file 'stratcc.Rd':
  \usage lines wider than 90 characters:
     stratcc(x, groups, alloc = "Pro", fraction = 0.1, clustering = FALSE, cluster_method = "ward")

These lines will be truncated in the PDF manual.
installed size is 19.2Mb
  sub-directories of 1Mb or more:
    libs  18.9Mb
File ‘cccp/libs/cccp.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
ccda.main: no visible global function definition for ‘hclust’
ccda.main: no visible global function definition for ‘dist’
ccda.main: no visible global function definition for ‘cutree’
ccda.main: no visible global function definition for ‘quantile’
percentage: no visible global function definition for ‘predict’
plotccda.cluster: no visible global function definition for ‘par’
plotccda.cluster: no visible global function definition for ‘plot’
plotccda.q95: no visible global function definition for ‘par’
plotccda.q95: no visible global function definition for ‘plot’
plotccda.q95: no visible global function definition for ‘density’
plotccda.q95: no visible global function definition for ‘abline’
plotccda.q95: no visible global function definition for ‘legend’
plotccda.q95: no visible global function definition for ‘strwidth’
plotccda.q95: no visible global function definition for ‘strheight’
plotccda.results: no visible global function definition for ‘par’
plotccda.results: no visible global function definition for ‘plot’
plotccda.results: no visible global function definition for ‘axis’
plotccda.results: no visible global function definition for ‘lines’
plotccda.results: no visible global function definition for ‘legend’
plotccda.results: no visible global function definition for ‘strwidth’
plotccda.results: no visible global function definition for ‘strheight’
Undefined global functions or variables:
  abline axis cutree density dist hclust legend lines par plot predict
  quantile strheight strwidth
Consider adding
  importFrom("graphics", "abline", "axis", "legend", "lines", "par",
             "plot", "strheight", "strwidth")
  importFrom("stats", "cutree", "density", "dist", "hclust", "predict",
             "quantile")
to your NAMESPACE file.
Namespaces in Imports field not imported from:
  ‘doParallel’ ‘foreach’
  All declared Imports should be used.
dcc.est: no visible global function definition for ‘cov’
dcc.estimation1: no visible global function definition for ‘optim’
dcc.estimation2: no visible global function definition for
  ‘constrOptim’
dlc: no visible global function definition for ‘cov’
eccc.estimation: no visible global function definition for ‘optim’
hh.test : uni.garch : uni.garch.est : garch.ll: no visible global
  function definition for ‘dnorm’
hh.test : uni.garch : uni.garch.est: no visible global function
  definition for ‘optim’
hh.test: no visible global function definition for ‘lm’
hh.test: no visible global function definition for ‘pchisq’
jb.test: no visible global function definition for ‘pchisq’
ljung.box.test: no visible global function definition for ‘pchisq’
nt.test : uni.garch : uni.garch.est : garch.ll: no visible global
  function definition for ‘dnorm’
nt.test : uni.garch : uni.garch.est: no visible global function
  definition for ‘optim’
nt.test: no visible global function definition for ‘lm’
nt.test: no visible global function definition for ‘pchisq’
rob.kr: no visible global function definition for ‘quantile’
rob.sk: no visible global function definition for ‘quantile’
Undefined global functions or variables:
  constrOptim cov dnorm lm optim pchisq quantile
Consider adding
  importFrom("stats", "constrOptim", "cov", "dnorm", "lm", "optim",
             "pchisq", "quantile")
to your NAMESPACE file.
File ‘ccgarch/libs/ccgarch.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following significant warnings:
  ./MCMC_prob.h:2091:41: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
See ‘/data/gannet/ripley/R/packages/tests-clang/CCMnet.Rcheck/00install.out’ for details.
File ‘CCMnet/libs/CCMnet.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'library' or 'require' call to ‘bitops’ which was already attached by Depends.
  Please remove these calls from your code.
Namespace in Imports field not imported from: ‘units’
  All declared Imports should be used.
bw: no visible global function definition for ‘optimize’
Undefined global functions or variables:
  optimize
Consider adding
  importFrom("stats", "optimize")
to your NAMESPACE file.
File ‘cdcsis/libs/cdcsis.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘lazyeval’ ‘purrr’ ‘roxygen2’
  All declared Imports should be used.
Running examples in ‘CDECRetrieve-Ex.R’ failed
The error most likely occurred in:

> ### Name: cdec_rt
> ### Title: Get a rating table
> ### Aliases: cdec_rt
> 
> ### ** Examples
> 
> cdec_rt("abj") # get the stage to rating curve for ABJ
Error in open.connection(x, "rb") : 
  Timeout was reached: Connection timed out after 10000 milliseconds
Calls: cdec_rt ... %in% -> cdec_rt_list -> <Anonymous> -> read_html.default
Execution halted
Error in re-building vignettes:
  ...
Quitting from lines 55-69 (CDECRetrieve.Rmd) 
Error: processing vignette 'CDECRetrieve.Rmd' failed with diagnostics:
Timeout was reached: Connection timed out after 10000 milliseconds
Execution halted
File ‘CDLasso/libs/CDLasso.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    data   1.3Mb
    libs   3.3Mb
File ‘CDVine/libs/CDVine.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    extdata   5.8Mb
File ‘cec2005benchmark/libs/cec2005benchmark.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  9.5Mb
  sub-directories of 1Mb or more:
    extdata   9.3Mb
File ‘cec2013/libs/cec2013.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Packages in Depends field not imported from:
  ‘gplots’ ‘minpack.lm’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
erf: no visible global function definition for ‘pnorm’
fitVolDist: no visible global function definition for ‘nls.lm’
fitVolDist: no visible global function definition for ‘nls.lm.control’
fitVolDist: no visible global function definition for ‘optim’
fitVolDist: no visible global function definition for ‘relist’
print.fitVolDist: no visible global function definition for ‘coef’
print.fitVolDist: no visible global function definition for ‘deviance’
print.fitVolDist: no visible global function definition for ‘pt’
print.fitVolDist: no visible global function definition for
  ‘printCoefmat’
resFunChiSq: no visible global function definition for ‘relist’
volEq7: no visible global function definition for ‘integrate’
Undefined global functions or variables:
  coef deviance integrate nls.lm nls.lm.control optim pnorm
  printCoefmat pt relist
Consider adding
  importFrom("stats", "coef", "deviance", "integrate", "optim", "pnorm",
             "printCoefmat", "pt")
  importFrom("utils", "relist")
to your NAMESPACE file.
installed size is  9.0Mb
  sub-directories of 1Mb or more:
    data   2.8Mb
    libs   5.2Mb
cenNID: no visible global function definition for ‘sd’
Undefined global functions or variables:
  sd
Consider adding
  importFrom("stats", "sd")
to your NAMESPACE file.
File ‘censNID/libs/censNID.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Unexported objects imported by ':::' calls:
  ‘copula:::dCdu’ ‘copula:::fitCopStart’
  See the note in ?`:::` about the use of this operator.
Namespace in Imports field not imported from: ‘data.table’
  All declared Imports should be used.
CM: no visible global function definition for ‘sd’
Erf: no visible global function definition for ‘pnorm’
Erfc: no visible global function definition for ‘pnorm’
boot.Cenarma: no visible global function definition for ‘coef’
boot.Cenarma: no visible global function definition for ‘arima.sim’
cenarma: no visible global function definition for ‘arima’
cenarma: no visible global function definition for ‘coef’
cenarma: no visible global function definition for ‘ARMAacf’
cenarma: no visible global function definition for ‘var’
plot.cents: no visible global function definition for ‘plot’
plot.cents: no visible global function definition for ‘segments’
plot.cents: no visible global function definition for ‘rgb’
plot.cents: no visible global function definition for ‘points’
rcarma: no visible global function definition for ‘arima.sim’
rcarma: no visible global function definition for ‘quantile’
scenNID: no visible global function definition for ‘sd’
se.Cenarma: no visible global function definition for ‘coef’
se.Cenarma: no visible global function definition for ‘sd’
Undefined global functions or variables:
  ARMAacf arima arima.sim coef plot pnorm points quantile rgb sd
  segments var
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("graphics", "plot", "points", "segments")
  importFrom("stats", "ARMAacf", "arima", "arima.sim", "coef", "pnorm",
             "quantile", "sd", "var")
to your NAMESPACE file.
File ‘cents/libs/cents.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘knitr’
  All declared Imports should be used.
src/Makevars: SHLIB_OPENMP_CFLAGS is included in PKG_LIBS but linking is by C++
  src/Makevars: it is not portable to include SHLIB_OPENMP_*' macros in PKG_CPPFLAGS
Use of these macros is discussed in sect 1.2.1.1 of ‘Writing R
Extensions’. The macros for different languages may differ so the
matching macro must be used in PKG_CXXFLAGS (etc) and match that used
in PKG_LIBS (except for Fortran: see the manual).
PKG_CPPFLAGS is used for both C and C++ code so it is not portable to
use it for these macros.
File ‘cgAUC/libs/cgAUC.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
sw.plot : <anonymous>: no visible global function definition for
  ‘median’
sw.plot : <anonymous>: no visible global function definition for ‘mad’
sw.plot : my.line: no visible global function definition for ‘lines’
sw.plot : island.line: no visible global function definition for
  ‘lines’
sw.plot: no visible global function definition for ‘plot’
sw.plot: no visible global function definition for ‘rug’
sw.plot: no visible global function definition for ‘axis’
sw.plot: no visible global function definition for ‘mtext’
sw.plot: no visible global function definition for ‘abline’
sw.plot: no visible global function definition for ‘points’
sw.rob : <anonymous>: no visible global function definition for
  ‘median’
sw.rob : <anonymous>: no visible global function definition for ‘mad’
sw.threshold : <anonymous>: no visible global function definition for
  ‘median’
sw.threshold : <anonymous>: no visible global function definition for
  ‘mad’
Undefined global functions or variables:
  abline axis lines mad median mtext plot points rug
Consider adding
  importFrom("graphics", "abline", "axis", "lines", "mtext", "plot",
             "points", "rug")
  importFrom("stats", "mad", "median")
to your NAMESPACE file.
File ‘cgh/libs/cgh.so’:
  Found no call to: ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘grDevices’
  All declared Imports should be used.
Found the following significant warnings:
  costfunctions.c:33:12: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  costfunctions.c:57:12: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
See ‘/data/gannet/ripley/R/packages/tests-clang/changepoint.np.Rcheck/00install.out’ for details.
File ‘changepoint.np/libs/changepoint.np.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘changepoint/libs/changepoint.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Hartree2Joule: no visible binding for global variable
  ‘universalConstants’
Hertz2Joule: no visible binding for global variable
  ‘universalConstants’
Joule2Hartree: no visible binding for global variable
  ‘universalConstants’
Joule2Hertz: no visible binding for global variable
  ‘universalConstants’
Joule2Kelvin: no visible binding for global variable
  ‘universalConstants’
Joule2centimeterMinusOne: no visible binding for global variable
  ‘universalConstants’
Joule2electronVolt: no visible binding for global variable
  ‘universalConstants’
Joule2kiloCaloriePerMole: no visible binding for global variable
  ‘universalConstants’
Joule2kiloJoulePerMole: no visible binding for global variable
  ‘universalConstants’
KMC: no visible global function definition for ‘runif’
Kelvin2Joule: no visible binding for global variable
  ‘universalConstants’
LandauZener: no visible binding for global variable
  ‘universalConstants’
LandauZenerProbability: no visible binding for global variable
  ‘universalConstants’
Marcus: no visible binding for global variable ‘universalConstants’
MarcusLevichJortner: no visible binding for global variable
  ‘universalConstants’
centimeterMinusOne2Joule: no visible binding for global variable
  ‘universalConstants’
electronVolt2Joule: no visible binding for global variable
  ‘universalConstants’
kiloCaloriePerMole2Joule: no visible binding for global variable
  ‘universalConstants’
kiloJoulePerMole2Joule: no visible binding for global variable
  ‘universalConstants’
Undefined global functions or variables:
  runif universalConstants
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
File ‘ChargeTransport/libs/ChargeTransport.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'library' or 'require' call to ‘RCurl’ which was already attached by Depends.
  Please remove these calls from your code.
Packages in Depends field not imported from:
  ‘RCurl’ ‘bitops’ ‘methods’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
createDataset: no visible global function definition for ‘read.csv’
createInventory: no visible global function definition for ‘read.csv’
downloadMaster: no visible global function definition for
  ‘getURLContent’
downloadMaster: no visible global function definition for ‘read.csv’
downloadMaster: no visible global function definition for ‘write.csv’
getMissingScrape: no visible global function definition for ‘read.csv’
readLocalMaster: no visible global function definition for ‘read.csv’
readMonthlyCsv: no visible global function definition for ‘read.csv’
scrapeToCsv: no visible global function definition for ‘download.file’
writeData: no visible global function definition for ‘write.csv’
writeGhcn: no visible global function definition for ‘write.table’
writeInventory: no visible global function definition for ‘write.table’
writeMonthlyStations: no visible global function definition for
  ‘read.csv’
writeMonthlyStations: no visible global function definition for
  ‘write.csv’
Undefined global functions or variables:
  download.file getURLContent read.csv write.csv write.table
Consider adding
  importFrom("utils", "download.file", "read.csv", "write.csv",
             "write.table")
to your NAMESPACE file.
src/Makevars: SHLIB_OPENMP_CFLAGS is included in PKG_LIBS but linking is by C++
  src/Makevars.in: SHLIB_OPENMP_CFLAGS is included in PKG_LIBS but linking is by C++
  src/Makevars.win: SHLIB_OPENMP_CFLAGS is included in PKG_LIBS but linking is by C++
Use of these macros is discussed in sect 1.2.1.1 of ‘Writing R
Extensions’. The macros for different languages may differ so the
matching macro must be used in PKG_CXXFLAGS (etc) and match that used
in PKG_LIBS (except for Fortran: see the manual).
Rd file 'chebR.Rd':
  \examples lines wider than 100 characters:
     return(list(coefs=rlist$xx[1:n],resids=rlist$bb[1:m],rank=rlist$rank,iter=rlist$iter,ocode=rlist$ocode))

These lines will be truncated in the PDF manual.
File ‘cheb/libs/cheb.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘datasets’ ‘foreach’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘dbplyr’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘gamlss.dist’
  All declared Imports should be used.
Running examples in ‘chillR-Ex.R’ failed
The error most likely occurred in:

> ### Name: handle_ucipm
> ### Title: List, download or convert to chillR format data from the UCIPM
> ###   database
> ### Aliases: handle_ucipm
> ### Keywords: utilities
> 
> ### ** Examples
> 
> 
> #handle_ucipm(action="list_stations",location=c(x=-122,y=38.5),time_interval=c(2012,2012))
> gw<-handle_ucipm(action="download_weather",location="WINTERS.A",time_interval=c(2012,2012))
Error in read.table(file = file, header = header, sep = sep, quote = quote,  : 
  no lines available in input
Calls: handle_ucipm -> read.csv -> read.table
Execution halted
File ‘ChIPtest/libs/ChIPtest.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘knitr’ ‘tools’
  All declared Imports should be used.
installed size is 18.0Mb
  sub-directories of 1Mb or more:
    data  17.9Mb
parse_counts: no visible global function definition for ‘na.omit’
Undefined global functions or variables:
  na.omit
Consider adding
  importFrom("stats", "na.omit")
to your NAMESPACE file.
combineToSingleMatrix: no visible global function definition for
  ‘read.table’
combineToSingleMatrix: no visible global function definition for
  ‘write.table’
compareCIM: no visible global function definition for ‘sd’
correctData: no visible global function definition for ‘wd’
correctData: no visible global function definition for ‘threshold’
correctData: no visible binding for global variable ‘madmad’
correctData: no visible global function definition for ‘wr’
Undefined global functions or variables:
  madmad read.table sd threshold wd wr write.table
Consider adding
  importFrom("stats", "sd")
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.
File ‘CHsharp/libs/CHsharp.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘Matrix’ ‘stringr’
  All declared Imports should be used.
File ‘CIFsmry/libs/CIFsmry.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘circlize’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘shinyBS’
  All declared Imports should be used.
installed size is 14.3Mb
  sub-directories of 1Mb or more:
    libs  14.0Mb
'library' or 'require' call to ‘rggobi’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Found the following apparent S3 methods exported but not registered:
  plot.classification plot.scores
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
classify.bug: no visible global function definition for
  ‘txtProgressBar’
classify.bug: no visible global function definition for
  ‘setTxtProgressBar’
plot.scores: no visible binding for global variable ‘quantile’
plot.scores: no visible global function definition for ‘runif’
plot.scores: no visible binding for global variable ‘median’
scores.gpcm.bug: no visible global function definition for
  ‘txtProgressBar’
scores.gpcm.bug: no visible global function definition for
  ‘setTxtProgressBar’
across.reps,classification: no visible global function definition for
  ‘sd’
Undefined global functions or variables:
  median quantile runif sd setTxtProgressBar txtProgressBar
Consider adding
  importFrom("stats", "median", "quantile", "runif", "sd")
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
File ‘classify/libs/classify.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
.boxRadial: no visible global function definition for ‘predict’
.radialSVM: no visible global function definition for ‘predict’
cfPredict: no visible global function definition for ‘predict’
getPerm5Num: no visible global function definition for ‘median’
getPerm5Num: no visible global function definition for ‘quantile’
ggClassPred: no visible global function definition for ‘ftable’
ggEnsHist: no visible global function definition for ‘sd’
ggPermHist: no visible global function definition for ‘sd’
Undefined global functions or variables:
  ftable median predict quantile sd
Consider adding
  importFrom("stats", "ftable", "median", "predict", "quantile", "sd")
to your NAMESPACE file.
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    libs   5.9Mb
Files which contain pragma(s) suppressing diagnostics:
  ‘src/cld_3/protos/feature_extractor.pb.h’
  ‘src/cld_3/protos/sentence.pb.h’ ‘src/cld_3/protos/task_spec.pb.h’
installed size is 24.4Mb
  sub-directories of 1Mb or more:
    libs  23.5Mb
File ‘clere/libs/clere.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘scales’ ‘sp’
  All declared Imports should be used.
File ‘ClickClust/libs/ClickClust.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
clime: no visible global function definition for ‘cov’
cv.clime: no visible global function definition for ‘cov’
cv.clime: no visible binding for global variable ‘sd’
Undefined global functions or variables:
  cov sd
Consider adding
  importFrom("stats", "cov", "sd")
to your NAMESPACE file.
installed size is 12.7Mb
  sub-directories of 1Mb or more:
    libs   5.7Mb
File ‘clogitboost/libs/clogitboost.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
socp: no visible global function definition for ‘as’
Undefined global functions or variables:
  as
Consider adding
  importFrom("methods", "as")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Rd file 'socp.Rd':
  \usage lines wider than 90 characters:
     socp(A, b, c, kvec, type = rep('q',length(kvec)), use_sparse=TRUE, gamma_fac=.95, delta0 = .75, sigma0 = .25, mu0 = 0.01, zero_tol = 1e ... [TRUNCATED]

These lines will be truncated in the PDF manual.
File ‘clues/libs/clues.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'library' or 'require' call to ‘ggplot2’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
File ‘clustering.sc.dp/libs/clustering.sc.dp.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘R6’ ‘infuser’ ‘purrr’
  All declared Imports should be used.
installed size is  7.4Mb
  sub-directories of 1Mb or more:
    libs   6.2Mb
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    doc   2.9Mb
    pdf   2.2Mb
File ‘ClusterStability/libs/ClusterStability.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
clustomit: no visible binding for global variable ‘weighted.mean’
sim_unif : multivariate_unif: no visible global function definition for
  ‘runif’
Undefined global functions or variables:
  runif weighted.mean
Consider adding
  importFrom("stats", "runif", "weighted.mean")
to your NAMESPACE file.
File ‘clusteval/libs/clusteval.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    libs   4.6Mb
File ‘ClustMMDD/libs/ClustMMDD.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'library' or 'require' calls in package code:
  ‘Biobase’ ‘GO.db’ ‘annotate’ ‘kohonen’ ‘mclust’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
File ‘clv/libs/clv.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
CMF: no visible global function definition for ‘rnorm’
Undefined global functions or variables:
  rnorm
Consider adding
  importFrom("stats", "rnorm")
to your NAMESPACE file.
File ‘CMF/libs/CMF.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
ComputeLambdaAndNuHat.shiftCMPest: no visible global function
  definition for ‘nlminb’
ControlCharts: no visible global function definition for
  ‘com.log.density’
ControlCharts: no visible global function definition for ‘plot’
ControlCharts: no visible global function definition for ‘abline’
Undefined global functions or variables:
  abline com.log.density nlminb plot
Consider adding
  importFrom("graphics", "abline", "plot")
  importFrom("stats", "nlminb")
to your NAMESPACE file.
File ‘cmprskQR/libs/cmprskQR.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
crr: no visible binding for global variable ‘na.omit’
crr: no visible global function definition for ‘approx’
cuminc: no visible binding for global variable ‘na.omit’
cuminc: no visible global function definition for ‘pchisq’
plot.cuminc: no visible global function definition for ‘par’
plot.cuminc: no visible global function definition for ‘plot’
plot.cuminc: no visible binding for global variable ‘legend’
plot.cuminc: no visible global function definition for ‘lines’
plot.predict.crr: no visible global function definition for ‘plot’
plot.predict.crr: no visible global function definition for ‘lines’
print.crr: no visible global function definition for ‘pnorm’
summary.crr: no visible global function definition for ‘pnorm’
summary.crr: no visible global function definition for ‘qnorm’
Undefined global functions or variables:
  approx legend lines na.omit par pchisq plot pnorm qnorm
Consider adding
  importFrom("graphics", "legend", "lines", "par", "plot")
  importFrom("stats", "approx", "na.omit", "pchisq", "pnorm", "qnorm")
to your NAMESPACE file.
File ‘cmprsk/libs/cmprsk.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
copynumberBootstrap: no visible global function definition for
  ‘txtProgressBar’
copynumberBootstrap: no visible global function definition for
  ‘quantile’
copynumberBootstrap: no visible global function definition for
  ‘setTxtProgressBar’
gethits: no visible global function definition for ‘read.table’
normalizeGC: no visible global function definition for ‘median’
plotCNOGpro: no visible global function definition for ‘par’
plotCNOGpro: no visible global function definition for ‘plot’
plotCNOGpro: no visible global function definition for ‘rainbow’
plotCNOGpro: no visible global function definition for ‘density’
plotCNOGpro: no visible global function definition for ‘polygon’
plotCNOGpro: no visible global function definition for ‘lines’
plotCNOGpro: no visible global function definition for ‘legend’
plotCNOGpro: no visible global function definition for ‘boxplot’
sampleChromosome: no visible global function definition for ‘median’
sampleChromosome: no visible binding for global variable ‘var’
setupEmissionMatrix: no visible global function definition for ‘dgeom’
store: no visible global function definition for ‘write.table’
Undefined global functions or variables:
  boxplot density dgeom legend lines median par plot polygon quantile
  rainbow read.table setTxtProgressBar txtProgressBar var write.table
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "boxplot", "legend", "lines", "par", "plot",
             "polygon")
  importFrom("stats", "density", "dgeom", "median", "quantile", "var")
  importFrom("utils", "read.table", "setTxtProgressBar",
             "txtProgressBar", "write.table")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘rmarkdown’
  All declared Imports should be used.
CNclusterNcenter: no visible global function definition for ‘median’
CNclusterNcenter: no visible binding for global variable ‘var’
breakIntoGaps: no visible global function definition for ‘runif’
centerprob: no visible global function definition for ‘pnorm’
getz: no visible global function definition for ‘predict’
smad: no visible global function definition for ‘mad’
smedian: no visible global function definition for ‘median’
smedian.sample: no visible global function definition for ‘median’
smedmad: no visible global function definition for ‘median’
smedmad: no visible global function definition for ‘mad’
Undefined global functions or variables:
  mad median pnorm predict runif var
Consider adding
  importFrom("stats", "mad", "median", "pnorm", "predict", "runif",
             "var")
to your NAMESPACE file.
installed size is  9.1Mb
  sub-directories of 1Mb or more:
    data     3.5Mb
    exdata   5.5Mb
Namespaces in Imports field not imported from:
  'ComplexHeatmap' 'DT' 'blockseg' 'readr'
  All declared Imports should be used.
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    R      1.3Mb
    libs   4.3Mb
coalescentMCMC: no visible global function definition for
  ‘packageVersion’
coalescentMCMC : getparams: no visible global function definition for
  ‘nlminb’
sim.coalescent: no visible global function definition for ‘plot’
sim.coalescent: no visible global function definition for ‘segments’
sim.coalescent: no visible global function definition for ‘points’
Undefined global functions or variables:
  nlminb packageVersion plot points segments
Consider adding
  importFrom("graphics", "plot", "points", "segments")
  importFrom("stats", "nlminb")
  importFrom("utils", "packageVersion")
to your NAMESPACE file.
'library' or 'require' calls in package code:
  ‘lars’ ‘randomForest’ ‘ridge’ ‘snowfall’ ‘tree’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
File ‘COBRA/libs/COBRA.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Package in Depends field not imported from: ‘coda’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
File ‘codadiags/libs/codadiags.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘graphics’ ‘pander’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘memoise’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘methods’ ‘readr’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘parallel’
  All declared Imports should be used.
File ‘coenoflex/libs/coenoflex.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
BMDE: no visible global function definition for ‘quantile’
BMDU: no visible global function definition for ‘runif’
BMDU: no visible global function definition for ‘quantile’
FS: no visible global function definition for ‘qnorm’
GM: no visible global function definition for ‘qchisq’
QH: no visible global function definition for ‘qchisq’
SG : sgp: no visible global function definition for ‘ppois’
SG : sgp: no visible global function definition for ‘dpois’
WALD: no visible global function definition for ‘qchisq’
WALDCC: no visible global function definition for ‘qchisq’
WS: no visible global function definition for ‘qchisq’
Undefined global functions or variables:
  dpois ppois qchisq qnorm quantile runif
Consider adding
  importFrom("stats", "dpois", "ppois", "qchisq", "qnorm", "quantile",
             "runif")
to your NAMESPACE file.
File ‘collUtils/libs/collUtils.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘flashClust’ ‘speedglm’
  All declared Imports should be used.
cICA: no visible global function definition for ‘mvfft’
cICA: no visible global function definition for ‘ar.yw’
cICA: no visible global function definition for ‘rnorm’
scICA: no visible global function definition for ‘rnorm’
Undefined global functions or variables:
  ar.yw mvfft rnorm
Consider adding
  importFrom("stats", "ar.yw", "mvfft", "rnorm")
to your NAMESPACE file.
Namespaces in Imports field not imported from:
  ‘grid’ ‘gridExtra’
  All declared Imports should be used.
File ‘colorspace/libs/colorspace.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    doc       2.3Mb
    extdata   2.1Mb
Namespace in Imports field not imported from: ‘crayon’
  All declared Imports should be used.
p.Johansen: no visible global function definition for ‘pgamma’
plotComT: no visible global function definition for ‘axis’
plotComT: no visible global function definition for ‘title’
plotComT: no visible global function definition for ‘lines’
plotComT: no visible global function definition for ‘box’
q.Johansen: no visible global function definition for ‘qgamma’
Undefined global functions or variables:
  axis box lines pgamma qgamma title
Consider adding
  importFrom("graphics", "axis", "box", "lines", "title")
  importFrom("stats", "pgamma", "qgamma")
to your NAMESPACE file.
CommT.anova: no visible global function definition for ‘aov’
CommT.legendpos: no visible global function definition for ‘quantile’
CommT.plotcolors: no visible global function definition for ‘hcl’
Undefined global functions or variables:
  aov hcl quantile
Consider adding
  importFrom("grDevices", "hcl")
  importFrom("stats", "aov", "quantile")
to your NAMESPACE file.
compareC: no visible global function definition for ‘pnorm’
Undefined global functions or variables:
  pnorm
Consider adding
  importFrom("stats", "pnorm")
to your NAMESPACE file.
File ‘compareC/libs/compareC.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘magrittr’ ‘stringr’
  All declared Imports should be used.
installed size is  7.0Mb
  sub-directories of 1Mb or more:
    app   2.7Mb
    doc   2.3Mb
'library' or 'require' call to ‘XML’ which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: ‘XML’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
compareODM: no visible global function definition for ‘xmlRoot’
compareODM: no visible global function definition for ‘xmlTreeParse’
compareODM: no visible global function definition for ‘xmlChildren’
compareODM: no visible global function definition for ‘xmlAttrs’
compareODM: no visible global function definition for ‘xmlValue’
Undefined global functions or variables:
  xmlAttrs xmlChildren xmlRoot xmlTreeParse xmlValue
two.level.comparison.items: no visible global function definition for
  ‘complete.cases’
two.level.components: no visible global function definition for
  ‘complete.cases’
plot,ece: no visible global function definition for ‘par’
plot,ece: no visible global function definition for ‘points’
plot,ece: no visible global function definition for ‘mtext’
plot,ece: no visible global function definition for ‘legend’
plot,ece: no visible global function definition for ‘abline’
Undefined global functions or variables:
  abline complete.cases legend mtext par points
Consider adding
  importFrom("graphics", "abline", "legend", "mtext", "par", "points")
  importFrom("stats", "complete.cases")
to your NAMESPACE file.
installed size is 30.9Mb
  sub-directories of 1Mb or more:
    R      1.5Mb
    libs  29.3Mb
installed size is 22.7Mb
  sub-directories of 1Mb or more:
    libs  22.2Mb
Namespaces in Imports field not imported from:
  ‘R6’ ‘checkmate’ ‘methods’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘PearsonDS’ ‘VGAM’ ‘actuar’ ‘fExtremes’ ‘rmutil’
  All declared Imports should be used.
CIFplot: no visible global function definition for ‘plot’
CIFplot: no visible global function definition for ‘gray’
CIFplot: no visible global function definition for ‘lines’
iprop: no visible global function definition for ‘qnorm’
irates: no visible global function definition for ‘qnorm’
irates.ratio: no visible global function definition for ‘qnorm’
Undefined global functions or variables:
  gray lines plot qnorm
Consider adding
  importFrom("grDevices", "gray")
  importFrom("graphics", "lines", "plot")
  importFrom("stats", "qnorm")
to your NAMESPACE file.
Rd file 'CIFplot.Rd':
  \usage lines wider than 90 characters:
     CIFplot(x, event.code = NULL, covar.code = NULL, indiv.times = NULL, indiv.events = NULL, indiv.covar = NULL, 

Rd file 'irates.Rd':
  \usage lines wider than 90 characters:
     irates(data, time.code = NULL, no.event.code = NULL, no.event.lab = NULL, event.lab = NULL, covar.lab = NULL, 

Rd file 'plot.irates.Rd':
  \usage lines wider than 90 characters:
     plot(x, covar.code = NULL, full.sample = FALSE, n.row = 1, viewport.size = list(w = 3.5, h = 2.5), 
     box.size = list(w = NULL, h = NULL), dist = 0.5, irates.vbw = NULL, arrow.maxlwd = 10, display.digits = 2, cex = 0.9, show.values = TRU ... [TRUNCATED]

Rd file 'print.iprop.Rd':
  \usage lines wider than 90 characters:
     print(x, event.code = NULL, covar.code = NULL, full.sample = FALSE, display.digits = 4, ...)

Rd file 'print.irates.Rd':
  \usage lines wider than 90 characters:
     print(x, event.code = NULL, covar.code = NULL, full.sample = FALSE, display.digits = 4, ...)

These lines will be truncated in the PDF manual.
'library' or 'require' call to ‘hypergeo’ which was already attached by Depends.
  Please remove these calls from your code.
momentCompound: no visible global function definition for ‘integrate’
pgfIhypergeometric: no visible global function definition for ‘uniroot’
pgfIhyperpoisson: no visible global function definition for ‘uniroot’
pgfIkattitypeh1: no visible global function definition for ‘uniroot’
pgfIkattitypeh2: no visible global function definition for ‘uniroot’
pgfIneymantypeb: no visible global function definition for ‘uniroot’
pgfIneymantypec: no visible global function definition for ‘uniroot’
pgfIpoissonlindley: no visible global function definition for ‘uniroot’
pgfIthomas: no visible global function definition for ‘uniroot’
pgfIwaring: no visible global function definition for ‘uniroot’
pgfIyule: no visible global function definition for ‘uniroot’
rCompound: no visible global function definition for ‘runif’
Undefined global functions or variables:
  integrate runif uniroot
Consider adding
  importFrom("stats", "integrate", "runif", "uniroot")
to your NAMESPACE file.
Found the following significant warnings:
  Utility.c:162:8: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
  Utility.c:187:8: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
  Utility.c:211:8: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
  Utility.c:392:8: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
  Utility.c:417:8: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
  Utility.c:442:8: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
See ‘/data/gannet/ripley/R/packages/tests-clang/CompRandFld.Rcheck/00install.out’ for details.
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    libs   5.2Mb
File ‘ConConPiWiFun/libs/ConConPiWiFun.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘concreg/libs/concreg.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘graphics’
  All declared Imports should be used.
K1.norm: no visible global function definition for ‘dnorm’
K1.norm: no visible global function definition for ‘pnorm’
K1.t3: no visible global function definition for ‘pt’
K2.norm: no visible global function definition for ‘dnorm’
K2.norm: no visible global function definition for ‘pnorm’
K2.t3: no visible global function definition for ‘pt’
Undefined global functions or variables:
  dnorm pnorm pt
Consider adding
  importFrom("stats", "dnorm", "pnorm", "pt")
to your NAMESPACE file.
File ‘conditions/libs/conditions.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Package in Depends field not imported from: ‘evd’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Rd file 'condmixt.fit.Rd':
  \usage lines wider than 90 characters:
     condhparetomixt.dirac.fit.tailpen(theta,h,m,x,y,lambda=0,w=0.2,beta=50,mu=0.2,sigma=0.2, ...)

Rd file 'condmixt.train.Rd':
  \usage lines wider than 90 characters:
     condhparetomixt.train.tailpen(h,m,x,y,lambda=0,w=0.2,beta=50,mu=0.2,sigma=0.2, nstart = 1, ...)
     condhparetomixt.dirac.train.tailpen(h,m,x,y,lambda=0,w=0.2,beta=50,mu=0.2,sigma=0.2, nstart = 1, ...)

These lines will be truncated in the PDF manual.
File ‘condmixt/libs/condmixt.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  9.4Mb
  sub-directories of 1Mb or more:
    data      6.5Mb
    extdata   2.6Mb
File ‘condSURV/libs/condSURV.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘constrainedKriging/libs/constrainedKriging.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 71.8Mb
  sub-directories of 1Mb or more:
    libs  70.8Mb
File ‘contoureR/libs/contoureR.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘Hmisc’ ‘MASS’ ‘geepack’
  All declared Imports should be used.
maCooperative: no visible global function definition for ‘points’
maCooperative: no visible global function definition for ‘legend’
maPessimistic: no visible global function definition for ‘combn’
maRules: no visible global function definition for ‘capture.output’
mstCooperative: no visible global function definition for ‘points’
mstCooperative: no visible global function definition for ‘legend’
mstOptimistic: no visible global function definition for ‘combn’
mstPessimistic: no visible global function definition for ‘combn’
mstRules: no visible global function definition for ‘capture.output’
plotCoreSet: no visible global function definition for ‘points’
plotCoreSet: no visible global function definition for ‘polygon’
plotImputationSet: no visible global function definition for ‘par’
plotImputationSet: no visible global function definition for ‘plot’
plotImputationSet: no visible global function definition for ‘box’
plotImputationSet: no visible global function definition for ‘polygon’
plotImputationSet: no visible global function definition for ‘text’
shapleyValue: no visible global function definition for ‘combn’
Undefined global functions or variables:
  box capture.output combn legend par plot points polygon text
Consider adding
  importFrom("graphics", "box", "legend", "par", "plot", "points",
             "polygon", "text")
  importFrom("utils", "capture.output", "combn")
to your NAMESPACE file.
installed size is 10.8Mb
  sub-directories of 1Mb or more:
    R     2.1Mb
    doc   6.5Mb
Found the following apparent S3 methods exported but not registered:
  predict.copreg
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
density_conditional: no visible global function definition for ‘ppois’
density_joint: no visible global function definition for ‘ppois’
dgam: no visible global function definition for ‘dgamma’
dpolicy_loss: no visible global function definition for ‘ppois’
dztp: no visible global function definition for ‘dpois’
epolicy_loss: no visible global function definition for ‘integrate’
mle_joint: no visible global function definition for ‘optim’
mle_marginal: no visible global function definition for ‘glm’
mle_marginal: no visible global function definition for ‘Gamma’
mle_marginal: no visible global function definition for ‘vcov’
mle_marginal: no visible global function definition for ‘poisson’
mle_marginal: no visible global function definition for ‘coef’
mle_marginal: no visible global function definition for ‘ppois’
mle_marginal: no visible global function definition for ‘optim’
pgam: no visible global function definition for ‘pgamma’
ppolicy_loss: no visible global function definition for ‘integrate’
pztp: no visible global function definition for ‘ppois’
qpolicy_loss: no visible global function definition for ‘uniroot’
rgam: no visible global function definition for ‘rgamma’
vuongtest: no visible global function definition for ‘sd’
ztp.glm: no visible global function definition for ‘coef’
ztp.glm: no visible global function definition for ‘glm’
ztp.glm: no visible binding for global variable ‘poisson’
ztp.glm: no visible global function definition for ‘optim’
Undefined global functions or variables:
  Gamma coef dgamma dpois glm integrate optim pgamma poisson ppois
  rgamma sd uniroot vcov
Consider adding
  importFrom("stats", "Gamma", "coef", "dgamma", "dpois", "glm",
             "integrate", "optim", "pgamma", "poisson", "ppois",
             "rgamma", "sd", "uniroot", "vcov")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘mcc’
  All declared Imports should be used.
File ‘cord/libs/cord.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
compute.llh: no visible global function definition for ‘dnorm’
compute.u.hat.simple: no visible global function definition for ‘dnorm’
fit.CLM.1u.simple.start: no visible global function definition for
  ‘kmeans’
fit.CLMM.simple.start: no visible global function definition for
  ‘kmeans’
fit.CLMM.simple.start.NA: no visible global function definition for
  ‘kmeans’
Undefined global functions or variables:
  dnorm kmeans
Consider adding
  importFrom("stats", "dnorm", "kmeans")
to your NAMESPACE file.
Running ‘testthat.R’ [7s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(CornerstoneR)
  > 
  > test_check("CornerstoneR")
  ── 1. Failure: Classification (@test_randomForest.R#57)  ───────────────────────
  res$statistics[-9, 2] not equal to data.table(...).
  Column 'Value': 1 string mismatch
  
  OMP: Warning #96: Cannot form a team with 5 threads, using 2 instead.
  OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
  ── 2. Failure: Regression (@test_randomForest.R#88)  ───────────────────────────
  res$statistics[-10, 2] not equal to data.table(...).
  Column 'Value': 2 string mismatches
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 73 SKIPPED: 0 FAILED: 2
  1. Failure: Classification (@test_randomForest.R#57) 
  2. Failure: Regression (@test_randomForest.R#88) 
  
  Error: testthat unit tests failed
  Execution halted
Namespaces in Imports field not imported from:
  ‘profr’ ‘xtable’
  All declared Imports should be used.
CBData: no visible global function definition for ‘aggregate’
CMData: no visible global function definition for ‘aggregate’
GEE.trend.test: no visible binding for global variable ‘binomial’
GEE.trend.test: no visible global function definition for ‘pnorm’
RS.trend.test: no visible global function definition for ‘pnorm’
SO.mc.est: no visible global function definition for ‘xtabs’
SO.trend.test : boot.LRT.fun: no visible global function definition for
  ‘aggregate’
jointprobs: no visible global function definition for ‘xtabs’
mc.test.chisq.CBData: no visible global function definition for
  ‘pchisq’
mc.test.chisq.CMData : get.T: no visible global function definition for
  ‘weighted.mean’
mc.test.chisq.CMData: no visible global function definition for
  ‘pchisq’
mg.DirMult : <anonymous>: no visible global function definition for
  ‘rmultinom’
mg.LogitNorm : <anonymous>: no visible global function definition for
  ‘rmultinom’
mg.MixMult : <anonymous>: no visible global function definition for
  ‘rmultinom’
mg.Resample: no visible global function definition for ‘rmultinom’
ran.CBData : ran.gen: no visible global function definition for
  ‘rmultinom’
read.CBData: no visible global function definition for ‘read.table’
read.CBData: no visible global function definition for ‘aggregate’
read.CMData: no visible global function definition for ‘read.table’
trend.test : boot.LRT.fun: no visible global function definition for
  ‘aggregate’
unwrap.CMData: no visible global function definition for ‘reshape’
Undefined global functions or variables:
  aggregate binomial pchisq pnorm read.table reshape rmultinom
  weighted.mean xtabs
Consider adding
  importFrom("stats", "aggregate", "binomial", "pchisq", "pnorm",
             "reshape", "rmultinom", "weighted.mean", "xtabs")
  importFrom("utils", "read.table")
to your NAMESPACE file.
File ‘CorrBin/libs/CorrBin.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 31.4Mb
  sub-directories of 1Mb or more:
    libs  31.0Mb
Namespace in Imports field not imported from: ‘xtable’
  All declared Imports should be used.
Package in Depends field not imported from: ‘calibrate’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
correlogram: no visible global function definition for ‘par’
correlogram: no visible global function definition for ‘plot’
correlogram: no visible global function definition for ‘points’
correlogram: no visible global function definition for ‘textxy’
correlogram: no visible global function definition for ‘arrows’
correlogram: no visible global function definition for ‘circle’
fit_angles: no visible global function definition for ‘runif’
fit_angles: no visible global function definition for ‘nlminb’
linangplot: no visible global function definition for ‘cor’
linangplot: no visible global function definition for ‘rad2degree’
linangplot: no visible global function definition for ‘ginv’
linangplot: no visible global function definition for ‘par’
linangplot: no visible global function definition for ‘plot’
linangplot: no visible global function definition for ‘calibrate’
linangplot: no visible global function definition for ‘var’
pfa: no visible global function definition for ‘cor’
Undefined global functions or variables:
  arrows calibrate circle cor ginv nlminb par plot points rad2degree
  runif textxy var
Consider adding
  importFrom("graphics", "arrows", "par", "plot", "points")
  importFrom("stats", "cor", "nlminb", "runif", "var")
to your NAMESPACE file.
installed size is  7.0Mb
  sub-directories of 1Mb or more:
    doc   6.9Mb
GA_search : subset_score: no visible global function definition for
  ‘combn’
choose_lambda : subset_score: no visible global function definition for
  ‘combn’
cond.fyx: no visible global function definition for ‘var’
cond.fyx: no visible global function definition for ‘cor’
diff_gen_PPI: no visible global function definition for ‘cov’
diff_gen_PPI: no visible global function definition for ‘sd’
f.test: no visible binding for global variable ‘var’
get_quantiles : node_edge: no visible global function definition for
  ‘combn’
score_scaling: no visible global function definition for ‘hist’
score_scaling: no visible global function definition for ‘sd’
Undefined global functions or variables:
  combn cor cov hist sd var
Consider adding
  importFrom("graphics", "hist")
  importFrom("stats", "cor", "cov", "sd", "var")
  importFrom("utils", "combn")
to your NAMESPACE file.
cosinor.lm: no visible binding for global variable ‘na.omit’
cosinor.lm: no visible global function definition for ‘terms’
cosinor.lm: no visible global function definition for ‘as.formula’
cosinor.lm: no visible global function definition for ‘lm’
cosinor_analyzer: no visible binding for global variable ‘vitamind’
cosinor_analyzer : <anonymous>: no visible global function definition
  for ‘as.formula’
ggplot.cosinor.lm: no visible global function definition for ‘predict’
predict.cosinor.lm: no visible global function definition for ‘fitted’
predict.cosinor.lm: no visible global function definition for ‘predict’
simulate_cosinor: no visible global function definition for ‘runif’
simulate_cosinor: no visible global function definition for ‘rbinom’
simulate_cosinor: no visible global function definition for ‘rnorm’
summary.cosinor.lm: no visible global function definition for ‘vcov’
summary.cosinor.lm: no visible global function definition for ‘qnorm’
summary.cosinor.lm: no visible global function definition for ‘pnorm’
test_cosinor: no visible global function definition for ‘pchisq’
test_cosinor: no visible global function definition for ‘pnorm’
Undefined global functions or variables:
  as.formula fitted lm na.omit pchisq pnorm predict qnorm rbinom rnorm
  runif terms vcov vitamind
Consider adding
  importFrom("stats", "as.formula", "fitted", "lm", "na.omit", "pchisq",
             "pnorm", "predict", "qnorm", "rbinom", "rnorm", "runif",
             "terms", "vcov")
to your NAMESPACE file.
Packages in Depends field not imported from:
  ‘Rglpk’ ‘glmnet’ ‘parallel’ ‘quadprog’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Namespace in Imports field not imported from: ‘jpeg’
  All declared Imports should be used.
installed size is  8.2Mb
  sub-directories of 1Mb or more:
    doc    1.9Mb
    libs   5.3Mb
Namespace in Imports field not imported from: ‘maps’
  All declared Imports should be used.
File ‘COUSCOus/libs/COUSCOus.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  9.7Mb
  sub-directories of 1Mb or more:
    libs   9.1Mb
Namespace in Imports field not imported from: ‘gstat’
  All declared Imports should be used.
File ‘covBM/libs/covBM.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘colourpicker’ ‘dplyr’ ‘markdown’ ‘shinyjs’ ‘tidyr’
  All declared Imports should be used.
'library' or 'require' calls to packages already attached by Depends:
  ‘Matrix’ ‘mlogit’ ‘poLCA’
  Please remove these calls from your code.
Packages in Depends field not imported from:
  ‘Matrix’ ‘mlogit’ ‘poLCA’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
covLCA: no visible global function definition for ‘model.response’
covLCA: no visible global function definition for ‘model.frame’
covLCA: no visible global function definition for ‘model.matrix’
covLCA: no visible global function definition for ‘rnorm’
covLCA: no visible global function definition for ‘flush.console’
covLCA: no visible global function definition for ‘ginv’
covLCA.initialAlphaGamma: no visible global function definition for
  ‘as.formula’
covLCA.initialAlphaGamma: no visible global function definition for
  ‘mlogit.data’
covLCA.initialAlphaGamma: no visible global function definition for
  ‘mlogit’
covLCA.initialBeta: no visible global function definition for
  ‘as.formula’
covLCA.initialBeta: no visible global function definition for ‘poLCA’
covLCA.initialBeta: no visible global function definition for
  ‘mlogit.data’
covLCA.initialBeta: no visible global function definition for ‘mlogit’
covLCA.paramVariance: no visible global function definition for ‘ginv’
covLCA.varianceFirst: no visible global function definition for ‘bdiag’
Undefined global functions or variables:
  as.formula bdiag flush.console ginv mlogit mlogit.data model.frame
  model.matrix model.response poLCA rnorm
Consider adding
  importFrom("stats", "as.formula", "model.frame", "model.matrix",
             "model.response", "rnorm")
  importFrom("utils", "flush.console")
to your NAMESPACE file.
Found the following apparent S3 methods exported but not registered:
  predict.lars.en predict.lars.glm
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
calcz02: no visible global function definition for ‘coxph’
calcz02: no visible global function definition for ‘residuals’
covTest: no visible global function definition for ‘Surv’
covTest: no visible global function definition for ‘predict’
covTest: no visible global function definition for ‘update’
covTest: no visible global function definition for ‘lsfit’
covTest: no visible global function definition for ‘pexp’
covTest: no visible global function definition for ‘pf’
lars.en: no visible binding for global variable ‘var’
predict.lars.en: no visible global function definition for ‘predict’
Undefined global functions or variables:
  Surv coxph lsfit pexp pf predict residuals update var
Consider adding
  importFrom("stats", "lsfit", "pexp", "pf", "predict", "residuals",
             "update", "var")
to your NAMESPACE file.
Rd file 'lars.glm.Rd':
  \usage lines wider than 90 characters:
     lars.glm(x, y, status = NULL, family = c("binomial", "cox"), standardize=TRUE,frac.arclength=.1)

These lines will be truncated in the PDF manual.
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    libs   5.4Mb
Namespaces in Imports field not imported from:
  ‘ggplot2’ ‘misc3d’
  All declared Imports should be used.
'library' or 'require' calls in package code:
  ‘parallel’ ‘snowfall’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
  ‘Matrix’ ‘prodlim’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
CoxBoost: no visible global function definition for ‘Matrix’
CoxBoost: no visible binding for global variable ‘sd’
CoxBoost: no visible global function definition for ‘predict’
cv.CoxBoost : eval.fold: no visible global function definition for
  ‘predict’
cv.CoxBoost: no visible global function definition for ‘mclapply’
cv.CoxBoost: no visible binding for global variable ‘sd’
estimPVal: no visible global function definition for ‘mclapply’
iCoxBoost: no visible global function definition for ‘terms’
iCoxBoost: no visible global function definition for ‘model.response’
iCoxBoost: no visible global function definition for ‘model.frame’
iCoxBoost: no visible global function definition for ‘model.matrix’
iCoxBoost: no visible global function definition for ‘Matrix’
plot.CoxBoost: no visible global function definition for ‘plot’
plot.CoxBoost: no visible global function definition for ‘lines’
plot.CoxBoost: no visible global function definition for ‘text’
predict.iCoxBoost: no visible global function definition for
  ‘model.response’
predict.iCoxBoost: no visible global function definition for
  ‘model.frame’
predict.iCoxBoost: no visible global function definition for
  ‘model.matrix’
Undefined global functions or variables:
  Matrix lines mclapply model.frame model.matrix model.response plot
  predict sd terms text
Consider adding
  importFrom("graphics", "lines", "plot", "text")
  importFrom("stats", "model.frame", "model.matrix", "model.response",
             "predict", "sd", "terms")
to your NAMESPACE file.
File ‘CoxBoost/libs/CoxBoost.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
coxaalen: no visible global function definition for ‘terms’
coxaalen: no visible global function definition for ‘model.matrix’
coxaalen: no visible binding for global variable ‘frame’
coxaalen: no visible global function definition for ‘update.formula’
coxaalen: no visible global function definition for ‘capture.output’
coxdual: no visible global function definition for ‘terms’
coxdual: no visible global function definition for ‘model.matrix’
coxdual: no visible binding for global variable ‘frame’
coxdual: no visible global function definition for ‘update.formula’
coxdual: no visible global function definition for ‘as.formula’
coxdual: no visible global function definition for ‘capture.output’
frame.assign: no visible global function definition for ‘model.matrix’
linapprox: no visible global function definition for ‘approx’
print.coxinterval: no visible global function definition for ‘pchisq’
print.summary.coxinterval : f: no visible global function definition
  for ‘printCoefmat’
step2stepfun : f: no visible global function definition for ‘stepfun’
summary.coxinterval : f: no visible global function definition for
  ‘pchisq’
summary.coxinterval : f: no visible global function definition for
  ‘qnorm’
Undefined global functions or variables:
  approx as.formula capture.output frame model.matrix pchisq
  printCoefmat qnorm stepfun terms update.formula
Consider adding
  importFrom("graphics", "frame")
  importFrom("stats", "approx", "as.formula", "model.matrix", "pchisq",
             "printCoefmat", "qnorm", "stepfun", "terms",
             "update.formula")
  importFrom("utils", "capture.output")
to your NAMESPACE file.
File ‘coxinterval/libs/coxinterval.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    libs   6.0Mb
File ‘CoxPlus/libs/CoxPlus.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
comp.graph: no visible global function definition for ‘qnorm’
comp.graph: no visible global function definition for ‘plot’
comp.graph: no visible global function definition for ‘polygon’
comp.graph: no visible global function definition for ‘lines’
cox.ridge: no visible global function definition for ‘terms’
cox.ridge: no visible global function definition for ‘model.extract’
cox.ridge: no visible global function definition for ‘model.matrix’
cox.ridge: no visible binding for global variable ‘hat’
Undefined global functions or variables:
  hat lines model.extract model.matrix plot polygon qnorm terms
Consider adding
  importFrom("graphics", "lines", "plot", "polygon")
  importFrom("stats", "hat", "model.extract", "model.matrix", "qnorm",
             "terms")
to your NAMESPACE file.
Package in Depends field not imported from: ‘survival’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
coxr: no visible global function definition for ‘model.extract’
coxr: no visible global function definition for ‘model.matrix’
coxr.draw: no visible global function definition for ‘plot’
coxr.draw: no visible global function definition for ‘lines’
coxr.draw: no visible global function definition for ‘points’
coxr.fit: no visible global function definition for ‘quantile’
gen_data: no visible global function definition for ‘rnorm’
gen_data: no visible global function definition for ‘rexp’
plot.coxr: no visible global function definition for ‘quantile’
plot.coxr: no visible global function definition for ‘par’
plot.coxr: no visible global function definition for ‘mtext’
plot.coxr: no visible global function definition for ‘title’
plot.coxr: no visible global function definition for ‘split.screen’
plot.coxr: no visible global function definition for ‘screen’
plot.coxr: no visible global function definition for ‘close.screen’
print.coxr: no visible global function definition for ‘pnorm’
print.coxr: no visible global function definition for ‘pchisq’
Undefined global functions or variables:
  close.screen lines model.extract model.matrix mtext par pchisq plot
  pnorm points quantile rexp rnorm screen split.screen title
Consider adding
  importFrom("graphics", "close.screen", "lines", "mtext", "par", "plot",
             "points", "screen", "split.screen", "title")
  importFrom("stats", "model.extract", "model.matrix", "pchisq", "pnorm",
             "quantile", "rexp", "rnorm")
to your NAMESPACE file.
File ‘coxrobust/libs/coxrobust.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
CumInt : fn: no visible global function definition for ‘integrate’
RND0: no visible global function definition for ‘runif’
coxseiInt: no visible global function definition for ‘approxfun’
coxseiInt : js: no visible global function definition for ‘tail’
coxseiest: no visible global function definition for ‘approxfun’
coxseiest : loglik : ll: no visible global function definition for
  ‘tail’
coxseiest: no visible global function definition for ‘optim’
coxseiest2: no visible global function definition for ‘approxfun’
coxseiest2: no visible global function definition for ‘optim’
coxseiest3: no visible global function definition for ‘approxfun’
coxseiest3: no visible global function definition for ‘optim’
coxseiexp: no visible global function definition for ‘approxfun’
coxseiexp: no visible global function definition for ‘optim’
coxseiexp : js: no visible global function definition for ‘tail’
coxseiexp: no visible global function definition for ‘pnorm’
coxseiexp: no visible global function definition for ‘stepfun’
coxseifit.ex: no visible global function definition for ‘approxfun’
coxseifit.ex: no visible global function definition for ‘optim’
coxseifit.ex : js: no visible global function definition for ‘tail’
coxseifit.ex: no visible global function definition for ‘pnorm’
coxseifit.ex: no visible global function definition for ‘stepfun’
coxseisim : int.at.lasttm: no visible global function definition for
  ‘tail’
plot.coxsei: no visible global function definition for ‘plot’
print.summary.coxsei: no visible global function definition for
  ‘printCoefmat’
summary.coxsei: no visible global function definition for ‘coef’
Undefined global functions or variables:
  approxfun coef integrate optim plot pnorm printCoefmat runif stepfun
  tail
Consider adding
  importFrom("graphics", "plot")
  importFrom("stats", "approxfun", "coef", "integrate", "optim", "pnorm",
             "printCoefmat", "runif", "stepfun")
  importFrom("utils", "tail")
to your NAMESPACE file.
File ‘coxsei/libs/coxsei.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc    1.4Mb
    libs   3.4Mb
installed size is 39.4Mb
  sub-directories of 1Mb or more:
    libs  39.2Mb
src/Makevars: incorrect macro SHLIB_OPENMP_CFLAGS included in PKG_CXXFLAGS
  src/Makevars: SHLIB_OPENMP_CFLAGS is included in PKG_LIBS but linking is by C++
  src/Makevars.win: incorrect macro SHLIB_OPENMP_CFLAGS included in PKG_CXXFLAGS
  src/Makevars.win: SHLIB_OPENMP_CFLAGS is included in PKG_LIBS but linking is by C++
Use of these macros is discussed in sect 1.2.1.1 of ‘Writing R
Extensions’. The macros for different languages may differ so the
matching macro must be used in PKG_CXXFLAGS (etc) and match that used
in PKG_LIBS (except for Fortran: see the manual).
File ‘cpgen/libs/cpgen.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘cpm/libs/cpm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  8.6Mb
  sub-directories of 1Mb or more:
    libs   8.4Mb
QR.cd: no visible global function definition for ‘quantile’
QR.lasso.cd: no visible global function definition for ‘quantile’
cqr.cd: no visible global function definition for ‘quantile’
cqr.lasso.cd: no visible global function definition for ‘quantile’
cqr.lasso.mm: no visible global function definition for ‘quantile’
cqr.mm: no visible global function definition for ‘quantile’
Undefined global functions or variables:
  quantile
Consider adding
  importFrom("stats", "quantile")
to your NAMESPACE file.
File ‘cqrReg/libs/cqrReg.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    doc   6.5Mb
Note: found 11 marked Latin-1 strings
  Note: found 57 marked UTF-8 strings
installed size is  6.9Mb
  sub-directories of 1Mb or more:
    libs   6.3Mb
Namespaces in Imports field not imported from:
  ‘gdistance’ ‘raster’
  All declared Imports should be used.
File ‘creditr/libs/creditr.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘credule/libs/credule.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
makeX_eset: no visible global function definition for ‘model.matrix’
normFit: no visible binding for global variable ‘lm’
normFit: no visible binding for global variable ‘sd’
normFit: no visible global function definition for ‘lm’
normPred: no visible binding for global variable ‘predict’
normPred: no visible global function definition for ‘predict’
normPred: no visible binding for global variable ‘median’
plot.nFit: no visible global function definition for ‘par’
plot.nFit: no visible global function definition for ‘barplot’
plot.nFit: no visible global function definition for ‘legend’
show_nfit: no visible global function definition for ‘anova’
show_nfit: no visible global function definition for ‘residuals’
show_nfit: no visible global function definition for ‘fitted’
standardsFit: no visible binding for global variable ‘lm’
standardsFit: no visible global function definition for ‘resid’
standardsFit: no visible global function definition for
  ‘compareVersion’
standardsPred: no visible global function definition for ‘predict’
makeX,ExpressionSet-character: no visible global function definition
  for ‘model.matrix’
plot,nFit: no visible global function definition for ‘par’
plot,nFit: no visible global function definition for ‘barplot’
plot,nFit: no visible global function definition for ‘legend’
show,nFit: no visible global function definition for ‘anova’
show,nFit: no visible global function definition for ‘residuals’
show,nFit: no visible global function definition for ‘fitted’
Undefined global functions or variables:
  anova barplot compareVersion fitted legend lm median model.matrix par
  predict resid residuals sd
Consider adding
  importFrom("graphics", "barplot", "legend", "par")
  importFrom("stats", "anova", "fitted", "lm", "median", "model.matrix",
             "predict", "resid", "residuals", "sd")
  importFrom("utils", "compareVersion")
to your NAMESPACE file.
'library' or 'require' call to ‘RCurl’ which was already attached by Depends.
  Please remove these calls from your code.
Packages in Depends field not imported from:
  ‘RCurl’ ‘chron’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
collateDaily: no visible global function definition for ‘read.table’
collateDaily: no visible global function definition for ‘write.table’
collateHourly: no visible global function definition for ‘read.table’
collateHourly: no visible global function definition for ‘write.table’
downloadCRN: no visible global function definition for ‘download.file’
getUrlsCRN: no visible global function definition for ‘getURL’
writeDataset: no visible global function definition for ‘read.table’
writeDataset: no visible global function definition for ‘write.table’
Undefined global functions or variables:
  download.file getURL read.table write.table
Consider adding
  importFrom("utils", "download.file", "read.table", "write.table")
to your NAMESPACE file.
Rd file 'downloadCRN.Rd':
  \usage lines wider than 90 characters:
     downloadCRN(url = CRN.DAILY.URL, directory = DAILY_DIR, years = seq(from = 2000, to = 2011, by = 1))

These lines will be truncated in the PDF manual.
Namespace in Imports field not imported from: ‘glue’
  All declared Imports should be used.
get.plan: no visible global function definition for ‘menu’
Undefined global functions or variables:
  menu
Consider adding
  importFrom("utils", "menu")
to your NAMESPACE file.
crossmatchtest: no visible global function definition for ‘pnorm’
Undefined global functions or variables:
  pnorm
Consider adding
  importFrom("stats", "pnorm")
to your NAMESPACE file.
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘r6extended’
  All declared Imports should be used.
crrp: no visible global function definition for ‘approx’
gcrrp: no visible global function definition for ‘approx’
Undefined global functions or variables:
  approx
Consider adding
  importFrom("stats", "approx")
to your NAMESPACE file.
File ‘crrp/libs/crrp.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
crrc: no visible binding for global variable ‘na.omit’
crrs: no visible binding for global variable ‘na.omit’
mycrr: no visible binding for global variable ‘na.omit’
mycrr.test: no visible binding for global variable ‘na.omit’
print.crrs: no visible global function definition for ‘pnorm’
psh.test: no visible global function definition for ‘pchisq’
Undefined global functions or variables:
  na.omit pchisq pnorm
Consider adding
  importFrom("stats", "na.omit", "pchisq", "pnorm")
to your NAMESPACE file.
File ‘crrSC/libs/crrSC.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
crrstep : crr.makecov1: no visible global function definition for
  ‘model.matrix’
crrstep : crr.dropterm: no visible global function definition for
  ‘terms’
crrstep : crr.dropterm: no visible global function definition for
  ‘as.formula’
crrstep : crr.addterm: no visible global function definition for
  ‘terms’
crrstep : crr.addterm: no visible global function definition for
  ‘as.formula’
crrstep: no visible global function definition for ‘as.formula’
crrstep: no visible global function definition for ‘terms’
crrstep: no visible global function definition for ‘model.frame’
crrstep: no visible binding for global variable ‘na.pass’
crrstep: no visible global function definition for ‘update’
crrstep: no visible global function definition for ‘drop.terms’
Undefined global functions or variables:
  as.formula drop.terms model.frame model.matrix na.pass terms update
Consider adding
  importFrom("stats", "as.formula", "drop.terms", "model.frame",
             "model.matrix", "na.pass", "terms", "update")
to your NAMESPACE file.
File ‘crskdiag/libs/crskdiag.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 23.7Mb
  sub-directories of 1Mb or more:
    libs  22.0Mb
Namespace in Imports field not imported from: ‘keyring’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘qte’
  All declared Imports should be used.
installed size is  7.9Mb
  sub-directories of 1Mb or more:
    shp   7.8Mb
installed size is 11.0Mb
  sub-directories of 1Mb or more:
    data  10.9Mb
Note: found 59670 marked Latin-1 strings
  Note: found 16 marked UTF-8 strings
pielou: no visible global function definition for ‘runif’
Undefined global functions or variables:
  runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘tea’
  All declared Imports should be used.
installed size is 102.3Mb
  sub-directories of 1Mb or more:
    data   1.8Mb
    doc    4.0Mb
    libs  95.3Mb
src/Makevars: SHLIB_OPENMP_CFLAGS is included in PKG_LIBS but linking is by C++
Use of these macros is discussed in sect 1.2.1.1 of ‘Writing R
Extensions’. The macros for different languages may differ so the
matching macro must be used in PKG_CXXFLAGS (etc) and match that used
in PKG_LIBS (except for Fortran: see the manual).
File ‘CuCubes/libs/CuCubes.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘pspearman’
  All declared Imports should be used.
'library' or 'require' call to ‘lars’ which was already attached by Depends.
  Please remove these calls from your code.
Found the following apparent S3 methods exported but not registered:
  plot.aCGHsegmented
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
jumpoints : seg.lm.fit0: no visible global function definition for
  ‘lm.fit’
jumpoints : seg.lm.fit0: no visible global function definition for
  ‘coef’
jumpoints: no visible global function definition for ‘quantile’
jumpoints: no visible global function definition for ‘coef’
plot.aCGHsegmented: no visible global function definition for ‘plot’
plot.aCGHsegmented: no visible global function definition for ‘grey’
plot.aCGHsegmented: no visible global function definition for ‘abline’
plot.aCGHsegmented: no visible global function definition for ‘points’
plot.aCGHsegmented: no visible global function definition for
  ‘segments’
plot.aCGHsegmented: no visible global function definition for ‘par’
Undefined global functions or variables:
  abline coef grey lm.fit par plot points quantile segments
Consider adding
  importFrom("grDevices", "grey")
  importFrom("graphics", "abline", "par", "plot", "points", "segments")
  importFrom("stats", "coef", "lm.fit", "quantile")
to your NAMESPACE file.
Package unavailable to check Rd xrefs: ‘tilingArray’
File ‘curl/libs/curl.so’:
  Found non-API call to R: ‘R_new_custom_connection’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
cci.nostrat: no visible global function definition for ‘quantile’
cci.nostrat: no visible global function definition for ‘plot’
cci.nostrat: no visible global function definition for ‘axis’
cci.nostrat: no visible global function definition for ‘lines’
cci.nostrat: no visible global function definition for ‘legend’
cci.strat: no visible global function definition for ‘plot’
cci.strat: no visible global function definition for ‘axis’
cci.strat: no visible global function definition for ‘lines’
cci.strat: no visible global function definition for ‘legend’
clfs.nostrat: no visible global function definition for ‘quantile’
clfs.nostrat: no visible global function definition for ‘plot’
clfs.nostrat: no visible global function definition for ‘axis’
clfs.nostrat: no visible global function definition for ‘lines’
clfs.nostrat: no visible global function definition for ‘legend’
clfs.strat: no visible global function definition for ‘plot’
clfs.strat: no visible global function definition for ‘axis’
clfs.strat: no visible global function definition for ‘lines’
clfs.strat: no visible global function definition for ‘legend’
pvals.2cat: no visible global function definition for ‘pchisq’
pvals.cat: no visible global function definition for ‘pchisq’
Undefined global functions or variables:
  axis legend lines pchisq plot quantile
Consider adding
  importFrom("graphics", "axis", "legend", "lines", "plot")
  importFrom("stats", "pchisq", "quantile")
to your NAMESPACE file.
File ‘cusp/libs/cusp.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘rlang’ ‘tidyselect’
  All declared Imports should be used.
File ‘CUSUMdesign/libs/CUSUMdesign.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Cut: no visible global function definition for ‘cor’
MissSimulation: no visible global function definition for ‘rbinom’
cutoff: no visible global function definition for ‘cor’
Undefined global functions or variables:
  cor rbinom
Consider adding
  importFrom("stats", "cor", "rbinom")
to your NAMESPACE file.
ci.cvAUC: no visible global function definition for ‘qnorm’
ci.pooled.cvAUC: no visible global function definition for ‘qnorm’
Undefined global functions or variables:
  qnorm
Consider adding
  importFrom("stats", "qnorm")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘lattice’
  All declared Imports should be used.
cvimpute.by.wavelet: no visible global function definition for ‘sd’
cvimpute.by.wavelet: no visible global function definition for ‘mad’
cvimpute.image.by.wavelet: no visible global function definition for
  ‘sd’
cvimpute.image.by.wavelet: no visible global function definition for
  ‘mad’
cvwavelet.image.after.impute: no visible global function definition for
  ‘sd’
cvwavelet.image.after.impute: no visible global function definition for
  ‘mad’
Undefined global functions or variables:
  mad sd
Consider adding
  importFrom("stats", "mad", "sd")
to your NAMESPACE file.
File ‘cvxbiclustr/libs/cvxbiclustr.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
create_clustering_problem: no visible global function definition for
  ‘rnorm’
Undefined global functions or variables:
  rnorm
Consider adding
  importFrom("stats", "rnorm")
to your NAMESPACE file.
File ‘cvxclustr/libs/cvxclustr.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  8.9Mb
  sub-directories of 1Mb or more:
    R      1.8Mb
    libs   5.1Mb
.mixgauss_init: no visible global function definition for ‘cov’
.mixgauss_init: no visible global function definition for ‘var’
Undefined global functions or variables:
  cov var
Consider adding
  importFrom("stats", "cov", "var")
to your NAMESPACE file.
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    doc    4.1Mb
    libs   1.1Mb
File ‘cycleRtools/libs/cycleRtools.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 24.9Mb
  sub-directories of 1Mb or more:
    libs  24.1Mb
Package in Depends field not imported from: ‘fda’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
check.for.sequence.endpoint.breaks: no visible global function
  definition for ‘na.omit’
get.breaks.vector: no visible global function definition for ‘na.omit’
get.cycle.breaks: no visible global function definition for ‘na.omit’
get.cycle.counts: no visible global function definition for ‘na.omit’
get.cycle.matrix: no visible global function definition for ‘na.omit’
get.cycle.minimums: no visible global function definition for ‘na.omit’
get.peaks: no visible global function definition for ‘embed’
get.trans: no visible global function definition for
  ‘create.bspline.basis’
get.trans: no visible global function definition for ‘smooth.basis’
get.trans: no visible global function definition for ‘deriv.fd’
get.trans: no visible global function definition for ‘eval.fd’
get.transition.locations: no visible global function definition for
  ‘na.omit’
get.transition.locations.FDiff: no visible global function definition
  for ‘na.omit’
get.window: no visible global function definition for ‘sd’
Undefined global functions or variables:
  create.bspline.basis deriv.fd embed eval.fd na.omit sd smooth.basis
Consider adding
  importFrom("stats", "embed", "na.omit", "sd")
to your NAMESPACE file.
cytoDiv: no visible global function definition for ‘colorRampPalette’
cytoDiv: no visible global function definition for ‘persp’
Undefined global functions or variables:
  colorRampPalette persp
Consider adding
  importFrom("grDevices", "colorRampPalette")
  importFrom("graphics", "persp")
to your NAMESPACE file.
Rd file 'cytoDiv.Rd':
  \usage lines wider than 90 characters:
     cytoDiv(df, x.var="fsc_small", y.var="chl_small", Ncat = 16, Nbit = 16, do.plot=FALSE, ...)
  \examples lines wider than 100 characters:
     rainbow.cols <- colorRampPalette(c("#00007F", "blue", "#007FFF", "cyan", "#7FFF7F", "yellow","#FF7F00", "red", "#7F0000"))
     plot(cleaned.df[,2], cleaned.df[,3], col= densCols(cleaned.df[,2], cleaned.df[,3], colramp = rainbow.cols))

These lines will be truncated in the PDF manual.
Namespaces in Imports field not imported from:
  ‘RColorBrewer’ ‘grDevices’ ‘robustbase’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘titanic’
  All declared Imports should be used.
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    doc   4.5Mb
Namespace in Imports field not imported from: ‘grid’
  All declared Imports should be used.
Package in Depends field not imported from: ‘parallel’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Found the following apparent S3 methods exported but not registered:
  roc.area
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
File ‘Daim/libs/Daim.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘DALY/libs/DALY.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
DAMOCLES_ML: no visible global function definition for ‘flush.console’
DAMOCLES_bootstrap: no visible global function definition for
  ‘cophenetic’
DAMOCLES_bootstrap: no visible global function definition for ‘sd’
DAMOCLES_bootstrap: no visible global function definition for
  ‘quantile’
DAMOCLES_sim: no visible global function definition for ‘na.omit’
DAMOCLES_sim: no visible global function definition for ‘runif’
DAMOCLES_sim: no visible global function definition for ‘lines’
DAMOCLES_sim: no visible global function definition for ‘rnorm’
DAMOCLES_sim: no visible global function definition for ‘dexp’
DAMOCLES_sim: no visible global function definition for ‘dist’
DAMOCLES_simplex: no visible global function definition for
  ‘flush.console’
Undefined global functions or variables:
  cophenetic dexp dist flush.console lines na.omit quantile rnorm runif
  sd
Consider adding
  importFrom("graphics", "lines")
  importFrom("stats", "cophenetic", "dexp", "dist", "na.omit",
             "quantile", "rnorm", "runif", "sd")
  importFrom("utils", "flush.console")
to your NAMESPACE file.
Namespaces in Imports field not imported from:
  ‘plotly’ ‘rgl’
  All declared Imports should be used.
drawAimSpot: no visible global function definition for ‘points’
drawBoard: no visible global function definition for ‘par’
drawBoard: no visible global function definition for ‘plot’
drawBoard: no visible global function definition for ‘points’
drawBoard: no visible global function definition for ‘text’
drawHeatmap: no visible global function definition for ‘heat.colors’
drawHeatmap: no visible global function definition for ‘par’
drawHeatmap: no visible global function definition for ‘image’
drawHeatmap: no visible global function definition for ‘rect’
generalExpScores: no visible global function definition for ‘fft’
simpleExpScores: no visible global function definition for ‘mvfft’
simpleExpScores: no visible global function definition for ‘fft’
Undefined global functions or variables:
  fft heat.colors image mvfft par plot points rect text
Consider adding
  importFrom("grDevices", "heat.colors")
  importFrom("graphics", "image", "par", "plot", "points", "rect",
             "text")
  importFrom("stats", "fft", "mvfft")
to your NAMESPACE file.
File ‘darts/libs/darts.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘curl’
  All declared Imports should be used.
installed size is 15.3Mb
  sub-directories of 1Mb or more:
    java  15.2Mb
Namespace in Imports field not imported from: ‘DatabaseConnectorJars’
  All declared Imports should be used.
installed size is  8.3Mb
  sub-directories of 1Mb or more:
    doc    4.5Mb
    libs   3.5Mb
Namespace in Imports field not imported from: ‘miniUI’
  All declared Imports should be used.
Found the following assignments to the global environment:
File ‘DataEntry/R/Export.R’:
  assign(svalue(edObnm), d, envir = .GlobalEnv)
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    libs   5.7Mb
Package in Depends field not imported from: ‘DBI’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
.onLoad : <anonymous>: no visible global function definition for
  ‘read.table’
.onLoad : <anonymous>: no visible global function definition for
  ‘dbConnect’
.onLoad : <anonymous>: no visible global function definition for
  ‘dbListTables’
.onLoad : <anonymous>: no visible global function definition for
  ‘dbExistsTable’
.onLoad : <anonymous>: no visible global function definition for
  ‘dbReadTable’
.onLoad : <anonymous>: no visible global function definition for
  ‘dbWriteTable’
.onLoad : <anonymous>: no visible global function definition for
  ‘dbDisconnect’
.onLoad : <anonymous>: no visible global function definition for
  ‘dbRemoveTable’
Undefined global functions or variables:
  dbConnect dbDisconnect dbExistsTable dbListTables dbReadTable
  dbRemoveTable dbWriteTable read.table
Consider adding
  importFrom("utils", "read.table")
to your NAMESPACE file.
File ‘datamap/libs/datamap.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 64.8Mb
  sub-directories of 1Mb or more:
    doc    1.2Mb
    libs  62.7Mb
Namespace in Imports field not imported from: ‘RCurl’
  All declared Imports should be used.
browse: no visible global function definition for ‘slot’
browse: no visible global function definition for ‘page’
default.options: no visible binding for global variable ‘object.size’
heat.view: no visible global function definition for ‘head’
heat.view: no visible global function definition for ‘tail’
whos: no visible global function definition for ‘slotNames’
whos : <anonymous> : <anonymous>: no visible global function definition
  for ‘slot’
Undefined global functions or variables:
  head object.size page slot slotNames tail
Consider adding
  importFrom("methods", "slot", "slotNames")
  importFrom("utils", "head", "object.size", "page", "tail")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
'library' or 'require' calls to packages already attached by Depends:
  ‘R.methodsS3’ ‘R.oo’ ‘akima’ ‘graphics’ ‘grid’ ‘lattice’ ‘locfit’
  ‘matlab’ ‘xtable’
  Please remove these calls from your code.
'library' or 'require' call to ‘R.matlab’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
  ‘R.methodsS3’ ‘R.oo’ ‘akima’ ‘grid’ ‘lattice’ ‘locfit’ ‘matlab’
  ‘xtable’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
DAT : DATrun : calch: no visible global function definition for
  ‘preplot’
DAT : DATrun: no visible global function definition for ‘rot90’
DAT : DATrun: no visible global function definition for ‘median’
DAT : DATrun: no visible global function definition for ‘locfit.robust’
DAT : DATrun: no visible global function definition for ‘preplot’
DAT : DATrun: no visible global function definition for ‘dev.new’
DAT : DATrun: no visible global function definition for ‘image’
DAT : DATrun: no visible global function definition for ‘palette’
DAT : DATrun: no visible global function definition for
  ‘colorRampPalette’
DAT : DATrun: no visible global function definition for ‘text’
DAT : DATrun: no visible global function definition for ‘dev.set’
DAT : DATrun: no visible global function definition for ‘locator’
DAT : DATrun: no visible global function definition for ‘graphics.off’
DAT : DATrun: no visible global function definition for ‘pdf’
DAT : DATrun: no visible global function definition for ‘layout’
DAT : DATrun: no visible global function definition for ‘par’
DAT : DATrun: no visible global function definition for ‘plot’
DAT : DATrun: no visible global function definition for ‘frame’
DAT : DATrun: no visible global function definition for ‘lines’
DAT : DATrun: no visible global function definition for ‘dev.off’
DAT : DATrun: no visible global function definition for ‘writeMat’
DAT: no visible binding for global variable ‘DAT.simData’
Undefined global functions or variables:
  DAT.simData colorRampPalette dev.new dev.off dev.set frame
  graphics.off image layout lines locator locfit.robust median palette
  par pdf plot preplot rot90 text writeMat
Consider adding
  importFrom("grDevices", "colorRampPalette", "dev.new", "dev.off",
             "dev.set", "graphics.off", "palette", "pdf")
  importFrom("graphics", "frame", "image", "layout", "lines", "locator",
             "par", "plot", "text")
  importFrom("stats", "median", "preplot")
to your NAMESPACE file.
'library' or 'require' calls to packages already attached by Depends:
  ‘RMySQL’ ‘gWidgets’
  Please remove these calls from your code.
'library' or 'require' call to ‘fdrtool’ which was already attached by Depends.
  Please remove these calls from your code.
avelinkdis: no visible global function definition for ‘sd’
avelinkdis: no visible global function definition for ‘dist’
centdis: no visible global function definition for ‘sd’
centdis: no visible global function definition for ‘dist’
distable: no visible global function definition for ‘write.table’
functionall: no visible global function definition for ‘read.table’
randdis: no visible global function definition for ‘write.table’
valuep: no visible global function definition for ‘write.csv’
Undefined global functions or variables:
  dist read.table sd write.csv write.table
Consider adding
  importFrom("stats", "dist", "sd")
  importFrom("utils", "read.table", "write.csv", "write.table")
to your NAMESPACE file.
Rd file 'distable.Rd':
  \examples lines wider than 100 characters:
     ##before using "b1.txt" data, we need to find "b1.txt" in the data file and  put it in the work space of R

Rd file 'functionall.Rd':
  \examples lines wider than 100 characters:
     ##before running this funtion, we need to find out "b1.txt" data file, and put it into the R workspace.
     functionall(system.file("data","b1.txt",package="DBGSA"),10,avelinkdis,"euclidean","distance",afExp,2000,10,"rand.txt","pvalue.txt")

These lines will be truncated in the PDF manual.
File ‘dblcens/libs/dblcens.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  9.5Mb
  sub-directories of 1Mb or more:
    doc    2.4Mb
    libs   6.8Mb
Namespace in Imports field not imported from: ‘MASS’
  All declared Imports should be used.
.CA.fast2: no visible global function definition for ‘lsfit’
.T2.fast: no visible global function definition for ‘txtProgressBar’
.T2.fast: no visible global function definition for ‘setTxtProgressBar’
.dcemri.bayes: no visible global function definition for ‘median’
.dcemri.bayes: no visible global function definition for ‘sd’
.dcemri.map : posterior: no visible global function definition for
  ‘dnorm’
.dcemri.map : posterior: no visible global function definition for
  ‘dgamma’
.dcemri.map : posterior: no visible global function definition for
  ‘dbeta’
.dcemri.map.single: no visible global function definition for ‘optim’
.dcemri.spline: no visible binding for global variable ‘median’
.dcemri.spline: no visible global function definition for ‘median’
.dcemri.spline.single: no visible binding for global variable
  ‘quantile’
.dcemri.spline.single: no visible binding for global variable ‘median’
.dcemri.spline.single: no visible global function definition for
  ‘median’
.ftm: no visible global function definition for ‘fft’
.ftm: no visible global function definition for ‘matplot’
.ftm: no visible global function definition for ‘legend’
compartmentalModel : <anonymous>: no visible global function definition
  for ‘approx’
convFFT: no visible global function definition for ‘fft’
extractAIF : c.start: no visible global function definition for ‘sd’
extractAIF : c.start: no visible global function definition for ‘cor’
Undefined global functions or variables:
  approx cor dbeta dgamma dnorm fft legend lsfit matplot median optim
  quantile sd setTxtProgressBar txtProgressBar
Consider adding
  importFrom("graphics", "legend", "matplot")
  importFrom("stats", "approx", "cor", "dbeta", "dgamma", "dnorm", "fft",
             "lsfit", "median", "optim", "quantile", "sd")
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
File ‘dcemriS4/libs/dcemriS4.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data   4.1Mb
Packages in Depends field not imported from:
  ‘lattice’ ‘latticeExtra’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Namespaces in Imports field not imported from:
  ‘RColorBrewer’ ‘gridExtra’ ‘latticeExtra’
  All declared Imports should be used.
File ‘DCluster/libs/DCluster.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘CDM’
  All declared Imports should be used.
test.LM: no visible global function definition for ‘lm’
Undefined global functions or variables:
  lm
Consider adding
  importFrom("stats", "lm")
to your NAMESPACE file.
File ‘DDHFm/libs/DDHFm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
getDelimiter: no visible global function definition for ‘read.csv’
setupfile: no visible global function definition for ‘read.csv’
treatPath: no visible global function definition for ‘file_test’
Undefined global functions or variables:
  file_test read.csv
Consider adding
  importFrom("utils", "file_test", "read.csv")
to your NAMESPACE file.
Running ‘testthat.R’ [11s/13s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(ddpcr)
  
  Attaching package: 'ddpcr'
  
  The following object is masked from 'package:stats':
  
      step
  
  > 
  > test_check("ddpcr")
  ── 1. Failure: get_filled_drops works (@test-pnpp_experiment-filled.R#22)  ─────
  get_filled_drops(plate, "A05") not equal to readr::read_csv(file.path(dir, "A05_filled.csv")).
  Incompatible type for column `HEX`: x integer, y numeric
  Incompatible type for column `FAM`: x integer, y numeric
  
  ── 2. Failure: reading v174 works (@test-v174.R#7)  ────────────────────────────
  `expected_data` not equal to plate_data(plate).
  Incompatible type for column `HEX`: x numeric, y integer
  Incompatible type for column `FAM`: x numeric, y integer
  Incompatible type for column `cluster`: x numeric, y integer
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 267 SKIPPED: 0 FAILED: 2
  1. Failure: get_filled_drops works (@test-pnpp_experiment-filled.R#22) 
  2. Failure: reading v174 works (@test-v174.R#7) 
  
  Error: testthat unit tests failed
  Execution halted
installed size is 23.9Mb
  sub-directories of 1Mb or more:
    libs  23.8Mb
Running ‘testthat.R’ [73s/348s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(DeclareDesign)
  Loading required package: randomizr
  Loading required package: fabricatr
  Loading required package: estimatr
  > 
  > test_check("DeclareDesign")
  ── 1. Failure: gam (@test-model.R#247)  ────────────────────────────────────────
  `expect_equal(ncol(draw_estimates(des)), 7)` did not produce any warnings.
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 456 SKIPPED: 5 FAILED: 1
  1. Failure: gam (@test-model.R#247) 
  
  Error: testthat unit tests failed
  Execution halted
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    extdata   4.8Mb
DeconCPdf: no visible global function definition for ‘bw.nrd0’
DeconCPdf: no visible global function definition for ‘bw.nrd’
DeconCPdf: no visible global function definition for ‘bw.ucv’
DeconCPdf: no visible global function definition for ‘bw.bcv’
DeconCPdf: no visible global function definition for ‘bw.SJ’
DeconCPdf: no visible global function definition for ‘density’
DeconCPdf: no visible global function definition for ‘dnorm’
bw.dboot2 : suppL2: no visible global function definition for ‘density’
bw.dboot2 : suppL2: no visible global function definition for ‘rnorm’
bw.dboot2 : gaussL2: no visible global function definition for
  ‘density’
bw.dboot2 : gaussL2: no visible global function definition for ‘rnorm’
bw.dmise: no visible global function definition for ‘var’
plot.Decon: no visible global function definition for ‘plot.default’
plot.Decon: no visible global function definition for ‘abline’
Undefined global functions or variables:
  abline bw.SJ bw.bcv bw.nrd bw.nrd0 bw.ucv density dnorm plot.default
  rnorm var
Consider adding
  importFrom("graphics", "abline", "plot.default")
  importFrom("stats", "bw.SJ", "bw.bcv", "bw.nrd", "bw.nrd0", "bw.ucv",
             "density", "dnorm", "rnorm", "var")
to your NAMESPACE file.
File ‘decon/libs/decon.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'library' or 'require' call to ‘irr’ which was already attached by Depends.
  Please remove these calls from your code.
'library' or 'require' call to ‘rgl’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Found the following apparent S3 methods exported but not registered:
  predict.kmeans
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
.make3dScatterPlotDialog: no visible global function definition for
  ‘install.packages’
.makePackageDataDialog: no visible global function definition for
  ‘data’
.makeVignetteDialog: no visible global function definition for
  ‘vignette’
.onLoad: no visible binding for global variable ‘jgr.addMenuItem’
.onLoad : gui.addSeperator: no visible global function definition for
  ‘jgr.addMenuSeparator’
applyModel: no visible global function definition for ‘predict’
predict.kmeans : <anonymous>: no visible global function definition for
  ‘dist’
Undefined global functions or variables:
  data dist install.packages jgr.addMenuItem jgr.addMenuSeparator
  predict vignette
Consider adding
  importFrom("stats", "dist", "predict")
  importFrom("utils", "data", "install.packages", "vignette")
to your NAMESPACE file.
Package in Depends field not imported from: ‘Deducer’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
'library' or 'require' call to ‘klaR’ which was already attached by Depends.
  Please remove these calls from your code.
.makeICCDialog: no visible global function definition for ‘J’
.makeICCDialog: no visible global function definition for ‘new’
.makeICCDialog: no visible global function definition for ‘.jnull’
.makeNewFactorAnalysisDialog: no visible global function definition for
  ‘new’
.makeNewFactorAnalysisDialog: no visible global function definition for
  ‘J’
.makeNewFactorAnalysisDialog: no visible global function definition for
  ‘toJava’
.makeNewLDADialog: no visible global function definition for ‘new’
.makeNewLDADialog: no visible global function definition for ‘J’
.makeNewLDADialog : linkSubDialog: no visible global function
  definition for ‘new’
.makeNewLDADialog : linkSubDialog: no visible global function
  definition for ‘toJava’
.makeNewLDADialog: no visible global function definition for ‘toJava’
.makeNewReliabilityDialog: no visible global function definition for
  ‘new’
.makeNewReliabilityDialog: no visible global function definition for
  ‘toJava’
.onLoad: no visible global function definition for ‘.jnull’
.onLoad: no visible global function definition for ‘jgr.getMenuNames’
.onLoad: no visible global function definition for ‘jgr.insertMenu’
.onLoad: no visible global function definition for ‘jgr.addMenu’
.onLoad: no visible global function definition for ‘jgr.addMenuItem’
Undefined global functions or variables:
  .jnull J jgr.addMenu jgr.addMenuItem jgr.getMenuNames jgr.insertMenu
  new toJava
Consider adding
  importFrom("methods", "new")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
'library' or 'require' call to ‘UScensus2010’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Namespace in Imports field not imported from: ‘UScensus2010’
  All declared Imports should be used.
Packages in Depends field not imported from:
  ‘JavaGD’ ‘OpenStreetMap’ ‘maptools’ ‘rgdal’ ‘scales’ ‘sp’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Rd file 'loadCensusData.Rd':
  \usage lines wider than 90 characters:
                     year=c("2010","2000"), verbose=TRUE, osmTransform=TRUE, envir = .GlobalEnv)

Rd file 'spatialTextPlot.Rd':
  \examples lines wider than 100 characters:
     plot.window(c(-1.3160249151515616E7,-1.3155204307648793E7),c(3992993.9205893227,3996691.5618326175), xaxs = 'i', yaxs = 'i')
     plot(openmap(c(33.760525217369974,-118.22052955627441),c(33.73290566922855,-118.17521095275879),14,'bing'),add=TRUE)

These lines will be truncated in the PDF manual.
.makeQuickWordcloud: no visible global function definition for ‘J’
.makeQuickWordcloud: no visible global function definition for ‘new’
.makeQuickWordcloud: no visible global function definition for ‘.jnull’
.makeTextPlot: no visible global function definition for ‘J’
.makeTextPlot: no visible global function definition for ‘new’
.makeTextPlot: no visible global function definition for ‘.jnull’
.onLoad: no visible global function definition for ‘.jpackage’
.onLoad: no visible global function definition for ‘.jnew’
.onLoad: no visible global function definition for ‘J’
make.color.scale: no visible global function definition for ‘rgb’
Undefined global functions or variables:
  .jnew .jnull .jpackage J new rgb
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("methods", "new")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
File ‘deformula/libs/deformula.so’:
  Found no call to: ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
src/Makevars: SHLIB_OPENMP_FFLAGS is preferred to SHLIB_OPENMP_FCFLAGS in PKG_FCFLAGS
  src/Makevars: SHLIB_OPENMP_FCFLAGS is included in PKG_FCFLAGS but not SHLIB_OPENMP_CFLAGS in PKG_LIBS
  src/Makevars: SHLIB_OPENMP_FCFLAGS is included in PKG_LIBS but linking is by C
Use of these macros is discussed in sect 1.2.1.1 of ‘Writing R
Extensions’. The macros for different languages may differ so the
matching macro must be used in PKG_CXXFLAGS (etc) and match that used
in PKG_LIBS (except for Fortran: see the manual).
installed size is 87.6Mb
  sub-directories of 1Mb or more:
    libs  85.0Mb
bootbagg: no visible global function definition for ‘runif’
bootworpl: no visible global function definition for ‘runif’
des12: no visible global function definition for ‘rnorm’
des12: no visible global function definition for ‘runif’
eval.stage.gauss: no visible global function definition for ‘var’
plotparti: no visible global function definition for ‘plot’
plotparti: no visible global function definition for ‘lines’
plotpartilev: no visible global function definition for ‘plot’
plotpartilev: no visible global function definition for ‘polygon’
plotpartilev: no visible global function definition for ‘points’
simesi: no visible global function definition for ‘runif’
simesi3d: no visible global function definition for ‘runif’
simfssk: no visible global function definition for ‘rnorm’
simfssk: no visible global function definition for ‘runif’
simmix.delt: no visible global function definition for ‘rnorm’
simmix.delt: no visible global function definition for ‘runif’
simpp: no visible global function definition for ‘rnorm’
simpp: no visible global function definition for ‘runif’
simutree: no visible global function definition for ‘runif’
stage.gaussR: no visible global function definition for ‘var’
unidis: no visible global function definition for ‘runif’
Undefined global functions or variables:
  lines plot points polygon rnorm runif var
Consider adding
  importFrom("graphics", "lines", "plot", "points", "polygon")
  importFrom("stats", "rnorm", "runif", "var")
to your NAMESPACE file.
File ‘delt/libs/delt.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Bootstrapping.CI: no visible global function definition for ‘quantile’
D.Jost: no visible global function definition for ‘read.table’
D.Jost: no visible global function definition for ‘write.table’
Dv.locis.corrected.calc: no visible global function definition for
  ‘p.adjust’
Gst.Nei: no visible global function definition for ‘read.table’
Gst.Nei: no visible global function definition for ‘write.table’
H.out: no visible global function definition for ‘write.table’
Hardy.calc: no visible global function definition for ‘chisq.test’
critical.ci.values: no visible global function definition for
  ‘quantile’
inputformat: no visible global function definition for ‘read.table’
inputformat: no visible global function definition for ‘write.table’
over.all.pops: no visible global function definition for ‘write.table’
p.value.correcture: no visible global function definition for
  ‘p.adjust’
pair.pops: no visible global function definition for ‘write.table’
Undefined global functions or variables:
  chisq.test p.adjust quantile read.table write.table
Consider adding
  importFrom("stats", "chisq.test", "p.adjust", "quantile")
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.
DendSer: no visible global function definition for ‘getFromNamespace’
crit2cost : <anonymous>: no visible global function definition for
  ‘as.dist’
dser.dist: no visible global function definition for ‘hclust’
dser.matrix: no visible global function definition for ‘dist’
plotAsColor: no visible global function definition for ‘image’
plotAsColor: no visible global function definition for ‘box’
plotAsColor: no visible global function definition for ‘axis’
seriation_method_dist_dser: no visible global function definition for
  ‘hclust’
seriation_method_dist_dser: no visible global function definition for
  ‘modifyList’
seriation_method_leafsort: no visible global function definition for
  ‘modifyList’
Undefined global functions or variables:
  as.dist axis box dist getFromNamespace hclust image modifyList
Consider adding
  importFrom("graphics", "axis", "box", "image")
  importFrom("stats", "as.dist", "dist", "hclust")
  importFrom("utils", "getFromNamespace", "modifyList")
to your NAMESPACE file.
File ‘DendSer/libs/DendSer.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘denpro/libs/denpro.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘mvtnorm’
  All declared Imports should be used.
File ‘DEoptim/libs/DEoptim.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    libs   5.8Mb
File ‘depth/libs/depth.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘datasets’
  All declared Imports should be used.
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    R      1.5Mb
    doc    1.6Mb
    help   1.4Mb
    libs   1.5Mb
ds: no visible global function definition for ‘is.ts’
ds: no visible global function definition for ‘frequency’
getds: no visible global function definition for ‘resid’
getds: no visible global function definition for ‘lm.fit’
getds: no visible global function definition for ‘sd’
getds: no visible global function definition for ‘var’
getds: no visible global function definition for ‘fitted’
Undefined global functions or variables:
  fitted frequency is.ts lm.fit resid sd var
Consider adding
  importFrom("stats", "fitted", "frequency", "is.ts", "lm.fit", "resid",
             "sd", "var")
to your NAMESPACE file.
Rd file 'ds.Rd':
  \usage lines wider than 90 characters:
     ds(z, Fm = 6, Fs = 6, type = c("daily", "monthly"), searchQ=TRUE, lag.max=20, ic=c("BIC","AIC"), standardizeQ=TRUE)

These lines will be truncated in the PDF manual.
Packages which this enhances but not available for checking:
  'gurobi', 'Rcplex', 'Rmosek'
File ‘desire/libs/desire.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
fs.agreement.part: no visible global function definition for ‘as.dist’
fs.agreement.part: no visible global function definition for ‘cor’
fs.leave.k.out.combn: no visible global function definition for ‘sd’
fs.leave.k.out.sample: no visible global function definition for ‘sd’
fs.rd: no visible global function definition for ‘pchisq’
fs.selection: no visible global function definition for ‘p.adjust’
plot.FIT: no visible global function definition for ‘qchisq’
plot.FIT: no visible global function definition for ‘ppoints’
plot.FIT: no visible global function definition for ‘plot’
plot.FIT: no visible global function definition for ‘points’
plot.FIT: no visible global function definition for ‘abline’
plotJn: no visible global function definition for ‘plot’
plotJn: no visible global function definition for ‘points’
robust.distance.signed: no visible global function definition for
  ‘mahalanobis’
snowball: no visible global function definition for ‘is’
snowball: no visible global function definition for ‘median’
weight.sd: no visible binding for global variable ‘sd’
Undefined global functions or variables:
  abline as.dist cor is mahalanobis median p.adjust pchisq plot points
  ppoints qchisq sd
Consider adding
  importFrom("graphics", "abline", "plot", "points")
  importFrom("methods", "is")
  importFrom("stats", "as.dist", "cor", "mahalanobis", "median",
             "p.adjust", "pchisq", "ppoints", "qchisq", "sd")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
File ‘deTestSet/libs/deTestSet.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 12.1Mb
  sub-directories of 1Mb or more:
    libs  12.0Mb
Package in Depends field not imported from: ‘dplR’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘.get’ ‘InteractiveDetrending’ ‘RemoveTrend’
Rd file 'EPS.value.Rd':
  \examples lines wider than 100 characters:
     co021.subset<-co021.subset[,-c(28,30,31)] ## to remove the following series "645232","646107" and "646118"

These lines will be truncated in the PDF manual.
installed size is 20.4Mb
  sub-directories of 1Mb or more:
    libs  19.6Mb
Package in Depends field not imported from: ‘ash’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
File ‘DetSel/libs/DetSel.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Unexported objects imported by ':::' calls:
  ‘dexter:::get_resp_data’ ‘dexter:::qcolors’
  See the note in ?`:::` about the use of this operator.
simulate_dataframe : generate_dumb_answer: no visible global function
  definition for ‘rbinom’
simulate_dataframe : generate_dumb_answer: no visible global function
  definition for ‘rnorm’
simulate_dataframe : generate_initial: no visible global function
  definition for ‘rbinom’
simulate_dataframe: no visible binding for global variable ‘randu’
simulate_dataframe: no visible global function definition for ‘rbinom’
simulate_dataframe: no visible global function definition for ‘rnorm’
simulate_dataframe: no visible global function definition for ‘rpois’
simulate_dataframe : add_NAs: no visible global function definition for
  ‘rbinom’
Undefined global functions or variables:
  randu rbinom rnorm rpois
Consider adding
  importFrom("datasets", "randu")
  importFrom("stats", "rbinom", "rnorm", "rpois")
to your NAMESPACE file.
File ‘dfphase1/libs/dfphase1.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 50.3Mb
  sub-directories of 1Mb or more:
    libs  49.8Mb
makeAdjMatrix: no visible global function definition for ‘combn’
plotPosteriorN: no visible global function definition for ‘plot’
plotPosteriorN: no visible global function definition for ‘title’
plotPosteriorN: no visible global function definition for ‘lines’
plotPosteriorN: no visible global function definition for ‘legend’
venn3: no visible global function definition for ‘plot’
venn3: no visible global function definition for ‘runif’
venn3: no visible global function definition for ‘points’
venn3: no visible global function definition for ‘lines’
venn3: no visible global function definition for ‘text’
venn4: no visible global function definition for ‘plot’
venn4: no visible global function definition for ‘lines’
venn4: no visible global function definition for ‘runif’
venn4: no visible global function definition for ‘points’
Undefined global functions or variables:
  combn legend lines plot points runif text title
Consider adding
  importFrom("graphics", "legend", "lines", "plot", "points", "text",
             "title")
  importFrom("stats", "runif")
  importFrom("utils", "combn")
to your NAMESPACE file.
installed size is 20.0Mb
  sub-directories of 1Mb or more:
    doc    1.5Mb
    libs  18.0Mb
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    data   6.3Mb
cvm.test : cvm.pval.disc: no visible global function definition for
  ‘integrate’
cvm.test : cvm.pval.disc: no visible global function definition for
  ‘dchisq’
cvm.test : cvm.pval.disc: no visible global function definition for
  ‘nlm’
cvm.test : cvm.stat.disc: no visible global function definition for
  ‘knots’
cvm.test : cvm.pval.disc.sim: no visible global function definition for
  ‘knots’
cvm.test : cvm.pval.disc.sim: no visible global function definition for
  ‘runif’
cvm.test: no visible global function definition for ‘is.stepfun’
cvm.test: no visible global function definition for ‘knots’
ks.test : exact.pval : ts.pval: no visible global function definition
  for ‘ecdf’
ks.test : sim.pval: no visible global function definition for ‘runif’
ks.test : sim.pval : getks: no visible global function definition for
  ‘ecdf’
ks.test: no visible global function definition for ‘is.stepfun’
ks.test: no visible global function definition for ‘knots’
ks.test: no visible global function definition for ‘ecdf’
Undefined global functions or variables:
  dchisq ecdf integrate is.stepfun knots nlm runif
Consider adding
  importFrom("stats", "dchisq", "ecdf", "integrate", "is.stepfun",
             "knots", "nlm", "runif")
to your NAMESPACE file.
File ‘dgof/libs/dgof.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘mgcv’
  All declared Imports should be used.
File ‘DiceOptim/libs/DiceOptim.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Packages in Depends field not imported from:
  ‘PropCIs’ ‘gee’ ‘rootSolve’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
diffpci: no visible global function definition for ‘diffpropci.Wald.mp’
diffpci: no visible global function definition for ‘diffpropci.mp’
diffpci: no visible global function definition for ‘scoreci.mp’
exact.cond : exactci: no visible global function definition for ‘qf’
exact.midp : binom.midp : f.low: no visible global function definition
  for ‘dbinom’
exact.midp : binom.midp : f.low: no visible global function definition
  for ‘pbinom’
exact.midp : binom.midp : f.up: no visible global function definition
  for ‘dbinom’
exact.midp : binom.midp : f.up: no visible global function definition
  for ‘pbinom’
exact.midp : binom.midp : one.ci: no visible global function definition
  for ‘uniroot’
np.nv: no visible global function definition for ‘qnorm’
np.t: no visible global function definition for ‘qt’
uncond: no visible global function definition for ‘qnorm’
wald.cc: no visible global function definition for ‘qnorm’
wilson: no visible global function definition for ‘qnorm’
wilson: no visible global function definition for ‘uniroot.all’
wilson.cc: no visible global function definition for ‘qnorm’
wilson.cc: no visible global function definition for ‘uniroot.all’
wilson.phi: no visible global function definition for ‘qnorm’
wilson.phi: no visible global function definition for ‘uniroot.all’
Undefined global functions or variables:
  dbinom diffpropci.Wald.mp diffpropci.mp pbinom qf qnorm qt scoreci.mp
  uniroot uniroot.all
Consider adding
  importFrom("stats", "dbinom", "pbinom", "qf", "qnorm", "qt", "uniroot")
to your NAMESPACE file.
rkMethodPlot: no visible global function definition for ‘par’
rkMethodPlot: no visible global function definition for ‘axis’
rkMethodPlot: no visible global function definition for ‘points’
rkMethodPlot: no visible global function definition for ‘text’
rkMethodPlot: no visible global function definition for ‘segments’
rkimp: no visible global function definition for ‘runif’
stability.bruteforce: no visible global function definition for ‘plot’
stability.bruteforce: no visible global function definition for
  ‘points’
stability.bruteforce: no visible global function definition for
  ‘abline’
stability.multistep: no visible global function definition for ‘plot’
stability.multistep: no visible global function definition for ‘lines’
stability.multistep: no visible global function definition for
  ‘polygon’
stability.multistep: no visible global function definition for ‘abline’
Undefined global functions or variables:
  abline axis lines par plot points polygon runif segments text
Consider adding
  importFrom("graphics", "abline", "axis", "lines", "par", "plot",
             "points", "polygon", "segments", "text")
  importFrom("stats", "runif")
to your NAMESPACE file.
installed size is  9.4Mb
  sub-directories of 1Mb or more:
    doc   9.3Mb
File ‘diffIRT/libs/diffIRT.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘gplots’
  All declared Imports should be used.
File ‘diffrprojects/libs/diffrprojects.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    doc   5.2Mb
File ‘DiffusionRgqd/libs/DiffusionRgqd.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘DiffusionRimp/libs/DiffusionRimp.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    doc   5.6Mb
File ‘DiffusionRjgqd/libs/DiffusionRjgqd.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 12.0Mb
  sub-directories of 1Mb or more:
    libs  11.1Mb
'library' or 'require' calls to packages already attached by Depends:
  ‘maptools’ ‘spatstat’ ‘spdep’
  Please remove these calls from your code.
fAssocmatrix : fAssocmatrix1: no visible global function definition for
  ‘coordinates<-’
fAssocplot: no visible global function definition for ‘plot’
fAssocplot: no visible global function definition for ‘coordinates’
fAssocplot: no visible global function definition for ‘text’
fAssocplot: no visible global function definition for ‘box’
fDrawfigure: no visible global function definition for ‘slot’
fDrawfigure : <anonymous>: no visible global function definition for
  ‘slot’
fDrawfigure: no visible global function definition for
  ‘SpatialPolygons’
fDrawfigure: no visible global function definition for ‘spsample’
fDrawfigure: no visible global function definition for ‘plot’
fDrawfigure: no visible global function definition for ‘image’
fDrawfigure: no visible global function definition for
  ‘colorRampPalette’
fDrawfigure: no visible global function definition for ‘points’
fRanXY : <anonymous>: no visible global function definition for ‘slot’
fRanXY : <anonymous>: no visible global function definition for
  ‘spsample’
Undefined global functions or variables:
  SpatialPolygons box colorRampPalette coordinates coordinates<- image
  plot points slot spsample text
Consider adding
  importFrom("grDevices", "colorRampPalette")
  importFrom("graphics", "box", "image", "plot", "points", "text")
  importFrom("methods", "slot")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Rd file 'fAssocmatrix.Rd':
  \examples lines wider than 100 characters:
     ## Run 20 permutations using individuals accoring to sighting probability (ave no. roos seen on survey  = 6) 

These lines will be truncated in the PDF manual.
Packages in Depends field not imported from:
  ‘Rcpp’ ‘igraph’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
File ‘dils/libs/dils.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘DIME/libs/DIME.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
aLine: no visible global function definition for ‘lines’
aLine: no visible global function definition for ‘ecdf’
dip.test: no visible global function definition for ‘complete.cases’
dip.test: no visible global function definition for ‘runif’
dip.test: no visible global function definition for ‘approx’
plot.dip: no visible global function definition for ‘par’
plot.dip: no visible global function definition for ‘ecdf’
plot.dip: no visible global function definition for ‘plot’
plot.dip: no visible global function definition for ‘title’
plot.dip: no visible global function definition for ‘abline’
plot.dip: no visible global function definition for ‘axis’
plot.dip: no visible global function definition for ‘legend’
Undefined global functions or variables:
  abline approx axis complete.cases ecdf legend lines par plot runif
  title
Consider adding
  importFrom("graphics", "abline", "axis", "legend", "lines", "par",
             "plot", "title")
  importFrom("stats", "approx", "complete.cases", "ecdf", "runif")
to your NAMESPACE file.
File ‘DIRECT/libs/DIRECT.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘DirichletReg/libs/DirichletReg.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Error in re-building vignettes:
  ...
Loading required package: Formula
Loading required package: rgl
Warning in DR_data(ArcticLake[, 1:3]) :
  not all rows sum up to 1 => normalization forced
Warning in DR_data(ArcticLake[, 1:3]) :
  not all rows sum up to 1 => normalization forced
Warning in DR_data(Bld[, 1:4]) :
  not all rows sum up to 1 => normalization forced
Warning in DR_data(Bld[31:36, 1:4]) :
  not all rows sum up to 1 => normalization forced
Warning in DR_data(Bld[31:36, 1:4]) :
  not all rows sum up to 1 => normalization forced
Warning in DR_data(BloodSamples[, c(1, 2, 4)]) :
  not all rows sum up to 1 => normalization forced
only one variable in [0, 1] supplied - beta-distribution assumed.
check this assumption.
Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,  : 
  Running 'texi2dvi' on 'DirichletReg-vig.tex' failed.
LaTeX errors:
! LaTeX Error: Option clash for package xcolor.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
Calls: buildVignettes -> texi2pdf -> texi2dvi
Execution halted
installed size is 10.2Mb
  sub-directories of 1Mb or more:
    libs  10.1Mb
File ‘dismo/libs/dismo.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
densest: no visible global function definition for ‘weighted.mean’
diss: no visible global function definition for ‘cov’
neighbors: no visible global function definition for ‘cov’
Undefined global functions or variables:
  cov weighted.mean
Consider adding
  importFrom("stats", "cov", "weighted.mean")
to your NAMESPACE file.
File ‘dissUtils/libs/dissUtils.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Packages in Depends field not imported from:
  ‘car’ ‘prettyGraphs’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Found the following apparent S3 methods exported but not registered:
  print.Cmat print.DistatisR print.Splus
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Chi2DistanceFromSort: no visible global function definition for
  ‘model.matrix’
GraphDistatisAll: no visible global function definition for
  ‘createColorVectorsByDesign’
GraphDistatisBoot: no visible global function definition for
  ‘createColorVectorsByDesign’
GraphDistatisBoot: no visible global function definition for
  ‘dataEllipse’
GraphDistatisBoot: no visible global function definition for
  ‘peeledHull’
GraphDistatisCompromise: no visible global function definition for
  ‘createColorVectorsByDesign’
GraphDistatisCompromise: no visible global function definition for
  ‘prettyPlot’
GraphDistatisPartial: no visible global function definition for
  ‘createColorVectorsByDesign’
GraphDistatisPartial: no visible global function definition for
  ‘points’
GraphDistatisPartial: no visible global function definition for
  ‘prettyPlot’
GraphDistatisRv: no visible global function definition for
  ‘createColorVectorsByDesign’
GraphDistatisRv: no visible global function definition for ‘prettyPlot’
Undefined global functions or variables:
  createColorVectorsByDesign dataEllipse model.matrix peeledHull points
  prettyPlot
Consider adding
  importFrom("graphics", "points")
  importFrom("stats", "model.matrix")
to your NAMESPACE file.
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘proxy’
  All declared Imports should be used.
dist.multiPhylo: no visible global function definition for ‘as.dist’
gromov.hyperbolicity: no visible global function definition for
  ‘as.dist’
mcmc.target.seq: no visible global function definition for ‘runif’
phylo.diff: no visible global function definition for ‘par’
phylo.diff: no visible global function definition for ‘plot’
Undefined global functions or variables:
  as.dist par plot runif
Consider adding
  importFrom("graphics", "par", "plot")
  importFrom("stats", "as.dist", "runif")
to your NAMESPACE file.
File ‘distory/libs/distory.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
prepare_Rd: extract.val.Rd:25-26: Dropping empty section \note
prepare_Rd: extract.val.Rd:27: Dropping empty section \seealso
installed size is  6.9Mb
  sub-directories of 1Mb or more:
    libs   5.6Mb
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    libs   4.8Mb
'library' or 'require' call to ‘glmnet’ which was already attached by Depends.
  Please remove these calls from your code.
Packages in Depends field not imported from:
  ‘glmnet’ ‘tcltk’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
File ‘dkDNA/libs/dkDNA.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 17.0Mb
  sub-directories of 1Mb or more:
    include  16.7Mb
'library' or 'require' calls to packages already attached by Depends:
  ‘nlme’ ‘wgaim’
  Please remove these calls from your code.
'library' or 'require' call to ‘asreml’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
  ‘ibdreg’ ‘mgcv’ ‘nlme’ ‘qtl’ ‘wgaim’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Unexported object imported by a ':::' call: ‘qtl:::adjust.rf.ri’
  See the note in ?`:::` about the use of this operator.
Foreign function call to a different package:
  .C(cfunc, ..., PACKAGE = "qtl")
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Rd file 'dlcross.Rd':
  \usage lines wider than 90 characters:
     dlcross(format = c("rqtl", "dlmap", "other"), genobj, pheobj, mapobj, idname="ID", genfile, phefile, mapfile, type, step=0, fixpos=0, e ... [TRUNCATED]

Rd file 'dlmap-internal.Rd':
  \usage lines wider than 90 characters:
     dlcross.dlmap(genobj, pheobj, mapobj, idname, genfile, mapfile, phefile, type, step, fixpos, estmap, ...)
     calc.genoprob2(cross, pos, error.prob=1e-04, map.function=c("haldane", "kosambi", "c-f", "morgan"))

Rd file 'dlmap.Rd':
  \usage lines wider than 90 characters:
     plot(x, chr, max.dist, qcol="light blue", mcol="red", pcol="purple", marker.names=FALSE, ...)

These lines will be truncated in the PDF manual.
installed size is  8.1Mb
  sub-directories of 1Mb or more:
    R      1.4Mb
    data   2.1Mb
    libs   3.8Mb
Namespaces in Imports field not imported from:
  ‘dbplyr’ ‘randomForest’
  All declared Imports should be used.
Warning: no function found corresponding to methods exports from ‘DMwR’ for: ‘show’

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Packages in Depends field not imported from:
  ‘grid’ ‘lattice’ ‘methods’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Missing object imported by a ':::' call: ‘rpart:::rpconvert’
Unexported objects imported by ':::' calls:
  ‘rpart:::rpart.branch’ ‘rpart:::rpartco’
  ‘rpart:::string.bounding.box’
  See the note in ?`:::` about the use of this operator.
'library' or 'require' call to ‘igraph’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
network.modules: no visible global function definition for
  ‘graph.empty’
network.modules: no visible global function definition for
  ‘add.vertices’
network.modules: no visible global function definition for ‘add.edges’
network.modules: no visible global function definition for ‘tkplot’
network.modules: no visible global function definition for ‘V’
Undefined global functions or variables:
  V add.edges add.vertices graph.empty tkplot
File ‘dna/libs/dna.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘DNAtools/libs/DNAtools.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘GOstats’ ‘caTools’ ‘fdrtool’
  All declared Imports should be used.
DNMF: no visible global function definition for ‘runif’
NMFpval: no visible global function definition for ‘p.adjust’
ndNMF: no visible global function definition for ‘runif’
rnk: no visible global function definition for ‘write.table’
Undefined global functions or variables:
  p.adjust runif write.table
Consider adding
  importFrom("stats", "p.adjust", "runif")
  importFrom("utils", "write.table")
to your NAMESPACE file.
ppert: no visible global function definition for ‘pbeta’
prepare8pkg: no visible global function definition for ‘glob2rx’
qpert: no visible global function definition for ‘qbeta’
rpert: no visible global function definition for ‘rbeta’
Undefined global functions or variables:
  glob2rx pbeta qbeta rbeta
Consider adding
  importFrom("stats", "pbeta", "qbeta", "rbeta")
  importFrom("utils", "glob2rx")
to your NAMESPACE file.
File ‘documair/libs/documair.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 11.5Mb
  sub-directories of 1Mb or more:
    doc    3.2Mb
    libs   8.0Mb
.info: no visible global function definition for ‘packageDescription’
redisWorker: no visible global function definition for ‘flush.console’
Undefined global functions or variables:
  flush.console packageDescription
Consider adding
  importFrom("utils", "flush.console", "packageDescription")
to your NAMESPACE file.
File ‘doRedis/libs/doRedis.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Rd file 'dpa.generate.lag.Rd':
  \usage lines wider than 90 characters:
     dpa.generate.lag(dataframe = NULL, tickColumn = NULL, sourceColumn = NULL, minLag=1,maxLag=1)

Rd file 'dpa.relations.addRelations.Rd':
  \usage lines wider than 90 characters:
     dpa.relations.addRelations(From_column = NULL, To_column = NULL, Lag_in = NULL, minLag = NULL, maxLag = NULL, Direction = NULL)

These lines will be truncated in the PDF manual.
Found the following significant warnings:
  Warning: ‘__var_1_mmb.offset’ is used uninitialized in this function [-Wuninitialized]
See ‘/data/gannet/ripley/R/packages/tests-clang/dpglasso.Rcheck/00install.out’ for details.
File ‘dpglasso/libs/dpglasso.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘tidyr’ ‘tidyverse’
  All declared Imports should be used.
installed size is 28.4Mb
  sub-directories of 1Mb or more:
    libs  26.2Mb
Namespaces in Imports field not imported from:
  ‘bit64’ ‘rstudioapi’
  All declared Imports should be used.
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    R      1.7Mb
    libs   3.5Mb
File ‘DPpackage/libs/DPpackage.so’:
  Found ‘_gfortran_st_close’, possibly from ‘close’ (Fortran)
    Objects: ‘DPdensityreg.o’, ‘LDBDPdensity.o’, ‘LDDPdensity.o’,
      ‘LDDPsurvival.o’, ‘LDPDdoublyintsba.o’, ‘LDTFPdensity.o’,
      ‘LDTFPglmmpois.o’, ‘LDTFPsurvival.o’, ‘PSgamgam.o’,
      ‘PSgamgauss.o’, ‘PSgamlogit.o’, ‘PSgampois.o’, ‘PSgamprob.o’,
      ‘ToolsLDTFP.o’
  Found ‘_gfortran_st_open’, possibly from ‘open’ (Fortran)
    Objects: ‘DPdensityreg.o’, ‘LDBDPdensity.o’, ‘LDDPdensity.o’,
      ‘LDDPsurvival.o’, ‘LDPDdoublyintsba.o’, ‘LDTFPdensity.o’,
      ‘LDTFPglmmpois.o’, ‘LDTFPsurvival.o’, ‘PSgamgam.o’,
      ‘PSgamgauss.o’, ‘PSgamlogit.o’, ‘PSgampois.o’, ‘PSgamprob.o’,
      ‘ToolsLDTFP.o’
  Found ‘_gfortran_st_read’, possibly from ‘read’ (Fortran)
    Objects: ‘DPdensityreg.o’, ‘LDDPdensity.o’, ‘LDDPsurvival.o’,
      ‘LDPDdoublyintsba.o’, ‘PSgamgam.o’, ‘PSgamgauss.o’,
      ‘PSgamlogit.o’, ‘PSgampois.o’, ‘PSgamprob.o’, ‘ToolsLDTFP.o’
  Found ‘_gfortran_st_rewind’, possibly from ‘rewind’ (Fortran)
    Objects: ‘DPdensityreg.o’, ‘LDDPdensity.o’, ‘LDDPsurvival.o’,
      ‘LDPDdoublyintsba.o’, ‘PSgamgam.o’, ‘PSgamgauss.o’,
      ‘PSgamlogit.o’, ‘PSgampois.o’, ‘PSgamprob.o’, ‘ToolsLDTFP.o’
  Found ‘_gfortran_st_write’, possibly from ‘write’ (Fortran), ‘print’
    (Fortran)
    Objects: ‘DPdensityreg.o’, ‘LDBDPdensity.o’, ‘LDDPdensity.o’,
      ‘LDDPsurvival.o’, ‘LDPDdoublyintsba.o’, ‘LDTFPdensity.o’,
      ‘LDTFPglmmpois.o’, ‘LDTFPsurvival.o’, ‘PSgamgam.o’,
      ‘PSgamgauss.o’, ‘PSgamlogit.o’, ‘PSgampois.o’, ‘PSgamprob.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    libs   5.6Mb
Found the following significant warnings:
  compnoreggilks.cpp:31:10: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  compnoreggilks.cpp:90:10: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  compreggilks.cpp:32:10: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  compreggilks.cpp:88:10: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  compreggilks.cpp:150:10: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  compreggilks.cpp:207:10: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  compreggilks.cpp:380:8: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
See ‘/data/gannet/ripley/R/packages/tests-clang/DPWeibull.Rcheck/00install.out’ for details.
DRaWR: no visible global function definition for ‘write.table’
DRaWR: no visible global function definition for ‘read.table’
DRaWR: no visible global function definition for ‘aggregate’
DRaWR: no visible global function definition for ‘slot’
Undefined global functions or variables:
  aggregate read.table slot write.table
Consider adding
  importFrom("methods", "slot")
  importFrom("stats", "aggregate")
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
File ‘drgee/libs/drgee.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
cdfDRM: no visible global function definition for ‘tail’
densityDRM: no visible binding for global variable ‘density’
drmdel: no visible binding for global variable ‘optim’
drmdel: no visible global function definition for ‘pchisq’
quantEst: no visible global function definition for ‘tail’
quantileCompWald: no visible global function definition for ‘pchisq’
quantileCompWald: no visible global function definition for ‘p.adjust’
quantileDRM: no visible global function definition for ‘tail’
quantileDRM: no visible global function definition for ‘density’
Undefined global functions or variables:
  density optim p.adjust pchisq tail
Consider adding
  importFrom("stats", "density", "optim", "p.adjust", "pchisq")
  importFrom("utils", "tail")
to your NAMESPACE file.
File ‘drmdel/libs/drmdel.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    media       2.2Mb
    shinyapps   2.7Mb
Namespaces in Imports field not imported from:
  ‘knitr’ ‘rmarkdown’ ‘utils’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘rJava’ ‘tools’ ‘xtable’
  All declared Imports should be used.
DSBayes: no visible global function definition for ‘qnorm’
DSBayes: no visible global function definition for ‘coef’
DSBayes: no visible global function definition for ‘vcov’
DSBayes : MLE: no visible global function definition for ‘qnorm’
DSBayes: no visible global function definition for ‘integrate’
DSBayes : qfunc.numer : <anonymous>: no visible global function
  definition for ‘dnorm’
DSBayes : ds.numer: no visible global function definition for
  ‘integrate’
DSBayes : lower: no visible global function definition for ‘qlogis’
DSBayes : lower: no visible global function definition for ‘integrate’
DSBayes : upper: no visible global function definition for ‘qlogis’
DSBayes : upper: no visible global function definition for ‘integrate’
DSBayes: no visible global function definition for ‘optimize’
DSBayes: no visible global function definition for ‘uniroot’
Undefined global functions or variables:
  coef dnorm integrate optimize qlogis qnorm uniroot vcov
Consider adding
  importFrom("stats", "coef", "dnorm", "integrate", "optimize", "qlogis",
             "qnorm", "uniroot", "vcov")
to your NAMESPACE file.
File ‘dse/libs/dse.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘DSL/libs/DSL.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
AIC.dspat: no visible global function definition for ‘coef’
LTDataFrame: no visible global function definition for ‘as.formula’
coef.dspat: no visible global function definition for ‘coef’
integrate.intensity: no visible global function definition for ‘coef’
integrate.intensity: no visible global function definition for
  ‘predict’
integrate.intensity: no visible global function definition for
  ‘model.matrix’
integrate.intensity: no visible global function definition for ‘vcov’
integrate.intensity: no visible global function definition for ‘fitted’
lgcp.correction: no visible global function definition for ‘predict’
lgcp.correction: no visible global function definition for
  ‘model.matrix’
lgcp.correction: no visible global function definition for ‘fitted’
lgcp.correction: no visible global function definition for ‘var’
lines_to_strips : line_to_strip: no visible global function definition
  for ‘as’
owin.gpc.poly: no visible global function definition for ‘as’
sample.points : sample.points.from.line: no visible global function
  definition for ‘runif’
sample.points: no visible global function definition for ‘model.matrix’
simCovariates: no visible global function definition for ‘quantile’
simPts: no visible global function definition for ‘model.matrix’
transect.intensity: no visible global function definition for ‘predict’
transect.intensity: no visible global function definition for ‘hist’
Undefined global functions or variables:
  as as.formula coef fitted hist model.matrix predict quantile runif
  var vcov
Consider adding
  importFrom("graphics", "hist")
  importFrom("methods", "as")
  importFrom("stats", "as.formula", "coef", "fitted", "model.matrix",
             "predict", "quantile", "runif", "var", "vcov")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Namespace in Imports field not imported from: ‘shapefiles’
  All declared Imports should be used.
DStree: no visible global function definition for ‘model.frame’
DStree: no visible global function definition for ‘model.matrix’
DStree: no visible global function definition for ‘model.response’
DStree: no visible global function definition for ‘as.formula’
bag: no visible global function definition for ‘model.frame’
bag: no visible global function definition for ‘model.response’
plot.DStree: no visible global function definition for ‘par’
plot.DStree: no visible global function definition for ‘plot’
plot.DStree: no visible global function definition for ‘rainbow’
plot.DStree: no visible global function definition for ‘lines’
plot.DStree: no visible global function definition for ‘legend’
predict.DStree: no visible global function definition for ‘predict’
print.DStree: no visible global function definition for ‘naprint’
prune.DStree: no visible global function definition for ‘median’
prune.DStree: no visible global function definition for ‘predict’
prune.DStree: no visible binding for global variable ‘var’
summ.MAE: no visible global function definition for ‘predict’
summary.DStree: no visible global function definition for ‘naprint’
Undefined global functions or variables:
  as.formula legend lines median model.frame model.matrix
  model.response naprint par plot predict rainbow var
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "legend", "lines", "par", "plot")
  importFrom("stats", "as.formula", "median", "model.frame",
             "model.matrix", "model.response", "naprint", "predict",
             "var")
to your NAMESPACE file.
File ‘DStree/libs/DStree.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
DCEA: no visible global function definition for ‘p.adjust’
DS: no visible global function definition for ‘p.adjust’
DS: no visible global function definition for ‘pdf’
DS: no visible global function definition for ‘plot’
DS: no visible global function definition for ‘dev.off’
LFC: no visible global function definition for ‘glm’
LFC: no visible global function definition for ‘predict’
PartialCor: no visible global function definition for ‘na.omit’
comDCGLplot: no visible global function definition for ‘pdf’
comDCGLplot: no visible global function definition for ‘plot’
comDCGLplot: no visible global function definition for ‘dev.off’
percentLinkfilter: no visible global function definition for ‘cor’
qLinkfilter: no visible global function definition for ‘cor’
qLinkfilter: no visible global function definition for ‘pt’
qLinkfilter: no visible global function definition for ‘p.adjust’
rLinkfilter: no visible global function definition for ‘cor’
varianceBasedfilter: no visible binding for global variable ‘var’
varianceBasedfilter: no visible global function definition for ‘median’
varianceBasedfilter: no visible global function definition for ‘pchisq’
Undefined global functions or variables:
  cor dev.off glm median na.omit p.adjust pchisq pdf plot predict pt
  var
Consider adding
  importFrom("grDevices", "dev.off", "pdf")
  importFrom("graphics", "plot")
  importFrom("stats", "cor", "glm", "median", "na.omit", "p.adjust",
             "pchisq", "predict", "pt", "var")
to your NAMESPACE file.
DLR: no visible global function definition for ‘formula’
DLR: no visible global function definition for ‘terms’
DLR: no visible global function definition for ‘model.matrix’
DLR: no visible global function definition for ‘as.formula’
DLR: no visible binding for global variable ‘binomial’
DLR: no visible global function definition for ‘coef’
DLR: no visible global function definition for ‘pnorm’
DLR: no visible global function definition for ‘qnorm’
acc.1test: no visible global function definition for ‘qnorm’
pv.gs: no visible global function definition for ‘pchisq’
pv.rpv: no visible global function definition for ‘qnorm’
pv.rpv: no visible global function definition for ‘pnorm’
pv.wgs: no visible global function definition for ‘pchisq’
sesp.diff.ci: no visible global function definition for ‘qnorm’
sesp.mcnemar: no visible global function definition for ‘pchisq’
Undefined global functions or variables:
  as.formula binomial coef formula model.matrix pchisq pnorm qnorm
  terms
Consider adding
  importFrom("stats", "as.formula", "binomial", "coef", "formula",
             "model.matrix", "pchisq", "pnorm", "qnorm", "terms")
to your NAMESPACE file.
src/Makevars: SHLIB_OPENMP_FFLAGS is included in PKG_FFLAGS but not SHLIB_OPENMP_CXXFLAGS in PKG_LIBS
  src/Makevars: SHLIB_OPENMP_CFLAGS is included in PKG_LIBS but linking is by C++
Use of these macros is discussed in sect 1.2.1.1 of ‘Writing R
Extensions’. The macros for different languages may differ so the
matching macro must be used in PKG_CXXFLAGS (etc) and match that used
in PKG_LIBS (except for Fortran: see the manual).
File ‘dti/libs/dti.so’:
  Found no call to: ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  9.1Mb
  sub-directories of 1Mb or more:
    doc    2.5Mb
    libs   5.3Mb
Namespaces in Imports field not imported from:
  ‘digest’ ‘dplyr’
  All declared Imports should be used.
cvSDDT: no visible global function definition for ‘qt’
cvSDDT : Cj_SD.fun: no visible global function definition for ‘combn’
cvSDDT: no visible global function definition for ‘uniroot’
cvSUDT: no visible global function definition for ‘rnorm’
cvSUDT: no visible global function definition for ‘rchisq’
cvSUDT : psi.fun: no visible global function definition for ‘pnorm’
cvSUDT: no visible global function definition for ‘qt’
cvSUDT: no visible global function definition for ‘uniroot’
cvSUDT: no visible global function definition for ‘combn’
nvDT : samplesize: no visible global function definition for ‘rnorm’
nvDT : samplesize: no visible global function definition for ‘rchisq’
nvDT : samplesize: no visible global function definition for ‘pnorm’
nvDT : ssBonf: no visible global function definition for ‘qnorm’
nvDT : ssBonf: no visible global function definition for ‘qt’
nvDT : ssBonf: no visible global function definition for ‘rnorm’
nvDT : ssBonf: no visible global function definition for ‘rchisq’
nvDT : ssBonf: no visible global function definition for ‘pnorm’
nvDT: no visible global function definition for ‘uniroot’
powDT: no visible global function definition for ‘rnorm’
powDT: no visible global function definition for ‘rchisq’
powDT: no visible global function definition for ‘pnorm’
qvSDDT: no visible global function definition for ‘pt’
qvSUDT: no visible global function definition for ‘rnorm’
qvSUDT: no visible global function definition for ‘rchisq’
qvSUDT : psi.fun: no visible global function definition for ‘pnorm’
qvSUDT: no visible global function definition for ‘pt’
qvSUDT : Pj.fun: no visible global function definition for ‘qt’
qvSUDT : Pj.fun: no visible global function definition for ‘uniroot’
Undefined global functions or variables:
  combn pnorm pt qnorm qt rchisq rnorm uniroot
Consider adding
  importFrom("stats", "pnorm", "pt", "qnorm", "qt", "rchisq", "rnorm",
             "uniroot")
  importFrom("utils", "combn")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘xml2’
  All declared Imports should be used.
'library' or 'require' calls to packages already attached by Depends:
  ‘ggm’ ‘tcltk’
  Please remove these calls from your code.
Packages in Depends field not imported from:
  ‘ggm’ ‘tcltk’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
installed size is 29.1Mb
  sub-directories of 1Mb or more:
    data   4.2Mb
    doc    1.3Mb
    libs  23.2Mb
Namespaces in Imports field not imported from:
  ‘maptools’ ‘tools’
  All declared Imports should be used.
File ‘dynpred/libs/dynpred.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘Rdpack’
  All declared Imports should be used.
installed size is  5.8Mb
  sub-directories of 1Mb or more:
    libs   5.6Mb
Namespaces in Imports field not imported from:
  ‘Rcpp’ ‘processx’
  All declared Imports should be used.
installed size is  9.0Mb
  sub-directories of 1Mb or more:
    libs   7.8Mb
File ‘EasyABC/libs/EasyABC.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘ggplot2’ ‘reshape2’ ‘scales’ ‘xtable’
  All declared Imports should be used.
Packages in Depends field not imported from:
  ‘base64enc’ ‘knitr’ ‘markdown’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
.file_attachment: no visible global function definition for
  ‘base64encode’
.plot_attachment: no visible global function definition for ‘dev.off’
.update_list: no visible global function definition for ‘modifyList’
easyHtmlReport: no visible global function definition for ‘knit’
easyHtmlReport: no visible global function definition for
  ‘markdownToHTML’
mime_part.data.frame: no visible global function definition for
  ‘write.table’
mime_part.ggplot: no visible binding for global variable ‘pdf’
mime_part.matrix: no visible global function definition for
  ‘write.table’
mime_part.trellis: no visible binding for global variable ‘pdf’
simpleHtmlReport : <anonymous>: no visible global function definition
  for ‘write.table’
Undefined global functions or variables:
  base64encode dev.off knit markdownToHTML modifyList pdf write.table
Consider adding
  importFrom("grDevices", "dev.off", "pdf")
  importFrom("utils", "modifyList", "write.table")
to your NAMESPACE file.
MARK.MCMC : Model.Creator: no visible global function definition for
  ‘combn’
MARK.MCMC : formula.Maker: no visible global function definition for
  ‘combn’
Simulate.CH: no visible global function definition for ‘rnorm’
Simulate.CH: no visible global function definition for ‘rbinom’
Undefined global functions or variables:
  combn rbinom rnorm
Consider adding
  importFrom("stats", "rbinom", "rnorm")
  importFrom("utils", "combn")
to your NAMESPACE file.
Error in re-building vignettes:
  ...
Quitting from lines 90-100 (easyPM_vignette_html.Rmd) 
Error: processing vignette 'easyPM_vignette_html.Rmd' failed with diagnostics:
undefined columns selected
Execution halted
File ‘ebdbNet/libs/ebdbNet.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘EBEN/libs/EBEN.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘EBglmnet/libs/EBglmnet.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘EBMAforecast/libs/EBMAforecast.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data   1.2Mb
    hac    4.0Mb
ecipex: no visible binding for global variable ‘nistiso’
ecipex : <anonymous>: no visible global function definition for ‘nextn’
ecipex : <anonymous>: no visible global function definition for ‘fft’
ecipex : <anonymous> : <anonymous>: no visible global function
  definition for ‘fft’
Undefined global functions or variables:
  fft nextn nistiso
Consider adding
  importFrom("stats", "fft", "nextn")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘pander’
  All declared Imports should be used.
dilution: no visible global function definition for ‘grey’
dilution: no visible global function definition for ‘lines’
dilution: no visible global function definition for ‘rect’
dilution: no visible global function definition for ‘segments’
dilution: no visible global function definition for ‘text’
dilution: no visible global function definition for ‘arrows’
pricefit: no visible global function definition for ‘runif’
Undefined global functions or variables:
  arrows grey lines rect runif segments text
Consider adding
  importFrom("grDevices", "grey")
  importFrom("graphics", "arrows", "lines", "rect", "segments", "text")
  importFrom("stats", "runif")
to your NAMESPACE file.
File ‘ecolMod/libs/ecolMod.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘tnet’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘dae’ ‘dplyr’
  All declared Imports should be used.
Package in Depends field not imported from: ‘spc’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Rd file 'ecoCusum.Rd':
  \examples lines wider than 100 characters:
     ## global optimization to h, H and n, when lambda = 0.01, "Nelder-Mead" optimization algorithm doesn't work

Rd file 'ecoEwma.Rd':
  \examples lines wider than 100 characters:
     #yy = ecoEwma(h = seq(.7,1,by=.01), w = seq(0.8,1,by=.01),k = seq(2.9,3.3, by = 0.01), n = 4:5, P0 = 110, P1 = 10, Cf = 50, contour.plo ... [TRUNCATED]

These lines will be truncated in the PDF manual.
File ‘edesign/libs/edesign.so’:
  Found no call to: ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
UCexactTest: no visible global function definition for ‘is’
UCexactTest: no visible global function definition for ‘new’
pvalue: no visible global function definition for ‘dnbinom’
pvalue: no visible global function definition for ‘pnbinom’
sup.mu: no visible global function definition for ‘predict’
Undefined global functions or variables:
  dnbinom is new pnbinom predict
Consider adding
  importFrom("methods", "is", "new")
  importFrom("stats", "dnbinom", "pnbinom", "predict")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
installed size is  5.6Mb
  sub-directories of 1Mb or more:
    libs   5.3Mb
File ‘EDR/libs/EDR.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    data   4.9Mb
    doc    1.2Mb
.gdf : find_loss: no visible global function definition for ‘rnorm’
.p.values : <anonymous>: no visible global function definition for
  ‘pnorm’
.relist.dwt: no visible global function definition for ‘relist’
.relist.dwt: no visible global function definition for ‘as’
.std.wav.coeff : <anonymous>: no visible global function definition for
  ‘mad’
regrid: no visible global function definition for ‘predict’
regrid: no visible global function definition for ‘var’
regrid: no visible global function definition for ‘medpolish’
Undefined global functions or variables:
  as mad medpolish pnorm predict relist rnorm var
Consider adding
  importFrom("methods", "as")
  importFrom("stats", "mad", "medpolish", "pnorm", "predict", "rnorm",
             "var")
  importFrom("utils", "relist")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
installed size is 116.4Mb
  sub-directories of 1Mb or more:
    libs  115.7Mb
'library' or 'require' call to ‘sna’ which was already attached by Depends.
  Please remove these calls from your code.
read.egonet: no visible global function definition for ‘read.csv’
Undefined global functions or variables:
  read.csv
Consider adding
  importFrom("utils", "read.csv")
to your NAMESPACE file.
Rd file 'egonet-package.Rd':
  \examples lines wider than 100 characters:
     #Compute the \code{effsize} and \code{constraint} to the restricted network with "EGO" and nodes with "P" in the name (i.e. the relativ ... [TRUNCATED]

Rd file 'index.egonet.Rd':
  \usage lines wider than 90 characters:
     index.egonet(dat, index = list("effsize", "constraint", "outdegree", "indegree", "efficiency", "hierarchy", "centralization", "gden", " ... [TRUNCATED]
  \examples lines wider than 100 characters:
     index.egonet(egomat,index=c("effsize","constraint","outdegree","indegree","efficiency", "centralization", "gden", "ego.gden", my.outdeg ... [TRUNCATED]

These lines will be truncated in the PDF manual.
Packages in Depends field not imported from:
  ‘class’ ‘quantreg’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
cluster.segment: no visible global function definition for ‘kmeans’
cluster.segment: no visible global function definition for ‘knn’
comp.anc.dist: no visible global function definition for ‘wilcox.test’
eila: no visible global function definition for ‘hasArg’
get.prob.score: no visible global function definition for ‘glm’
get.prob.score: no visible global function definition for ‘binomial’
get.prob.score: no visible binding for global variable ‘logit’
get.prob.score: no visible global function definition for ‘predict’
quantreg.est: no visible global function definition for ‘rnorm’
quantreg.est: no visible global function definition for ‘rq.fit.fnb’
Undefined global functions or variables:
  binomial glm hasArg kmeans knn logit predict rnorm rq.fit.fnb
  wilcox.test
Consider adding
  importFrom("methods", "hasArg")
  importFrom("stats", "binomial", "glm", "kmeans", "predict", "rnorm",
             "wilcox.test")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
comPlot: no visible global function definition for ‘plot’
comPlot: no visible global function definition for ‘lines’
convertEiData: no visible global function definition for ‘model.frame’
plot.eiwild: no visible global function definition for ‘plot’
plot.eiwild: no visible global function definition for ‘par’
plotResult: no visible global function definition for ‘grey’
plotResult: no visible global function definition for
  ‘colorRampPalette’
plotResult: no visible global function definition for ‘plot.new’
plotResult: no visible global function definition for ‘plot.window’
prioriPlot: no visible global function definition for ‘par’
prioriPlot : <anonymous> : <anonymous>: no visible global function
  definition for ‘rgamma’
prioriPlot : <anonymous>: no visible global function definition for
  ‘rbeta’
prioriPlot: no visible global function definition for ‘hist’
prioriPlot : <anonymous>: no visible global function definition for
  ‘rgamma’
prioriPlot : <anonymous> : <anonymous>: no visible global function
  definition for ‘rexp’
prioriPlot : <anonymous>: no visible global function definition for
  ‘rexp’
runMBayes: no visible global function definition for ‘runif’
runMBayes: no visible global function definition for ‘rgamma’
runMBayes: no visible global function definition for ‘rexp’
str0: no visible global function definition for ‘str’
tuneVars: no visible global function definition for ‘sd’
Undefined global functions or variables:
  colorRampPalette grey hist lines model.frame par plot plot.new
  plot.window rbeta rexp rgamma runif sd str
Consider adding
  importFrom("grDevices", "colorRampPalette", "grey")
  importFrom("graphics", "hist", "lines", "par", "plot", "plot.new",
             "plot.window")
  importFrom("stats", "model.frame", "rbeta", "rexp", "rgamma", "runif",
             "sd")
  importFrom("utils", "str")
to your NAMESPACE file.
File ‘eiwild/libs/eiwild.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Package in Depends field not imported from: ‘elec’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
BaB: no visible binding for global variable ‘calc.pairwise.e_p’
BaB: no visible global function definition for ‘weight.function’
BaB: no visible global function definition for ‘compute.stark.t’
LKPBound: no visible binding for global variable ‘calc.pairwise.e_p’
LKPBound: no visible global function definition for ‘weight.function’
LKPBound: no visible global function definition for ‘compute.stark.t’
eqValBound: no visible binding for global variable ‘calc.pairwise.e_p’
eqValBound: no visible global function definition for ‘weight.function’
eqValBound: no visible global function definition for ‘compute.stark.t’
getEbsMargin: no visible global function definition for ‘is.elec.data’
getEbsMargin: no visible global function definition for
  ‘maximumMarginBound’
makeStratObj: no visible global function definition for ‘is.elec.data’
makeStratObj: no visible global function definition for
  ‘maximumMarginBound’
strat.elec.data: no visible global function definition for ‘elec.data’
takeOutZeroMMB: no visible global function definition for
  ‘maximumMarginBound’
withReplaceBound: no visible binding for global variable
  ‘calc.pairwise.e_p’
withReplaceBound: no visible global function definition for
  ‘weight.function’
withReplaceBound: no visible global function definition for
  ‘compute.stark.t’
Undefined global functions or variables:
  calc.pairwise.e_p compute.stark.t elec.data is.elec.data
  maximumMarginBound weight.function
File ‘elec.strat/libs/elec.strat.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 11.7Mb
  sub-directories of 1Mb or more:
    data  11.5Mb
File ‘EloChoice/libs/EloChoice.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following apparent S3 methods exported but not registered:
  print.elo print.seqchecknopres print.sequencecheck scale.elo
  summary.elo
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
File ‘EL/libs/EL.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Likelihood: no visible global function definition for
  ‘makePSOCKcluster’
Likelihood: no visible global function definition for ‘clusterExport’
Likelihood: no visible global function definition for ‘makeForkCluster’
Likelihood.first.run: no visible global function definition for
  ‘clusterApply’
Likelihood.next.runs: no visible global function definition for
  ‘clusterApply’
es.stopCluster: no visible global function definition for ‘stopCluster’
plot.es.pedigree: no visible global function definition for ‘hasArg’
Undefined global functions or variables:
  clusterApply clusterExport hasArg makeForkCluster makePSOCKcluster
  stopCluster
Consider adding
  importFrom("methods", "hasArg")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Packages in Depends field not imported from:
  ‘MASS’ ‘mvtnorm’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
File ‘EMC/libs/EMC.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘graphics’ ‘maptools’ ‘rgeos’
  All declared Imports should be used.
File ‘emdist/libs/emdist.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 19.6Mb
  sub-directories of 1Mb or more:
    data   2.0Mb
    libs  17.4Mb
File ‘emIRT/libs/emIRT.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 10.4Mb
  sub-directories of 1Mb or more:
    extdata  10.2Mb
installed size is  8.2Mb
  sub-directories of 1Mb or more:
    R     1.8Mb
    xsd   5.4Mb
'library' or 'require' calls to packages already attached by Depends:
  ‘clusterSim’ ‘earth’
  Please remove these calls from your code.
Namespace in Imports field not imported from: ‘methods’
  All declared Imports should be used.
Packages in Depends field not imported from:
  ‘clusterSim’ ‘earth’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
distance: no visible global function definition for
  ‘data.Normalization’
emmatn: no visible global function definition for ‘runif’
estimateModel: no visible global function definition for ‘as.formula’
estimateModel: no visible global function definition for ‘earth’
estimateModel: no visible global function definition for ‘plotmo’
estimateModel: no visible global function definition for ‘predict’
mutation: no visible global function definition for ‘runif’
plot.emma: no visible global function definition for ‘colorRampPalette’
plot.emma: no visible global function definition for ‘par’
plot.emma: no visible global function definition for ‘persp’
plot.emma: no visible global function definition for ‘points’
plot.emma: no visible global function definition for ‘trans3d’
Undefined global functions or variables:
  as.formula colorRampPalette data.Normalization earth par persp plotmo
  points predict runif trans3d
Consider adding
  importFrom("grDevices", "colorRampPalette", "trans3d")
  importFrom("graphics", "par", "persp", "points")
  importFrom("stats", "as.formula", "predict", "runif")
to your NAMESPACE file.
'library' or 'require' call to ‘reshape’ which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: ‘reshape’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
MFFetch: no visible global function definition for ‘melt’
Undefined global functions or variables:
  melt
Rd file 'emme2.Rd':
  \usage lines wider than 90 characters:
          write.mf(data, numname, bank, file0, mcent, mmat, mat.dir, newname=NULL, newdesc=NULL)
  \examples lines wider than 100 characters:
          x <- matrix(rnorm(mf2), nrow(mf2), ncol(mf2)) #Random generate length(mf) numbers to write dummy data to bank
          write.mf(x, 2, "emme2/emme2ban", file0, file1$global["mcent"], file1$global["mmat"], mat.dir, newname="test", newdesc="test matrix ... [TRUNCATED]
          link.data <- read.link.data("emme2/emme2ban", 1, file0, file1$global["mscen"], file1$global["mlink"], file1$global["mnode"])
          nodes <- read.nodes("emme2/emme2ban", 1, file0, file1$global["mscen"], file1$global["mlink"], file1$global["mnode"])

These lines will be truncated in the PDF manual.
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    data   2.0Mb
    libs   3.3Mb
Found the following apparent S3 methods exported but not registered:
  summary.fmmst summary.fmmt
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
File ‘EMMIXuskew/libs/EMMIXuskew.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
nondominated_ordering: no visible binding for global variable ‘par’
rsbxbeta: no visible global function definition for ‘runif’
Undefined global functions or variables:
  par runif
Consider adding
  importFrom("graphics", "par")
  importFrom("stats", "runif")
to your NAMESPACE file.
File ‘emoa/libs/emoa.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    emoji_fonts   6.5Mb
empiricalFDR: no visible global function definition for ‘axis’
empiricalFDR: no visible global function definition for ‘loess’
empiricalFDR: no visible global function definition for ‘predict’
empiricalFDR: no visible global function definition for ‘lines’
empiricalFDR: no visible global function definition for ‘abline’
fdrBiCurve: no visible global function definition for ‘plot’
fdrBiCurve: no visible global function definition for ‘axis’
fdrBiCurve: no visible global function definition for ‘lines’
fdrBiCurve: no visible global function definition for ‘abline’
fdrBiCurve: no visible global function definition for ‘legend’
simulateCounts: no visible global function definition for
  ‘txtProgressBar’
simulateCounts: no visible global function definition for
  ‘setTxtProgressBar’
simulateCounts: no visible global function definition for ‘rnorm’
simulateCounts: no visible global function definition for ‘hist’
simulateCounts: no visible global function definition for ‘colData’
Undefined global functions or variables:
  abline axis colData hist legend lines loess plot predict rnorm
  setTxtProgressBar txtProgressBar
Consider adding
  importFrom("graphics", "abline", "axis", "hist", "legend", "lines",
             "plot")
  importFrom("stats", "loess", "predict", "rnorm")
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
Note: found 23639 marked Latin-1 strings
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    lib    3.5Mb
    libs   1.1Mb
Namespace in Imports field not imported from: ‘RcppMLPACK’
  All declared Imports should be used.
File ‘endogMNP/libs/endogMNP.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'library' or 'require' call to ‘RColorBrewer’ which was already attached by Depends.
  Please remove these calls from your code.
'library' or 'require' calls in package code:
  ‘Rcmdr’ ‘gWidgets’ ‘gWidgetstcltk’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
  ‘Hmisc’ ‘RColorBrewer’ ‘vcd’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Rd file 'mosaicPermDialog.Rd':
  \usage lines wider than 90 characters:
                                                             displayPermCommand=TRUE, extendedOptions=TRUE)
     setMosaicPalette(palettename,reverse=FALSE)                                                     

These lines will be truncated in the PDF manual.
File ‘EntropyEstimation/libs/EntropyEstimation.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘BiocParallel’ ‘broom’ ‘reshape2’ ‘rmarkdown’
  All declared Imports should be used.
File ‘enviPat/libs/enviPat.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘enviPick/libs/enviPick.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘EnviroStat/libs/EnviroStat.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Running ‘testthat.R’ [43s/48s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(envnames)
  > 
  > test_check("envnames")
  
  Environments involved:
  Current environment: <environment: R_GlobalEnv>
  Parent environment of env1: <environment: R_GlobalEnv>
  Parent environment of env2: <environment: R_GlobalEnv>
  Parent environment of env11: <environment: 0x5adf038>
  R_GlobalEnv env_of_envs       envir 
       "env2"      "env2"      "env2" 
  correct memory address: <0x92b3818> 
  observed result: FALSE 
  ── 1. Failure: T21) is_memory_address(): a string obtained as the memory address
  `observed` not equal to `expected`.
  1 element mismatch
  
  Now inside function g 
  Environment name of calling function (using environmentName() function):  ""
  Environment name of calling function as returned by get_fun_calling(): env1$f
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 265 SKIPPED: 14 FAILED: 1
  1. Failure: T21) is_memory_address(): a string obtained as the memory address of an object is identified as a valid memory address (@test-functions.r#109) 
  
  Error: testthat unit tests failed
  Execution halted
installed size is  9.7Mb
  sub-directories of 1Mb or more:
    R      2.3Mb
    doc    3.3Mb
    help   3.4Mb
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   4.3Mb
Namespaces in Imports field not imported from:
  ‘MASS’ ‘Matrix’ ‘ROCR’ ‘c060’ ‘methods’ ‘utils’
  All declared Imports should be used.
plot.eb: no visible global function definition for ‘plot’
plot.eb : <anonymous>: no visible global function definition for
  ‘lines’
plot.ebhistorical: no visible global function definition for ‘palette’
plot.ebhistorical: no visible global function definition for ‘dev.new’
plot.ebhistorical: no visible global function definition for ‘par’
plot.ebhistorical: no visible global function definition for
  ‘topo.colors’
plot.ebhistorical: no visible global function definition for ‘plot’
plot.ebhistorical: no visible global function definition for ‘curve’
plot.ebhistorical: no visible global function definition for ‘lines’
plot.ebhistoricalsummary: no visible global function definition for
  ‘topo.colors’
plot.ebhistoricalsummary: no visible global function definition for
  ‘dev.new’
plot.ebhistoricalsummary: no visible global function definition for
  ‘plot’
plot.ebhistoricalsummary: no visible global function definition for
  ‘axis’
plot.ebhistoricalsummary: no visible global function definition for
  ‘lines’
plot.ebhistoricalsummary: no visible global function definition for
  ‘legend’
Undefined global functions or variables:
  axis curve dev.new legend lines palette par plot topo.colors
Consider adding
  importFrom("grDevices", "dev.new", "palette", "topo.colors")
  importFrom("graphics", "axis", "curve", "legend", "lines", "par",
             "plot")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘colorspace’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘extrafont’ ‘graphics’ ‘knitr’ ‘rmarkdown’ ‘utils’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DT’ ‘ggplot2’ ‘knitr’ ‘pander’
  All declared Imports should be used.
Found the following significant warnings:
  motor_param.cpp:257:5: warning: explicitly assigning value of variable of type 'arma::vec' (aka 'Col<double>') to itself [-Wself-assign-overloaded]
See ‘/data/gannet/ripley/R/packages/tests-clang/episode.Rcheck/00install.out’ for details.
installed size is 14.0Mb
  sub-directories of 1Mb or more:
    libs  13.6Mb
plot.episplineDensity: no visible global function definition for ‘plot’
plot.episplineDensity: no visible global function definition for
  ‘points’
postproc: no visible global function definition for ‘plot’
postproc: no visible global function definition for ‘points’
preprocess.data: no visible global function definition for ‘sd’
Undefined global functions or variables:
  plot points sd
Consider adding
  importFrom("graphics", "plot", "points")
  importFrom("stats", "sd")
to your NAMESPACE file.
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘testthat’ ‘tidyr’
  All declared Imports should be used.
.getFactor: no visible global function definition for ‘integrate’
check.cumulants: no visible global function definition for ‘runif’
edgeworth: no visible global function definition for ‘dnorm’
eql : getEQL: no visible binding for global variable ‘glm’
eql: no visible global function definition for ‘splinefun’
eql: no visible binding for global variable ‘glm’
eql : <anonymous>: no visible global function definition for ‘glm’
plot.approximation: no visible global function definition for ‘mtext’
plot.eql: no visible global function definition for ‘points’
plot.eql: no visible global function definition for ‘par’
plot.eql: no visible global function definition for ‘segments’
plot.eql: no visible global function definition for ‘qchisq’
plot.eql: no visible global function definition for ‘text’
plot.eql: no visible global function definition for ‘abline’
plot.eql : eql.panel: no visible global function definition for
  ‘qchisq’
plot.eql: no visible global function definition for ‘colorRampPalette’
plot.eql: no visible global function definition for ‘heat.colors’
varianceFamily : devf : <anonymous>: no visible global function
  definition for ‘integrate’
varianceFamily: no visible global function definition for ‘make.link’
Undefined global functions or variables:
  abline colorRampPalette dnorm glm heat.colors integrate make.link
  mtext par points qchisq runif segments splinefun text
Consider adding
  importFrom("grDevices", "colorRampPalette", "heat.colors")
  importFrom("graphics", "abline", "mtext", "par", "points", "segments",
             "text")
  importFrom("stats", "dnorm", "glm", "integrate", "make.link", "qchisq",
             "runif", "splinefun")
to your NAMESPACE file.
eqs2lavaan: no visible global function definition for ‘ignore.case’
eqs2lavaan: no visible global function definition for ‘str_join’
eqs2lavaan: no visible binding for global variable ‘r’
eqsCorr: no visible global function definition for ‘cov2cor’
plotCov: no visible global function definition for ‘cov2cor’
plotCov: no visible global function definition for ‘par’
plotCov: no visible global function definition for ‘image’
plotCov: no visible global function definition for ‘axis’
Undefined global functions or variables:
  axis cov2cor ignore.case image par r str_join
Consider adding
  importFrom("graphics", "axis", "image", "par")
  importFrom("stats", "cov2cor")
to your NAMESPACE file.
'library' or 'require' call to ‘qtl’ which was already attached by Depends.
  Please remove these calls from your code.
Unexported objects imported by ':::' calls:
  ‘qtl:::c.scanone’ ‘qtl:::plot.scanone’
  See the note in ?`:::` about the use of this operator.
Found the following significant warnings:
  utilities.c:175:32: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
See ‘/data/gannet/ripley/R/packages/tests-clang/Equalden.HD.Rcheck/00install.out’ for details.
File ‘equivalence/libs/equivalence.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘erboost/libs/erboost.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following apparent S3 methods exported but not registered:
  coef.length.model plot.mcmc.list.ergm plot.network.ergm
  summary.statistics
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Namespace in Imports field not imported from: ‘signal’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘searcher’
  All declared Imports should be used.
ESA: no visible binding for global variable ‘var’
plot.esabcv: no visible global function definition for ‘plot’
plot.esabcv: no visible global function definition for ‘points’
plot.esabcv: no visible global function definition for ‘axis’
plot.esabcv: no visible global function definition for ‘title’
Undefined global functions or variables:
  axis plot points title var
Consider adding
  importFrom("graphics", "axis", "plot", "points", "title")
  importFrom("stats", "var")
to your NAMESPACE file.
File ‘esaddle/libs/esaddle.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
ESEA.Main: no visible global function definition for ‘rnorm’
ESEA.Main: no visible global function definition for ‘sd’
ESEA.Main: no visible global function definition for ‘p.adjust’
PlotGlobEdgeCorProfile: no visible global function definition for
  ‘plot’
PlotGlobEdgeCorProfile: no visible global function definition for
  ‘lines’
PlotGlobEdgeCorProfile: no visible global function definition for
  ‘colors’
PlotGlobEdgeCorProfile: no visible global function definition for
  ‘points’
PlotGlobEdgeCorProfile: no visible global function definition for
  ‘legend’
PlotGlobEdgeCorProfile: no visible global function definition for
  ‘text’
PlotPathwayGraph: no visible global function definition for ‘par’
PlotPathwayGraph: no visible global function definition for ‘plot’
PlotRunEnrichment: no visible global function definition for ‘plot’
PlotRunEnrichment: no visible global function definition for ‘lines’
PlotRunEnrichment: no visible global function definition for ‘colors’
PlotRunEnrichment: no visible global function definition for ‘text’
SavePathway2File: no visible global function definition for ‘is’
calEdgeCorScore: no visible global function definition for ‘na.omit’
Undefined global functions or variables:
  colors is legend lines na.omit p.adjust par plot points rnorm sd text
Consider adding
  importFrom("grDevices", "colors")
  importFrom("graphics", "legend", "lines", "par", "plot", "points",
             "text")
  importFrom("methods", "is")
  importFrom("stats", "na.omit", "p.adjust", "rnorm", "sd")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
File ‘ESGtoolkit/libs/ESGtoolkit.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘EstHer/libs/EstHer.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 28.7Mb
  sub-directories of 1Mb or more:
    libs  28.4Mb
Packages in Depends field not imported from:
  ‘Hmisc’ ‘xtable’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
corr_p_cell: no visible global function definition for ‘cov.wt’
iqr_cell: no visible global function definition for ‘quantile’
iqr_cell: no visible global function definition for ‘wtd.quantile’
mean_sd_cell: no visible global function definition for ‘wtd.mean’
mean_sd_cell: no visible global function definition for ‘wtd.var’
mode_cell: no visible global function definition for ‘wtd.table’
quantile_cell: no visible global function definition for ‘wtd.quantile’
quantile_cell: no visible global function definition for ‘quantile’
stat_cell: no visible global function definition for ‘quantile’
stat_cell: no visible global function definition for ‘wtd.quantile’
stat_cell: no visible global function definition for ‘wtd.mean’
stat_cell: no visible global function definition for ‘wtd.var’
stat_cell: no visible global function definition for ‘mad’
stat_cell: no visible global function definition for ‘wtd.table’
Undefined global functions or variables:
  cov.wt mad quantile wtd.mean wtd.quantile wtd.table wtd.var
Consider adding
  importFrom("stats", "cov.wt", "mad", "quantile")
to your NAMESPACE file.
File ‘etasFLP/libs/etasFLP.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
etc.diff: no visible global function definition for ‘model.frame’
etc.diff: no visible binding for global variable ‘sd’
etc.diff: no visible global function definition for ‘qt’
etc.diff: no visible global function definition for ‘pt’
etc.diff: no visible global function definition for ‘wilcox.test’
etc.rat: no visible global function definition for ‘model.frame’
etc.rat: no visible binding for global variable ‘sd’
etc.rat: no visible global function definition for ‘qt’
etc.rat: no visible global function definition for ‘pt’
Undefined global functions or variables:
  model.frame pt qt sd wilcox.test
Consider adding
  importFrom("stats", "model.frame", "pt", "qt", "sd", "wilcox.test")
to your NAMESPACE file.
Namespaces in Imports field not imported from:
  ‘devtools’ ‘msm’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘EnvStats’
  All declared Imports should be used.
mposterior: no visible global function definition for ‘optim’
rl.pred: no visible global function definition for ‘matplot’
rl.pst: no visible binding for global variable ‘quantile’
rl.pst: no visible global function definition for ‘matplot’
Undefined global functions or variables:
  matplot optim quantile
Consider adding
  importFrom("graphics", "matplot")
  importFrom("stats", "optim", "quantile")
to your NAMESPACE file.
File ‘evdbayes/libs/evdbayes.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.6Mb
  sub-directories of 1Mb or more:
    doc   5.8Mb
Namespaces in Imports field not imported from:
  ‘curl’ ‘openxlsx’ ‘stringr’
  All declared Imports should be used.
File ‘evolqg/libs/evolqg.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
DPOT: no visible global function definition for ‘optim’
mop.rho: no visible global function definition for ‘median’
Undefined global functions or variables:
  median optim
Consider adding
  importFrom("stats", "median", "optim")
to your NAMESPACE file.
Namespaces in Imports field not imported from:
  ‘eva’ ‘evir’ ‘testthat’
  All declared Imports should be used.
build.mcx.obj: no visible global function definition for ‘glm’
build.mcx.obj: no visible binding for global variable ‘poisson’
build.mcx.obj: no visible global function definition for ‘fitted’
cab: no visible global function definition for ‘rbinom’
cab: no visible global function definition for ‘runif’
mcexact: no visible global function definition for ‘update’
rounded.tprob: no visible global function definition for ‘pt’
simtable.cab: no visible global function definition for ‘rbinom’
simtable.cab: no visible global function definition for ‘runif’
Undefined global functions or variables:
  fitted glm poisson pt rbinom runif update
Consider adding
  importFrom("stats", "fitted", "glm", "poisson", "pt", "rbinom",
             "runif", "update")
to your NAMESPACE file.
File ‘exactLoglinTest/libs/exactLoglinTest.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
plot.pgrid: no visible global function definition for ‘image’
statistic.cv: no visible global function definition for ‘quantile’
statistic.sim: no visible global function definition for ‘contourLines’
Undefined global functions or variables:
  contourLines image quantile
Consider adding
  importFrom("grDevices", "contourLines")
  importFrom("graphics", "image")
  importFrom("stats", "quantile")
to your NAMESPACE file.
File ‘exif/libs/exif.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Running ‘testthat.R’ [39s/40s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(exifr)
  Using ExifTool version 11.11
  > 
  > test_check("exifr")
    % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                   Dload  Upload   Total   Spent    Left  Speed
  
    0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  100 2850k  100 2850k    0     0  15.3M      0 --:--:-- --:--:-- --:--:-- 15.3M
  ── 1. Failure: exiftool install works properly (@test_utils.R#24)  ─────────────
  exiftool_version() not equal to 11.1.
  1/1 mismatches
  [1] 11.2 - 11.1 == 0.12
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 39 SKIPPED: 1 FAILED: 1
  1. Failure: exiftool install works properly (@test_utils.R#24) 
  
  Error: testthat unit tests failed
  Execution halted
countBamInGRanges.exomeDepth: no visible global function definition for
  ‘as’
Undefined global functions or variables:
  as
Consider adding
  importFrom("methods", "as")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
File ‘ExomeDepth/libs/ExomeDepth.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘polynom’
  All declared Imports should be used.
print.cdf : numform: warning in formatC(x, dig = digits): partial
  argument match of 'dig' to 'digits'
print.cdf: warning in get("x", env = environment(x)): partial argument
  match of 'env' to 'envir'
print.cdf: warning in get("y", env = environment(x)): partial argument
  match of 'env' to 'envir'
print.ogive : numform: warning in formatC(x, dig = digits): partial
  argument match of 'dig' to 'digits'
print.ogive: warning in get("x", env = environment(x)): partial
  argument match of 'env' to 'envir'
print.ogive: warning in get("y", env = environment(x)): partial
  argument match of 'env' to 'envir'
quantile.expert: warning in formatC(paste(100 * probs, "%", sep = ""),
  format = "fg", wid = 1, digits = dig): partial argument match of
  'wid' to 'width'
MS: no visible global function definition for ‘tail’
Undefined global functions or variables:
  tail
Consider adding
  importFrom("utils", "tail")
to your NAMESPACE file.
Packages in Depends field not imported from:
  ‘ape’ ‘deSolve’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
expoTree.optim: no visible global function definition for ‘optim’
node.age: no visible global function definition for ‘is.binary.tree’
node.age: no visible global function definition for ‘multi2di’
plotLTT: no visible global function definition for ‘rgb’
plotLTT: no visible global function definition for ‘par’
plotLTT: no visible global function definition for ‘lines’
plotLTT: no visible global function definition for ‘axis’
plotLTT: no visible global function definition for ‘mtext’
Undefined global functions or variables:
  axis is.binary.tree lines mtext multi2di optim par rgb
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("graphics", "axis", "lines", "mtext", "par")
  importFrom("stats", "optim")
to your NAMESPACE file.
File ‘expoTree/libs/expoTree.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
index.citations: no visible global function definition for
  ‘txtProgressBar’
read.exsic: no visible global function definition for ‘read.csv’
update.pb: no visible global function definition for
  ‘setTxtProgressBar’
Undefined global functions or variables:
  read.csv setTxtProgressBar txtProgressBar
Consider adding
  importFrom("utils", "read.csv", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
installed size is 14.1Mb
  sub-directories of 1Mb or more:
    libs  13.7Mb
toJavaMatrix2D: no visible global function definition for ‘is’
Undefined global functions or variables:
  is
Consider adding
  importFrom("methods", "is")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
File ‘extremis/libs/extremis.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
bootstrapCMLE: no visible global function definition for ‘qweibull’
bootstrapCMLE: no visible binding for global variable ‘sd’
bootstrapCMLE: no visible global function definition for ‘quantile’
bootstrapCenWbMix: no visible binding for global variable ‘sd’
bootstrapCenWbMix: no visible global function definition for ‘quantile’
cenWeibullMLE: no visible global function definition for ‘sd’
expmx.p2.censor: no visible global function definition for ‘dweibull’
expmx.p2.censor: no visible global function definition for ‘pweibull’
genWbMixIni: no visible global function definition for ‘runif’
log.llh.p2.censor: no visible global function definition for ‘dweibull’
log.llh.p2.censor: no visible global function definition for ‘pweibull’
quanWbMix : t.fun: no visible global function definition for ‘pweibull’
quanWbMix: no visible global function definition for ‘uniroot’
quanWbMix.int : t.fun: no visible global function definition for
  ‘pweibull’
quanWbMix.int: no visible global function definition for ‘uniroot’
simWbMix: no visible global function definition for ‘rbinom’
simWbMix: no visible global function definition for ‘rweibull’
Undefined global functions or variables:
  dweibull pweibull quantile qweibull rbinom runif rweibull sd uniroot
Consider adding
  importFrom("stats", "dweibull", "pweibull", "quantile", "qweibull",
             "rbinom", "runif", "rweibull", "sd", "uniroot")
to your NAMESPACE file.
File ‘extWeibQuant/libs/extWeibQuant.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘ezglm/libs/ezglm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
createFormula: no visible global function definition for ‘tail’
createFormula: no visible global function definition for ‘head’
createFormula: no visible global function definition for ‘as.formula’
ezsim: no visible global function definition for ‘runif’
plot.ezsim: no visible global function definition for ‘quantile’
plot.ezsim: no visible global function definition for ‘head’
plot.ezsim: no visible global function definition for ‘tail’
plot.ezsim: no visible global function definition for ‘plot’
plot.ezsim: no visible binding for global variable ‘dnorm’
plot.ezsim: no visible binding for global variable ‘pdf’
plot.ezsim: no visible global function definition for ‘dev.off’
plot.ezsim : <anonymous>: no visible global function definition for
  ‘dev.new’
plot.summary.ezsim: no visible global function definition for ‘head’
plot.summary.ezsim: no visible global function definition for ‘tail’
plot.summary.ezsim: no visible binding for global variable ‘pdf’
plot.summary.ezsim: no visible global function definition for ‘dev.off’
plot.summary.ezsim : <anonymous>: no visible global function definition
  for ‘dev.new’
Undefined global functions or variables:
  as.formula dev.new dev.off dnorm head pdf plot quantile runif tail
Consider adding
  importFrom("grDevices", "dev.new", "dev.off", "pdf")
  importFrom("graphics", "plot")
  importFrom("stats", "as.formula", "dnorm", "quantile", "runif")
  importFrom("utils", "head", "tail")
to your NAMESPACE file.
Namespaces in Imports field not imported from:
  ‘doParallel’ ‘mlbench’ ‘parallel’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘refund’
  All declared Imports should be used.
gibbs2: no visible global function definition for ‘rnorm’
gibbs_sampling: no visible global function definition for ‘rnorm’
Undefined global functions or variables:
  rnorm
Consider adding
  importFrom("stats", "rnorm")
to your NAMESPACE file.
fma: no visible global function definition for ‘factanal’
fma: no visible global function definition for ‘runif’
fma: no visible global function definition for ‘kmeans’
fma: no visible global function definition for ‘var’
fma.em.alg: no visible global function definition for ‘var’
misc : q: no visible global function definition for ‘name’
Undefined global functions or variables:
  factanal kmeans name runif var
Consider adding
  importFrom("stats", "factanal", "kmeans", "runif", "var")
to your NAMESPACE file.
Rd file 'fma.Rd':
  \usage lines wider than 90 characters:
     fma(y, k, r, x.z = NULL, x.w = NULL, it = 15, eps = 1e-04, seed = 4, scaling = FALSE, init = NULL)

These lines will be truncated in the PDF manual.
File ‘factorcpt/libs/factorcpt.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘forcats’ ‘formula.tools’
  All declared Imports should be used.
File ‘factorQR/libs/factorQR.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘factorstochvol/libs/factorstochvol.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Packages in Depends field not imported from:
  ‘RCurl’ ‘RJSONIO’ ‘methods’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
createFactualConnection: no visible global function definition for
  ‘new’
factualGetSchema: no visible global function definition for ‘fromJSON’
factualRead: no visible global function definition for ‘curlEscape’
factualRead: no visible global function definition for ‘fromJSON’
processFactualReadJSON: no visible global function definition for ‘new’
processFactualSchemaJSON: no visible global function definition for
  ‘new’
Undefined global functions or variables:
  curlEscape fromJSON new
Consider adding
  importFrom("methods", "new")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Rd file 'factualR.Rd':
  \usage lines wider than 90 characters:
     factualRead(connection , tableID , sort = NULL , limit = NULL , offset = NULL , filters = NULL , subject_key = NULL , reformatNames , v ... [TRUNCATED]

These lines will be truncated in the PDF manual.
Namespace in Imports field not imported from: ‘pkgbuild’
  All declared Imports should be used.
File ‘falcon/libs/falcon.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘fame/R/windows/zzz.R’:
  .onLoad calls:
    packageStartupMessage("FAME environment variable not set; assuming ",     defaultDir)
    packageStartupMessage("FAME directory ", fameDir, " not found.\n",     "If you have FAME installed, specify it's location ", "via the FAME environment variable.\n",     "Otherwise, this package is pretty useless.\n")

See section ‘Good practice’ in '?.onAttach'.
File ‘fame/libs/fame.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘Familias/libs/Familias.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
coef.FAMILY: no visible global function definition for ‘glm’
coef.FAMILY: no visible global function definition for ‘lm’
fm2v: no visible global function definition for ‘na.omit’
l_inf_prox: no visible global function definition for ‘tail’
predict.FAMILY: no visible global function definition for ‘coef’
predict.FAMILY: no visible global function definition for ‘lm’
predict.FAMILY: no visible global function definition for ‘predict’
predict.FAMILY: no visible global function definition for ‘glm’
predict.FAMILY: no visible global function definition for ‘predict.glm’
v2fm: no visible global function definition for ‘tail’
Undefined global functions or variables:
  coef glm lm na.omit predict predict.glm tail
Consider adding
  importFrom("stats", "coef", "glm", "lm", "na.omit", "predict",
             "predict.glm")
  importFrom("utils", "tail")
to your NAMESPACE file.
Packages in Depends field not imported from:
  ‘impute’ ‘mnormt’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
File ‘fanc/libs/fanc.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Aggregation : foo: no visible global function definition for
  ‘weighted.mean’
Aggregation: no visible global function definition for ‘txtProgressBar’
Aggregation: no visible global function definition for
  ‘setTxtProgressBar’
constructSYB: no visible global function definition for ‘str’
fillCountryCode: no visible global function definition for ‘na.omit’
getFAO: no visible global function definition for ‘read.csv’
getWDImetaData: no visible global function definition for ‘write.csv’
getWDItoSYB: no visible global function definition for ‘na.omit’
lsgr: no visible global function definition for ‘na.omit’
lsgr: no visible global function definition for ‘coef’
lsgr: no visible global function definition for ‘lm’
Undefined global functions or variables:
  coef lm na.omit read.csv setTxtProgressBar str txtProgressBar
  weighted.mean write.csv
Consider adding
  importFrom("stats", "coef", "lm", "na.omit", "weighted.mean")
  importFrom("utils", "read.csv", "setTxtProgressBar", "str",
             "txtProgressBar", "write.csv")
to your NAMESPACE file.
File ‘farff/libs/farff.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘far/libs/far.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘fAsianOptions/libs/fAsianOptions.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘fastAdaboost/libs/fastAdaboost.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘FastBandChol/libs/FastBandChol.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘fastclime/libs/fastclime.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘fastcmh/libs/fastcmh.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘fastdigest/libs/fastdigest.so’:
  Found no call to: ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    data   3.1Mb
    libs   2.0Mb
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    libs   6.3Mb
File ‘FastGP/libs/FastGP.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 18.4Mb
  sub-directories of 1Mb or more:
    data   1.3Mb
    libs  16.9Mb
src/Makevars: SHLIB_OPENMP_CXXFLAGS is included in PKG_LIBS but not in PKG_CXXFLAGS
  src/Makevars: it is not portable to include SHLIB_OPENMP_*' macros in PKG_CPPFLAGS
Use of these macros is discussed in sect 1.2.1.1 of ‘Writing R
Extensions’. The macros for different languages may differ so the
matching macro must be used in PKG_CXXFLAGS (etc) and match that used
in PKG_LIBS (except for Fortran: see the manual).
PKG_CPPFLAGS is used for both C and C++ code so it is not portable to
use it for these macros.
basis_hica: no visible global function definition for ‘princomp’
energy_hica: no visible global function definition for ‘dev.new’
energy_hica: no visible global function definition for ‘points’
energy_hica: no visible global function definition for ‘legend’
Undefined global functions or variables:
  dev.new legend points princomp
Consider adding
  importFrom("grDevices", "dev.new")
  importFrom("graphics", "legend", "points")
  importFrom("stats", "princomp")
to your NAMESPACE file.
installed size is  7.4Mb
  sub-directories of 1Mb or more:
    data   4.8Mb
    libs   2.2Mb
Namespace in Imports field not imported from: ‘rgdal’
  All declared Imports should be used.
File ‘fastmatch/libs/fastmatch.so’:
  Found non-API call to R: ‘match5’
File ‘fastmatch/libs/fastmatch.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

Compiled code should not call non-API entry points in R.
It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  9.2Mb
  sub-directories of 1Mb or more:
    libs   9.1Mb
installed size is 19.7Mb
  sub-directories of 1Mb or more:
    libs  19.6Mb
Found the following significant warnings:
  Rconnection.h:202:12: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
  Rconnection.h:205:12: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
  Rconnection.cc:53:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
See ‘/data/gannet/ripley/R/packages/tests-clang/FastRWeb.Rcheck/00install.out’ for details.
.run: no visible binding for global variable ‘init’
.run: no visible global function definition for ‘init’
.run: no visible binding for global variable ‘run’
Undefined global functions or variables:
  init run
Note: information on .o files is not available
File ‘FastRWeb/libs/null.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘fastSOM/libs/fastSOM.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘fasttime/libs/fasttime.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘whisker’
  All declared Imports should be used.
File ‘fBasics/libs/fBasics.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    data   3.5Mb
    libs   1.7Mb
File ‘FBFsearch/libs/FBFsearch.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'library' or 'require' calls in package code:
  ‘RCurl’ ‘RJSONIO’ ‘XML’ ‘glmnet’ ‘httr’ ‘speedglm’ ‘tcltk’ ‘xtable’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
File ‘fbroc/libs/fbroc.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Packages in Depends field not imported from:
  ‘MASS’ ‘combinat’ ‘glmnet’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
fcd.cluster: no visible global function definition for ‘kmeans’
fcd.start: no visible global function definition for ‘ginv’
fcd.start: no visible global function definition for ‘glmnet’
gen.dcbm: no visible global function definition for ‘rbinom’
gen.sbm: no visible global function definition for ‘rbinom’
mis.cluster: no visible global function definition for ‘permn’
spectral.clustering: no visible global function definition for ‘kmeans’
Undefined global functions or variables:
  ginv glmnet kmeans permn rbinom
Consider adding
  importFrom("stats", "kmeans", "rbinom")
to your NAMESPACE file.
PTSingleAssetBarrierOption2: no visible global function definition for
  ‘new’
newton: no visible global function definition for ‘plot’
newton: no visible global function definition for ‘abline’
probInRange: no visible global function definition for ‘pnorm’
shortfall_risk: no visible global function definition for ‘pnorm’
Undefined global functions or variables:
  abline new plot pnorm
Consider adding
  importFrom("graphics", "abline", "plot")
  importFrom("methods", "new")
  importFrom("stats", "pnorm")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
installed size is  9.5Mb
  sub-directories of 1Mb or more:
    libs   8.9Mb
Found the following significant warnings:

  Warning: 'rBind' is deprecated.
  Warning: 'cBind' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
installed size is  8.3Mb
  sub-directories of 1Mb or more:
    libs   8.2Mb
installed size is 57.6Mb
  sub-directories of 1Mb or more:
    doc    2.4Mb
    libs  54.5Mb
installed size is 23.8Mb
  sub-directories of 1Mb or more:
    libs  23.4Mb
File ‘fdaPDE/libs/fdaPDE.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 10.2Mb
  sub-directories of 1Mb or more:
    data   2.3Mb
    libs   7.4Mb
asymp.vcov: no visible global function definition for ‘cov’
corFDG: no visible global function definition for ‘cor’
g.exponential: no visible global function definition for ‘integrate’
rho.exponential: no visible global function definition for ‘integrate’
rho.sinus: no visible global function definition for ‘integrate’
tau.exponential: no visible global function definition for ‘integrate’
tau.sinus: no visible global function definition for ‘integrate’
tfun.sinus.rho: no visible global function definition for ‘integrate’
wlsdc: no visible global function definition for ‘optim’
Undefined global functions or variables:
  cor cov integrate optim
Consider adding
  importFrom("stats", "cor", "cov", "integrate", "optim")
to your NAMESPACE file.
File ‘FDGcopulas/libs/FDGcopulas.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘FD/libs/FD.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
FDRreg: no visible global function definition for ‘dnorm’
colnormalize: no visible global function definition for ‘sd’
efron: no visible global function definition for ‘median’
efron: no visible global function definition for ‘hist’
efron: no visible global function definition for ‘glm’
efron: no visible binding for global variable ‘poisson’
efron: no visible global function definition for ‘qchisq’
efron: no visible global function definition for ‘predict’
efron: no visible global function definition for ‘quantile’
efron: no visible global function definition for ‘lm’
efron: no visible global function definition for ‘coef’
make.bspline.matrix: no visible global function definition for
  ‘quantile’
plotFDR: no visible global function definition for ‘hist’
plotFDR: no visible global function definition for ‘par’
plotFDR: no visible global function definition for ‘plot’
plotFDR: no visible global function definition for ‘axis’
plotFDR: no visible global function definition for ‘lines’
plotFDR: no visible global function definition for ‘legend’
plotFDR: no visible global function definition for ‘rug’
plotFDR: no visible global function definition for ‘title’
Undefined global functions or variables:
  axis coef dnorm glm hist legend lines lm median par plot poisson
  predict qchisq quantile rug sd title
Consider adding
  importFrom("graphics", "axis", "hist", "legend", "lines", "par",
             "plot", "rug", "title")
  importFrom("stats", "coef", "dnorm", "glm", "lm", "median", "poisson",
             "predict", "qchisq", "quantile", "sd")
to your NAMESPACE file.
File ‘FDRreg/libs/FDRreg.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘fdrtool/libs/fdrtool.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘feather/libs/feather.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘fechner/libs/fechner.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following apparent S3 methods exported but not registered:
  print.express.certificate
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
File ‘FFD/libs/FFD.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘ff/libs/ff.so’:
  Found no call to: ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 10.7Mb
  sub-directories of 1Mb or more:
    libs  10.2Mb
installed size is  5.9Mb
  sub-directories of 1Mb or more:
    doc   4.6Mb
Namespace in Imports field not imported from: ‘pROC’
  All declared Imports should be used.
Found the following apparent S3 methods exported but not registered:
  .plot.garch.1 .plot.garch.10 .plot.garch.11 .plot.garch.12
  .plot.garch.13 .plot.garch.2 .plot.garch.3 .plot.garch.4
  .plot.garch.5 .plot.garch.6 .plot.garch.7 .plot.garch.8 .plot.garch.9
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
File ‘fGarch/libs/fGarch.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Packages in Depends field not imported from:
  ‘mvtnorm’ ‘numDeriv’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
dmymvnorm: no visible global function definition for ‘dmvnorm’
dmymvt: no visible global function definition for ‘dmvt’
gof.test: no visible global function definition for ‘quantile’
gof.test : ecdf: no visible global function definition for ‘mecdf’
gof.test: no visible global function definition for ‘jacobian’
gof.test: no visible global function definition for ‘var’
gradCdfT: no visible global function definition for ‘dt’
gradCdfT: no visible global function definition for ‘pt’
gradCdfT: no visible global function definition for ‘pmvt’
influFun: no visible global function definition for ‘jacobian’
mult.sim: no visible global function definition for ‘rnorm’
plackettFormula: no visible global function definition for ‘pt’
plackettFormula: no visible global function definition for ‘pmvt’
pmymvnorm: no visible global function definition for ‘GenzBretz’
pmymvnorm: no visible global function definition for ‘TVPACK’
pmymvnorm : <anonymous>: no visible global function definition for
  ‘pmvnorm’
pmymvt: no visible global function definition for ‘GenzBretz’
pmymvt: no visible global function definition for ‘TVPACK’
pmymvt : <anonymous>: no visible global function definition for ‘pmvt’
rmymvnorm: no visible global function definition for ‘rmvnorm’
rmymvt: no visible global function definition for ‘rmvt’
Undefined global functions or variables:
  GenzBretz TVPACK dmvnorm dmvt dt jacobian mecdf pmvnorm pmvt pt
  quantile rmvnorm rmvt rnorm var
Consider adding
  importFrom("stats", "dt", "pt", "quantile", "rnorm", "var")
to your NAMESPACE file.
File ‘FGSG/libs/FGSG.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘FIACH/libs/FIACH.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
fieldsim: no visible global function definition for ‘rnorm’
midpoint: no visible global function definition for ‘rnorm’
setAtlas_under: no visible global function definition for ‘runif’
setCovf_under : Ibeta: no visible global function definition for
  ‘pbeta’
visualize: no visible global function definition for ‘colorRampPalette’
Undefined global functions or variables:
  colorRampPalette pbeta rnorm runif
Consider adding
  importFrom("grDevices", "colorRampPalette")
  importFrom("stats", "pbeta", "rnorm", "runif")
to your NAMESPACE file.
Packages in Depends field not imported from:
  ‘RSQLite’ ‘methods’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
createSQLite: no visible global function definition for ‘dbDriver’
createSQLite: no visible global function definition for ‘dbConnect’
createSQLite: no visible global function definition for
  ‘dbUnloadDriver’
createSQLite: no visible global function definition for ‘dbGetQuery’
initializeSQLite: no visible global function definition for ‘dbDriver’
initializeSQLite: no visible global function definition for ‘dbConnect’
initializeSQLite: no visible global function definition for ‘new’
dbDelete,filehashSQLite-character: no visible global function
  definition for ‘dbGetQuery’
dbDisconnect,filehashSQLite: no visible global function definition for
  ‘dbUnloadDriver’
dbFetch,filehashSQLite-character: no visible global function definition
  for ‘dbGetQuery’
dbInsert,filehashSQLite-character: no visible global function
  definition for ‘dbGetQuery’
dbList,filehashSQLite: no visible global function definition for
  ‘dbGetQuery’
dbMultiFetch,filehashSQLite-character: no visible global function
  definition for ‘dbGetQuery’
Undefined global functions or variables:
  dbConnect dbDriver dbGetQuery dbUnloadDriver new
Consider adding
  importFrom("methods", "new")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Namespace in Imports field not imported from: ‘rappdirs’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘RcppProgress’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘mapproj’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘purrr’
  All declared Imports should be used.
lsmacof: no visible global function definition for ‘cmdscale’
plotInc: no visible global function definition for ‘rainbow’
plotInc: no visible global function definition for ‘plot’
prepareCalib: no visible global function definition for ‘lm’
Undefined global functions or variables:
  cmdscale lm plot rainbow
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "plot")
  importFrom("stats", "cmdscale", "lm")
to your NAMESPACE file.
File ‘FisHiCal/libs/FisHiCal.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘fishMod/libs/fishMod.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
fishmove : coefs: no visible global function definition for ‘coef’
fishmove : coefs: no visible global function definition for ‘pf’
fishmove: no visible global function definition for ‘lm’
fishmove: no visible global function definition for ‘predict.lm’
fishmove.estimate: no visible global function definition for ‘quantile’
fishmove.estimate : ddoublenorm: no visible global function definition
  for ‘dnorm’
fishmove.query: no visible global function definition for ‘hasArg’
fishmove.query : f: no visible global function definition for ‘pnorm’
fishmove.query: no visible global function definition for ‘uniroot’
pdk: no visible global function definition for ‘hasArg’
pdk : eq: no visible global function definition for ‘dnorm’
Undefined global functions or variables:
  coef dnorm hasArg lm pf pnorm predict.lm quantile uniroot
Consider adding
  importFrom("methods", "hasArg")
  importFrom("stats", "coef", "dnorm", "lm", "pf", "pnorm", "predict.lm",
             "quantile", "uniroot")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
'library' or 'require' calls to packages already attached by Depends:
  ‘RGtk2’ ‘cairoDevice’ ‘gWidgets’ ‘gWidgetsRGtk2’ ‘tcltk’ ‘tkrplot’
  Please remove these calls from your code.
Package in Depends field not imported from: ‘FitAR’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Found the following apparent S3 methods exported but not registered:
  fitted.FitARMA
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
FitARMA: no visible global function definition for ‘PacfDL’
FitARMA: no visible global function definition for ‘GetARMeanMLE’
FitARMA: no visible global function definition for
  ‘BackcastResidualsAR’
FitARMA: no visible global function definition for ‘acf’
FitARMA: no visible global function definition for ‘LjungBoxTest’
FitARMA: no visible global function definition for ‘tsp’
GetFitARMA: no visible global function definition for ‘LoglikelihoodAR’
GetFitARMA: no visible global function definition for ‘ChampernowneD’
GetFitARMA : EntropyARMA: no visible global function definition for
  ‘PacfToAR’
GetFitARMA : EntropyARMA: no visible global function definition for
  ‘PacfDL’
GetFitARMA : EntropyARMA: no visible global function definition for
  ‘FastLoglikelihoodAR’
GetFitARMA: no visible global function definition for ‘optim’
GetFitARMA: no visible global function definition for ‘PacfToAR’
InformationMatrixARMA: no visible global function definition for
  ‘InvertibleQ’
InformationMatrixARMA: no visible global function definition for
  ‘toeplitz’
SimulateGaussianARMA: no visible global function definition for ‘rnorm’
SimulateGaussianARMA: no visible global function definition for
  ‘toeplitz’
TacvfARMA: no visible global function definition for ‘InvertibleQ’
Undefined global functions or variables:
  BackcastResidualsAR ChampernowneD FastLoglikelihoodAR GetARMeanMLE
  InvertibleQ LjungBoxTest LoglikelihoodAR PacfDL PacfToAR acf optim
  rnorm toeplitz tsp
Consider adding
  importFrom("stats", "acf", "optim", "rnorm", "toeplitz", "tsp")
to your NAMESPACE file.
File ‘FitARMA/libs/FitARMA.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Package in Depends field not imported from: ‘bestglm’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Rd file 'GetLeapsAR.Rd':
  \usage lines wider than 90 characters:
     GetLeapsAR(z, lag.max = 15, Criterion = "UBIC", Best = 3, Candidates=5, t="default", ExactQ=FALSE)

Rd file 'PlotARSdf.Rd':
  \usage lines wider than 90 characters:
     PlotARSdf(phi = NULL, theta = NULL, units = "radial", logSdf = FALSE, InnovationVariance = 1, main = NULL, sub = NULL, lwd=3, col="blue ... [TRUNCATED]

Rd file 'SelectModel.Rd':
  \usage lines wider than 90 characters:
     SelectModel(z, lag.max = 15, ARModel = c("AR", "ARz", "ARp"), Criterion = "default", Best = 3, Candidates = 5, t="default")

Rd file 'UnitRootTest.Rd':
  \usage lines wider than 90 characters:
     UnitRootTest(z, method = c("MLE", "ExactMLE", "LS", "All"), statistic = c("Z", "T"), NumBoot = 1000, PValueMethod = c("DH", "ET"))

These lines will be truncated in the PDF manual.
File ‘FitAR/libs/FitAR.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  9.6Mb
  sub-directories of 1Mb or more:
    libs   8.7Mb
Namespaces in Imports field not imported from:
  ‘MASS’ ‘XML’ ‘gglasso’ ‘methods’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘rstudioapi’
  All declared Imports should be used.
installed size is  6.3Mb
  sub-directories of 1Mb or more:
    data   5.3Mb
File ‘flars/libs/flars.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘flashClust/libs/flashClust.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘rgdal’
  All declared Imports should be used.
Missing or unexported object: ‘ggmap::has_goog_key’
installed size is 11.7Mb
  sub-directories of 1Mb or more:
    libs  10.7Mb
File ‘flock/libs/flock.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.5Mb
  sub-directories of 1Mb or more:
    R   6.4Mb
Rd file 'flsa.Rd':
  \usage lines wider than 90 characters:
     flsa(y, lambda1=0, lambda2=NULL, connListObj = NULL, splitCheckSize=1e+09, verbose=FALSE, thr = 1e-09, maxGrpNum=4*length(y))
  \examples lines wider than 100 characters:
     ### therefore, res2Dim does not give out the solution as a 2 dimensional matrix (unlike the direct version above)

These lines will be truncated in the PDF manual.
File ‘flsa/libs/flsa.so’:
  Found no call to: ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 13.4Mb
  sub-directories of 1Mb or more:
    libs  13.1Mb
export: no visible global function definition for ‘write.table’
flux.odae : <anonymous>: no visible global function definition for
  ‘combn’
mf.flux: no visible global function definition for ‘runsd’
plot.fluss: no visible global function definition for ‘dev.new’
plot.fluss: no visible global function definition for ‘pdf’
plot.fluss: no visible global function definition for ‘dev.off’
plot.fluxes: no visible global function definition for ‘dev.new’
plot.fluxes: no visible global function definition for ‘devAskNewPage’
plot.fluxes: no visible global function definition for ‘pdf’
plot.fluxes: no visible global function definition for ‘dev.off’
plot.fluxxes: no visible global function definition for ‘dev.new’
plot.fluxxes: no visible global function definition for ‘devAskNewPage’
plot.fluxxes: no visible global function definition for ‘pdf’
plot.fluxxes: no visible global function definition for ‘dev.off’
reco.bulk : get.out: no visible global function definition for
  ‘boxplot.stats’
Undefined global functions or variables:
  boxplot.stats combn dev.new dev.off devAskNewPage pdf runsd
  write.table
Consider adding
  importFrom("grDevices", "boxplot.stats", "dev.new", "dev.off",
             "devAskNewPage", "pdf")
  importFrom("utils", "combn", "write.table")
to your NAMESPACE file.
Namespaces in Imports field not imported from:
  ‘stats’ ‘utils’
  All declared Imports should be used.
File ‘FME/libs/FME.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘fmri/libs/fmri.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘survival’
  All declared Imports should be used.
File ‘fmrs/libs/fmrs.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
BSOptionValue: no visible global function definition for ‘pnorm’
ImpliedVol: no visible global function definition for ‘uniroot’
callFMstable: no visible global function definition for ‘integrate’
fitGivenQuantile: no visible global function definition for ‘uniroot’
matchQuartiles: no visible global function definition for ‘optim’
putFMstable: no visible global function definition for ‘integrate’
standardStableQuantile: no visible global function definition for
  ‘qnorm’
tailsGstable: no visible global function definition for ‘integrate’
Undefined global functions or variables:
  integrate optim pnorm qnorm uniroot
Consider adding
  importFrom("stats", "integrate", "optim", "pnorm", "qnorm", "uniroot")
to your NAMESPACE file.
File ‘FMStable/libs/FMStable.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘fNonlinear/libs/fNonlinear.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    fonts   6.6Mb
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    fonts   6.1Mb
'library' or 'require' call to ‘rgl’ which was already attached by Depends.
  Please remove these calls from your code.
File ‘fOptions/libs/fOptions.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'library' or 'require' calls to packages already attached by Depends:
  ‘combinat’ ‘genetics’
  Please remove these calls from your code.
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
File ‘forensic/R/zzz.R’:
  .First.lib calls:
    cat("## Statistical Methods in Forensic Genetics \n")
    cat("## The work was supported by the project 1M06014 of the Ministry of \n        Education, Youth and Sports of the Czech Republic. \n")
    require(genetics, quietly = TRUE)
    require(combinat, quietly = TRUE)

Package startup functions should not change the search path.
Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
See section ‘Good practice’ in '?.onAttach'.
File ‘forensim/libs/forensim.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘covr’ ‘curl’ ‘graphics’ ‘htmltools’ ‘psych’ ‘rmarkdown’ ‘scales’
  All declared Imports should be used.
ForImp: no visible global function definition for ‘head’
ForImp: no visible global function definition for ‘tail’
ForImp: no visible global function definition for ‘dist’
medianimp: no visible global function definition for ‘quantile’
rancatmat: no visible global function definition for ‘runif’
transfmatcat: no visible global function definition for ‘qnorm’
transfmatcat: no visible global function definition for ‘sd’
Undefined global functions or variables:
  dist head qnorm quantile runif sd tail
Consider adding
  importFrom("stats", "dist", "qnorm", "quantile", "runif", "sd")
  importFrom("utils", "head", "tail")
to your NAMESPACE file.
ForwardSearch.fit: no visible global function definition for ‘glm.fit’
ForwardSearch.plot: no visible global function definition for ‘lines’
ForwardSearch.pointwise.asymptotics: no visible global function
  definition for ‘qnorm’
ForwardSearch.pointwise.asymptotics: no visible global function
  definition for ‘dnorm’
Undefined global functions or variables:
  dnorm glm.fit lines qnorm
Consider adding
  importFrom("graphics", "lines")
  importFrom("stats", "dnorm", "glm.fit", "qnorm")
to your NAMESPACE file.
'library' or 'require' call to ‘shapefiles’ which was already attached by Depends.
  Please remove these calls from your code.
dino.dist: no visible global function definition for ‘as.dist’
earth.dist: no visible global function definition for ‘as.dist’
ecol.dist: no visible global function definition for ‘as.dist’
loc.map: no visible global function definition for ‘points’
msn.map: no visible global function definition for ‘points’
msn.map: no visible global function definition for ‘lines’
mstlines: no visible global function definition for ‘lines’
nmds.mst: no visible global function definition for ‘lines’
rclust.null: no visible global function definition for ‘sd’
sim.occ: no visible global function definition for ‘rlnorm’
spp.est: no visible global function definition for ‘sd’
Undefined global functions or variables:
  as.dist lines points rlnorm sd
Consider adding
  importFrom("graphics", "lines", "points")
  importFrom("stats", "as.dist", "rlnorm", "sd")
to your NAMESPACE file.
Rd file 'create.matrix.Rd':
  \usage lines wider than 90 characters:
       create.matrix(x,tax.name="genus",locality="locality",time.col=NULL,time=NULL,abund=FALSE,abund.col="abundance")

Rd file 'new.lat.long.Rd':
  \examples lines wider than 100 characters:
     #Travel from 0,0 to a new location at a bearing of 45 degrees from North (clockwise) and 1000 km away

These lines will be truncated in the PDF manual.
GenObs: no visible global function definition for ‘rnorm’
GenObs.T: no visible global function definition for ‘rt’
MeasL: no visible global function definition for ‘rbeta’
OutDet: no visible global function definition for ‘median’
RanCur: no visible global function definition for ‘rnorm’
init: no visible global function definition for ‘prcomp’
Undefined global functions or variables:
  median prcomp rbeta rnorm rt
Consider adding
  importFrom("stats", "median", "prcomp", "rbeta", "rnorm", "rt")
to your NAMESPACE file.
Rd file 'fpca.mle.Rd':
  \usage lines wider than 90 characters:
     fpca.mle(data.m, M.set,r.set, ini.method="EM", basis.method="bs", sl.v=rep(0.5,10), max.step=50,
  \examples lines wider than 100 characters:
      ##model selection result: the true model M=5, r=3 is selected with the smallest CV score among all converged models
      ##look at the CV scores and convergence for each model: note that model (M=5, r=4) does not converge. 
     #get predicted trajectories on a fine grid: the same grid for which mean and eigenfunctions are evaluated
     plot(t.c,y.c,ylim=range(pred[,id]),xlab="time",ylab="obs", main=paste("predicted trajectory of curve", id))
      ##model selection result: the true model M=5, r=3 is selected with the smallest CV score among all converged models
      plot(grids.new,result$eigenfunctions[i,],ylim=range(result$eigenfunctions),xlab="time",ylab=paste("eigenfunction",i))
      ##look at the CV scores and convergence for each model: note that model (M=5, r=4) does not converge. 

These lines will be truncated in the PDF manual.
File ‘fpow/libs/fpow.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
confint.fracdiff: no visible global function definition for ‘coef’
confint.fracdiff: no visible global function definition for ‘qnorm’
fdGPH: no visible global function definition for ‘na.fail’
fdGPH: no visible global function definition for ‘as.ts’
fdGPH: no visible global function definition for ‘lm’
fdGPH: no visible global function definition for ‘coef’
fdGPH: no visible global function definition for ‘resid’
fdSperio: no visible global function definition for ‘na.fail’
fdSperio: no visible global function definition for ‘as.ts’
fdSperio: no visible global function definition for ‘lm’
fdSperio: no visible global function definition for ‘coef’
fdSperio: no visible global function definition for ‘resid’
fracdiff.sim: no visible binding for global variable ‘rnorm’
logLik.fracdiff: no visible global function definition for ‘coef’
print.fracdiff: no visible global function definition for ‘coef’
print.summary.fracdiff: no visible global function definition for
  ‘printCoefmat’
print.summary.fracdiff: no visible global function definition for
  ‘symnum’
summary.fracdiff: no visible global function definition for ‘coef’
summary.fracdiff: no visible global function definition for ‘pnorm’
summary.fracdiff: no visible global function definition for ‘logLik’
summary.fracdiff: no visible global function definition for ‘AIC’
Undefined global functions or variables:
  AIC as.ts coef lm logLik na.fail pnorm printCoefmat qnorm resid rnorm
  symnum
Consider adding
  importFrom("stats", "AIC", "as.ts", "coef", "lm", "logLik", "na.fail",
             "pnorm", "printCoefmat", "qnorm", "resid", "rnorm",
             "symnum")
to your NAMESPACE file.
Packages in Depends field not imported from:
  ‘futile.any’ ‘futile.logger’ ‘quantmod’ ‘timeDate’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Rd file 'fractal.Rd':
  \usage lines wider than 90 characters:
     fractal.uniform(seed, patterns, count = NULL, epochs = NULL, origin = '1970-01-01', date.fun = as.Date, only = NULL)
     fractal.random(seed, patterns, count = NULL, epochs = NULL, origin = '1970-01-01', date.fun = as.Date, only = NULL)

Rd file 'getPortfolioPrices.Rd':
  \usage lines wider than 90 characters:
     getPortfolioPrices(symbols, obs = NULL, end = Sys.Date(), start = NULL, calendar = holidayNYSE, seeds = NULL, patterns = NULL, ..., typ ... [TRUNCATED]

Rd file 'process.Rd':
  \usage lines wider than 90 characters:
     ou.process(theta, mu = 0, sigma = 1, initial=mu, end = Sys.Date(), start = NULL, obs = NULL)

These lines will be truncated in the PDF manual.
File ‘fractional/libs/fractional.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘base’ ‘pbapply’ ‘stringr’
  All declared Imports should be used.
installed size is  7.8Mb
  sub-directories of 1Mb or more:
    libs   5.4Mb
'library' or 'require' calls to packages already attached by Depends:
  ‘CCP’ ‘MASS’ ‘calibrate’ ‘corpcor’
  Please remove these calls from your code.
Packages in Depends field not imported from:
  ‘CCP’ ‘MASS’ ‘calibrate’ ‘corpcor’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
custom.draw.circle: no visible global function definition for ‘lines’
frcc: no visible binding for global variable ‘sd’
frcc: no visible global function definition for ‘cor.shrink’
frcc: no visible global function definition for ‘cor’
frcc: no visible global function definition for ‘p.asym’
generate_multivariate_normal_sample: no visible global function
  definition for ‘mvrnorm’
plot_units: no visible binding for global variable ‘sd’
plot_units: no visible global function definition for ‘plot’
plot_units: no visible global function definition for ‘points’
plot_units: no visible global function definition for ‘textxy’
plot_variables: no visible global function definition for ‘plot’
plot_variables: no visible global function definition for ‘points’
plot_variables: no visible global function definition for ‘textxy’
plot_variables: no visible global function definition for ‘segments’
Undefined global functions or variables:
  cor cor.shrink lines mvrnorm p.asym plot points sd segments textxy
Consider adding
  importFrom("graphics", "lines", "plot", "points", "segments")
  importFrom("stats", "cor", "sd")
to your NAMESPACE file.
cv.work: no visible global function definition for ‘predict’
fakedata: no visible global function definition for ‘runif’
Undefined global functions or variables:
  predict runif
Consider adding
  importFrom("stats", "predict", "runif")
to your NAMESPACE file.
installed size is  6.7Mb
  sub-directories of 1Mb or more:
    libs   6.6Mb
Found the following significant warnings:
  c_hd_mf.cpp:157:12: warning: explicitly assigning value of variable of type 'Eigen::VectorXd' (aka 'Matrix<double, Dynamic, 1>') to itself [-Wself-assign-overloaded]
See ‘/data/gannet/ripley/R/packages/tests-clang/FRegSigCom.Rcheck/00install.out’ for details.
installed size is 78.0Mb
  sub-directories of 1Mb or more:
    data   1.0Mb
    libs  76.3Mb
installed size is  8.7Mb
  sub-directories of 1Mb or more:
    doc    1.4Mb
    libs   6.4Mb
src/Makevars: SHLIB_OPENMP_CFLAGS is included in PKG_CFLAGS without any C files
  src/Makevars: SHLIB_OPENMP_CFLAGS is included in PKG_LIBS but linking is by C++
  src/Makevars.win: SHLIB_OPENMP_CFLAGS is included in PKG_CFLAGS without any C files
  src/Makevars.win: SHLIB_OPENMP_CFLAGS is included in PKG_LIBS but linking is by C++
Use of these macros is discussed in sect 1.2.1.1 of ‘Writing R
Extensions’. The macros for different languages may differ so the
matching macro must be used in PKG_CXXFLAGS (etc) and match that used
in PKG_LIBS (except for Fortran: see the manual).
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    R   5.7Mb
Package in Depends field not imported from: ‘FrF2’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Package suggested but not available for checking: ‘dggrids’
installed size is  8.2Mb
  sub-directories of 1Mb or more:
    data   4.8Mb
    doc    2.1Mb
Packages in Depends field not imported from:
  ‘Rmpfr’ ‘partitions’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Bell : nways: no visible global function definition for ‘setparts’
Bell: no visible global function definition for ‘restrictedparts’
CalIncLapInt : Deriv: no visible global function definition for ‘D’
CalIncLapInt: no visible global function definition for ‘is.whole’
CalIncLapInt: no visible global function definition for ‘mpfr’
CalIncLapInt: no visible global function definition for ‘chooseMpfr’
derivErfc : Deriv: no visible global function definition for ‘D’
derivErfc : Erfc: no visible global function definition for ‘pnorm’
Undefined global functions or variables:
  D chooseMpfr is.whole mpfr pnorm restrictedparts setparts
Consider adding
  importFrom("stats", "D", "pnorm")
to your NAMESPACE file.
File ‘fromo/libs/fromo.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
ROCscore: no visible global function definition for ‘par’
ROCscore: no visible global function definition for ‘axis’
ROCscore: no visible global function definition for ‘mtext’
ROCscore: no visible global function definition for ‘legend’
alphafrontier.2d: no visible global function definition for ‘par’
alphafrontier.2d: no visible global function definition for ‘polygon’
alphafrontier.2d: no visible global function definition for ‘lines’
alphafrontier.2d: no visible global function definition for ‘points’
alphafrontier.3d: no visible global function definition for ‘layout’
alphafrontier.3d: no visible global function definition for ‘barplot’
alphafrontier.3d: no visible global function definition for ‘axis’
alphafrontier.3d: no visible global function definition for ‘lines’
alphafrontier.3d: no visible global function definition for ‘na.omit’
ordermfrontier.2d: no visible global function definition for ‘par’
ordermfrontier.2d: no visible global function definition for ‘polygon’
ordermfrontier.2d: no visible global function definition for ‘lines’
ordermfrontier.2d: no visible global function definition for ‘points’
ordermscore.boot: no visible global function definition for ‘sd’
Undefined global functions or variables:
  axis barplot layout legend lines mtext na.omit par points polygon sd
Consider adding
  importFrom("graphics", "axis", "barplot", "layout", "legend", "lines",
             "mtext", "par", "points", "polygon")
  importFrom("stats", "na.omit", "sd")
to your NAMESPACE file.
File ‘frontiles/libs/frontiles.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    libs   6.6Mb
'library' or 'require' calls to packages already attached by Depends:
  ‘Matrix’ ‘splines’
  Please remove these calls from your code.
prepare_Rd: baseline.Rd:123: Dropping empty section \examples
prepare_Rd: display.tests.Rd:43: Dropping empty section \references
prepare_Rd: display.tests.Rd:57: Dropping empty section \examples
prepare_Rd: extract.pars.Rd:114: Dropping empty section \examples
prepare_Rd: locate.peaks.Rd:72: Dropping empty section \examples
prepare_Rd: make.par.file.Rd:117: Dropping empty section \examples
prepare_Rd: run.all.Rd:76: Dropping empty section \examples
prepare_Rd: run.analysis.Rd:153: Dropping empty section \examples
prepare_Rd: run.baselines.Rd:91: Dropping empty section \examples
prepare_Rd: run.cluster.matrix.Rd:171: Dropping empty section \examples
prepare_Rd: run.lrg.peaks.Rd:95: Dropping empty section \examples
prepare_Rd: run.peaks.Rd:99: Dropping empty section \examples
prepare_Rd: run.strong.peaks.Rd:115: Dropping empty section \examples
Rd file 'ftnonpar-internal.Rd':
  \usage lines wider than 90 characters:
     genmrcheck(y,yhat,thresh=-1,sigma=1,DYADIC=FALSE,beta=0.5,method=1,thr.const=2,schwelle = 1e+09)

Rd file 'genpmreg.Rd':
  \usage lines wider than 90 characters:
     genpmreg(y, beta = 0.5, squeezing.factor = 0.5, verbose = FALSE, localsqueezing = TRUE, DYADIC = TRUE, thr.const = 2, extrema.nr = -1,  ... [TRUNCATED]

Rd file 'l1pmreg.Rd':
  \usage lines wider than 90 characters:
     quantpmreg(y, beta = 0.5, squeezing.factor = 0.5, verbose = FALSE, localsqueezing = TRUE, DYADIC = TRUE, thr.const = 2, extrema.nr = -1 ... [TRUNCATED]
     l1pmreg(y, beta=0.5, squeezing.factor = 0.5, verbose = FALSE, localsqueezing = TRUE, DYADIC = TRUE, thr.const = 2, extrema.nr = -1, ban ... [TRUNCATED]

Rd file 'mintvmon.Rd':
  \usage lines wider than 90 characters:
     mintvmon(y, sigma = -1, DYADIC = TRUE, thresh = -1, method = 2, MONCONST = TRUE, CONVCONST = FALSE)

Rd file 'pmden.Rd':
  \usage lines wider than 90 characters:
     pmden(x, DISCR=FALSE,verbose = FALSE, bandwidth=-1, extrema.nr = -1, accuracy = mad(x)/1000,  extrema.mean = TRUE,maxkuipnr=19,asympbou ... [TRUNCATED]

These lines will be truncated in the PDF manual.
File ‘ftnonpar/libs/ftnonpar.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘FTRLProximal/libs/FTRLProximal.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘fts/libs/fts.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Packages in Depends field not imported from:
  ‘Rcpp’ ‘snowfall’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
fugeR.evo: no visible global function definition for ‘runif’
fugeR.sfRun: no visible global function definition for ‘sfInit’
fugeR.sfRun: no visible global function definition for ‘sfLibrary’
fugeR.sfRun: no visible global function definition for ‘sfExport’
fugeR.sfRun: no visible global function definition for ‘sfLapply’
fugeR.sfRun: no visible global function definition for ‘sfStop’
Undefined global functions or variables:
  runif sfExport sfInit sfLapply sfLibrary sfStop
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
File ‘fugeR/libs/fugeR.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 16.3Mb
  sub-directories of 1Mb or more:
    data  16.2Mb
bic.generation: no visible global function definition for ‘lm’
bic.generation: no visible global function definition for ‘BIC’
bic.generation : <anonymous>: no visible global function definition for
  ‘lm’
bic.generation : <anonymous>: no visible global function definition for
  ‘BIC’
data.generation : <anonymous> : <anonymous>: no visible global function
  definition for ‘sd’
Undefined global functions or variables:
  BIC lm sd
Consider adding
  importFrom("stats", "BIC", "lm", "sd")
to your NAMESPACE file.
File ‘FunctionalNetworks/libs/FunctionalNetworks.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
.FunFEM.main: no visible global function definition for ‘kmeans’
.FunFEM.main: no visible global function definition for ‘rmultinom’
.FunFEM.main: no visible global function definition for ‘cutree’
.FunFEM.main: no visible global function definition for ‘hclust’
.FunFEM.main: no visible global function definition for ‘dist’
.FunFEM.main: no visible global function definition for ‘par’
.FunFEM.main: no visible global function definition for ‘plot’
.mstep: no visible global function definition for ‘cov’
Undefined global functions or variables:
  cov cutree dist hclust kmeans par plot rmultinom
Consider adding
  importFrom("graphics", "par", "plot")
  importFrom("stats", "cov", "cutree", "dist", "hclust", "kmeans",
             "rmultinom")
to your NAMESPACE file.
File ‘fUnitRoots/libs/fUnitRoots.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    libs   4.9Mb
File ‘futureheatwaves/libs/futureheatwaves.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
fuzzyBHexact: warning in round(pvals, d = dp): partial argument match
  of 'd' to 'digits'
fuzzyBHexact: warning in round(pprev, d = dp): partial argument match
  of 'd' to 'digits'
fuzzyBHexact: warning in round(p.minus, d = 4): partial argument match
  of 'd' to 'digits'
fuzzyBHexact: warning in round(p.plus, d = 4): partial argument match
  of 'd' to 'digits'
fuzzyBHexact: warning in round(a.minus, d = 4): partial argument match
  of 'd' to 'digits'
fuzzyBHexact: warning in round(a.plus, d = 4): partial argument match
  of 'd' to 'digits'
fuzzyBHexact: warning in round(new.p.minus, d = 4): partial argument
  match of 'd' to 'digits'
fuzzyBHexact: warning in round(new.p.plus, d = 4): partial argument
  match of 'd' to 'digits'
fuzzyBHexact: warning in round(pvals, d = 4): partial argument match of
  'd' to 'digits'
fuzzyBHexact: warning in round(pprev, d = 4): partial argument match of
  'd' to 'digits'
fuzzyBHexact: warning in round(tau, d = 4): partial argument match of
  'd' to 'digits'
probRejTies: no visible binding for global variable ‘nn’
Undefined global functions or variables:
  nn
'library' or 'require' call to ‘foreach’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
fxreturns: no visible binding for global variable ‘FXRatesCHF’
fxreturns : <anonymous>: no visible global function definition for
  ‘tail’
gbreakpoints: no visible global function definition for ‘%dopar%’
gbreakpoints: no visible global function definition for ‘foreach’
Undefined global functions or variables:
  %dopar% FXRatesCHF foreach tail
Consider adding
  importFrom("utils", "tail")
to your NAMESPACE file.
Packages in Depends field not imported from:
  ‘MASS’ ‘igraph’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
DBNScoreStep1: no visible global function definition for ‘lm’
DBNScoreStep1: no visible global function definition for ‘rlm’
DBNScoreStep1: no visible global function definition for ‘pt’
DBNScoreStep2: no visible global function definition for ‘lm’
DBNScoreStep2: no visible global function definition for ‘rlm’
DBNScoreStep2: no visible global function definition for ‘pt’
SimulGeneExpressionAR1: no visible global function definition for
  ‘rnorm’
SimulGeneExpressionAR1: no visible global function definition for ‘ts’
SimulNetworkAdjMatrix: no visible global function definition for
  ‘runif’
Undefined global functions or variables:
  lm pt rlm rnorm runif ts
Consider adding
  importFrom("stats", "lm", "pt", "rnorm", "runif", "ts")
to your NAMESPACE file.
File ‘gafit/libs/gafit.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘ggplot2’ ‘maptools’ ‘rgeos’ ‘stringr’ ‘tidyr’
  All declared Imports should be used.
cvriskMSM: no visible global function definition for ‘predict’
plotcvriskMSM: no visible global function definition for ‘plot’
plotcvriskMSM: no visible binding for global variable ‘lines’
plotcvriskMSM: no visible global function definition for ‘lines’
Undefined global functions or variables:
  lines plot predict
Consider adding
  importFrom("graphics", "lines", "plot")
  importFrom("stats", "predict")
to your NAMESPACE file.
'library' or 'require' calls in package code:
  ‘parallel’ ‘snowfall’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: ‘Matrix’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
GAMBoost: no visible global function definition for ‘binomial’
GAMBoost: no visible global function definition for ‘gaussian’
GAMBoost: no visible global function definition for ‘poisson’
GAMBoost: no visible binding for global variable ‘sd’
GAMBoost: no visible global function definition for ‘Matrix’
calc.confidence.bands: no visible global function definition for
  ‘predict’
cv.GAMBoost: no visible global function definition for ‘binomial’
cv.GAMBoost : eval.fold: no visible global function definition for
  ‘predict’
cv.GAMBoost: no visible global function definition for ‘mclapply’
cv.GAMBoost: no visible binding for global variable ‘var’
estimPVal: no visible global function definition for ‘mclapply’
plot.GAMBoost: no visible global function definition for ‘plot’
plot.GAMBoost: no visible global function definition for ‘lines’
Undefined global functions or variables:
  Matrix binomial gaussian lines mclapply plot poisson predict sd var
Consider adding
  importFrom("graphics", "lines", "plot")
  importFrom("stats", "binomial", "gaussian", "poisson", "predict", "sd",
             "var")
to your NAMESPACE file.
File ‘GAMBoost/libs/GAMBoost.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘MASS’ ‘gamlss’
  All declared Imports should be used.
Package in Depends field not imported from: ‘gamlss’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
':::' call which should be '::': ‘gamlss:::.gamlss.bi.list’
  See the note in ?`:::` about the use of this operator.
finterp.data.frame: no visible global function definition for
  ‘as.formula’
finterp.data.frame: no visible global function definition for ‘terms’
finterp.data.frame: no visible global function definition for
  ‘model.matrix’
finterp.data.frame: no visible global function definition for
  ‘model.frame’
finterp.default: no visible global function definition for ‘terms’
finterp.default: no visible global function definition for
  ‘model.matrix’
finterp.default: no visible global function definition for
  ‘model.frame’
gamlss.nl: no visible global function definition for ‘nlm’
nl: no visible global function definition for ‘is’
nlgamlss: no visible global function definition for ‘NO’
nlgamlss: no visible global function definition for ‘as.gamlss.family’
nlgamlss: no visible global function definition for ‘nlm’
nlgamlss: no visible global function definition for ‘cov2cor’
summary.nlgamlss: no visible global function definition for ‘coef’
summary.nlgamlss: no visible global function definition for ‘pnorm’
Undefined global functions or variables:
  NO as.formula as.gamlss.family coef cov2cor is model.frame
  model.matrix nlm pnorm terms
Consider adding
  importFrom("methods", "is")
  importFrom("stats", "as.formula", "coef", "cov2cor", "model.frame",
             "model.matrix", "nlm", "pnorm", "terms")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
File ‘gaselect/libs/gaselect.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 10.6Mb
  sub-directories of 1Mb or more:
    data   1.4Mb
    libs   8.3Mb
installed size is 118.4Mb
  sub-directories of 1Mb or more:
    libs  118.0Mb
Namespaces in Imports field not imported from:
  ‘methods’ ‘rstantools’
  All declared Imports should be used.
installed size is 86.9Mb
  sub-directories of 1Mb or more:
    extdata   1.6Mb
    libs     83.8Mb
installed size is  5.5Mb
  sub-directories of 1Mb or more:
    libs   4.6Mb
contindic.gb2: no visible global function definition for ‘contour’
contindic.gb2: no visible global function definition for ‘box’
contindic.gb2: no visible global function definition for ‘mtext’
contprof.gb2: no visible global function definition for ‘image’
contprof.gb2: no visible global function definition for ‘heat.colors’
contprof.gb2: no visible global function definition for ‘contour’
contprof.gb2: no visible global function definition for ‘text’
contprof.gb2: no visible global function definition for ‘box’
dplot.cavgb2: no visible global function definition for ‘par’
dplot.cavgb2: no visible global function definition for ‘curve’
dplot.cavgb2: no visible global function definition for ‘legend’
dplot.cavgb2: no visible global function definition for ‘plot’
dplot.cavgb2: no visible global function definition for ‘lines’
dplot.cgb2: no visible global function definition for ‘curve’
dplot.cgb2: no visible global function definition for ‘lines’
dplot.cgb2: no visible global function definition for ‘legend’
plotsML.gb2: no visible global function definition for ‘par’
plotsML.gb2: no visible global function definition for ‘plot’
plotsML.gb2: no visible global function definition for ‘abline’
plotsML.gb2: no visible global function definition for ‘curve’
plotsML.gb2: no visible global function definition for ‘legend’
saveplot : <local>: no visible global function definition for ‘dev.set’
saveplot : <local>: no visible global function definition for
  ‘dev.print’
saveplot : <local>: no visible binding for global variable ‘pdf’
Undefined global functions or variables:
  abline box contour curve dev.print dev.set heat.colors image legend
  lines mtext par pdf plot text
Consider adding
  importFrom("grDevices", "dev.print", "dev.set", "heat.colors", "pdf")
  importFrom("graphics", "abline", "box", "contour", "curve", "image",
             "legend", "lines", "mtext", "par", "plot", "text")
to your NAMESPACE file.
installed size is 18.3Mb
  sub-directories of 1Mb or more:
    doc    1.2Mb
    libs  16.9Mb
File ‘gbp/libs/gbp.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
gcat.test: no visible global function definition for ‘pnorm’
generate_sub: no visible global function definition for ‘runif’
pfcn: no visible global function definition for ‘pnorm’
Undefined global functions or variables:
  pnorm runif
Consider adding
  importFrom("stats", "pnorm", "runif")
to your NAMESPACE file.
File ‘gCat/libs/gCat.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following apparent S3 methods exported but not registered:
  reorder.hclust
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Rd file 'cpairs.Rd':
  \usage lines wider than 90 characters:
     cpairs(data, order = NULL, panel.colors = NULL, border.color = "grey70", show.points = TRUE, ...)

Rd file 'cparcoord.Rd':
  \usage lines wider than 90 characters:
     cparcoord(data, order = NULL, panel.colors = NULL, col = 1, lty = 1, horizontal = FALSE, mar = NULL, ...)

These lines will be truncated in the PDF manual.
File ‘gconcord/libs/gconcord.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘GCPM/libs/GCPM.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Package in Depends field not imported from: ‘tools’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
DownloadGdelt: no visible global function definition for
  ‘packageVersion’
DownloadGdelt: no visible global function definition for
  ‘download.file’
GdeltZipToDataframe: no visible global function definition for
  ‘read.delim’
GdeltZipToDataframe: no visible global function definition for ‘unzip’
GetSizeOfGDELT: no visible global function definition for ‘read.delim’
IsValidGDELT: no visible global function definition for ‘read.delim’
IsValidGDELT: no visible global function definition for ‘md5sum’
NormEventCounts: no visible global function definition for
  ‘download.file’
NormEventCounts: no visible global function definition for ‘read.csv’
Undefined global functions or variables:
  download.file md5sum packageVersion read.csv read.delim unzip
Consider adding
  importFrom("utils", "download.file", "packageVersion", "read.csv",
             "read.delim", "unzip")
to your NAMESPACE file.
installed size is 11.1Mb
  sub-directories of 1Mb or more:
    libs  10.2Mb
Found the following significant warnings:
  cGetHCS.c:9:33: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
  cIdentical.c:9:34: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
See ‘/data/gannet/ripley/R/packages/tests-clang/gdmp.Rcheck/00install.out’ for details.
File ‘gdmp/libs/gdmp.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘GEEaSPU/libs/GEEaSPU.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘geepack/libs/geepack.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘rootSolve’
  All declared Imports should be used.
File ‘geiger/libs/geiger.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘gelnet/libs/gelnet.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘gemtc/libs/gemtc.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘NMF’ ‘RColorBrewer’ ‘VennDiagram’ ‘clValid’ ‘data.table’ ‘grid’
  ‘gtools’ ‘pca3d’ ‘rmarkdown’ ‘scales’ ‘shinydashboard’ ‘shinyjs’
  ‘statmod’ ‘stringr’
  All declared Imports should be used.
gPopCreate: no visible global function definition for ‘rnorm’
periodogram.freq: no visible global function definition for ‘spectrum’
periodogram.freq: no visible global function definition for ‘frequency’
periodogram.spec.single: no visible global function definition for
  ‘spectrum’
periodogram.spec.single: no visible global function definition for
  ‘fft’
robust.g.test: no visible global function definition for ‘read.table’
robust.g.test: no visible global function definition for ‘density’
robust.spectrum: no visible global function definition for ‘density’
robust.spectrum.single: no visible global function definition for ‘fft’
spearman: no visible global function definition for ‘cor’
Undefined global functions or variables:
  cor density fft frequency read.table rnorm spectrum
Consider adding
  importFrom("stats", "cor", "density", "fft", "frequency", "rnorm",
             "spectrum")
  importFrom("utils", "read.table")
to your NAMESPACE file.
fit.dbn: no visible global function definition for ‘as’
Undefined global functions or variables:
  as
Consider adding
  importFrom("methods", "as")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
File ‘genepi/libs/genepi.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 11.0Mb
  sub-directories of 1Mb or more:
    libs   9.0Mb
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    doc    4.7Mb
    libs   1.5Mb
'library' or 'require' calls to packages already attached by Depends:
  ‘igraph’ ‘splines’
  Please remove these calls from your code.
Found the following apparent S3 methods exported but not registered:
  plot.GeneReg
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Found an obsolete/platform-specific call in the following function:
  ‘timedelay.lm’
Found the platform-specific device:
  ‘x11’
dev.new() is the preferred way to open a new device, in the unlikely
event one is needed.
timedelay.lm: no visible global function definition for ‘lm’
timedelay.lm: no visible global function definition for ‘AIC’
timedelay.lm: no visible global function definition for ‘pdf’
timedelay.lm: no visible global function definition for ‘x11’
timedelay.lm: no visible global function definition for ‘rainbow’
timedelay.lm: no visible global function definition for ‘title’
timedelay.lm: no visible global function definition for ‘lines’
timedelay.lm: no visible global function definition for ‘predict’
timedelay.lm: no visible global function definition for ‘points’
timedelay.lm: no visible global function definition for ‘legend’
timedelay.lm: no visible global function definition for ‘dev.off’
timedelay.univariate.lm: no visible global function definition for ‘lm’
timedelay.univariate.lm: no visible global function definition for
  ‘AIC’
ts.bspline: no visible global function definition for ‘lm’
ts.bspline: no visible global function definition for ‘predict’
Undefined global functions or variables:
  AIC dev.off legend lines lm pdf points predict rainbow title x11
Consider adding
  importFrom("grDevices", "dev.off", "pdf", "rainbow", "x11")
  importFrom("graphics", "legend", "lines", "points", "title")
  importFrom("stats", "AIC", "lm", "predict")
to your NAMESPACE file.
prepare_Rd: GeneReg-package.Rd:12-13: Dropping empty section \usage
prepare_Rd: GeneReg-package.Rd:14-15: Dropping empty section \arguments
Found the following apparent S3 methods exported but not registered:
  diseq.ci summary.LD.data.frame
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Package unavailable to check Rd xrefs: ‘GeneticsDesign’
S3 methods shown with full name in documentation object 'diseq':
  ‘diseq.ci’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
ForImp.Mahala: no visible global function definition for ‘combn’
ForImp.Mahala: no visible global function definition for ‘var’
ForImp.Mahala: no visible global function definition for ‘quantile’
ForImp.Mahala : <anonymous>: no visible global function definition for
  ‘var’
ForImp.Mahala : <anonymous> : <anonymous>: no visible global function
  definition for ‘var’
ForImp.Mahala : <anonymous> : <anonymous>: no visible global function
  definition for ‘quantile’
ForImp.PCA: no visible global function definition for ‘cov’
ForImp.PCA: no visible global function definition for ‘princomp’
ForImp.PCA: no visible global function definition for ‘combn’
ForImp.PCA: no visible global function definition for ‘quantile’
ForImp.PCA : <anonymous> : <anonymous>: no visible global function
  definition for ‘quantile’
Undefined global functions or variables:
  combn cov princomp quantile var
Consider adding
  importFrom("stats", "cov", "princomp", "quantile", "var")
  importFrom("utils", "combn")
to your NAMESPACE file.
Package in Depends field not imported from: ‘KernSmooth’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
KernSec: no visible global function definition for ‘na.omit’
KernSur: no visible global function definition for ‘na.fail’
KernSur: no visible global function definition for ‘na.omit’
bandwidthselect: no visible global function definition for ‘na.omit’
bandwidthselect: no visible global function definition for ‘dpik’
correlationselect: no visible global function definition for ‘cor’
nearest: no visible global function definition for ‘na.fail’
nearest: no visible global function definition for ‘na.omit’
per: no visible global function definition for ‘na.fail’
Undefined global functions or variables:
  cor dpik na.fail na.omit
Consider adding
  importFrom("stats", "cor", "na.fail", "na.omit")
to your NAMESPACE file.
File ‘GenKern/libs/GenKern.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    exdata   5.1Mb
File ‘genMOSSplus/libs/genMOSSplus.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
MOSS_GWAS: no visible global function definition for ‘complete.cases’
MOSS_GWAS_main: no visible global function definition for ‘rbinom’
MOSS_GWAS_main: no visible global function definition for ‘na.omit’
MOSS_GWAS_main: no visible global function definition for ‘glm’
MOSS_GWAS_main: no visible global function definition for ‘poisson’
MOSS_Hierarchical: no visible global function definition for
  ‘as.formula’
MOSS_Hierarchical: no visible global function definition for ‘rbinom’
cvFunc: no visible global function definition for ‘na.omit’
findDualGenerators: no visible global function definition for ‘na.omit’
findGenerators: no visible global function definition for ‘na.omit’
findLogMargLik: no visible global function definition for ‘na.omit’
findModel: no visible global function definition for ‘as.formula’
findNeighbours: no visible global function definition for ‘na.omit’
fitInteractionModels: no visible global function definition for
  ‘na.omit’
fitInteractionModels: no visible global function definition for ‘glm’
fitInteractionModels: no visible global function definition for
  ‘poisson’
getSubsets: no visible global function definition for ‘na.omit’
logLaplace: no visible global function definition for ‘as.formula’
logLaplace: no visible global function definition for ‘model.matrix’
logLaplace: no visible global function definition for ‘glm’
logLaplace: no visible global function definition for ‘poisson’
mWindow: no visible global function definition for ‘complete.cases’
prettyFormula: no visible global function definition for ‘na.omit’
randomHierModel: no visible global function definition for ‘rbinom’
recode_data: no visible global function definition for ‘complete.cases’
Undefined global functions or variables:
  as.formula complete.cases glm model.matrix na.omit poisson rbinom
Consider adding
  importFrom("stats", "as.formula", "complete.cases", "glm",
             "model.matrix", "na.omit", "poisson", "rbinom")
to your NAMESPACE file.
File ‘genMOSS/libs/genMOSS.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘genSurv/libs/genSurv.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
splineAnalyze: no visible global function definition for ‘var’
splineAnalyze: no visible global function definition for ‘par’
splineAnalyze: no visible global function definition for ‘plot’
splineAnalyze: no visible global function definition for ‘lines’
Undefined global functions or variables:
  lines par plot var
Consider adding
  importFrom("graphics", "lines", "par", "plot")
  importFrom("stats", "var")
to your NAMESPACE file.
installed size is  8.5Mb
  sub-directories of 1Mb or more:
    data   2.8Mb
    libs   5.0Mb
File ‘geoCount/libs/geoCount.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
PAEA : <anonymous>: no visible global function definition for
  ‘integrate’
PAEAAnalysis: no visible global function definition for
  ‘txtProgressBar’
PAEAAnalysis : <anonymous>: no visible global function definition for
  ‘setTxtProgressBar’
PAEAAnalysis: no visible global function definition for ‘par’
PAEAAnalysis: no visible global function definition for ‘barplot’
chdirSig: no visible global function definition for ‘prcomp’
chdirSig: no visible global function definition for ‘rchisq’
chdirSig: no visible global function definition for ‘txtProgressBar’
chdirSig : <anonymous> : <anonymous>: no visible global function
  definition for ‘setTxtProgressBar’
chdirplots : <anonymous>: no visible global function definition for
  ‘par’
chdirplots : <anonymous>: no visible global function definition for
  ‘plot’
chdirplots : <anonymous>: no visible global function definition for
  ‘arrows’
chdirplots : <anonymous>: no visible global function definition for
  ‘barplot’
multigmtPAEAAnalysis: no visible global function definition for
  ‘txtProgressBar’
multigmtPAEAAnalysis : <anonymous>: no visible global function
  definition for ‘setTxtProgressBar’
multigmtPAEAAnalysis : <anonymous>: no visible global function
  definition for ‘data’
multigmtPAEAAnalysis : <anonymous>: no visible global function
  definition for ‘write.table’
Undefined global functions or variables:
  arrows barplot data integrate par plot prcomp rchisq
  setTxtProgressBar txtProgressBar write.table
Consider adding
  importFrom("graphics", "arrows", "barplot", "par", "plot")
  importFrom("stats", "integrate", "prcomp", "rchisq")
  importFrom("utils", "data", "setTxtProgressBar", "txtProgressBar",
             "write.table")
to your NAMESPACE file.
Namespaces in Imports field not imported from:
  ‘maptools’ ‘rgdal’ ‘rgeos’
  All declared Imports should be used.
SimTangleData: no visible global function definition for ‘runif’
SimTangleData: no visible global function definition for ‘dist’
SimTangleData: no visible global function definition for ‘rnorm’
SimTangleData: no visible global function definition for ‘qgamma’
SimTangleData: no visible global function definition for ‘pnorm’
SimTangleData: no visible global function definition for ‘rmultinom’
TangleInference: no visible global function definition for ‘rnorm’
TangleInferenceGauss : thetaOpt: no visible global function definition
  for ‘dist’
TangleInferenceGauss : thetaOpt: no visible global function definition
  for ‘optim’
TangleInferenceGauss : predError: no visible global function definition
  for ‘dist’
Undefined global functions or variables:
  dist optim pnorm qgamma rmultinom rnorm runif
Consider adding
  importFrom("stats", "dist", "optim", "pnorm", "qgamma", "rmultinom",
             "rnorm", "runif")
to your NAMESPACE file.
File ‘GeoGenetix/libs/GeoGenetix.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    doc    1.3Mb
    libs   3.7Mb
installed size is  6.8Mb
  sub-directories of 1Mb or more:
    help   1.3Mb
    libs   4.8Mb
installed size is 26.1Mb
  sub-directories of 1Mb or more:
    data  26.0Mb
installed size is  7.0Mb
  sub-directories of 1Mb or more:
    R         5.0Mb
    extdata   1.4Mb
Running examples in ‘geometa-Ex.R’ failed
The error most likely occurred in:

> ### Name: registerISOCodelist
> ### Title: registerISOCodelist
> ### Aliases: registerISOCodelist
> 
> ### ** Examples
> 
>             
>   registerISOCodelist(
+    refFile = "http://www.isotc211.org/2005/resources/Codelist/ML_gmxCodelists.xml",
+    id = "LanguageCode",
+    force = TRUE
+  )
Unknown IO errorfailed to load external entity "http://www.isotc211.org/2005/resources/Codelist/ML_gmxCodelists.xml"
Error: 1: Unknown IO error2: failed to load external entity "http://www.isotc211.org/2005/resources/Codelist/ML_gmxCodelists.xml"
Execution halted
File ‘geometry/libs/geometry.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 14.7Mb
  sub-directories of 1Mb or more:
    doc    1.0Mb
    libs  13.0Mb
Namespace in Imports field not imported from: ‘velociraptr’
  All declared Imports should be used.
Found the following assignments to the global environment:
File ‘geoR/R/auxiliar.R’:
  assign(".objfuncQQ", objfunc, pos = 1)
  assign(".bounds.list", .bounds.list, pos = 1)
  assign("madtonormalQQ", madtonormalQQ, pos = 1)
File ‘geoR/R/likGRF.R’:
  assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords), 
    realisations), vecdist), pos = 1)
  assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords), 
    realisations), vecdist), pos = 1)
  assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords.c), 
    temp.list$realisations), vecdist), pos = 1)
  assign(".temp.lower.lambda", -2, pos = 1)
  assign(".temp.upper.lambda", 2, pos = 1)
File ‘geoR/R/profiles.R’:
  assign(".temp.list", list(n = n, z = data, beta.size = dim(trend)[2], 
    kappa = obj.likfit$kappa, xmat = trend, method.lik = obj.likfit$method.lik, 
    dists.lowertri = dists.vec, cov.model = obj.likfit$cov.model, 
    fix.lambda = obj.likfit$transform.info$fix.lambda, lambda = obj.likfit$lambda, 
    lower.phi = lower.phi, upper.phi = upper.phi, lower.sigmasq = lower.sigmasq, 
    phi.est = phi, tausq.rel.est = tausq.rel, tausq.est = tausq, 
    sigmasq.est = sigmasq), pos = 1)
  assign(".temp.temp.list", get(".temp.list", pos = 1), pos = 1)
  assign(".temp.list", .temp.temp.list, pos = 1)
  assign(".temp.lambda", lambda, pos = 1)
  assign(".temp.lambda", lambda, pos = 1)
File ‘geoR/R/simul.R’:
  assign("setRF", geoR2RF(cov.model = cov.model, cov.pars = cov.pars, 
    nugget = nugget, kappa = kappa, aniso.pars = aniso.pars), 
    pos = 1)
File ‘geoR/R/variofit.R’:
  assign(".temp.theta", NULL, pos = 1)
  assign(".temp.theta", theta, pos = 1)
  assign(".IND.geoR.variog.model.env", TRUE, pos = 1)
File ‘geoR/R/variogram.R’:
  assign(".variog4.nomessage", TRUE, pos = 1)
File ‘geoR/libs/geoR.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
ImagePoly: no visible global function definition for ‘plot’
performSinglePlot: no visible global function definition for
  ‘heat.colors’
Undefined global functions or variables:
  heat.colors plot
Consider adding
  importFrom("grDevices", "heat.colors")
  importFrom("graphics", "plot")
to your NAMESPACE file.
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    data   3.8Mb
Namespaces in Imports field not imported from:
  ‘ggplot2’ ‘utils’
  All declared Imports should be used.
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    libs   4.2Mb
Namespaces in Imports field not imported from:
  ‘DT’ ‘shinydashboard’
  All declared Imports should be used.
Error in re-building vignettes:
  ...
! LaTeX Error: Option clash for package xcolor.

Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
Failed to compile Introduction.tex. See Introduction.log for more info.
Execution halted
GESTr: no visible global function definition for ‘rnorm’
GESTr: no visible global function definition for ‘sd’
GESTr : <anonymous>: no visible global function definition for ‘pnorm’
TranSAM : magChange: no visible global function definition for ‘median’
TranSAM : dstat: no visible global function definition for ‘sd’
TranSAM: no visible binding for global variable ‘sd’
TranSAM: no visible global function definition for ‘quantile’
findReplicateGroups: no visible global function definition for ‘qnorm’
findReplicateGroups: no visible global function definition for ‘sd’
fitGMM : simulateData: no visible global function definition for
  ‘rnorm’
fitGMM : simulateData: no visible global function definition for ‘sd’
fitGMM: no visible global function definition for ‘median’
fitGMM: no visible global function definition for ‘ks.test’
fitRockeDurbin: no visible global function definition for ‘dist’
fitRockeDurbin : findLowGenes: no visible global function definition
  for ‘median’
fitRockeDurbin : findLowGenes: no visible global function definition
  for ‘mad’
fitRockeDurbin: no visible binding for global variable ‘sd’
getMonotonicConfidences_multiclass: no visible global function
  definition for ‘pnorm’
getMonotonicConfidences_multiclass: no visible global function
  definition for ‘sd’
Undefined global functions or variables:
  dist ks.test mad median pnorm qnorm quantile rnorm sd
Consider adding
  importFrom("stats", "dist", "ks.test", "mad", "median", "pnorm",
             "qnorm", "quantile", "rnorm", "sd")
to your NAMESPACE file.
Rd file 'TranSAM.Rd':
  \usage lines wider than 90 characters:
     TranSAM(x,samples1,samples2,minChange=0.2,var_filter=0.01,maxFDR=1,changeStep=0.1,scoreFun="magChange")
  \examples lines wider than 100 characters:
     selected.columns <- sort(c(sample(1:ncol(ABIdata),30),which(colnames(ABIdata) %in% c("GSM194513","GSM194514","GSM194515","GSM194516","G ... [TRUNCATED]

These lines will be truncated in the PDF manual.
Error in re-building vignettes:
  ...
Quitting from lines 99-112 (gitrd-vignette-introduction.Rmd) 
Error: processing vignette 'gitrd-vignette-introduction.Rmd' failed with diagnostics:
cannot open URL 'http://www.rad.cvm.gov.br/enetconsulta/frmDownloadDocumento.aspx?CodigoInstituicao=2&NumeroSequencialDocumento=8019'
Execution halted
Namespaces in Imports field not imported from:
  ‘bitops’ ‘data.table’ ‘dplyr’ ‘httr’
  All declared Imports should be used.
'library' or 'require' call to ‘party’ which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: ‘party’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
gTree: no visible global function definition for ‘ctree’
gTree: no visible global function definition for ‘ctree_control’
guttmanErrors: no visible global function definition for ‘runif’
Undefined global functions or variables:
  ctree ctree_control runif
Consider adding
  importFrom("stats", "runif")
to your NAMESPACE file.
File ‘gettz/libs/gettz.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing or unexported object: ‘stable::dstable.quick’
'library' or 'require' call to ‘multtest’ which was already attached by Depends.
  Please remove these calls from your code.
Rd file 'gexmap.Rd':
  \usage lines wider than 90 characters:
     gexmap(genome = "homosapiens", scale = "", source = "", res = "", isGO = FALSE, isMAP = TRUE, lim_chi = 5, global_test_choice = 4, pcor ... [TRUNCATED]

These lines will be truncated in the PDF manual.
Found the following significant warnings:
  FORCE_certify.c:116:15: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
See ‘/data/gannet/ripley/R/packages/tests-clang/GFORCE.Rcheck/00install.out’ for details.
src/Makevars: it is not portable to include SHLIB_OPENMP_*' macros in PKG_CPPFLAGS
Use of these macros is discussed in sect 1.2.1.1 of ‘Writing R
Extensions’. The macros for different languages may differ so the
matching macro must be used in PKG_CXXFLAGS (etc) and match that used
in PKG_LIBS (except for Fortran: see the manual).
PKG_CPPFLAGS is used for both C and C++ code so it is not portable to
use it for these macros.
Namespace in Imports field not imported from: ‘plotly’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘ggforce’ ‘plyr’
  All declared Imports should be used.
installed size is 16.0Mb
  sub-directories of 1Mb or more:
    libs  15.5Mb
Namespaces in Imports field not imported from:
  ‘GGEBiplotGUI’ ‘gge’ ‘utils’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘colorspace’ ‘grid’ ‘rstan’
  All declared Imports should be used.
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    doc   2.7Mb
Namespaces in Imports field not imported from:
  ‘gridExtra’ ‘lazyeval’ ‘readr’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘grid’ ‘tibble’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘ggforce’ ‘webshot’ ‘ztable’
  All declared Imports should be used.
Found the following significant warnings:
  Warning: ‘__var_41_mma.offset’ is used uninitialized in this function [-Wuninitialized]
See ‘/data/gannet/ripley/R/packages/tests-clang/gglasso.Rcheck/00install.out’ for details.
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘grid’ ‘scales’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘mgcv’ ‘reshape2’ ‘viridisLite’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘gcookbook’ ‘ggthemes’ ‘moonBook’ ‘tidyverse’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘grDevices’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DT’ ‘Formula’ ‘Hmisc’ ‘colourpicker’ ‘dplyr’ ‘ggpmisc’ ‘ggrepel’
  ‘grDevices’ ‘gridExtra’ ‘lazyeval’ ‘markdown’ ‘plotly’ ‘quantreg’
  ‘rlang’ ‘shinyjs’ ‘table1’ ‘tidyr’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘randomForest’
  All declared Imports should be used.
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    doc    3.0Mb
    libs   2.2Mb
installed size is  9.3Mb
  sub-directories of 1Mb or more:
    extdata   9.0Mb
Package in Depends field not imported from: ‘ggplot2’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
ggroc: no visible global function definition for ‘ggplot’
ggroc: no visible global function definition for ‘aes’
ggroc: no visible global function definition for ‘geom_point’
ggroc: no visible global function definition for ‘geom_line’
ggroc: no visible global function definition for ‘theme’
ggroc: no visible global function definition for ‘element_text’
ggroc: no visible global function definition for ‘labs’
ggroc: no visible global function definition for ‘ggsave’
Undefined global functions or variables:
  aes element_text geom_line geom_point ggplot ggsave labs theme
Namespaces in Imports field not imported from:
  ‘reshape2’ ‘rosm’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘glmmTMB’
  All declared Imports should be used.
File ‘ghyp/libs/ghyp.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
acovamcmc: no visible global function definition for ‘rnorm’
acovamcmc: no visible global function definition for ‘rgamma’
acovamcmc: no visible binding for global variable ‘quantile’
acovamcmc: no visible global function definition for ‘quantile’
acovamcmc: no visible global function definition for ‘var’
plot.acovamcmc: no visible global function definition for ‘dev.new’
plot.acovamcmc: no visible global function definition for ‘par’
plot.acovamcmc: no visible global function definition for ‘plot’
plot.acovamcmc: no visible global function definition for ‘density’
plot.acovamcmc: no visible global function definition for ‘acf’
plot.acovamcmc: no visible global function definition for ‘contour’
plot.acovamcmc: no visible global function definition for ‘image’
plot.acovamcmc: no visible global function definition for ‘persp’
Undefined global functions or variables:
  acf contour density dev.new image par persp plot quantile rgamma
  rnorm var
Consider adding
  importFrom("grDevices", "dev.new")
  importFrom("graphics", "contour", "image", "par", "persp", "plot")
  importFrom("stats", "acf", "density", "quantile", "rgamma", "rnorm",
             "var")
to your NAMESPACE file.
installed size is  7.0Mb
  sub-directories of 1Mb or more:
    libs   6.6Mb
File ‘GiRaF/libs/GiRaF.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
choro.legend: no visible global function definition for ‘strwidth’
choro.legend: no visible global function definition for ‘legend’
choro.legend: no visible global function definition for ‘text’
jitter.points: no visible global function definition for ‘rnorm’
level.plot: no visible global function definition for ‘.filled.contour’
map.scale: no visible global function definition for ‘par’
map.scale: no visible global function definition for ‘rect’
map.scale: no visible global function definition for ‘lines’
map.scale: no visible global function definition for ‘text’
map.scale: no visible global function definition for ‘strheight’
north.arrow: no visible global function definition for ‘polygon’
north.arrow: no visible global function definition for ‘text’
north.arrow: no visible global function definition for ‘strheight’
poly.labels: no visible global function definition for ‘slot’
poly.labels : <anonymous>: no visible global function definition for
  ‘slot’
quantileCuts: no visible global function definition for ‘quantile’
sdCuts: no visible global function definition for ‘sd’
Undefined global functions or variables:
  .filled.contour legend lines par polygon quantile rect rnorm sd slot
  strheight strwidth text
Consider adding
  importFrom("graphics", ".filled.contour", "legend", "lines", "par",
             "polygon", "rect", "strheight", "strwidth", "text")
  importFrom("methods", "slot")
  importFrom("stats", "quantile", "rnorm", "sd")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Namespace in Imports field not imported from: ‘mockery’
  All declared Imports should be used.
Package in Depends field not imported from: ‘lattice’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
':::' call which should be '::': ‘lattice:::latticeParseFormula’
  See the note in ?`:::` about the use of this operator.
Unexported objects imported by ':::' calls:
  ‘lattice:::compute.packet’ ‘lattice:::cond.orders’
  ‘lattice:::construct.scales’ ‘lattice:::cupdate’
  ‘lattice:::limits.and.aspect’ ‘lattice:::logLimits’
  ‘lattice:::needAutoKey’ ‘lattice:::prepanel.null’
  ‘lattice:::scale.limits’ ‘lattice:::trellis.skeleton’
  ‘lattice:::updateList’
  See the note in ?`:::` about the use of this operator.
Found the following apparent S3 methods exported but not registered:
  pyramid2.formula
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
panel.pyramid: no visible global function definition for
  ‘trellis.par.get’
panel.pyramid: no visible global function definition for
  ‘current.panel.limits’
panel.pyramid: no visible global function definition for ‘panel.abline’
panel.pyramid: no visible global function definition for ‘panel.rect’
pyramid2.formula: no visible global function definition for
  ‘lattice.getOption’
pyramid2.formula: no visible global function definition for
  ‘is.shingle’
pyramid2.formula: no visible global function definition for
  ‘as.factorOrShingle’
pyramidlattice: no visible global function definition for ‘update’
useOuterStrips2: no visible global function definition for ‘modifyList’
useOuterStrips2 : new.strip: no visible global function definition for
  ‘strip.default’
useOuterStrips2 : new.strip.left: no visible global function definition
  for ‘strip.default’
useOuterStrips2: no visible global function definition for ‘update’
Undefined global functions or variables:
  as.factorOrShingle current.panel.limits is.shingle lattice.getOption
  modifyList panel.abline panel.rect strip.default trellis.par.get
  update
Consider adding
  importFrom("stats", "update")
  importFrom("utils", "modifyList")
to your NAMESPACE file.
installed size is  9.3Mb
  sub-directories of 1Mb or more:
    libs   9.1Mb
File ‘glcm/libs/glcm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘GLDEX/libs/GLDEX.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘gld/libs/gld.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘gllm/libs/gllm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 29.0Mb
  sub-directories of 1Mb or more:
    libs  28.6Mb
File ‘GLMaSPU/libs/GLMaSPU.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘glmgraph/libs/glmgraph.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Calls with DUP:
   .C("gaulep", as.double(x), as.double(y), as.double(ls[i]), as.double(kappa), 
       as.double(tol), as.integer(max.ite), as.integer(n), as.integer(p), 
       as.double(beta0), DUP = FALSE)
   .C("binlep", as.double(x), as.double(y), as.double(ls[i]), as.double(kappa), 
       as.double(tol), as.integer(max.ite), as.integer(n), as.integer(p), 
       as.double(beta0), DUP = FALSE)
   .C("gaulep", as.double(train.x), as.double(train.y), as.double(ls[i]), 
       as.double(kappa), as.double(tol), as.integer(max.ite), as.integer(nj), 
       as.integer(p), as.double(beta0), DUP = FALSE)
   .C("binlep", as.double(train.x), as.double(train.y), as.double(ls[i]), 
       as.double(kappa), as.double(tol), as.integer(max.ite), as.integer(nj), 
       as.integer(p), as.double(beta0), DUP = FALSE)
   .C("gaulep", as.double(x), as.double(y), as.double(ls[i]), as.double(kappa), 
       as.double(tol), as.integer(max.ite), as.integer(n), as.integer(p), 
       as.double(beta0), DUP = FALSE)
   .C("binlep", as.double(x), as.double(y), as.double(ls[i]), as.double(kappa), 
       as.double(tol), as.integer(max.ite), as.integer(n), as.integer(p), 
       as.double(beta0), DUP = FALSE)
DUP is no longer supported and will be ignored.
SetLambda: no visible global function definition for ‘lm’
Undefined global functions or variables:
  lm
Consider adding
  importFrom("stats", "lm")
to your NAMESPACE file.
File ‘glmlep/libs/glmlep.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 39.3Mb
  sub-directories of 1Mb or more:
    libs  38.6Mb
installed size is 54.2Mb
  sub-directories of 1Mb or more:
    libs  53.3Mb
Found the following significant warnings:
  glmmTMB.cpp:845:10: warning: explicitly assigning value of variable of type 'vector<Type>' to itself [-Wself-assign-overloaded]
See ‘/data/gannet/ripley/R/packages/tests-clang/glmmTMB.Rcheck/00install.out’ for details.
installed size is 47.4Mb
  sub-directories of 1Mb or more:
    libs  46.2Mb
Rd file 'glmulti.Rd':
  \usage lines wider than 90 characters:
     glmulti(y, xr, data, exclude = c(), name = "glmulti.analysis", intercept = TRUE, marginality = FALSE, bunch=30, chunk = 1, chunks = 1,
                     level = 2, minsize = 0, maxsize = -1, minK = 0, maxK = -1, method = "h", crit = "aic", confsetsize = 100, popsize = 100 ... [TRUNCATED]
  \examples lines wider than 100 characters:
     # It explains the general approach and shows how to use glmulti with mixed models from the lme4 package.
     # this procedure allows support of arbitrarily any fitting function, or the use of sophisticated constraints on the model structure

Rd file 'write.Rd':
  \usage lines wider than 90 characters:
     write(x, file = "data", ncolumns = if (is.character(x)) 1 else 5, append = FALSE, sep = " ")

These lines will be truncated in the PDF manual.
globalboosttest: no visible global function definition for ‘predict’
globalboosttest: no visible global function definition for ‘lm’
globalboosttest: no visible global function definition for ‘glm’
globalboosttest: no visible binding for global variable ‘binomial’
globalboosttest: no visible global function definition for ‘points’
globalboosttest: no visible global function definition for ‘AIC’
Undefined global functions or variables:
  AIC binomial glm lm points predict
Consider adding
  importFrom("graphics", "points")
  importFrom("stats", "AIC", "binomial", "glm", "lm", "predict")
to your NAMESPACE file.
prepare_Rd: globalboosttest.Rd:56: Dropping empty section \seealso
Rd file 'globalboosttest.Rd':
  \usage lines wider than 90 characters:
     globalboosttest(X,Y,Z=NULL,nperm=1000,mstop=1000,mstopAIC=FALSE,pvalueonly=TRUE,plot=FALSE,...)

These lines will be truncated in the PDF manual.
Package suggested but not available for checking: ‘cplexAPI’
File ‘globalOptTests/libs/globalOptTests.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
ScoreTest: no visible global function definition for ‘pchisq’
Var1: no visible global function definition for ‘runif’
gLRT1: no visible global function definition for ‘pchisq’
gLRT2: no visible global function definition for ‘pchisq’
gLRT3: no visible global function definition for ‘pchisq’
gLRT4: no visible global function definition for ‘pf’
Undefined global functions or variables:
  pchisq pf runif
Consider adding
  importFrom("stats", "pchisq", "pf", "runif")
to your NAMESPACE file.
Namespaces in Imports field not imported from:
  ‘rworldmap’ ‘shape’
  All declared Imports should be used.
plot.bGAMM: no visible global function definition for ‘par’
plot.bGAMM: no visible global function definition for ‘plot’
plot.bGAMM: no visible global function definition for ‘lines’
plot.bGAMM: no visible global function definition for ‘rug’
Undefined global functions or variables:
  lines par plot rug
Consider adding
  importFrom("graphics", "lines", "par", "plot", "rug")
to your NAMESPACE file.
File ‘gMWT/libs/gMWT.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘gnlm/libs/gnlm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following significant warnings:
  Evaluation.cpp:173:9: warning: reference cannot be bound to dereferenced null pointer in well-defined C++ code; comparison may be assumed to always evaluate to true [-Wtautological-undefined-compare]
See ‘/data/gannet/ripley/R/packages/tests-clang/gnmf.Rcheck/00install.out’ for details.
File ‘gnmf/libs/gnmf.so’:
  Found ‘rand’, possibly from ‘rand’ (C)
    Object: ‘FactorMatrix.o’
  Found ‘srand’, possibly from ‘srand’ (C)
    Object: ‘FactorMatrix.o’
File ‘gnmf/libs/gnmf.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.
It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Package in Depends field not imported from: ‘lpSolve’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Found the following apparent S3 methods exported but not registered:
  print.llgpcptab print.llgpout print.llgptab
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
prepare_Rd: llgpcp.Rd:45-46: Dropping empty section \examples
Rd file 'llgpcp.Rd':
  \usage lines wider than 90 characters:
     llgpcp(coefficients, targets, achievements, variable.classes, maxiter = 1000, verbose = FALSE)

These lines will be truncated in the PDF manual.
S3 methods shown with full name in documentation object 'print.llgpcptab':
  ‘print.llgpcptab’

S3 methods shown with full name in documentation object 'print.llgpout':
  ‘print.llgpout’

S3 methods shown with full name in documentation object 'print.llgptab':
  ‘print.llgptab’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Namespace in Imports field not imported from: ‘cluster’
  All declared Imports should be used.
'library' or 'require' calls in package code:
  ‘lava’ ‘numDeriv’ ‘survival’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
cumres.lvmfit : myres: no visible global function definition for ‘vars’
cumres.lvmfit: no visible global function definition for ‘iid’
plot.cumres : sampleproc: no visible global function definition for
  ‘lines’
plot.cumres : predband : <anonymous>: no visible binding for global
  variable ‘rgb’
plot.cumres : predband : <anonymous>: no visible global function
  definition for ‘col2rgb’
plot.cumres : predband: no visible global function definition for
  ‘lines’
plot.cumres : predband: no visible global function definition for
  ‘polygon’
Undefined global functions or variables:
  col2rgb iid lines polygon rgb vars
Consider adding
  importFrom("grDevices", "col2rgb", "rgb")
  importFrom("graphics", "lines", "polygon")
to your NAMESPACE file.
File ‘gof/libs/gof.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'library' or 'require' calls to packages already attached by Depends:
  ‘GANPA’ ‘WGCNA’
  Please remove these calls from your code.
Packages in Depends field not imported from:
  ‘GANPA’ ‘WGCNA’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
GOGANPA: no visible global function definition for ‘GSE.Test.Main’
selectRho: no visible global function definition for
  ‘scaleFreeFitIndex’
Undefined global functions or variables:
  GSE.Test.Main scaleFreeFitIndex
Packages in Depends field not imported from:
  ‘fGarch’ ‘fastICA’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
UprodR: no visible global function definition for ‘combn’
goinit: no visible global function definition for ‘as.formula’
ccor,GoGARCH : <anonymous>: no visible global function definition for
  ‘cov2cor’
ccor,Gopredict : <anonymous>: no visible global function definition for
  ‘cov2cor’
goest,Goestica: no visible global function definition for ‘fastICA’
goest,Goestml: no visible global function definition for ‘nlminb’
goest,Goestmm : <anonymous>: no visible global function definition for
  ‘combn’
goest,Goestnls: no visible global function definition for ‘optim’
show,Goinit: no visible global function definition for ‘head’
show,Gopredict: no visible global function definition for ‘head’
update,GoGARCH: no visible global function definition for
  ‘update.formula’
update,Goestica: no visible global function definition for
  ‘update.formula’
update,Goestml: no visible global function definition for
  ‘update.formula’
update,Goestmm: no visible global function definition for
  ‘update.formula’
update,Goestnls: no visible global function definition for
  ‘update.formula’
Undefined global functions or variables:
  as.formula combn cov2cor fastICA head nlminb optim update.formula
Consider adding
  importFrom("stats", "as.formula", "cov2cor", "nlminb", "optim",
             "update.formula")
  importFrom("utils", "combn", "head")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
gpairs: no visible global function definition for ‘hclust’
gpairs: no visible global function definition for ‘dist’
gpairs : scatterplot.panel: no visible global function definition for
  ‘lm’
gpairs : scatterplot.panel: no visible global function definition for
  ‘predict’
gpairs : scatterplot.panel: no visible global function definition for
  ‘prcomp’
gpairs : scatterplot.panel: no visible global function definition for
  ‘cor’
gpairs : scatterplot.panel: no visible global function definition for
  ‘cor.test’
gpairs : scatterplot.panel: no visible global function definition for
  ‘hsv’
gpairs : scatterplot.panel: no visible global function definition for
  ‘na.omit’
gpairs : scatterplot.panel: no visible global function definition for
  ‘pf’
gpairs : scatterplot.panel: no visible global function definition for
  ‘grey’
Undefined global functions or variables:
  cor cor.test dist grey hclust hsv lm na.omit pf prcomp predict
Consider adding
  importFrom("grDevices", "grey", "hsv")
  importFrom("stats", "cor", "cor.test", "dist", "hclust", "lm",
             "na.omit", "pf", "prcomp", "predict")
to your NAMESPACE file.
File ‘GPB/libs/GPB.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Warning: no function found corresponding to methods exports from ‘gpclib’ for: ‘coerce’, ‘show’

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
read.polyfile: no visible global function definition for ‘as’
write.polyfile: no visible global function definition for ‘is’
write.polyfile: no visible global function definition for ‘as’
[,gpc.poly: no visible global function definition for ‘new’
append.poly,gpc.poly-gpc.poly: no visible global function definition
  for ‘new’
coerce,data.frame-gpc.poly: no visible global function definition for
  ‘as’
coerce,list-gpc.poly: no visible global function definition for ‘as’
coerce,matrix-gpc.poly: no visible global function definition for ‘new’
coerce,numeric-gpc.poly: no visible global function definition for
  ‘new’
coerce,numeric-gpc.poly.nohole: no visible global function definition
  for ‘new’
intersect,gpc.poly-gpc.poly: no visible global function definition for
  ‘as’
intersect,gpc.poly-gpc.poly: no visible global function definition for
  ‘new’
setdiff,gpc.poly-gpc.poly: no visible global function definition for
  ‘as’
setdiff,gpc.poly-gpc.poly: no visible global function definition for
  ‘new’
tristrip,gpc.poly: no visible global function definition for ‘as’
union,gpc.poly-gpc.poly: no visible global function definition for ‘as’
union,gpc.poly-gpc.poly: no visible global function definition for
  ‘new’
Undefined global functions or variables:
  as is new
Consider adding
  importFrom("methods", "as", "is", "new")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
File ‘gpclib/libs/gpclib.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Resdata : prepdata: no visible global function definition for ‘sqldf’
gpca : Build3d: no visible global function definition for ‘dev.new’
gpca : Build3d: no visible global function definition for
  ‘scatterplot3d’
gpca : Build3d: no visible global function definition for ‘text’
gpca : Build3d: no visible global function definition for ‘plot’
gpca : Build3d: no visible global function definition for ‘abline’
gpca : Build3d: no visible global function definition for ‘rect’
gpca: no visible global function definition for ‘cor’
gpca: no visible global function definition for ‘dev.new’
gpca: no visible global function definition for ‘plot’
gpca: no visible global function definition for ‘text’
gpca: no visible global function definition for ‘abline’
gpca: no visible global function definition for ‘rect’
gpca: no visible global function definition for ‘scatterplot3d’
gpca: no visible global function definition for ‘segments’
gpca: no visible global function definition for ‘points’
gpca: no visible global function definition for ‘write.table’
Undefined global functions or variables:
  abline cor dev.new plot points rect scatterplot3d segments sqldf text
  write.table
Consider adding
  importFrom("grDevices", "dev.new")
  importFrom("graphics", "abline", "plot", "points", "rect", "segments",
             "text")
  importFrom("stats", "cor")
  importFrom("utils", "write.table")
to your NAMESPACE file.
Missing or unexported object: ‘TSA::tsdiag.Arima’
gpfr: no visible global function definition for ‘rnorm’
gpfr: no visible global function definition for ‘runif’
gpfrpred : <anonymous>: no visible global function definition for
  ‘predict’
gpfrtrain: no visible global function definition for ‘nlminb’
gppredict: no visible global function definition for ‘predict’
gpr: no visible global function definition for ‘rnorm’
gpr: no visible global function definition for ‘runif’
gpr: no visible global function definition for ‘lm’
gpr: no visible global function definition for ‘resid’
gpr: no visible global function definition for ‘nlminb’
main1: no visible global function definition for ‘lm’
main1: no visible global function definition for ‘resid’
main2 : <anonymous>: no visible global function definition for
  ‘predict’
main2: no visible global function definition for ‘predict’
main3: no visible global function definition for ‘lm’
main3: no visible global function definition for ‘resid’
plot.gpfr: no visible global function definition for ‘polygon’
plot.gpfr: no visible global function definition for ‘rgb’
plot.gpfr: no visible global function definition for ‘matpoints’
plot.gpfr: no visible global function definition for ‘matlines’
plot.gpfr: no visible global function definition for ‘lines’
plot.gpr: no visible global function definition for ‘plot’
plot.gpr: no visible global function definition for ‘polygon’
plot.gpr: no visible global function definition for ‘rgb’
plot.gpr: no visible global function definition for ‘points’
plot.gpr: no visible global function definition for ‘lines’
Undefined global functions or variables:
  lines lm matlines matpoints nlminb plot points polygon predict resid
  rgb rnorm runif
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("graphics", "lines", "matlines", "matpoints", "plot",
             "points", "polygon")
  importFrom("stats", "lm", "nlminb", "predict", "resid", "rnorm",
             "runif")
to your NAMESPACE file.
GP_fit: no visible global function definition for ‘kmeans’
GP_fit: no visible global function definition for ‘optim’
plot.GP: no visible global function definition for ‘matplot’
plot.GP: no visible global function definition for ‘lines’
plot.GP: no visible global function definition for ‘legend’
Undefined global functions or variables:
  kmeans legend lines matplot optim
Consider adding
  importFrom("graphics", "legend", "lines", "matplot")
  importFrom("stats", "kmeans", "optim")
to your NAMESPACE file.
File ‘gplm/libs/gplm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following apparent S3 methods exported but not registered:
  boxplot.n plot.lm2
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Packages in Depends field not imported from:
  ‘foreach’ ‘ggplot2’ ‘isotone’ ‘plyr’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
installed size is  5.7Mb
  sub-directories of 1Mb or more:
    data   1.5Mb
    doc    4.0Mb
installed size is 25.9Mb
  sub-directories of 1Mb or more:
    R  25.8Mb
File ‘gRain/libs/gRain.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘GrammR/libs/GrammR.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'library' or 'require' calls in package code:
  ‘mgcv’ ‘rgl’ ‘tcltk’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
KL: no visible global function definition for ‘complete.cases’
MergeNodes: no visible global function definition for ‘colors’
cross.validate: no visible global function definition for ‘runif’
fit.APFA: no visible global function definition for ‘complete.cases’
fit.APFA: no visible global function definition for ‘aggregate’
select.beagle: no visible global function definition for ‘write.table’
select.beagle: no visible global function definition for ‘aggregate’
select.beagle: no visible global function definition for ‘colors’
simulateAPFA: no visible global function definition for ‘runif’
st: no visible global function definition for ‘colors’
Undefined global functions or variables:
  aggregate colors complete.cases runif write.table
Consider adding
  importFrom("grDevices", "colors")
  importFrom("stats", "aggregate", "complete.cases", "runif")
  importFrom("utils", "write.table")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘reshape2’
  All declared Imports should be used.
installed size is 11.7Mb
  sub-directories of 1Mb or more:
    libs  11.5Mb
File ‘graphscan/libs/graphscan.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Package in Depends field not imported from: ‘Matrix’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
GrassmannOptim: no visible global function definition for ‘rnorm’
GrassmannOptim: no visible global function definition for ‘runif’
GrassmannOptim : <anonymous>: no visible global function definition for
  ‘expm’
GrassmannOptim : <anonymous>: no visible global function definition for
  ‘Matrix’
Undefined global functions or variables:
  Matrix expm rnorm runif
Consider adding
  importFrom("stats", "rnorm", "runif")
to your NAMESPACE file.
installed size is 14.3Mb
  sub-directories of 1Mb or more:
    libs  12.3Mb
installed size is  6.5Mb
  sub-directories of 1Mb or more:
    data   6.3Mb
accrualReport: multiple local function definitions for ‘gg’ with
  different formal arguments
bestcut2: no visible global function definition for ‘pchisq’
cov.func: no visible global function definition for ‘rbinom’
cov.func: no visible global function definition for ‘cov’
cov.func: no visible global function definition for ‘pnorm’
cox.summary: no visible global function definition for ‘predict’
em.func: no visible global function definition for ‘quantile’
genSurvData: no visible global function definition for ‘rweibull’
greyzone.func: no visible global function definition for ‘points’
greyzone.func: no visible global function definition for ‘abline’
Undefined global functions or variables:
  abline cov pchisq pnorm points predict quantile rbinom rweibull
Consider adding
  importFrom("graphics", "abline", "points")
  importFrom("stats", "cov", "pchisq", "pnorm", "predict", "quantile",
             "rbinom", "rweibull")
to your NAMESPACE file.
installed size is 14.2Mb
  sub-directories of 1Mb or more:
    libs  14.0Mb
grid.graph: no visible global function definition for ‘is’
Undefined global functions or variables:
  is
Consider adding
  importFrom("methods", "is")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Namespace in Imports field not imported from: ‘BiasedUrn’
  All declared Imports should be used.
Package in Depends field not imported from: ‘spatstat’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
GriegSmith: no visible global function definition for ‘is.ppp’
envelopes: no visible binding for global variable ‘quantile’
plot.GriegSmith: no visible global function definition for ‘plot’
plot.GriegSmith: no visible global function definition for ‘lines’
plot.GriegSmith: no visible global function definition for ‘axis’
Undefined global functions or variables:
  axis is.ppp lines plot quantile
Consider adding
  importFrom("graphics", "axis", "lines", "plot")
  importFrom("stats", "quantile")
to your NAMESPACE file.
Rd file 'GriegSmith.Rd':
  \examples lines wider than 100 characters:
                     if (max(datapoints[,1]) != max(datapoints[,2])) stop("Your count data must have equal dimensions")

Rd file 'belongtoint.Rd':
  \examples lines wider than 100 characters:
             sum(vect[,1] >= xval & vect[,1] < (xval+int.x) & vect[,2] >= yval & vect[,2] < (yval+int.y));

Rd file 'envelopes.Rd':
  \examples lines wider than 100 characters:
                     perm<-matrix(sample(as.vector(countdata),size=2^(dimention*2),replace=FALSE),nrow=2^dimention,byrow=TRUE);
             ret.val<-cbind(apply(GSpermprev[,-1],1,quantile,probs=c(.05)),apply(GSpermprev[,-1],1,quantile,probs=c(.95)))

Rd file 'sumofsquares.Rd':
  \examples lines wider than 100 characters:
             squaredsums<-sum(apply(submatricies,1,addem,data=singlecounts,xmatlen=xsublength,ymatlen=ysublength));

Rd file 'sums.Rd':
  \usage lines wider than 90 characters:
     sums(coords, dim, xmin = min(coords[, 1]), xmax = max(coords[, 1]), ymin = min(coords[, 2]), ymax = max(coords[, 2]))
  \examples lines wider than 100 characters:
     function (coords,dim,xmin=min(coords[,1]),xmax=max(coords[,1]),ymin=min(coords[,2]),ymax=max(coords[,2])){
             cnts<-matrix(apply(bins,1,belongtoint,vect=coords,int.x=xints,int.y=yints),nrow=dim,byrow=TRUE);

These lines will be truncated in the PDF manual.
installed size is  9.6Mb
  sub-directories of 1Mb or more:
    libs   9.2Mb
File ‘groupRemMap/libs/groupRemMap.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 18.2Mb
  sub-directories of 1Mb or more:
    libs  17.5Mb
File ‘growcurves/libs/growcurves.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 16.0Mb
  sub-directories of 1Mb or more:
    libs  15.6Mb
File ‘growth/libs/growth.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘grr/libs/grr.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
PCgamma : <anonymous>: no visible global function definition for
  ‘prcomp’
PCgamma : <anonymous> : <anonymous>: no visible global function
  definition for ‘glm’
PCgamma : <anonymous> : <anonymous>: no visible global function
  definition for ‘update’
PCgamma : <anonymous> : <anonymous>: no visible global function
  definition for ‘pchisq’
PCgamma : <anonymous> : <anonymous>: no visible global function
  definition for ‘lm’
PCgamma : <anonymous> : <anonymous>: no visible global function
  definition for ‘anova’
PCgamma: no visible global function definition for ‘qgamma’
PCgamma: no visible global function definition for ‘pgamma’
RNAgamma : rnafunc: no visible global function definition for
  ‘model.matrix’
RNAgamma : rnafunc: no visible global function definition for
  ‘as.formula’
RNAgamma: no visible global function definition for ‘qgamma’
RNAgamma: no visible global function definition for ‘pgamma’
STTtoShapeParameter : f: no visible global function definition for
  ‘qgamma’
STTtoShapeParameter: no visible global function definition for
  ‘optimize’
Undefined global functions or variables:
  anova as.formula glm lm model.matrix optimize pchisq pgamma prcomp
  qgamma update
Consider adding
  importFrom("stats", "anova", "as.formula", "glm", "lm", "model.matrix",
             "optimize", "pchisq", "pgamma", "prcomp", "qgamma",
             "update")
to your NAMESPACE file.
garsim: no visible global function definition for ‘rnorm’
garsim: no visible global function definition for ‘rpois’
Undefined global functions or variables:
  rnorm rpois
Consider adding
  importFrom("stats", "rnorm", "rpois")
to your NAMESPACE file.
plotgsCP: no visible global function definition for ‘opts’
plotgsPower: no visible global function definition for ‘opts’
qplotit: no visible global function definition for ‘opts’
Undefined global functions or variables:
  opts
File ‘gsDesign/libs/gsDesign.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘rrcov’
  All declared Imports should be used.
File ‘GSE/libs/GSE.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
binding: no visible global function definition for ‘rnorm’
binding: no visible binding for global variable ‘var’
binding: no visible global function definition for ‘uniroot’
equivonly: no visible global function definition for ‘rnorm’
equivonly: no visible binding for global variable ‘var’
equivonly: no visible global function definition for ‘uniroot’
figureE: no visible global function definition for ‘rgb’
figureEF: no visible global function definition for ‘rgb’
nfix : f: no visible global function definition for ‘pnorm’
nfix : f: no visible global function definition for ‘qnorm’
nfix: no visible global function definition for ‘uniroot’
nonbinding: no visible global function definition for ‘rnorm’
nonbinding: no visible binding for global variable ‘var’
nonbinding: no visible global function definition for ‘uniroot’
oc: no visible global function definition for ‘rnorm’
oc: no visible global function definition for ‘var’
Undefined global functions or variables:
  pnorm qnorm rgb rnorm uniroot var
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("stats", "pnorm", "qnorm", "rnorm", "uniroot", "var")
to your NAMESPACE file.
File ‘gsl/libs/gsl.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘gsmoothr/libs/gsmoothr.so’:
  Found no call to: ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘gsscopu/libs/gsscopu.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
gte: no visible global function definition for ‘model.extract’
gte: no visible global function definition for ‘model.matrix’
gte: no visible binding for global variable ‘sd’
gte: no visible global function definition for ‘dnorm’
plot.gte: no visible global function definition for ‘plot’
plot.gte: no visible global function definition for ‘par’
plot.gte: no visible global function definition for ‘polygon’
plot.gte: no visible global function definition for ‘gray’
plot.gte: no visible global function definition for ‘lines’
plot.gte: no visible global function definition for ‘legend’
Undefined global functions or variables:
  dnorm gray legend lines model.extract model.matrix par plot polygon
  sd
Consider adding
  importFrom("grDevices", "gray")
  importFrom("graphics", "legend", "lines", "par", "plot", "polygon")
  importFrom("stats", "dnorm", "model.extract", "model.matrix", "sd")
to your NAMESPACE file.
File ‘gte/libs/gte.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following possibly unsafe calls:
File ‘gtools/R/unByteCode.R’:
  unlockBinding(name, env = env)
File ‘GUILDS/libs/GUILDS.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘GWASExactHW/libs/GWASExactHW.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
calculate.threshold: no visible global function definition for ‘pchisq’
gwerAM: no visible global function definition for ‘rnorm’
gwerAM: no visible binding for global variable ‘quantile’
Undefined global functions or variables:
  pchisq quantile rnorm
Consider adding
  importFrom("stats", "pchisq", "quantile", "rnorm")
to your NAMESPACE file.
File ‘gwfa/libs/gwfa.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
browseDataAsCSV: no visible global function definition for ‘write.csv’
browseDataAsCSV: no visible global function definition for ‘browseURL’
tcltkDialog: no visible global function definition for ‘runif’
tl_get_column_name: no visible global function definition for ‘tail’
.add,gTexttcltk-guiWidgetsToolkittcltk-character: no visible global
  function definition for ‘rnorm’
.font<-,gTexttcltk-guiWidgetsToolkittcltk: no visible global function
  definition for ‘rnorm’
.font<-,tcltkObject-guiWidgetsToolkittcltk: no visible global function
  definition for ‘rnorm’
.gdf,guiWidgetsToolkittcltk: no visible global function definition for
  ‘head’
.visible<-,gGraphicstcltk-guiWidgetsToolkittcltk-ANY: no visible global
  function definition for ‘dev.set’
Undefined global functions or variables:
  browseURL dev.set head rnorm runif tail write.csv
Consider adding
  importFrom("grDevices", "dev.set")
  importFrom("stats", "rnorm", "runif")
  importFrom("utils", "browseURL", "head", "tail", "write.csv")
to your NAMESPACE file.
Namespaces in Imports field not imported from:
  ‘doParallel’ ‘foreach’ ‘methods’
  All declared Imports should be used.
'library' or 'require' calls to packages already attached by Depends:
  ‘fields’ ‘lars’
  Please remove these calls from your code.
Package in Depends field not imported from: ‘lars’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
gwl.beta: no visible global function definition for ‘lars’
gwl.cv.err: no visible global function definition for ‘lars’
gwl.est: no visible global function definition for ‘lm’
gwr.bw.est: no visible global function definition for ‘lm’
gwr.est: no visible global function definition for ‘lm’
gwr.rsquare: no visible global function definition for ‘cor’
gwrr.est: no visible global function definition for ‘lm’
Undefined global functions or variables:
  cor lars lm
Consider adding
  importFrom("stats", "cor", "lm")
to your NAMESPACE file.
GxMestimator: no visible global function definition for ‘na.omit’
initialization_chol: no visible global function definition for ‘cov’
initialization_corr: no visible global function definition for ‘cov’
initialization_nlmain: no visible global function definition for
  ‘lm.fit’
print.summaryGxMclass: no visible global function definition for
  ‘pnorm’
print.summaryGxMclass: no visible global function definition for
  ‘printCoefmat’
Undefined global functions or variables:
  cov lm.fit na.omit pnorm printCoefmat
Consider adding
  importFrom("stats", "cov", "lm.fit", "na.omit", "pnorm",
             "printCoefmat")
to your NAMESPACE file.
File ‘gyriq/libs/gyriq.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 132.4Mb
  sub-directories of 1Mb or more:
    java  130.6Mb
hf.bt: no visible global function definition for ‘median’
Undefined global functions or variables:
  median
Consider adding
  importFrom("stats", "median")
to your NAMESPACE file.
Found the following apparent S3 methods exported but not registered:
  print.hankeltest
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
.hankel.critValExp: no visible global function definition for
  ‘quantile’
Undefined global functions or variables:
  quantile
Consider adding
  importFrom("stats", "quantile")
to your NAMESPACE file.
File ‘Hankel/libs/Hankel.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
EMvar: no visible global function definition for ‘model.matrix’
RecodeHaplos: no visible global function definition for ‘na.omit’
RecodeHaplos: no visible global function definition for ‘tail’
anova.hapassoc: no visible global function definition for ‘pchisq’
handleMissings: no visible global function definition for ‘na.omit’
hapassoc: no visible global function definition for ‘binomial’
hapassoc: no visible global function definition for ‘formula’
hapassoc: no visible global function definition for ‘glm’
hapassoc : <anonymous>: no visible global function definition for ‘glm’
hapassoc: no visible global function definition for ‘model.frame’
hapassoc: no visible global function definition for ‘model.matrix’
hapassoc: no visible binding for global variable ‘contrasts’
hapassoc: no visible global function definition for ‘glm.control’
hapassoc : <anonymous>: no visible global function definition for
  ‘glm.control’
probY: no visible global function definition for ‘dbinom’
probY: no visible global function definition for ‘dpois’
probY: no visible global function definition for ‘dnorm’
probY: no visible global function definition for ‘dgamma’
summary.hapassoc: no visible global function definition for ‘pchisq’
Undefined global functions or variables:
  binomial contrasts dbinom dgamma dnorm dpois formula glm glm.control
  model.frame model.matrix na.omit pchisq tail
Consider adding
  importFrom("stats", "binomial", "contrasts", "dbinom", "dgamma",
             "dnorm", "dpois", "formula", "glm", "glm.control",
             "model.frame", "model.matrix", "na.omit", "pchisq")
  importFrom("utils", "tail")
to your NAMESPACE file.
File ‘hapassoc/libs/hapassoc.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘HapEstXXR/libs/HapEstXXR.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  9.8Mb
  sub-directories of 1Mb or more:
    data   9.4Mb
clustersG: no visible global function definition for ‘combn’
pairneidist: no visible global function definition for ‘as.dist’
pairneidist: no visible global function definition for ‘combn’
steplimit : .TempletonProb: no visible global function definition for
  ‘integrate’
distance,Dna: no visible global function definition for ‘dist’
distance,Dna: no visible global function definition for ‘combn’
distance,Dna: no visible global function definition for ‘as.dist’
pairnei,matrix: no visible global function definition for ‘as.dist’
show,Dna: no visible global function definition for ‘head’
Undefined global functions or variables:
  as.dist combn dist head integrate
Consider adding
  importFrom("stats", "as.dist", "dist", "integrate")
  importFrom("utils", "combn", "head")
to your NAMESPACE file.
'library' or 'require' call to ‘ape’ which was already attached by Depends.
  Please remove these calls from your code.
Packages in Depends field not imported from:
  ‘ape’ ‘hash’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Rd file 'HAP.ROR-package.Rd':
  \examples lines wider than 100 characters:
     ODS.ror(case.sub=case.sub, ctl.sub=ctl.sub, lib.sub=lib.sub, lib.sub.names=lib.sub.names, records=ror.res$records, dev.list=ror.res$dev ... [TRUNCATED]

Rd file 'HAP.ror.Rd':
  \usage lines wider than 90 characters:
     HAP.ror(case.sub, ctl.sub, lib.sub, lib.sub.names, alpha = 0.01, ref.level = NA, display.proc = TRUE)

Rd file 'ODS.ror.Rd':
  \usage lines wider than 90 characters:
     ODS.ror(case.sub, ctl.sub, lib.sub, lib.sub.names, records, dev.list, AIC.list, deleted.snps.ls, proteinf, locus = "DRB1*", ref.level = ... [TRUNCATED]
  \examples lines wider than 100 characters:
     ODS.ror(case.sub=case.sub, ctl.sub=ctl.sub, lib.sub=lib.sub, lib.sub.names=lib.sub.names, records=ror.res$records, dev.list=ror.res$dev ... [TRUNCATED]

Rd file 'cc.sim.Rd':
  \usage lines wider than 90 characters:
     cc.sim(n.ctrl, n.case, beta0, beta1, case.sub, ctl.sub, lib.sub, lib.sub.names, risk.type = "AA", risk.inx = 2, risk.names = c("301", " ... [TRUNCATED]

Rd file 'deletion.Rd':
  \usage lines wider than 90 characters:
     deletion(lib, lib.names, case.sub, ctl.sub, aic.now, dev.now, df.now, rank = FALSE, cut = -1, delete.snp = -1, ref = "NA", alpha = 0.05 ... [TRUNCATED]

These lines will be truncated in the PDF manual.
File ‘hashFunction/libs/hashFunction.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 19.4Mb
  sub-directories of 1Mb or more:
    libs  18.8Mb
File ‘hashr/libs/hashr.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘hawkes/libs/hawkes.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
extract_hazus_functions: no visible global function definition for
  ‘data’
Undefined global functions or variables:
  data
Consider adding
  importFrom("utils", "data")
to your NAMESPACE file.
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    R            1.5Mb
    extdata      1.2Mb
    stan_files   2.8Mb
detect.movement: no visible global function definition for ‘t.test’
generate.random.conf: no visible global function definition for ‘rnorm’
Undefined global functions or variables:
  rnorm t.test
Consider adding
  importFrom("stats", "rnorm", "t.test")
to your NAMESPACE file.
Rd file 'fSAE.Rd':
  \examples lines wider than 100 characters:
     est.global <- fSAE(y0 ~ x + area2, data=d$sam, area=NULL, popdata=colSums(d$Xpop), method="synthetic")

Rd file 'plot.sae.Rd':
  \usage lines wider than 90 characters:
         main = switch(type, coef = "coefficients", raneff = "random effects", "SAE estimates"),

Rd file 'uweights.Rd':
  \examples lines wider than 100 characters:
     sae <- fSAE(y0 ~ x + area2, data=d$sam, area="area", popdata=d$Xpop, method="hybrid", keep.data=TRUE)

These lines will be truncated in the PDF manual.
installed size is 10.1Mb
  sub-directories of 1Mb or more:
    data  10.0Mb
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    libs   1.3Mb
File ‘HDGLM/libs/HDGLM.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘hdlm/libs/hdlm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Promax.only: no visible global function definition for ‘lm.fit’
factor.pa.ginv: no visible binding for global variable ‘median’
factor.pa.ginv: no visible global function definition for ‘cor’
factor.pa.ginv: no visible global function definition for ‘varimax’
factor.pa.ginv: no visible global function definition for ‘pchisq’
pairwise.mahalanobis: no visible global function definition for ‘cor’
pairwise.mahalanobis: no visible global function definition for
  ‘mahalanobis’
Undefined global functions or variables:
  cor lm.fit mahalanobis median pchisq varimax
Consider adding
  importFrom("stats", "cor", "lm.fit", "mahalanobis", "median", "pchisq",
             "varimax")
to your NAMESPACE file.
Rd file 'AminoAcids.Rd':
  \examples lines wider than 100 characters:
     Factor54 = factor.pa.ginv(AA54, nfactors = 5, m=3, prerotate=TRUE, rotate="Promax", scores="regression")
       Factor3d =scatterplot3d(Factor54$scores[,1:3], pch = AminoAcids, main="Factor Scores", box = FALSE, grid=FALSE, xlab="pah", ylab="pss ... [TRUNCATED]
       legend(x=5, y=4.5, legend=c("hydrophobic", "polar", "small"), col=c("blue", "green", "orange"), pch=21, box.lty =0)

Rd file 'FactorTransform.Rd':
  \usage lines wider than 90 characters:
     FactorTransform(Source, Search = AminoAcids, Replace = AAMetric.Atchley, Factor = 1, bycol = TRUE, SeqName = NULL,  alignment=FALSE, fi ... [TRUNCATED]

Rd file 'HDMD-package.Rd':
  \examples lines wider than 100 characters:
     Factor54 = factor.pa.ginv(AA54, nfactors = 5, m=3, prerotate=TRUE, rotate="Promax", scores="regression")
     plot(-1*AA54_lda_RawMetric1Centered[,1], -1*AA54_lda_RawMetric1Centered[,2], pch = grouping, xlab="Canonical Variate 1", ylab="Canonica ... [TRUNCATED]

Rd file 'NMI.Rd':
  \usage lines wider than 90 characters:
     NMI(Hx, Hy, Hxy, type = c("NULL", "marginal", "joint", "min.marginal", "max.marginal", "min.conditional", "max.conditional"))

Rd file 'factor.pa.ginv.Rd':
  \usage lines wider than 90 characters:
     factor.pa.ginv(r, nfactors = 1, residuals = FALSE, prerotate = FALSE, rotate = "varimax", m = 4, n.obs = NA, scores = c("none", "regres ... [TRUNCATED]
  \examples lines wider than 100 characters:
     Factor54 = factor.pa.ginv(AA54, nfactors = 5, m=3, prerotate=TRUE, rotate="Promax", scores="regression")
       Factor3d =scatterplot3d(Factor54$scores[,1:3], pch = AminoAcids, main="Factor Scores", box = FALSE, grid=FALSE, xlab="pah", ylab="pss ... [TRUNCATED]
       legend(x=5, y=4.5, legend=c("hydrophobic", "polar", "small"), col=c("blue", "green", "orange"), pch=21, box.lty =0)

These lines will be truncated in the PDF manual.
installed size is 23.4Mb
  sub-directories of 1Mb or more:
    libs  23.0Mb
coef.HDtweedie: no visible global function definition for ‘rbind2’
coef.cv.HDtweedie: no visible global function definition for ‘coef’
cv.tweediegrppath: no visible global function definition for ‘predict’
cv.tweediegrppath: no visible binding for global variable
  ‘weighted.mean’
cvcompute: no visible binding for global variable ‘weighted.mean’
error.bars: no visible global function definition for ‘segments’
lambda.interp: no visible global function definition for ‘approx’
plot.HDtweedie: no visible global function definition for ‘par’
plot.HDtweedie: no visible binding for global variable ‘plot.default’
plot.HDtweedie: no visible global function definition for ‘gray.colors’
plot.HDtweedie: no visible global function definition for ‘abline’
plot.cv.HDtweedie: no visible global function definition for ‘points’
plot.cv.HDtweedie: no visible global function definition for ‘axis’
plot.cv.HDtweedie: no visible global function definition for ‘abline’
predict.HDtweedie: no visible global function definition for ‘rbind2’
predict.HDtweedie: no visible global function definition for ‘cbind2’
predict.cv.HDtweedie: no visible global function definition for
  ‘predict’
Undefined global functions or variables:
  abline approx axis cbind2 coef gray.colors par plot.default points
  predict rbind2 segments weighted.mean
Consider adding
  importFrom("grDevices", "gray.colors")
  importFrom("graphics", "abline", "axis", "par", "plot.default",
             "points", "segments")
  importFrom("methods", "cbind2", "rbind2")
  importFrom("stats", "approx", "coef", "predict", "weighted.mean")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
File ‘HDtweedie/libs/HDtweedie.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    doc   4.6Mb
Running examples in ‘hetGP-Ex.R’ failed
The error most likely occurred in:

> ### Name: LOO_preds
> ### Title: Leave one out predictions
> ### Aliases: LOO_preds
> 
> ### ** Examples
> 
> set.seed(32)
> ## motorcycle data
> library(MASS)
> X <- matrix(mcycle$times, ncol = 1)
> Z <- mcycle$accel
> nvar <- 1
> plot(X, Z, ylim = c(-160, 90), ylab = 'acceleration', xlab = "time")
> 
> ## Model fitting
> model <- mleHomGP(X = X, Z = Z, lower = rep(0.1, nvar), upper = rep(50, nvar),
+                   covtype = "Matern5_2", known = list(beta0 = 0))
Error in chol.default(C + diag(eps + g/mult)) : 
  the leading minor of order 26 is not positive definite
Calls: mleHomGP ... <Anonymous> -> fn -> logLikHom -> chol -> chol.default
Execution halted
Warning: no function found corresponding to methods exports from ‘het.test’ for: ‘show’

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Packages in Depends field not imported from:
  ‘methods’ ‘vars’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
whites.htest: no visible global function definition for ‘residuals’
whites.htest: no visible global function definition for ‘lm’
whites.htest: no visible global function definition for ‘pchisq’
whites.htest: no visible global function definition for ‘new’
Undefined global functions or variables:
  lm new pchisq residuals
Consider adding
  importFrom("methods", "new")
  importFrom("stats", "lm", "pchisq", "residuals")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Packages in Depends field not imported from:
  ‘grplasso’ ‘lattice’ ‘rgl’ ‘splines’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
HubNetwork: no visible global function definition for ‘rbinom’
HubNetwork: no visible global function definition for ‘runif’
HubNetwork: no visible global function definition for ‘cov2cor’
binaryMCMC: no visible global function definition for ‘rbinom’
image.hbn: no visible global function definition for ‘col2rgb’
image.hbn: no visible global function definition for ‘rgb’
image.hbn: no visible global function definition for ‘dev.new’
image.hbn: no visible global function definition for ‘par’
image.hbn: no visible global function definition for ‘image’
image.hcov: no visible global function definition for ‘col2rgb’
image.hcov: no visible global function definition for ‘rgb’
image.hcov: no visible global function definition for ‘dev.new’
image.hcov: no visible global function definition for ‘par’
image.hcov: no visible global function definition for ‘image’
image.hglasso: no visible global function definition for ‘col2rgb’
image.hglasso: no visible global function definition for ‘rgb’
image.hglasso: no visible global function definition for ‘dev.new’
image.hglasso: no visible global function definition for ‘par’
image.hglasso: no visible global function definition for ‘image’
plot.hbn: no visible global function definition for ‘rgb’
plot.hbn: no visible global function definition for ‘plot’
plot.hcov: no visible global function definition for ‘rgb’
plot.hcov: no visible global function definition for ‘plot’
plot.hglasso: no visible global function definition for ‘rgb’
plot.hglasso: no visible global function definition for ‘plot’
Undefined global functions or variables:
  col2rgb cov2cor dev.new image par plot rbinom rgb runif
Consider adding
  importFrom("grDevices", "col2rgb", "dev.new", "rgb")
  importFrom("graphics", "image", "par", "plot")
  importFrom("stats", "cov2cor", "rbinom", "runif")
to your NAMESPACE file.
Namespaces in Imports field not imported from:
  ‘memoise’ ‘ratelimitr’
  All declared Imports should be used.
File ‘HiClimR/libs/HiClimR.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘HiCseg/libs/HiCseg.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘HiDimDA/libs/HiDimDA.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Unexported objects imported by ':::' calls:
  ‘ggplot2:::build_guides’ ‘ggplot2:::guide_axis’
  ‘ggplot2:::scales_list’
  See the note in ?`:::` about the use of this operator.
File ‘hierarchicalSets/libs/hierarchicalSets.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
banded: no visible global function definition for ‘toeplitz’
gpband: no visible global function definition for ‘toeplitz’
hierband.cv: no visible global function definition for ‘cov’
hierband.cv: no visible binding for global variable ‘sd’
subdiag.thresh: no visible global function definition for ‘uniroot’
subdiag.thresh: no visible global function definition for ‘toeplitz’
Undefined global functions or variables:
  cov sd toeplitz uniroot
Consider adding
  importFrom("stats", "cov", "sd", "toeplitz", "uniroot")
to your NAMESPACE file.
File ‘hierband/libs/hierband.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
calcPower: no visible global function definition for ‘pchisq’
calcPower: no visible global function definition for ‘qchisq’
delta2 : K1: no visible global function definition for ‘qnorm’
delta2: no visible global function definition for ‘qnorm’
delta2: no visible global function definition for ‘pnorm’
delta2: no visible global function definition for ‘dnorm’
Undefined global functions or variables:
  dnorm pchisq pnorm qchisq qnorm
Consider adding
  importFrom("stats", "dnorm", "pchisq", "pnorm", "qchisq", "qnorm")
to your NAMESPACE file.
'library' or 'require' call to ‘gtools’ which was already attached by Depends.
  Please remove these calls from your code.
all.regs: no visible global function definition for ‘glm’
all.regs: no visible global function definition for ‘logLik’
combos: no visible global function definition for ‘menu’
current.model: no visible global function definition for ‘formula’
current.model: no visible global function definition for ‘glm’
current.model: no visible global function definition for ‘logLik’
current.model: no visible global function definition for ‘lm’
rand.hp: no visible global function definition for ‘runif’
rand.hp: no visible global function definition for ‘sd’
Undefined global functions or variables:
  formula glm lm logLik menu runif sd
Consider adding
  importFrom("stats", "formula", "glm", "lm", "logLik", "runif", "sd")
  importFrom("utils", "menu")
to your NAMESPACE file.
File ‘hier.part/libs/hier.part.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'library' or 'require' calls to packages already attached by Depends:
  ‘nnet’ ‘stats’
  Please remove these calls from your code.
Package in Depends field not imported from: ‘nnet’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Rd file 'HItest3.Rd':
  \examples lines wider than 100 characters:
                                                     # individuals will have nonzero contributions from each of the

Rd file 'spatial.AD.Rd':
  \examples lines wider than 100 characters:
     # simulate secondary contact by sorting aling the x dimension and assigning parental genotypes on each side of the centerline:
     # selection, inlcuding heterozygote disadvantage at locus 2 and a DM incompatibility between 3 and 4:
     G10 <- spatial.AD(minX,minY,maxX,maxY,XY,Genotypes,beta,sel,mid,h,DM,sigmac,R,M,gens=10,immigrants=TRUE)

Rd file 'spatial.HZ.Rd':
  \examples lines wider than 100 characters:
     # simulate secondary contact by sorting aling the x dimension and assigning parental genotypes on each side of the centerline:
     # selection, inlcuding heterozygote disadvantage at locus 2 and a DM incompatibility between 3 and 4:
     G10 <- spatial.HZ(minX,minY,maxX,maxY,XY,Genotypes,beta,sel,mid,h,DM,sigmad,sigmac,sigmam,R,M,gens=10,immigrants=TRUE)

Rd file 'thirdclass.Rd':
  \examples lines wider than 100 characters:
                                                     # individuals will have nonzero contributions from each of the 

These lines will be truncated in the PDF manual.
installed size is 16.6Mb
  sub-directories of 1Mb or more:
    doc          13.7Mb
    htmlwidgets   1.9Mb
CLX.sim.Covtest: no visible global function definition for ‘cov’
CLX.sim.equalcov: no visible global function definition for ‘cov’
CLX.sim.unequalcov: no visible global function definition for ‘cov’
CLX.test.equalcov: no visible global function definition for ‘cov’
CLX.test.unequalcov: no visible global function definition for ‘cov’
ChenQin.sim: no visible global function definition for ‘pnorm’
ChenQin.test: no visible global function definition for ‘pnorm’
GCT.sim: no visible binding for global variable ‘var’
GCT.sim: no visible global function definition for ‘acf’
GCT.sim: no visible global function definition for ‘pnorm’
GCT.test: no visible binding for global variable ‘var’
GCT.test: no visible global function definition for ‘acf’
GCT.test: no visible global function definition for ‘pnorm’
GCT.test.missing: no visible binding for global variable ‘var’
GCT.test.missing: no visible global function definition for ‘acf’
GCT.test.missing: no visible global function definition for ‘pnorm’
SK.sim: no visible global function definition for ‘cov’
SK.sim: no visible global function definition for ‘pnorm’
SK.test: no visible global function definition for ‘cov’
SK.test: no visible global function definition for ‘pnorm’
build2popData : <anonymous>: no visible global function definition for
  ‘rnorm’
build2popData: no visible global function definition for ‘arima.sim’
build2popData_muYafunction : <anonymous>: no visible global function
  definition for ‘rnorm’
build2popData_muYafunction: no visible global function definition for
  ‘arima.sim’
innovate: no visible binding for global variable ‘rnorm’
rdblepareto: no visible global function definition for ‘runif’
rgammashift: no visible global function definition for ‘rgamma’
Undefined global functions or variables:
  acf arima.sim cov pnorm rgamma rnorm runif var
Consider adding
  importFrom("stats", "acf", "arima.sim", "cov", "pnorm", "rgamma",
             "rnorm", "runif", "var")
to your NAMESPACE file.
File ‘highD2pop/libs/highD2pop.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Func.ABOD: no visible global function definition for ‘combn’
Func.ABOD: no visible global function definition for ‘var’
Func.SOD: no visible global function definition for ‘var’
Func.trans : erf: no visible global function definition for ‘pnorm’
Func.trans: no visible global function definition for ‘sd’
Undefined global functions or variables:
  combn pnorm sd var
Consider adding
  importFrom("stats", "pnorm", "sd", "var")
  importFrom("utils", "combn")
to your NAMESPACE file.
installed size is  8.9Mb
  sub-directories of 1Mb or more:
    highlight   1.1Mb
    libs        7.7Mb
occupancy: no visible global function definition for ‘quantile’
Undefined global functions or variables:
  quantile
Consider adding
  importFrom("stats", "quantile")
to your NAMESPACE file.
File ‘hillmakeR/libs/hillmakeR.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
overlay.sim: no visible global function definition for ‘points’
plotDistr: no visible global function definition for ‘dev.hold’
plotDistr: no visible global function definition for ‘dev.flush’
plotDistr: no visible global function definition for ‘plot’
plotDistr: no visible global function definition for ‘segments’
Undefined global functions or variables:
  dev.flush dev.hold plot points segments
Consider adding
  importFrom("grDevices", "dev.flush", "dev.hold")
  importFrom("graphics", "plot", "points", "segments")
to your NAMESPACE file.
File ‘hint/libs/hint.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
PlotOptPower: no visible global function definition for ‘bmp’
PlotOptPower: no visible global function definition for
  ‘filled.contour’
PlotOptPower: no visible global function definition for ‘title’
PlotOptPower: no visible global function definition for ‘grey.colors’
PlotOptPower: no visible global function definition for ‘axis’
PlotOptPower: no visible global function definition for ‘polygon’
PlotOptPower: no visible global function definition for ‘legend’
PlotOptPower: no visible global function definition for ‘mtext’
PlotOptPower: no visible global function definition for ‘dev.off’
PlotOptPower: no visible global function definition for
  ‘terrain.colors’
ShowOptDesign: no visible global function definition for ‘head’
diffVariantError: no visible global function definition for ‘pbinom’
predictPoolNCP: no visible global function definition for ‘data’
probDetEqual3: no visible global function definition for ‘dbinom’
probDetEqual3: no visible global function definition for ‘pbinom’
Undefined global functions or variables:
  axis bmp data dbinom dev.off filled.contour grey.colors head legend
  mtext pbinom polygon terrain.colors title
Consider adding
  importFrom("grDevices", "bmp", "dev.off", "grey.colors",
             "terrain.colors")
  importFrom("graphics", "axis", "filled.contour", "legend", "mtext",
             "polygon", "title")
  importFrom("stats", "dbinom", "pbinom")
  importFrom("utils", "data", "head")
to your NAMESPACE file.

Found the following calls to data() loading into the global environment:
File ‘hiPOD/R/predictPoolNCP.R’:
  data(ncp.pool.pred)
See section ‘Good practice’ in ‘?data’.
arms: no visible global function definition for ‘rnorm’
rballunif: no visible global function definition for ‘rnorm’
rballunif: no visible global function definition for ‘runif’
Undefined global functions or variables:
  rnorm runif
Consider adding
  importFrom("stats", "rnorm", "runif")
to your NAMESPACE file.
File ‘HI/libs/HI.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.2Mb
  sub-directories of 1Mb or more:
    data   1.0Mb
    libs   4.3Mb
File ‘hit/libs/hit.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘hkevp/libs/hkevp.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘HKprocess/libs/HKprocess.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘HLMdiag/libs/HLMdiag.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  7.8Mb
  sub-directories of 1Mb or more:
    data   3.5Mb
    libs   4.1Mb
PlotBasic: no visible global function definition for ‘dev.new’
PlotBasic: no visible global function definition for ‘par’
PlotBasic: no visible global function definition for ‘plot’
PlotBasic: no visible global function definition for ‘grid’
PlotBasic: no visible global function definition for ‘lines’
PlotChoice : plotgraph: no visible global function definition for ‘par’
PlotChoice : plotgraph: no visible global function definition for
  ‘plot’
PlotChoice : plotgraph: no visible global function definition for
  ‘grid’
PlotChoice : plotgraph: no visible global function definition for
  ‘points’
PlotChoice : plotgraph: no visible global function definition for
  ‘lines’
PlotChoice : plotgraph: no visible global function definition for
  ‘axis’
PlotChoice : plotgraph: no visible global function definition for
  ‘mtext’
Undefined global functions or variables:
  axis dev.new grid lines mtext par plot points
Consider adding
  importFrom("grDevices", "dev.new")
  importFrom("graphics", "axis", "grid", "lines", "mtext", "par", "plot",
             "points")
to your NAMESPACE file.
Namespaces in Imports field not imported from:
  ‘MASS’ ‘Rdpack’
  All declared Imports should be used.
File ‘HotDeckImputation/libs/HotDeckImputation.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
hpbayes.plot: no visible global function definition for ‘par’
hpbayes.plot: no visible global function definition for ‘plot’
hpbayes.plot: no visible global function definition for ‘points’
postpri.plot: no visible global function definition for ‘par’
postpri.plot: no visible global function definition for ‘plot’
postpri.plot: no visible global function definition for ‘points’
postpri.plot: no visible global function definition for ‘segments’
postpri.plot: no visible global function definition for ‘boxplot’
Undefined global functions or variables:
  boxplot par plot points segments
Consider adding
  importFrom("graphics", "boxplot", "par", "plot", "points", "segments")
to your NAMESPACE file.
ApproxC: no visible global function definition for ‘convolve’
DMC: no visible global function definition for ‘median’
DMC: no visible global function definition for ‘ecdf’
ToSWF: no visible global function definition for ‘write.table’
Undefined global functions or variables:
  convolve ecdf median write.table
Consider adding
  importFrom("stats", "convolve", "ecdf", "median")
  importFrom("utils", "write.table")
to your NAMESPACE file.
Found the following significant warnings:
  sar.cpp:210:32: warning: explicitly assigning value of variable of type 'arma::sp_mat' (aka 'SpMat<double>') to itself [-Wself-assign-overloaded]
See ‘/data/gannet/ripley/R/packages/tests-clang/HSAR.Rcheck/00install.out’ for details.
installed size is  9.5Mb
  sub-directories of 1Mb or more:
    libs   9.0Mb
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    doc   3.7Mb
installed size is  6.0Mb
  sub-directories of 1Mb or more:
    R     1.8Mb
    doc   2.5Mb
File ‘hSDM/libs/hSDM.so’:
  Found ‘rand’, possibly from ‘rand’ (C)
    Object: ‘useful.o’
  Found ‘srand’, possibly from ‘srand’ (C)
    Objects: ‘hSDM.Nmixture.o’, ‘hSDM.Nmixture.iCAR.o’, ‘hSDM.ZIB.o’,
      ‘hSDM.ZIB.iCAR.alteration.o’, ‘hSDM.ZIB.iCAR.o’, ‘hSDM.ZIP.o’,
      ‘hSDM.ZIP.iCAR.alteration.o’, ‘hSDM.ZIP.iCAR.o’,
      ‘hSDM.binomial.o’, ‘hSDM.binomial.iCAR.o’, ‘hSDM.poisson.o’,
      ‘hSDM.poisson.iCAR.o’, ‘hSDM.siteocc.o’, ‘hSDM.siteocc.iCAR.o’
File ‘hSDM/libs/hSDM.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.
It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
get.d: no visible global function definition for ‘dgeom’
get.d: no visible global function definition for ‘dnbinom’
get.d: no visible global function definition for ‘dpois’
get.pdf: no visible global function definition for ‘dnorm’
get.pdf: no visible global function definition for ‘dpois’
get.pdf: no visible global function definition for ‘dmvnorm’
hsmm: no visible global function definition for ‘uniroot’
hsmm.sim: no visible global function definition for ‘rbinom’
hsmm.sim: no visible global function definition for ‘rnorm’
hsmm.sim: no visible global function definition for ‘rpois’
hsmm.sim: no visible global function definition for ‘rmvnorm’
loggeom.update: no visible global function definition for ‘plogis’
rmt: no visible global function definition for ‘rt’
rmt: no visible global function definition for ‘rnorm’
rmt: no visible global function definition for ‘rchisq’
rvm: no visible global function definition for ‘runif’
Undefined global functions or variables:
  dgeom dmvnorm dnbinom dnorm dpois plogis rbinom rchisq rmvnorm rnorm
  rpois rt runif uniroot
Consider adding
  importFrom("stats", "dgeom", "dnbinom", "dnorm", "dpois", "plogis",
             "rbinom", "rchisq", "rnorm", "rpois", "rt", "runif",
             "uniroot")
to your NAMESPACE file.
File ‘hsmm/libs/hsmm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘hsphase/libs/hsphase.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Huber: no visible global function definition for ‘quantile’
SSVD.iter.thresh: no visible global function definition for ‘mad’
error.est.full: no visible global function definition for ‘mad’
error.est.full : <anonymous>: no visible global function definition for
  ‘median’
low_rank: no visible global function definition for ‘median’
low_rank: no visible global function definition for ‘mad’
low_rank: no visible global function definition for ‘sd’
select.indices: no visible global function definition for ‘mad’
select.indices: no visible global function definition for ‘median’
select.indices: no visible global function definition for ‘pnorm’
select.indices: no visible global function definition for ‘p.adjust’
Undefined global functions or variables:
  mad median p.adjust pnorm quantile sd
Consider adding
  importFrom("stats", "mad", "median", "p.adjust", "pnorm", "quantile",
             "sd")
to your NAMESPACE file.
File ‘htdp/libs/htdp.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following significant warnings:
  language.c:41:5: warning: flexible array initialization is a GNU extension [-Wgnu-flexible-array-initializer]
See ‘/data/gannet/ripley/R/packages/tests-clang/htmltidy.Rcheck/00install.out’ for details.
installed size is 14.7Mb
  sub-directories of 1Mb or more:
    data  12.8Mb
    doc    1.3Mb
File ‘huge/libs/huge.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Package in Depends field not imported from: ‘testthat’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
File ‘humaniformat/libs/humaniformat.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  7.6Mb
  sub-directories of 1Mb or more:
    libs   7.5Mb
Calculate3D: no visible global function definition for ‘persp’
CalculateHUM_Ex: no visible global function definition for ‘combn’
CalculateHUM_Plot: no visible global function definition for ‘plot’
CalculateHUM_Plot: no visible global function definition for ‘polygon’
CalculateHUM_Plot: no visible global function definition for ‘text’
CalculateHUM_Plot: no visible global function definition for ‘points’
CalculateHUM_Plot: no visible global function definition for ‘lines’
Undefined global functions or variables:
  combn lines persp plot points polygon text
Consider adding
  importFrom("graphics", "lines", "persp", "plot", "points", "polygon",
             "text")
  importFrom("utils", "combn")
to your NAMESPACE file.
File ‘HUM/libs/HUM.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  7.6Mb
  sub-directories of 1Mb or more:
    dict   1.5Mb
    libs   5.0Mb
HWEImportSamp: no visible global function definition for ‘dnorm’
HWEImportSamp: no visible global function definition for ‘rnorm’
HWEmodelsMLE: no visible global function definition for ‘optim’
HWEsimdat: no visible global function definition for ‘rmultinom’
LambdaOptim: no visible global function definition for ‘rnorm’
LambdaOptim : LambdaPriorChoice: no visible global function definition
  for ‘quantile’
LambdaOptim: no visible global function definition for ‘optim’
SinglefPrior: no visible global function definition for ‘rnorm’
SinglefReject: no visible global function definition for ‘runif’
TriangNormHWE: no visible global function definition for ‘pbeta’
Undefined global functions or variables:
  dnorm optim pbeta quantile rmultinom rnorm runif
Consider adding
  importFrom("stats", "dnorm", "optim", "pbeta", "quantile", "rmultinom",
             "rnorm", "runif")
to your NAMESPACE file.
File ‘HWxtest/libs/HWxtest.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
hybridMC: no visible global function definition for ‘txtProgressBar’
hybridMC : pbFun: no visible global function definition for
  ‘setTxtProgressBar’
hybridMC: no visible global function definition for ‘mcmc’
Undefined global functions or variables:
  mcmc setTxtProgressBar txtProgressBar
Consider adding
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.
Rd file 'hybridMC.Rd':
  \usage lines wider than 90 characters:
     hybridMC(y.start, n.samp=1, logDens, dLogDens, epsilon, LFsteps, compWeights=NULL, MPwidth=1, MPweights=NULL, progress=0 ,...)

These lines will be truncated in the PDF manual.
File ‘HybridMC/libs/HybridMC.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
ARPIEM2012.Lmom.sample: no visible global function definition for ‘var’
ARPIEM2012.freq: no visible binding for global variable ‘quantile’
ARPIEM2012.sim.Lmoments : ARPIEM2012.sim.Qind_camp: no visible global
  function definition for ‘rnorm’
ARPIEM2012.sim.Lmoments : ARPIEM2012.sim.Qind_reg_moltiplicativo: no
  visible global function definition for ‘rnorm’
ARPIEM2012.sim.Lmoments : ARPIEM2012.sim.LCV_camp.LCA_camp: no visible
  global function definition for ‘rnorm’
ARPIEM2012.sim.Lmoments : ARPIEM2012.sim.LCV_camp.LCA_reg_additivo: no
  visible global function definition for ‘rnorm’
ARPIEM2012.sim.Lmoments :
  ARPIEM2012.sim.LCV_reg_moltiplicativo.LCA_reg_additivo: no visible
  global function definition for ‘rnorm’
Undefined global functions or variables:
  quantile rnorm var
Consider adding
  importFrom("stats", "quantile", "rnorm", "var")
to your NAMESPACE file.
Packages in Depends field not imported from:
  ‘minpack.lm’ ‘nlme’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Dstart: no visible global function definition for ‘coef’
Dstart: no visible global function definition for ‘lm’
SSkosugi: no visible global function definition for ‘pnorm’
SSkosugi: no visible global function definition for ‘dnorm’
Undefined global functions or variables:
  coef dnorm lm pnorm
Consider adding
  importFrom("stats", "coef", "dnorm", "lm", "pnorm")
to your NAMESPACE file.
Rd file 'Brook.Rd':
  \examples lines wider than 100 characters:
     brook.ns=nlsLM(y~Brook(x,thr,ths,alp,nscal),data=pf, control=nls.lm.control(maxiter=200),start=c(thr=Dstart(pf)[1],ths=Dstart(pf)[2], a ... [TRUNCATED]

Rd file 'Expo.Rd':
  \examples lines wider than 100 characters:
     expo.ns=nlsLM(y~Expo(x,thr,ths,alp),data=pf, control=nls.lm.control(maxiter=200),start=c(thr=Dstart(pf)[1],ths=Dstart(pf)[2], alp=Dstar ... [TRUNCATED]

Rd file 'Ruso.Rd':
  \examples lines wider than 100 characters:
     ruso.ns=nlsLM(y~Ruso(x,thr,ths,alp,nscal),data=pf, control=nls.lm.control(maxiter=200),start=c(thr=Dstart(pf)[1],ths=Dstart(pf)[2], alp ... [TRUNCATED]

Rd file 'SSfredlund.Rd':
  \examples lines wider than 100 characters:
     fredlund.ns=nlsLM(y~SSfredlund(x,thr,ths,alp,nscal,mscal),data=pf,control=nls.lm.control(maxiter=200,options(warn=-1)))

Rd file 'SSkosugi.Rd':
  \examples lines wider than 100 characters:
     kosugi.ns=nlsLM(y~SSkosugi(x,thr,ths,alp,nscal),data=subset(isric, Sample=="Benin2"),control=nls.lm.control(maxiter=200,options(warn=-1 ... [TRUNCATED]

Rd file 'SSvgm.Rd':
  \examples lines wider than 100 characters:
     vn.ns=nlsLM(y~SSvgm(x,thr,ths,alp,nscal,mscal),data=subset(isric, Sample=="Benin2"),control=nls.lm.control(maxiter=200,options(warn=-1) ... [TRUNCATED]

Rd file 'Tani.Rd':
  \examples lines wider than 100 characters:
     tani.ns=nlsLM(y~Tani(x,thr,ths,alp),data=pf, control=nls.lm.control(maxiter=200),start=c(thr=Dstart(pf)[1],ths=Dstart(pf)[2], alp=Dstar ... [TRUNCATED]

These lines will be truncated in the PDF manual.
hyper.plot2d: warning in magmap(sigmas, lo = sigscale[1], hi =
  sigscale[2], flip = TRUE, type = "num"): partial argument match of
  'lo' to 'locut'
hyper.plot2d: warning in magmap(sigmas, lo = sigscale[1], hi =
  sigscale[2], flip = TRUE, type = "num"): partial argument match of
  'hi' to 'hicut'
hyper.plot2d: warning in magmap(seq(sigscale[1], sigscale[2], len =
  100), lo = sigscale[1], hi = sigscale[2], flip = TRUE, type = "num"):
  partial argument match of 'lo' to 'locut'
hyper.plot2d: warning in magmap(seq(sigscale[1], sigscale[2], len =
  100), lo = sigscale[1], hi = sigscale[2], flip = TRUE, type = "num"):
  partial argument match of 'hi' to 'hicut'
hyper.plot3d: warning in magmap(sigmas, lo = sigscale[1], hi =
  sigscale[2], flip = TRUE, type = "num"): partial argument match of
  'lo' to 'locut'
hyper.plot3d: warning in magmap(sigmas, lo = sigscale[1], hi =
  sigscale[2], flip = TRUE, type = "num"): partial argument match of
  'hi' to 'hicut'
src/Makevars: SHLIB_OPENMP_CFLAGS is included in PKG_CFLAGS but not in PKG_LIBS
Use of these macros is discussed in sect 1.2.1.1 of ‘Writing R
Extensions’. The macros for different languages may differ so the
matching macro must be used in PKG_CXXFLAGS (etc) and match that used
in PKG_LIBS (except for Fortran: see the manual).
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    doc   3.8Mb
File ‘hyphenatr/libs/hyphenatr.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Packages in Depends field not imported from:
  ‘R.utils’ ‘ape’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
requiprobable: no visible global function definition for ‘extract’
requiprobable : make.tree: no visible global function definition for
  ‘extract’
requiprobable : make.tree: no visible global function definition for
  ‘runif’
rgenetree: no visible global function definition for ‘dbinom’
rgenetree: no visible global function definition for ‘dnbinom’
rgenetree: no visible global function definition for ‘runif’
rgenetree: no visible global function definition for ‘rbinom’
rgenetree: no visible global function definition for ‘rnbinom’
Undefined global functions or variables:
  dbinom dnbinom extract rbinom rnbinom runif
Consider adding
  importFrom("stats", "dbinom", "dnbinom", "rbinom", "rnbinom", "runif")
to your NAMESPACE file.
Rd file 'requiprobable.Rd':
  \examples lines wider than 100 characters:
     for (i in 1:10) unlabeled[[i]]$tip.label<-sample(c("A1","A2","B1","B2","B3","C1","C2","C3","C4","C5"))

Rd file 'rgenetree.Rd':
  \examples lines wider than 100 characters:
     ##Now lets start with 3 genes, set the number of genes at each tip of spec and vary mu between the branches of spec 

These lines will be truncated in the PDF manual.
Packages in Depends field not imported from:
  ‘MCMCpack’ ‘coda’ ‘foreach’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Namespaces in Imports field not imported from:
  ‘Rcpp’ ‘ggplot2’ ‘pander’
  All declared Imports should be used.
installed size is  8.7Mb
  sub-directories of 1Mb or more:
    data   3.0Mb
    libs   5.5Mb
File ‘iBATCGH/libs/iBATCGH.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
create.ibd.dat: no visible global function definition for ‘read.table’
create.pairs.frame: no visible global function definition for ‘terms’
ibd.moments: no visible global function definition for ‘var’
ibdreg: no visible global function definition for ‘terms’
ibdreg: no visible global function definition for ‘as.formula’
linkage.tests: no visible global function definition for ‘pchisq’
pchibar: no visible global function definition for ‘pchisq’
plot.linkage.all: no visible global function definition for ‘plot’
plot.linkage.all: no visible global function definition for ‘title’
plotpval: no visible global function definition for ‘plot’
plotpval: no visible global function definition for ‘lines’
sim.ibd.var: no visible global function definition for ‘read.table’
sim.mark.prop: no visible global function definition for ‘runif’
Undefined global functions or variables:
  as.formula lines pchisq plot read.table runif terms title var
Consider adding
  importFrom("graphics", "lines", "plot", "title")
  importFrom("stats", "as.formula", "pchisq", "runif", "terms", "var")
  importFrom("utils", "read.table")
to your NAMESPACE file.
File ‘ibdreg/libs/ibdreg.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following significant warnings:
  IBDsim.c:27:10: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
  IBDsim.c:39:20: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
  IBDsim.c:54:10: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
  IBDsim.c:61:10: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign]
See ‘/data/gannet/ripley/R/packages/tests-clang/IBDsim.Rcheck/00install.out’ for details.
CreateVoronoi: no visible global function definition for ‘slot’
CreateVoronoi : <anonymous>: no visible global function definition for
  ‘slot’
CreateVoronoi: no visible global function definition for ‘chull’
ExtractIMFi2D: no visible global function definition for ‘par’
LocatedAtBoundary: no visible global function definition for
  ‘txtProgressBar’
LocatedAtBoundary: no visible global function definition for
  ‘setTxtProgressBar’
PlotFit: no visible global function definition for ‘par’
iBEEMD: no visible global function definition for ‘is’
iBEEMD: no visible global function definition for ‘sd’
iBEEMD: no visible global function definition for ‘txtProgressBar’
iBEEMD: no visible global function definition for ‘rnorm’
iBEEMD: no visible global function definition for ‘setTxtProgressBar’
iBEEMD: no visible global function definition for ‘terrain.colors’
rbfcreate: no visible global function definition for ‘is’
rbfcreate : rbfAssemble: no visible global function definition for
  ‘dist’
rbfinterp: no visible global function definition for ‘is’
rbfinterp: no visible global function definition for ‘dist’
Undefined global functions or variables:
  chull dist is par rnorm sd setTxtProgressBar slot terrain.colors
  txtProgressBar
Consider adding
  importFrom("grDevices", "chull", "terrain.colors")
  importFrom("graphics", "par")
  importFrom("methods", "is", "slot")
  importFrom("stats", "dist", "rnorm", "sd")
  importFrom("utils", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
File ‘ibmcraftr/libs/ibmcraftr.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘ibm/libs/ibm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Iboot: no visible global function definition for ‘quantile’
Undefined global functions or variables:
  quantile
Consider adding
  importFrom("stats", "quantile")
to your NAMESPACE file.
File ‘Iboot/libs/Iboot.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
..placeOrder: no visible global function definition for ‘str’
.reqMktData.vignette: no visible global function definition for
  ‘flush.console’
e_portfolio_value: no visible global function definition for ‘str’
print.eventPortfolioValue: no visible global function definition for
  ‘str’
print.twsContract: no visible global function definition for ‘str’
print.twsContractDetails: no visible global function definition for
  ‘str’
print.twsOrder: no visible global function definition for ‘str’
print.twsOrderState: no visible global function definition for ‘str’
print.twsScannerSubscription: no visible global function definition for
  ‘str’
reqAccountUpdates: no visible binding for global variable ‘timestamp’
reqContractDetails: no visible binding for global variable ‘timestamp’
reqHistoricalData: no visible global function definition for
  ‘flush.console’
reqHistoricalData: no visible global function definition for
  ‘write.table’
Undefined global functions or variables:
  flush.console str timestamp write.table
Consider adding
  importFrom("utils", "flush.console", "str", "timestamp", "write.table")
to your NAMESPACE file.
Registration problems:
  symbol ‘nom1’ in the local frame:
   .C(nom1, as.double(xord), as.integer(length(xord)), as.double(yord), 
       as.double(gridbw), as.integer(length(gridbw)), as.integer(effold), 
       as.integer(neffold), double(length(gridbw)), double(length(gridbw)))
  symbol ‘nom2’ in the local frame:
   .C(nom2, as.double(x), as.integer(n), as.double(y), as.double(bandwidth), 
       as.double(x), as.integer(n), double(n), double(1))
  symbol ‘nom2’ in the local frame:
   .C(nom2, as.double(x), as.integer(n), as.double(y), as.double(bandwidth), 
       as.double(x), as.integer(n), double(n), double(1), double(n))
  symbol ‘nom’ in the local frame:
   .C(nom, as.double(x), as.integer(length(x)), as.double(y), as.double(object$bandwidth), 
       as.double(newdata), as.integer(length(newdata)), double(length(newdata)), 
       double(1))
  symbol ‘nom’ in the local frame:
   .C(nom, as.double(x), as.integer(length(x)), as.double(y), as.double(object$bandwidth), 
       as.double(newdata), as.integer(length(newdata)), double(length(newdata)), 
       double(1), double(length(newdata)))
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
File ‘iBST/libs/iBST.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  6.1Mb
  sub-directories of 1Mb or more:
    data   6.1Mb
installed size is  7.3Mb
  sub-directories of 1Mb or more:
    libs   6.6Mb
File ‘icapca/libs/icapca.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 30.5Mb
  sub-directories of 1Mb or more:
    R     14.5Mb
    doc    4.8Mb
    libs  10.3Mb
installed size is 16.2Mb
  sub-directories of 1Mb or more:
    libs  14.9Mb
File ‘icensmis/libs/icensmis.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'library' or 'require' call to ‘KernSmooth’ which was already attached by Depends.
  Please remove these calls from your code.
bickde: no visible global function definition for ‘optimize’
iclocpoly: no visible global function definition for ‘approx’
iclocpoly: no visible global function definition for ‘sd’
iclocpoly: no visible global function definition for ‘dnorm’
iclocpoly: no visible global function definition for ‘pnorm’
iclocpoly: no visible global function definition for ‘var’
inmost: no visible global function definition for ‘stack’
Undefined global functions or variables:
  approx dnorm optimize pnorm sd stack var
Consider adding
  importFrom("stats", "approx", "dnorm", "optimize", "pnorm", "sd",
             "var")
  importFrom("utils", "stack")
to your NAMESPACE file.
Rd file 'ickde.Rd':
  \usage lines wider than 90 characters:
     ickde(I, h, f, m, n.iterations = 10, x1, xm, right.limit = 10000,kernel="gaussian", old=TRUE)

These lines will be truncated in the PDF manual.
File ‘ICE/libs/ICE.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
INCAncinner : dian: no visible global function definition for ‘cutree’
INCAncinner : bestela: no visible global function definition for
  ‘cutree’
center: no visible global function definition for ‘var’
dbhatta: no visible global function definition for ‘as.dist’
dcor: no visible global function definition for ‘cor’
dcor: no visible global function definition for ‘as.dist’
dgower: no visible global function definition for ‘as.dist’
dmahal: no visible global function definition for ‘as.dist’
dproc2: no visible global function definition for ‘as.dist’
plot.incaix: no visible global function definition for ‘barplot’
plot.incanc: no visible global function definition for ‘plot’
plot.incanc: no visible global function definition for ‘lines’
plot.incanc: no visible global function definition for ‘legend’
selectioncluster : dian: no visible global function definition for
  ‘cutree’
selectioncluster : bestela: no visible global function definition for
  ‘cutree’
Undefined global functions or variables:
  as.dist barplot cor cutree legend lines plot var
Consider adding
  importFrom("graphics", "barplot", "legend", "lines", "plot")
  importFrom("stats", "as.dist", "cor", "cutree", "var")
to your NAMESPACE file.
Packages in Depends field not imported from:
  ‘caTools’ ‘gdata’ ‘gplots’ ‘gtools’ ‘lattice’ ‘parallel’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Found the following significant warnings:
  RccpSource_.cpp:978:54: warning: explicitly assigning value of variable of type 'Rcpp::NumericVector' (aka 'Vector<14>') to itself [-Wself-assign-overloaded]
See ‘/data/gannet/ripley/R/packages/tests-clang/icosa.Rcheck/00install.out’ for details.
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    doc       1.9Mb
    extdata   1.4Mb
    libs      2.3Mb
PH.ICsurv.EM: no visible global function definition for ‘quantile’
PH.ICsurv.EM: no visible global function definition for ‘optim’
fast.PH.ICsurv.EM: no visible global function definition for ‘quantile’
fast.PH.ICsurv.EM: no visible global function definition for ‘optim’
Undefined global functions or variables:
  optim quantile
Consider adding
  importFrom("stats", "optim", "quantile")
to your NAMESPACE file.
installed size is 52.3Mb
  sub-directories of 1Mb or more:
    libs  50.8Mb
Namespaces in Imports field not imported from:
  ‘MASS’ ‘gtools’ ‘maxLik’
  All declared Imports should be used.
installed size is 28.0Mb
  sub-directories of 1Mb or more:
    doc    1.0Mb
    libs  26.5Mb
File ‘identity/libs/identity.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Packages in Depends field not imported from:
  ‘XML’ ‘vegan’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
File ‘ieeeround/libs/ieeeround.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
ROC_plot: no visible global function definition for ‘pdf’
ROC_plot: no visible global function definition for ‘par’
ROC_plot: no visible global function definition for ‘dev.off’
Ymean_compare: no visible binding for global variable ‘sd’
Ymean_compare: no visible global function definition for ‘pdf’
Ymean_compare: no visible global function definition for ‘par’
Ymean_compare: no visible global function definition for ‘dev.off’
data_simulation: no visible global function definition for ‘rnorm’
gibbs_sampling: no visible global function definition for ‘rnorm’
mcmc_trace_plot: no visible global function definition for ‘pdf’
mcmc_trace_plot: no visible global function definition for ‘dev.off’
Undefined global functions or variables:
  dev.off par pdf rnorm sd
Consider adding
  importFrom("grDevices", "dev.off", "pdf")
  importFrom("graphics", "par")
  importFrom("stats", "rnorm", "sd")
to your NAMESPACE file.
NB: .First.lib is obsolete and will not be used in R >= 3.0.0

ifa.em: no visible global function definition for ‘runif’
ifa.init.pca: no visible global function definition for ‘var’
ifa.init.pca: no visible global function definition for ‘cor’
ifa.init.pca: no visible global function definition for ‘runif’
ifa.init.random: no visible global function definition for ‘runif’
ifa.init.random: no visible global function definition for ‘var’
Undefined global functions or variables:
  cor runif var
Consider adding
  importFrom("stats", "cor", "runif", "var")
to your NAMESPACE file.
File ‘ifa/libs/ifa.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘ifctools/libs/ifctools.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘IFP/libs/IFP.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘ifs/libs/ifs.so’:
  Found no call to: ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following assignments to the global environment:
File ‘IgorR/R/ReadIgorBinary.R’:
  assign(WaveName, rval, envir = .GlobalEnv)
installed size is 16.6Mb
  sub-directories of 1Mb or more:
    R      1.4Mb
    help   1.1Mb
    libs  13.7Mb
File ‘IHSEP/libs/IHSEP.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
ihs.mle: no visible global function definition for ‘as.formula’
pihs: no visible global function definition for ‘pnorm’
qihs: no visible global function definition for ‘qnorm’
rihs: no visible global function definition for ‘rnorm’
Undefined global functions or variables:
  as.formula pnorm qnorm rnorm
Consider adding
  importFrom("stats", "as.formula", "pnorm", "qnorm", "rnorm")
to your NAMESPACE file.
installed size is 39.4Mb
  sub-directories of 1Mb or more:
    data      1.4Mb
    doc       1.1Mb
    extdata   1.0Mb
    include   2.8Mb
    libs     32.4Mb
src/Makevars.win: SHLIB_OPENMP_CFLAGS is included in PKG_LIBS but linking is by C++
  src/Makevars.win: it is not portable to include SHLIB_OPENMP_*' macros in PKG_CPPFLAGS
Use of these macros is discussed in sect 1.2.1.1 of ‘Writing R
Extensions’. The macros for different languages may differ so the
matching macro must be used in PKG_CXXFLAGS (etc) and match that used
in PKG_LIBS (except for Fortran: see the manual).
PKG_CPPFLAGS is used for both C and C++ code so it is not portable to
use it for these macros.
installed size is 10.9Mb
  sub-directories of 1Mb or more:
    R  10.8Mb
IMIS: no visible global function definition for ‘sample.prior’
IMIS: no visible global function definition for ‘var’
IMIS: no visible global function definition for ‘cov’
IMIS: no visible global function definition for ‘prior’
IMIS: no visible global function definition for ‘likelihood’
IMIS : posterior: no visible global function definition for ‘prior’
IMIS : posterior: no visible global function definition for
  ‘likelihood’
IMIS: no visible global function definition for ‘optim’
IMIS: no visible global function definition for ‘rnorm’
IMIS: no visible global function definition for ‘mahalanobis’
IMIS: no visible global function definition for ‘cov.wt’
IMIS: no visible global function definition for ‘dnorm’
Undefined global functions or variables:
  cov cov.wt dnorm likelihood mahalanobis optim prior rnorm
  sample.prior var
Consider adding
  importFrom("stats", "cov", "cov.wt", "dnorm", "mahalanobis", "optim",
             "rnorm", "var")
to your NAMESPACE file.
prepare_Rd: IMIS.Rd:26: Dropping empty section \keyword
installed size is  5.3Mb
  sub-directories of 1Mb or more:
    libs   4.5Mb
Found the following significant warnings:
  IM4ECpp.cpp:24:54: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  IM4ECpp.cpp:24:65: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  IM4ECpp.cpp:33:54: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  IM4ECpp.cpp:33:65: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  ImmigrateCpp.cpp:25:62: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  ImmigrateCpp.cpp:25:73: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  ImmigrateCpp.cpp:35:62: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  ImmigrateCpp.cpp:35:73: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  imIM4ECpp.cpp:24:59: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  imIM4ECpp.cpp:24:67: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  imIM4ECpp.cpp:24:78: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  imIM4ECpp.cpp:33:59: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  imIM4ECpp.cpp:33:67: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
  imIM4ECpp.cpp:33:78: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
See ‘/data/gannet/ripley/R/packages/tests-clang/Immigrate.Rcheck/00install.out’ for details.
heter_IV2: no visible global function definition for ‘poly’
heter_IV2: no visible global function definition for ‘lm’
heter_IV2: no visible global function definition for ‘step’
heter_IV2: no visible global function definition for ‘pnorm’
heter_IV2: no visible global function definition for ‘qnorm’
homo_IV1: no visible global function definition for ‘coef’
homo_IV1: no visible global function definition for ‘pnorm’
homo_IV1: no visible global function definition for ‘qnorm’
Undefined global functions or variables:
  coef lm pnorm poly qnorm step
Consider adding
  importFrom("stats", "coef", "lm", "pnorm", "poly", "qnorm", "step")
to your NAMESPACE file.
prepare_Rd: heter_IV2.Rd:82-84: Dropping empty section \note
prepare_Rd: heter_IV2.Rd:88-90: Dropping empty section \seealso
prepare_Rd: homo_IV1.Rd:65-67: Dropping empty section \note
prepare_Rd: homo_IV1.Rd:71-73: Dropping empty section \seealso
prepare_Rd: impact.Rd:31-33: Dropping empty section \source
'library' or 'require' calls to packages already attached by Depends:
  ‘inline’ ‘lpSolve’
  Please remove these calls from your code.
Packages in Depends field not imported from:
  ‘inline’ ‘lpSolve’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
FctReducedNodevalues: no visible global function definition for
  ‘signature’
FctReducedNodevalues: no visible global function definition for
  ‘cfunction’
TotalVar: no visible global function definition for ‘lp’
Undefined global functions or variables:
  cfunction lp signature
Consider adding
  importFrom("methods", "signature")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
generate.ExpressionData: no visible global function definition for
  ‘rnorm’
impute.MinDet: no visible binding for global variable ‘quantile’
impute.MinProb: no visible binding for global variable ‘quantile’
impute.MinProb: no visible binding for global variable ‘sd’
impute.MinProb: no visible global function definition for ‘median’
impute.MinProb: no visible global function definition for ‘rnorm’
impute.QRILC: no visible global function definition for ‘qnorm’
impute.QRILC: no visible global function definition for ‘quantile’
impute.QRILC: no visible global function definition for ‘lm’
insertMVs: no visible global function definition for ‘rnorm’
model.Selector: no visible global function definition for ‘qnorm’
model.Selector: no visible global function definition for ‘quantile’
model.Selector: no visible global function definition for ‘lm’
model.Selector: no visible global function definition for ‘ecdf’
model.Selector: no visible global function definition for ‘pnorm’
pep2prot: no visible binding for global variable ‘median’
Undefined global functions or variables:
  ecdf lm median pnorm qnorm quantile rnorm sd
Consider adding
  importFrom("stats", "ecdf", "lm", "median", "pnorm", "qnorm",
             "quantile", "rnorm", "sd")
to your NAMESPACE file.
impute.mdr: no visible global function definition for ‘combn’
Undefined global functions or variables:
  combn
Consider adding
  importFrom("utils", "combn")
to your NAMESPACE file.
Rd file 'impute.mdr.Rd':
  \usage lines wider than 90 characters:
     impute.mdr(dataset, colresp, cs, combi, cv.fold = 10, na.method = 0, max_iter = 30, randomize = FALSE)

These lines will be truncated in the PDF manual.
File ‘imputeMDR/libs/imputeMDR.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘DBI’
  All declared Imports should be used.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘count_compare’
File ‘imputeMulti/libs/imputeMulti.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
heal_data: no visible global function definition for ‘optimum_k’
heal_data: no visible global function definition for ‘optimum_w’
heal_data: no visible global function definition for ‘pred_for_w’
Undefined global functions or variables:
  optimum_k optimum_w pred_for_w
Warning: no function found corresponding to methods exports from ‘IM’ for: ‘initialize’

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
Packages in Depends field not imported from:
  ‘bmp’ ‘jpeg’ ‘methods’ ‘png’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Rd file 'MultiIm-class.Rd':
  \examples lines wider than 100 characters:
     #create MultiIm object, calculate generalized Pseudo-Zernike moments, invariants, and reconstruction for all images
             #create MultiIm object, calculate discrete Chebyshev moments, invariants, and reconstruction for all images
             #create MultiIm object, calculate continuous Chebyshev - Legendre moments, invariants, and reconstruction for all images

Rd file 'demoPoly.Rd':
  \examples lines wider than 100 characters:
             #display generalized Pseudo-Zernike polynomials of order and repetition (3,2), (4,2), (5,3), (6,3) 

Rd file 'momentObj.Rd':
  \examples lines wider than 100 characters:
             #calculate bivariate Legendre/Gegenbauer moments up to orders 50 and 100 with parameter 1 for Gegenbauer moments.
             #compute Radial Harmonic-Fourier moment invariants of a list of images, using up to order 10 and repetition 10

These lines will be truncated in the PDF manual.
File ‘IM/libs/IM.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘lme4’ ‘reshape2’
  All declared Imports should be used.
GenerateMixData: no visible global function definition for ‘rnbinom’
GenerateMixData: no visible global function definition for ‘rbeta’
GenerateMixData: no visible global function definition for ‘rbinom’
GenerateMixData: no visible global function definition for ‘rpois’
InitializePars: no visible global function definition for ‘aggregate’
InitializePars: no visible global function definition for ‘rnorm’
MultiStart: no visible global function definition for ‘rnorm’
MultiStart: no visible global function definition for ‘runif’
inarmix: no visible global function definition for ‘terms’
inarmix: no visible global function definition for ‘model.frame’
inarmix: no visible global function definition for ‘model.response’
inarmix: no visible global function definition for ‘model.matrix’
print.diagnose.inarmix: no visible global function definition for
  ‘plot’
print.diagnose.inarmix: no visible global function definition for
  ‘lines’
print.summary.inarmix: no visible global function definition for
  ‘printCoefmat’
summary.inarmix: no visible global function definition for ‘pnorm’
Undefined global functions or variables:
  aggregate lines model.frame model.matrix model.response plot pnorm
  printCoefmat rbeta rbinom rnbinom rnorm rpois runif terms
Consider adding
  importFrom("graphics", "lines", "plot")
  importFrom("stats", "aggregate", "model.frame", "model.matrix",
             "model.response", "pnorm", "printCoefmat", "rbeta",
             "rbinom", "rnbinom", "rnorm", "rpois", "runif", "terms")
to your NAMESPACE file.
File ‘inarmix/libs/inarmix.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘rgeos’
  All declared Imports should be used.
'library' or 'require' call to ‘xtable’ which was already attached by Depends.
  Please remove these calls from your code.
'library' or 'require' calls in package code:
  ‘Rmpi’ ‘rsprng’ ‘snow’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
A.dep.tests: no visible global function definition for ‘combn’
A.dep.tests: no visible global function definition for ‘pchisq’
dependogram: no visible global function definition for ‘makeCluster’
dependogram: no visible global function definition for
  ‘clusterSetupSPRNG’
dependogram: no visible global function definition for ‘clusterCall’
dependogram: no visible global function definition for ‘stopCluster’
dependogram: no visible global function definition for ‘combn’
dependogram: no visible global function definition for ‘plot’
dependogram: no visible global function definition for ‘points’
dependogram: no visible global function definition for ‘segments’
Undefined global functions or variables:
  clusterCall clusterSetupSPRNG combn makeCluster pchisq plot points
  segments stopCluster
Consider adding
  importFrom("graphics", "plot", "points", "segments")
  importFrom("stats", "pchisq")
  importFrom("utils", "combn")
to your NAMESPACE file.
File ‘IndependenceTests/libs/IndependenceTests.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Package in Depends field not imported from: ‘sandwich’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
infer,coxph: no visible global function definition for ‘coef’
infer,coxph: no visible global function definition for ‘vcov’
infer,coxph: no visible global function definition for ‘sandwich’
infer,coxph: no visible global function definition for ‘pnorm’
infer,coxph: no visible global function definition for ‘qnorm’
infer,gee: no visible global function definition for ‘coef’
infer,gee: no visible global function definition for ‘pnorm’
infer,gee: no visible global function definition for ‘qnorm’
infer,glm: no visible global function definition for ‘coef’
infer,glm: no visible global function definition for ‘sandwich’
infer,glm: no visible global function definition for ‘vcov’
infer,glm: no visible global function definition for ‘pnorm’
infer,glm: no visible global function definition for ‘qnorm’
infer,lm: no visible global function definition for ‘coef’
infer,lm: no visible global function definition for ‘sandwich’
infer,lm: no visible global function definition for ‘vcov’
infer,lm: no visible global function definition for ‘pnorm’
infer,lm: no visible global function definition for ‘qnorm’
infer,lme: no visible global function definition for ‘coef’
infer,lme: no visible global function definition for ‘fixed.effects’
infer,lme: no visible global function definition for ‘vcov’
infer,lme: no visible global function definition for ‘pnorm’
infer,lme: no visible global function definition for ‘qnorm’
infer,mer: no visible global function definition for ‘coef’
infer,mer: no visible global function definition for ‘vcov’
infer,mer: no visible global function definition for ‘pnorm’
infer,mer: no visible global function definition for ‘qnorm’
infer,mer: no visible binding for global variable ‘fm1’
Undefined global functions or variables:
  coef fixed.effects fm1 pnorm qnorm sandwich vcov
Consider adding
  importFrom("stats", "coef", "pnorm", "qnorm", "vcov")
to your NAMESPACE file.
contrib: no visible global function definition for ‘aggregate’
est.expDeath : surv_p: no visible global function definition for
  ‘survfit’
est.expDeath : surv_p: no visible global function definition for
  ‘approx’
function1: no visible global function definition for ‘coxph.detail’
inference.SMR: no visible global function definition for ‘qnorm’
var.expDeath : surv_p: no visible global function definition for
  ‘survfit’
var.expDeath : surv_p: no visible global function definition for
  ‘approx’
Undefined global functions or variables:
  aggregate approx coxph.detail qnorm survfit
Consider adding
  importFrom("stats", "aggregate", "approx", "qnorm")
to your NAMESPACE file.
File ‘influenceR/libs/influenceR.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
gen.intercepts: no visible global function definition for ‘contr.SAS’
Undefined global functions or variables:
  contr.SAS
Consider adding
  importFrom("stats", "contr.SAS")
to your NAMESPACE file.
entropy: no visible global function definition for ‘na.omit’
interinformation: no visible global function definition for ‘na.omit’
multiinformation: no visible global function definition for ‘na.omit’
mutinformation: no visible global function definition for ‘na.omit’
Undefined global functions or variables:
  na.omit
Consider adding
  importFrom("stats", "na.omit")
to your NAMESPACE file.
File ‘infotheo/libs/infotheo.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Unexported object imported by a ':::' call: ‘ltm:::crf.GPCM’
  See the note in ?`:::` about the use of this operator.
Jeffreys: no visible global function definition for ‘integrate’
Jeffreys: no visible global function definition for ‘splinefun’
count.rows: no visible global function definition for ‘tail’
count.rows: no visible global function definition for ‘head’
cprobs : <anonymous>: no visible global function definition for
  ‘plogis’
inf.func.ltm : f: no visible global function definition for ‘plogis’
iota: no visible global function definition for ‘integrate’
iota: no visible global function definition for ‘optimize’
iota: no visible global function definition for ‘pchisq’
iota.c : rirm: no visible global function definition for ‘coef’
iota.c: no visible global function definition for ‘integrate’
iota.c: no visible global function definition for ‘sd’
iota.u: no visible global function definition for ‘integrate’
iprobs : <anonymous>: no visible global function definition for
  ‘plogis’
logL.ltm : logL: no visible global function definition for ‘dbinom’
logL.ltm : logL: no visible global function definition for ‘plogis’
logL.ltm : logL : <anonymous>: no visible global function definition
  for ‘plogis’
rJeffreys : Jpinv.min: no visible global function definition for
  ‘integrate’
rJeffreys : Jpinv: no visible global function definition for ‘nlminb’
rJeffreys : Jpinv: no visible global function definition for ‘qnorm’
rJeffreys: no visible global function definition for ‘runif’
Undefined global functions or variables:
  coef dbinom head integrate nlminb optimize pchisq plogis qnorm runif
  sd splinefun tail
Consider adding
  importFrom("stats", "coef", "dbinom", "integrate", "nlminb",
             "optimize", "pchisq", "plogis", "qnorm", "runif", "sd",
             "splinefun")
  importFrom("utils", "head", "tail")
to your NAMESPACE file.
Rd file 'Jeffreys.Rd':
  \usage lines wider than 90 characters:
     Jeffreys(ltm.obj = NULL, inf.mat = NULL, inf.func = NULL, return = "prior", spl.method = "natural", range.int = c(-Inf, Inf))

Rd file 'iota.Rd':
  \usage lines wider than 90 characters:
     iota(ltm.obj, logL.fun, fscore.obj = NULL, data = NULL, prior = NULL, theta0 = NULL, range.int = c(-Inf, Inf), range.theta = c(-10, 10) ... [TRUNCATED]

Rd file 'iota.c.Rd':
  \usage lines wider than 90 characters:
     iota.c(ltm.obj, M = NULL, prior = NULL, logL.fun = NULL, rirm = NULL, range.int = c(-Inf, Inf))

These lines will be truncated in the PDF manual.
'library' or 'require' calls to packages already attached by Depends:
  ‘compiler’ ‘deSolve’ ‘lattice’ ‘nlme’
  Please remove these calls from your code.
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
File ‘insideRODE/R/zzz.r’:
  .First.lib calls:
    require(nlme)
    require(lattice)
    require(deSolve)
    require(compiler)

Package startup functions should not change the search path.
See section ‘Good practice’ in '?.onAttach'.

cfLSODE: no visible global function definition for ‘deriv’
cfODE: no visible global function definition for ‘deriv’
cfVODE: no visible global function definition for ‘deriv’
cpLSODE: no visible global function definition for ‘deriv’
cpODE: no visible global function definition for ‘deriv’
cpVODE: no visible global function definition for ‘deriv’
nlmLSODE: no visible global function definition for ‘deriv’
nlmLSODEcp: no visible global function definition for ‘deriv’
nlmODE: no visible global function definition for ‘deriv’
nlmODEcp: no visible global function definition for ‘deriv’
nlmVODE: no visible global function definition for ‘deriv’
nlmVODEcp: no visible global function definition for ‘deriv’
Undefined global functions or variables:
  deriv
Consider adding
  importFrom("stats", "deriv")
to your NAMESPACE file.
cgrad: no visible global function definition for ‘res’
doshade: no visible global function definition for ‘projection’
doshade: no visible global function definition for ‘extent’
doshade: no visible global function definition for ‘res’
doshade: no visible global function definition for ‘raster’
doshade: no visible global function definition for ‘extent<-’
Undefined global functions or variables:
  extent extent<- projection raster res
File ‘insol/libs/insol.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘INSPIRE/libs/INSPIRE.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is 11.6Mb
  sub-directories of 1Mb or more:
    libs  11.3Mb
ClearBottomMenuPlot: no visible global function definition for ‘rect’
InteractiveIGraph : mousedown: no visible global function definition
  for ‘grconvertX’
InteractiveIGraph : mousedown: no visible global function definition
  for ‘grconvertY’
InteractiveIGraph : dragmousemove: no visible global function
  definition for ‘grconvertX’
InteractiveIGraph : dragmousemove: no visible global function
  definition for ‘grconvertY’
InteractiveIGraph : dragmousemove: no visible global function
  definition for ‘polygon’
InteractiveIGraph : mouseup: no visible global function definition for
  ‘grconvertX’
InteractiveIGraph : mouseup: no visible global function definition for
  ‘grconvertY’
InteractiveIGraph : keybd: no visible global function definition for
  ‘par’
PlotRegionGeneral: no visible global function definition for ‘polygon’
plot.InteractiveIGraph: no visible global function definition for
  ‘plot’
plot.InteractiveIGraph: no visible global function definition for ‘par’
plot.Menu: no visible global function definition for ‘par’
plot.Menu: no visible binding for global variable ‘rect’
plot.MenuItem: no visible binding for global variable ‘strwidth’
plot.MenuItem: no visible binding for global variable ‘strheight’
plot.MenuItem: no visible binding for global variable ‘rect’
plot.MenuItem: no visible binding for global variable ‘text’
plot.MenuLine: no visible binding for global variable ‘rect’
Undefined global functions or variables:
  grconvertX grconvertY par plot polygon rect strheight strwidth text
Consider adding
  importFrom("graphics", "grconvertX", "grconvertY", "par", "plot",
             "polygon", "rect", "strheight", "strwidth", "text")
to your NAMESPACE file.
Rd file 'InteractiveIGraph.Rd':
  \examples lines wider than 100 characters:
     # this is an 'InteractiveIGraph' object, up till now there is not much difference. Just some extra attributes.

Rd file 'MenuAddItems.Rd':
  \examples lines wider than 100 characters:
       Item = list(list(label=msg, RegionParams=list(XBufCof = 0, YBufCof=0.2), RecParams=list(lwd = NA, border=NA), TextParams=list(cex=0.8 ... [TRUNCATED]

These lines will be truncated in the PDF manual.
interact: no visible global function definition for ‘cor’
plot.interact: no visible global function definition for ‘plot’
standardize.matrix: no visible binding for global variable ‘var’
standardize.matrix: no visible binding for global variable ‘sd’
Undefined global functions or variables:
  cor plot sd var
Consider adding
  importFrom("graphics", "plot")
  importFrom("stats", "cor", "sd", "var")
to your NAMESPACE file.
File ‘Interact/libs/Interact.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
HH: no visible global function definition for ‘var’
HH: no visible global function definition for ‘qnorm’
exactCI: no visible global function definition for ‘quantile’
sample.n: no visible global function definition for ‘rbinom’
Undefined global functions or variables:
  qnorm quantile rbinom var
Consider adding
  importFrom("stats", "qnorm", "quantile", "rbinom", "var")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘gridExtra’
  All declared Imports should be used.
Packages in Depends field not imported from:
  ‘chron’ ‘date’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Mo.Th.Ra.: no visible global function definition for ‘aggregate’
daily_mean: no visible global function definition for ‘aggregate’
date.time: no visible global function definition for ‘chron’
date.time: no visible global function definition for ‘years’
date.time: no visible global function definition for ‘days’
date.time: no visible global function definition for ‘hours’
par_calibration: no visible global function definition for ‘date.mdy’
par_calibration: no visible global function definition for ‘as.date’
par_calibration: no visible global function definition for ‘aggregate’
plot_meas_sim: no visible global function definition for ‘as.date’
plot_meas_sim: no visible global function definition for ‘date.mdy’
plot_meas_sim: no visible global function definition for ‘plot’
plot_meas_sim: no visible global function definition for ‘par’
plot_meas_sim: no visible global function definition for ‘legend’
shape_calibration: no visible global function definition for ‘date.mdy’
shape_calibration: no visible global function definition for ‘as.date’
shape_calibration: no visible global function definition for
  ‘aggregate’
Undefined global functions or variables:
  aggregate as.date chron date.mdy days hours legend par plot years
Consider adding
  importFrom("graphics", "legend", "par", "plot")
  importFrom("stats", "aggregate")
to your NAMESPACE file.
installed size is 29.1Mb
  sub-directories of 1Mb or more:
    libs  28.8Mb
icScoreTest: no visible global function definition for ‘pnorm’
icScoreTest: no visible global function definition for ‘pchisq’
icfit.formula: no visible global function definition for ‘terms’
icfit.formula: no visible global function definition for
  ‘model.extract’
icfitBootCI: no visible global function definition for ‘binom.test’
ictest.formula: no visible global function definition for
  ‘model.extract’
plot.icfit: no visible global function definition for ‘gray’
plot.icfit: no visible global function definition for ‘plot’
plot.icfit: no visible global function definition for ‘axis’
plot.icfit : polygon.icfit: no visible global function definition for
  ‘polygon’
scoresFromFit: no visible global function definition for ‘dnorm’
scoresFromFit: no visible global function definition for ‘qnorm’
wsrHLYpclt: no visible global function definition for ‘model.matrix’
wsrHLYpclt: no visible global function definition for ‘pchisq’
wsrHLYpclt: no visible global function definition for ‘pnorm’
Undefined global functions or variables:
  axis binom.test dnorm gray model.extract model.matrix pchisq plot
  pnorm polygon qnorm terms
Consider adding
  importFrom("grDevices", "gray")
  importFrom("graphics", "axis", "plot", "polygon")
  importFrom("stats", "binom.test", "dnorm", "model.extract",
             "model.matrix", "pchisq", "pnorm", "qnorm", "terms")
to your NAMESPACE file.
File ‘intervals/libs/intervals.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'library' or 'require' call to ‘maxLik’ which was already attached by Depends.
  Please remove these calls from your code.
Package in Depends field not imported from: ‘maxLik’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
ILik : rbern: no visible global function definition for ‘runif’
ILik : q: no visible global function definition for ‘dnorm’
ILik : SlambdaG: no visible global function definition for ‘rnorm’
ILik : Pi_hat: no visible global function definition for ‘rnorm’
ILik : q: no visible global function definition for ‘dgamma’
ILik : SlambdaG: no visible global function definition for ‘rgamma’
ILik : Pi_hat: no visible global function definition for ‘rgamma’
ILik: no visible global function definition for ‘maxLik’
ILik: no visible global function definition for ‘coef’
ILik: no visible global function definition for ‘hessian’
ILik: no visible global function definition for ‘plot’
Undefined global functions or variables:
  coef dgamma dnorm hessian maxLik plot rgamma rnorm runif
Consider adding
  importFrom("graphics", "plot")
  importFrom("stats", "coef", "dgamma", "dnorm", "rgamma", "rnorm",
             "runif")
to your NAMESPACE file.
intReg: no visible binding for global variable ‘plogis’
intReg: no visible binding for global variable ‘pnorm’
intReg: no visible binding for global variable ‘pcauchy’
intReg: no visible binding for global variable ‘dlogis’
intReg: no visible binding for global variable ‘dnorm’
intReg: no visible binding for global variable ‘dcauchy’
intReg: no visible global function definition for ‘model.matrix’
intReg: no visible global function definition for ‘model.weights’
intReg: no visible global function definition for ‘model.offset’
intReg: no visible global function definition for ‘model.response’
intReg: no visible global function definition for ‘glm.fit’
intReg: no visible global function definition for ‘binomial’
intReg: no visible binding for global variable ‘coef’
intReg: no visible global function definition for ‘lm’
intReg: no visible global function definition for ‘coef’
intReg: no visible global function definition for ‘var’
model.matrix.intReg: no visible global function definition for
  ‘model.frame’
print.intReg: no visible global function definition for ‘coef’
print.summary.intReg: no visible global function definition for
  ‘logLik’
print.summary.intReg: no visible global function definition for
  ‘printCoefmat’
summary.intReg: no visible global function definition for ‘coef’
Undefined global functions or variables:
  binomial coef dcauchy dlogis dnorm glm.fit lm logLik model.frame
  model.matrix model.offset model.response model.weights pcauchy plogis
  pnorm printCoefmat var
Consider adding
  importFrom("stats", "binomial", "coef", "dcauchy", "dlogis", "dnorm",
             "glm.fit", "lm", "logLik", "model.frame", "model.matrix",
             "model.offset", "model.response", "model.weights",
             "pcauchy", "plogis", "pnorm", "printCoefmat", "var")
to your NAMESPACE file.
f.B: no visible global function definition for ‘pnorm’
f.B.neglog.deriv: no visible global function definition for ‘pnorm’
f.B.neglog.deriv: no visible global function definition for ‘dnorm’
f.grovest3 : f.est: no visible global function definition for ‘survfit’
f.grovest3 : f.est: no visible global function definition for ‘plot’
f.grovest3 : f.est: no visible global function definition for ‘lines’
f.grovest3: no visible global function definition for ‘model.frame’
f.grovest3: no visible global function definition for ‘model.extract’
invGauss: no visible global function definition for ‘model.frame’
invGauss: no visible global function definition for ‘model.extract’
invGauss: no visible global function definition for ‘model.matrix’
predict.invGauss: no visible global function definition for
  ‘model.frame’
predict.invGauss: no visible global function definition for
  ‘model.extract’
predict.invGauss: no visible global function definition for
  ‘model.matrix’
predict.invGauss: no visible binding for global variable ‘formula’
predict.invGauss: no visible binding for global variable ‘data’
summary.invGauss: no visible global function definition for ‘pnorm’
Undefined global functions or variables:
  data dnorm formula lines model.extract model.frame model.matrix plot
  pnorm survfit
Consider adding
  importFrom("graphics", "lines", "plot")
  importFrom("stats", "dnorm", "formula", "model.extract", "model.frame",
             "model.matrix", "pnorm")
  importFrom("utils", "data")
to your NAMESPACE file.
flowsRandom: no visible global function definition for ‘dmultinom’
readBed: no visible global function definition for ‘read.table’
Undefined global functions or variables:
  dmultinom read.table
Consider adding
  importFrom("stats", "dmultinom")
  importFrom("utils", "read.table")
to your NAMESPACE file.
File ‘iotools/libs/iotools.so’:
  Found non-API calls to R: ‘R_GetConnection’, ‘R_ReadConnection’,
    ‘R_WriteConnection’
File ‘iotools/libs/iotools.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

Compiled code should not call non-API entry points in R.
It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
installed size is  9.1Mb
  sub-directories of 1Mb or more:
    data      1.4Mb
    extdata   7.5Mb
Namespaces in Imports field not imported from:
  ‘Matrix’ ‘expm’
  All declared Imports should be used.
Warning: no function found corresponding to methods exports from ‘ipdmeta’ for: ‘show’

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
ipd.meta.power.base.function : power: no visible global function
  definition for ‘qnorm’
ipd.meta.power.base.function : power: no visible global function
  definition for ‘pnorm’
ipd.meta.power.base.function: no visible global function definition for
  ‘qnorm’
ipdlme.hetero: no visible global function definition for ‘new’
ipdlme.homo: no visible global function definition for ‘new’
plot_ipdlme: no visible global function definition for ‘par’
plot_ipdlme: no visible global function definition for ‘abline’
plot_ipdlme: no visible global function definition for ‘axis’
plot_ipdlme: no visible global function definition for ‘segments’
confint,ipdlme: no visible global function definition for ‘qt’
plot,ipdlme: no visible global function definition for ‘par’
plot,ipdlme: no visible global function definition for ‘abline’
plot,ipdlme: no visible global function definition for ‘axis’
plot,ipdlme: no visible global function definition for ‘segments’
summary,ipdlme: no visible global function definition for ‘pt’
Undefined global functions or variables:
  abline axis new par pnorm pt qnorm qt segments
Consider adding
  importFrom("graphics", "abline", "axis", "par", "segments")
  importFrom("methods", "new")
  importFrom("stats", "pnorm", "pt", "qnorm", "qt")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
File ‘ipfp/libs/ipfp.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'library' or 'require' calls in package code:
  ‘MCMCpack’ ‘mvtnorm’ ‘truncnorm’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
installed size is  9.9Mb
  sub-directories of 1Mb or more:
    libs   8.6Mb
code.simple.gaps: no visible global function definition for ‘tail’
multistateMCMC: no visible global function definition for ‘write.table’
multistateMCMC: no visible global function definition for ‘read.table’
multistateMCMC: no visible global function definition for ‘tail’
multistateML: no visible global function definition for ‘tail’
multistateML: no visible global function definition for ‘write.table’
multistateML: no visible global function definition for ‘read.table’
phylo2mafft: no visible global function definition for ‘write.table’
read.beast : foo: no visible global function definition for ‘head’
read.beast: no visible global function definition for ‘tail’
read.starbeast: no visible global function definition for ‘head’
trimEnds : replaceWithN : getIndex: no visible global function
  definition for ‘head’
unresolve.clade: no visible global function definition for ‘tail’
unresolve.clade: no visible global function definition for ‘head’
write.fas: no visible global function definition for ‘tail’
Undefined global functions or variables:
  head read.table tail write.table
Consider adding
  importFrom("utils", "head", "read.table", "tail", "write.table")
to your NAMESPACE file.
Namespaces in Imports field not imported from:
  ‘Hmisc’ ‘RcmdrPlugin.IPSUR’ ‘TeachingDemos’ ‘actuar’ ‘aplpack’
  ‘binom’ ‘boot’ ‘coin’ ‘distrEx’ ‘e1071’ ‘lmtest’ ‘mvtnorm’ ‘prob’
  ‘qcc’ ‘reshape’ ‘scatterplot3d’ ‘vcd’
  All declared Imports should be used.
File ‘iRafNet/libs/iRafNet.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Packages in Depends field not imported from:
  ‘RBGL’ ‘graph’ ‘igraph’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
convert_MITAB_to_edgeList: no visible global function definition for
  ‘combn’
convert_edgeList_to_graph: no visible global function definition for
  ‘ftM2graphNEL’
convert_edgeList_to_graph: no visible global function definition for
  ‘graph.data.frame’
convert_graph_to_edgeList: no visible global function definition for
  ‘edgeWeights’
convert_graph_to_edgeList: no visible global function definition for
  ‘get.edgelist’
convert_graph_to_edgeList: no visible global function definition for
  ‘E’
create_id_conversion_table: no visible global function definition for
  ‘write.table’
get_irefindex: no visible global function definition for ‘read.table’
get_irefindex: no visible global function definition for
  ‘download.file’
get_irefindex: no visible global function definition for ‘unzip’
summary_graph: no visible global function definition for
  ‘connectedComp’
summary_graph: no visible global function definition for ‘subGraph’
summary_graph: no visible global function definition for ‘clusters’
summary_graph: no visible global function definition for ‘subgraph’
summary_graph: no visible global function definition for ‘plot’
summary_graph: no visible binding for global variable
  ‘layout.fruchterman.reingold’
Undefined global functions or variables:
  E clusters combn connectedComp download.file edgeWeights ftM2graphNEL
  get.edgelist graph.data.frame layout.fruchterman.reingold plot
  read.table subGraph subgraph unzip write.table
Consider adding
  importFrom("graphics", "plot")
  importFrom("utils", "combn", "download.file", "read.table", "unzip",
             "write.table")
to your NAMESPACE file.
Namespace in Imports field not imported from: ‘irr’
  All declared Imports should be used.
'library' or 'require' call to ‘lpSolve’ which was already attached by Depends.
  Please remove these calls from your code.
Found the following apparent S3 methods exported but not registered:
  print.icclist print.irrlist
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Rd file 'N2.cohen.kappa.Rd':
  \examples lines wider than 100 characters:
       N2.cohen.kappa(c(0.2, 0.25, 0.55), k1=0.6, k0=0.4)                                                            

These lines will be truncated in the PDF manual.
isbf: no visible global function definition for ‘var’
isbf: no visible global function definition for ‘qnorm’
isbfReg: no visible global function definition for ‘var’
isbfReg: no visible global function definition for ‘qnorm’
Undefined global functions or variables:
  qnorm var
Consider adding
  importFrom("stats", "qnorm", "var")
to your NAMESPACE file.
File ‘ISBF/libs/ISBF.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘colorRamps’ ‘virtualspecies’
  All declared Imports should be used.
File ‘isingLenzMC/libs/isingLenzMC.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
EstimateIsingLL: no visible global function definition for ‘combn’
EstimateIsingLL: no visible global function definition for ‘loglin’
EstimateIsingPL: no visible global function definition for ‘nlm’
EstimateIsingUni : <anonymous>: no visible global function definition
  for ‘glm’
EstimateIsingUni : <anonymous>: no visible binding for global variable
  ‘binomial’
EstimateIsingUni: no visible binding for global variable ‘coef’
Undefined global functions or variables:
  binomial coef combn glm loglin nlm
Consider adding
  importFrom("stats", "binomial", "coef", "glm", "loglin", "nlm")
  importFrom("utils", "combn")
to your NAMESPACE file.
File ‘IsingSampler/libs/IsingSampler.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
C.cal: no visible global function definition for ‘as.stepfun’
bandwidth.choose.cv: no visible global function definition for ‘isoreg’
g.density: no visible global function definition for ‘as.stepfun’
g.density: no visible global function definition for ‘dnorm’
h.density: no visible global function definition for ‘dnorm’
iso.bt.unit: no visible global function definition for ‘quantile’
iso.bt.unit.sub: no visible global function definition for ‘isoreg’
iso.bt.unit.sub: no visible global function definition for ‘as.stepfun’
iso.bt.wald.unit: no visible global function definition for ‘var’
iso.ci: no visible global function definition for ‘isoreg’
iso.ci.transform.unit: no visible global function definition for
  ‘as.stepfun’
Undefined global functions or variables:
  as.stepfun dnorm isoreg quantile var
Consider adding
  importFrom("stats", "as.stepfun", "dnorm", "isoreg", "quantile", "var")
to your NAMESPACE file.
ACO : bordacircular: no visible global function definition for
  ‘medianCircular’
Undefined global functions or variables:
  medianCircular
File ‘isocir/libs/isocir.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
'library' or 'require' call to ‘proxy’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
isopam : core: no visible global function definition for ‘dist’
isopam : core: no visible global function definition for ‘write.table’
isopam : core: no visible global function definition for ‘as.dist’
isopam : core: no visible global function definition for
  ‘txtProgressBar’
isopam : core: no visible global function definition for
  ‘setTxtProgressBar’
isopam : core: no visible global function definition for ‘aggregate’
isopam: no visible binding for global variable ‘var’
isopam: no visible global function definition for ‘na.omit’
isopam: no visible global function definition for ‘write.table’
isopam: no visible global function definition for ‘bmp’
isopam: no visible global function definition for ‘dev.off’
isotab: no visible global function definition for ‘aggregate’
isotab : fshtest: no visible global function definition for ‘dhyper’
isotab : fshtest : pnhyper: no visible global function definition for
  ‘phyper’
Undefined global functions or variables:
  aggregate as.dist bmp dev.off dhyper dist na.omit phyper
  setTxtProgressBar txtProgressBar var write.table
Consider adding
  importFrom("grDevices", "bmp", "dev.off")
  importFrom("stats", "aggregate", "as.dist", "dhyper", "dist",
             "na.omit", "phyper", "var")
  importFrom("utils", "setTxtProgressBar", "txtProgressBar",
             "write.table")
to your NAMESPACE file.
ufit: no visible global function definition for ‘stepfun’
Undefined global functions or variables:
  stepfun
Consider adding
  importFrom("stats", "stepfun")
to your NAMESPACE file.
File ‘Iso/libs/Iso.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘ISR3/libs/ISR3.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Packages in Depends field not imported from:
  ‘MASS’ ‘VGAM’ ‘apTreeshape’ ‘ape’ ‘geiger’ ‘gtools’ ‘partitions’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Namespace in Imports field not imported from: ‘comtradr’
  All declared Imports should be used.
Packages in Depends field not imported from:
  ‘Matching’ ‘R2jags’ ‘boot’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
bpsm: no visible global function definition for ‘glm’
bpsm: no visible global function definition for ‘binomial’
bpsm: no visible global function definition for ‘Match’
bpsm: no visible global function definition for ‘cov’
bpsm: no visible global function definition for ‘vcov’
bpsm : inits: no visible global function definition for ‘runif’
bpsm: no visible global function definition for ‘jags’
bpsr: no visible global function definition for ‘glm’
bpsr: no visible global function definition for ‘binomial’
bpsr: no visible global function definition for ‘lm’
bpsr : inits: no visible global function definition for ‘runif’
bpsr: no visible global function definition for ‘jags’
modelpsm: no visible binding for global variable ‘D’
modelpsr: no visible binding for global variable ‘D’
Undefined global functions or variables:
  D Match binomial cov glm jags lm runif vcov
Consider adding
  importFrom("stats", "D", "binomial", "cov", "glm", "lm", "runif",
             "vcov")
to your NAMESPACE file.
Found the following apparent S3 methods exported but not registered:
  print.lewbel.model
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
clusterVCV: no visible global function definition for ‘estfun’
covc: no visible global function definition for ‘sandwich’
ftest: no visible global function definition for ‘vcovHC’
Undefined global functions or variables:
  estfun sandwich vcovHC
ARsensitivity.ci: no visible global function definition for ‘residuals’
ARsensitivity.ci: no visible global function definition for ‘lm’
ARsensitivity.ci: no visible global function definition for ‘qf’
ARsensitivity.ci: no visible global function definition for ‘fitted’
ARsensitivity.power: no visible global function definition for ‘qf’
ARsensitivity.power: no visible global function definition for ‘pf’
ARsensitivity.size: no visible global function definition for ‘qf’
ARsensitivity.size: no visible global function definition for ‘pf’
anderson.rubin.ci: no visible global function definition for ‘qf’
anderson.rubin.ci: no visible global function definition for ‘fitted’
anderson.rubin.ci: no visible global function definition for ‘lm’
power.iv: no visible global function definition for ‘qf’
power.iv: no visible global function definition for ‘pf’
Undefined global functions or variables:
  fitted lm pf qf residuals
Consider adding
  importFrom("stats", "fitted", "lm", "pf", "qf", "residuals")
to your NAMESPACE file.
histw: no visible global function definition for ‘plot.new’
histw: no visible global function definition for ‘plot.window’
histw: no visible global function definition for ‘axis’
histw: no visible global function definition for ‘rect’
histw: no visible global function definition for ‘lines’
Undefined global functions or variables:
  axis lines plot.new plot.window rect
Consider adding
  importFrom("graphics", "axis", "lines", "plot.new", "plot.window",
             "rect")
to your NAMESPACE file.
Namespaces in Imports field not imported from:
  ‘Rcpp’ ‘dplyr’ ‘magrittr’
  All declared Imports should be used.
File ‘JAGUAR/libs/JAGUAR.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘MASS’ ‘ggExtra’ ‘ggplot2’ ‘grid’ ‘gridExtra’ ‘mcmcplots’
  All declared Imports should be used.
Package in Depends field not imported from: ‘gtools’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
NB: .First.lib is obsolete and will not be used in R >= 3.0.0

make_template: no visible global function definition for ‘invalid’
Undefined global functions or variables:
  invalid
File ‘JASPAR/libs/JASPAR.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
.getJavaGDObject: no visible global function definition for ‘.jmkref’
.javaGD.copy.device: no visible global function definition for
  ‘dev.cur’
.javaGD.copy.device: no visible binding for global variable ‘pdf’
.javaGD.copy.device: no visible global function definition for
  ‘dev.set’
.javaGD.copy.device: no visible global function definition for
  ‘dev.copy’
.javaGD.copy.device: no visible global function definition for ‘par’
.javaGD.copy.device: no visible global function definition for
  ‘dev.off’
.javaGD.get.size: no visible global function definition for ‘dev.cur’
.javaGD.resize: no visible global function definition for ‘dev.cur’
JavaGD: no visible global function definition for ‘.jinit’
Undefined global functions or variables:
  .jinit .jmkref dev.copy dev.cur dev.off dev.set par pdf
Consider adding
  importFrom("grDevices", "dev.copy", "dev.cur", "dev.off", "dev.set",
             "pdf")
  importFrom("graphics", "par")
to your NAMESPACE file.