Error in re-building vignettes:
  ...
Loading required package: Rcpp

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Joining, by = "gene"
Joining, by = "cell"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "cell"
Joining, by = c("cell", "capture")
Have 35 cells after filtering
Joining, by = "cell"
Have 20 genes after filtering
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "cell"
Joining, by = c("cell", "capture")
Compiling model
DIAGNOSTIC(S) FROM PARSER:
Info: left-hand side variable (name=result) occurs on right-hand side of assignment, causing inefficient deep copy to avoid aliasing.

the number of chains is less than 1; sampling not done
Saving compiled model to /tmp/RtmpsTLtrp/DeLorean-exact-sizes.rds
R2E:scaled:none:1; time=2.01599999999999s; LL=-3376.80953761289
TSP:scaled:none:1; time=2.15600000000001s; LL=-3384.17950227014
GW:scaled:none:1; time=0.00600000000000023s; LL=-3369.85423985736
HC:scaled:none:1; time=0.00399999999999068s; LL=-3447.36044015582
TSP:unscaled:none:1; time=0.00899999999998613s; LL=-3349.41042606955
OLO:scaled:none:1; time=0.00399999999999068s; LL=-3337.43178580491
HC:unscaled:none:1; time=0.00399999999999068s; LL=-3394.660050613
R2E:unscaled:none:1; time=0.00800000000000978s; LL=-3370.51633968864
OLO:unscaled:none:1; time=0.00399999999999068s; LL=-3321.3328131684
GW:unscaled:none:1; time=0.00499999999999545s; LL=-3350.84632535224
R2E:scaled:pca:1; time=0.00899999999998613s; LL=-3494.53397670552
TSP:scaled:pca:1; time=0.00800000000000978s; LL=-3486.06573148508
GW:scaled:pca:1; time=0.00399999999999068s; LL=-3494.53397670552
HC:scaled:pca:1; time=0.0029999999999859s; LL=-3491.81885189181
OLO:scaled:pca:1; time=0.0029999999999859s; LL=-3494.53397670552
TSP:unscaled:pca:1; time=0.00800000000000978s; LL=-3531.56877205592
R2E:unscaled:pca:1; time=0.00699999999997658s; LL=-3532.23212908662
HC:unscaled:pca:1; time=0.00399999999999068s; LL=-3640.92988289914
OLO:unscaled:pca:1; time=0.00499999999999545s; LL=-3464.91082830762
GW:unscaled:pca:1; time=0.00499999999999545s; LL=-3464.91082830762
R2E:scaled:ica:1; time=0.0150000000000148s; LL=-3494.53397670552
TSP:scaled:ica:1; time=0.0300000000000011s; LL=-3455.69149377838
GW:scaled:ica:1; time=0.00499999999999545s; LL=-3494.53397670552
HC:scaled:ica:1; time=0.0040000000000191s; LL=-3491.81885189181
TSP:unscaled:ica:1; time=0.00800000000000978s; LL=-3532.23212908662
OLO:scaled:ica:1; time=0.00399999999999068s; LL=-3494.53397670552
HC:unscaled:ica:1; time=0.00600000000000023s; LL=-3640.92988289914
R2E:unscaled:ica:1; time=0.00900000000001455s; LL=-3532.23212908662
OLO:unscaled:ica:1; time=0.00399999999999068s; LL=-3464.91082830762
GW:unscaled:ica:1; time=0.00499999999999545s; LL=-3464.91082830762
R2E:scaled:mds:1; time=0.00899999999998613s; LL=-3494.53397670552
TSP:scaled:mds:1; time=0.007000000000005s; LL=-3451.33795731368
GW:scaled:mds:1; time=0.00399999999999068s; LL=-3494.53397670552
HC:scaled:mds:1; time=0.00399999999999068s; LL=-3491.81885189181
TSP:unscaled:mds:1; time=0.00799999999998136s; LL=-3538.29462608972
OLO:scaled:mds:1; time=0.0040000000000191s; LL=-3494.53397670552
HC:unscaled:mds:1; time=0.00399999999999068s; LL=-3640.92988289914
R2E:unscaled:mds:1; time=0.00800000000000978s; LL=-3532.23212908662
GW:unscaled:mds:1; time=0.00499999999999545s; LL=-3464.91082830762
OLO:unscaled:mds:1; time=0.00300000000001432s; LL=-3464.91082830762
TSP:scaled:pca:2; time=0.00900000000001455s; LL=-3392.32446876283
R2E:scaled:pca:2; time=0.00899999999998613s; LL=-3390.0083253935
HC:scaled:pca:2; time=0.00399999999999068s; LL=-3549.14582796511
GW:scaled:pca:2; time=0.00399999999999068s; LL=-3432.54940699712
OLO:scaled:pca:2; time=0.0040000000000191s; LL=-3381.1659637484
TSP:unscaled:pca:2; time=0.00799999999998136s; LL=-3359.51229450261
R2E:unscaled:pca:2; time=0.00899999999998613s; LL=-3388.38901831633
HC:unscaled:pca:2; time=0.00399999999999068s; LL=-3502.69888709793
GW:unscaled:pca:2; time=0.00499999999999545s; LL=-3377.14120586974
OLO:unscaled:pca:2; time=0.00399999999999068s; LL=-3377.68193933826
TSP:scaled:kfa:2; time=0.0269999999999868s; LL=-3616.111712514
R2E:scaled:kfa:2; time=0.0300000000000011s; LL=-3596.3003207256
HC:scaled:kfa:2; time=0.00399999999999068s; LL=-3708.69532078063
GW:scaled:kfa:2; time=0.00399999999999068s; LL=-3466.93384405001
OLO:scaled:kfa:2; time=0.00399999999999068s; LL=-3597.00839456948
TSP:unscaled:kfa:2; time=0.021000000000015s; LL=-3565.23409752296
R2E:unscaled:kfa:2; time=0.0190000000000055s; LL=-3641.95179073698
HC:unscaled:kfa:2; time=0.00300000000001432s; LL=-3692.42718029421
GW:unscaled:kfa:2; time=0.0040000000000191s; LL=-3573.64934353942
OLO:unscaled:kfa:2; time=0.00399999999999068s; LL=-3572.47606839966
TSP:scaled:ica:2; time=0.0300000000000011s; LL=-3410.22764020647
R2E:scaled:ica:2; time=0.0289999999999964s; LL=-3458.28311160555
HC:scaled:ica:2; time=0.00399999999999068s; LL=-3504.21621948399
GW:scaled:ica:2; time=0.00499999999999545s; LL=-3470.34025049029
OLO:scaled:ica:2; time=0.0040000000000191s; LL=-3406.46787037417
TSP:unscaled:ica:2; time=0.00999999999999091s; LL=-3350.92808598607
R2E:unscaled:ica:2; time=0.0109999999999957s; LL=-3450.54039904344
HC:unscaled:ica:2; time=0.0040000000000191s; LL=-3449.61646516949
GW:unscaled:ica:2; time=0.00399999999999068s; LL=-3394.92924667718
OLO:unscaled:ica:2; time=0.0040000000000191s; LL=-3367.77928109742
TSP:scaled:mds:2; time=0.00900000000001455s; LL=-3406.25220544955
R2E:scaled:mds:2; time=0.0180000000000007s; LL=-3390.0083253935
HC:scaled:mds:2; time=0.00399999999999068s; LL=-3549.14582796511
GW:scaled:mds:2; time=0.0029999999999859s; LL=-3432.54940699712
OLO:scaled:mds:2; time=0.00399999999999068s; LL=-3381.1659637484
TSP:unscaled:mds:2; time=0.007000000000005s; LL=-3392.52584463364
R2E:unscaled:mds:2; time=0.00799999999998136s; LL=-3388.38901831633
HC:unscaled:mds:2; time=0.00399999999999068s; LL=-3502.69888709793
GW:unscaled:mds:2; time=0.00499999999999545s; LL=-3377.14120586974
OLO:unscaled:mds:2; time=0.0040000000000191s; LL=-3377.68193933826
TSP:scaled:pca:4; time=0.00800000000000978s; LL=-3366.60242998062
HC:scaled:pca:4; time=0.00399999999999068s; LL=-3522.90838253521
R2E:scaled:pca:4; time=0.00999999999999091s; LL=-3377.76982721287
OLO:scaled:pca:4; time=0.00399999999999068s; LL=-3364.61126857375
GW:scaled:pca:4; time=0.0040000000000191s; LL=-3364.82147998749
R2E:unscaled:pca:4; time=0.00900000000001455s; LL=-3345.39736003712
TSP:unscaled:pca:4; time=0.007000000000005s; LL=-3332.01247012705
GW:unscaled:pca:4; time=0.00399999999999068s; LL=-3330.23279544913
HC:unscaled:pca:4; time=0.0040000000000191s; LL=-3385.73384923122
TSP:scaled:kfa:4; time=0.0240000000000009s; LL=-3524.10502793635
OLO:unscaled:pca:4; time=0.00399999999999068s; LL=-3335.47719296921
HC:scaled:kfa:4; time=0.00399999999999068s; LL=-3632.30301380497
R2E:scaled:kfa:4; time=0.0240000000000009s; LL=-3465.50159421882
OLO:scaled:kfa:4; time=0.0040000000000191s; LL=-3603.94117343553
GW:scaled:kfa:4; time=0.00500000000002387s; LL=-3428.29063371917
R2E:unscaled:kfa:4; time=0.0219999999999914s; LL=-3473.78782194165
TSP:unscaled:kfa:4; time=0.0240000000000009s; LL=-3530.72574423023
GW:unscaled:kfa:4; time=0.00499999999999545s; LL=-3515.92329308113
HC:unscaled:kfa:4; time=0.00399999999999068s; LL=-3614.69854193008
TSP:scaled:ica:4; time=0.0249999999999773s; LL=-3392.15031462236
OLO:unscaled:kfa:4; time=0.0040000000000191s; LL=-3500.20678721784
HC:scaled:ica:4; time=0.00399999999999068s; LL=-3586.75429190462
R2E:scaled:ica:4; time=0.01400000000001s; LL=-3468.23373177196
OLO:scaled:ica:4; time=0.00399999999999068s; LL=-3391.5133594572
GW:scaled:ica:4; time=0.00399999999999068s; LL=-3610.51029251544
R2E:unscaled:ica:4; time=0.0169999999999959s; LL=-3455.18811367129
TSP:unscaled:ica:4; time=0.0300000000000011s; LL=-3332.71421674418
GW:unscaled:ica:4; time=0.00399999999999068s; LL=-3490.82801405568
HC:unscaled:ica:4; time=0.00399999999999068s; LL=-3643.06394293746
TSP:scaled:mds:4; time=0.00899999999998613s; LL=-3370.69555773397
OLO:unscaled:ica:4; time=0.0029999999999859s; LL=-3418.298503207
HC:scaled:mds:4; time=0.00399999999999068s; LL=-3522.90838253521
R2E:scaled:mds:4; time=0.0100000000000193s; LL=-3377.76982721287
OLO:scaled:mds:4; time=0.0040000000000191s; LL=-3364.61126857375
GW:scaled:mds:4; time=0.00399999999999068s; LL=-3364.82147998749
R2E:unscaled:mds:4; time=0.00900000000001455s; LL=-3345.39736003712
TSP:unscaled:mds:4; time=0.00799999999998136s; LL=-3339.37962952909
GW:unscaled:mds:4; time=0.00499999999999545s; LL=-3330.23279544913
HC:unscaled:mds:4; time=0.00499999999999545s; LL=-3385.73384923122
TSP:scaled:pca:8; time=0.00900000000001455s; LL=-3366.53920505345
OLO:unscaled:mds:4; time=0.00399999999999068s; LL=-3335.47719296921
HC:scaled:pca:8; time=0.00799999999998136s; LL=-3475.80772717267
R2E:scaled:pca:8; time=0.0100000000000193s; LL=-3399.79697127989
OLO:scaled:pca:8; time=0.00399999999999068s; LL=-3359.82650380993
GW:scaled:pca:8; time=0.00399999999999068s; LL=-3419.81632787939
R2E:unscaled:pca:8; time=0.00899999999998613s; LL=-3361.02310615109
TSP:unscaled:pca:8; time=0.00799999999998136s; LL=-3375.716050525
GW:unscaled:pca:8; time=0.00399999999999068s; LL=-3340.06516235149
HC:unscaled:pca:8; time=0.00399999999999068s; LL=-3460.25475712204
OLO:unscaled:pca:8; time=0.0040000000000191s; LL=-3325.11395836389
TSP:scaled:kfa:8; time=0.0339999999999918s; LL=-3390.79140539704
HC:scaled:kfa:8; time=0.00300000000001432s; LL=-3466.52560986484
R2E:scaled:kfa:8; time=0.0339999999999918s; LL=-3486.95055741531
OLO:scaled:kfa:8; time=0.00399999999999068s; LL=-3374.43059470659
GW:scaled:kfa:8; time=0.00399999999999068s; LL=-3447.48809309151
R2E:unscaled:kfa:8; time=0.0320000000000107s; LL=-3419.03069907579
TSP:unscaled:kfa:8; time=0.0300000000000011s; LL=-3411.89520412231
HC:unscaled:kfa:8; time=0.00399999999999068s; LL=-3494.20436122577
GW:unscaled:kfa:8; time=0.0040000000000191s; LL=-3441.27641121054
OLO:unscaled:kfa:8; time=0.00399999999999068s; LL=-3404.20214484873
TSP:scaled:ica:8; time=0.0200000000000102s; LL=-3551.98177002096
HC:scaled:ica:8; time=0.00399999999999068s; LL=-3545.5822792254
OLO:scaled:ica:8; time=0.0040000000000191s; LL=-3441.59689723701
R2E:scaled:ica:8; time=0.186000000000007s; LL=-3720.64196879196
GW:scaled:ica:8; time=0.00600000000000023s; LL=-3539.23870541254
R2E:unscaled:ica:8; time=0.115999999999985s; LL=-3748.30990241562
GW:unscaled:ica:8; time=0.00499999999999545s; LL=-3591.96927771452
TSP:unscaled:ica:8; time=0.131s; LL=-3566.48617207015
TSP:scaled:mds:8; time=0.0109999999999957s; LL=-3365.89383970531
HC:unscaled:ica:8; time=0.00499999999999545s; LL=-3679.41975704488
HC:scaled:mds:8; time=0.00399999999999068s; LL=-3475.80772717267
OLO:unscaled:ica:8; time=0.00399999999999068s; LL=-3551.67748027285
OLO:scaled:mds:8; time=0.00399999999999068s; LL=-3359.82650380993
R2E:scaled:mds:8; time=0.0100000000000193s; LL=-3377.03855117461
R2E:unscaled:mds:8; time=0.00899999999998613s; LL=-3361.02310615109
GW:scaled:mds:8; time=0.00399999999999068s; LL=-3419.81632787939
GW:unscaled:mds:8; time=0.00499999999999545s; LL=-3340.06516235149
TSP:unscaled:mds:8; time=0.00800000000000978s; LL=-3318.87370005116
HC:unscaled:mds:8; time=0.0040000000000191s; LL=-3460.25475712204
OLO:unscaled:mds:8; time=0.00399999999999068s; LL=-3325.11395836389
Using ordering TSP:unscaled:mds:8; LL=-3318.87370005116
Using ordering OLO:unscaled:none:1; LL=-3321.3328131684
Joining, by = "c"
In file included from file793d1c5c7406.cpp:3:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/Dense:1:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/Core:531:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file793d1c5c7406.cpp:3:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/Dense:2:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/LU:47:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file793d1c5c7406.cpp:3:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/Dense:3:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/Cholesky:12:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/Jacobi:29:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file793d1c5c7406.cpp:3:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/Dense:3:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/Cholesky:43:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file793d1c5c7406.cpp:3:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/Dense:4:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/QR:17:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/Householder:27:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file793d1c5c7406.cpp:3:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/Dense:5:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/SVD:48:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file793d1c5c7406.cpp:3:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/Dense:6:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/Geometry:58:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file793d1c5c7406.cpp:3:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/Dense:7:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/Eigenvalues:58:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file793d1c5c7406.cpp:3:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/SparseCore:66:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file793d1c5c7406.cpp:3:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/Sparse:27:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/OrderingMethods:71:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file793d1c5c7406.cpp:3:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/SparseCholesky:43:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file793d1c5c7406.cpp:3:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/Sparse:32:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/SparseQR:35:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file793d1c5c7406.cpp:3:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/Sparse:33:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file793d1c5c7406.cpp:3:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigenForward.h:32:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/CholmodSupport:45:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file793d1c5c7406.cpp:3:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigenForward.h:35:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file793d1c5c7406.cpp:3:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigenForward.h:39:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file793d1c5c7406.cpp:3:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/RcppEigenForward.h:40:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file793d1c5c7406.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:309:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/prob/multinomial_rng.hpp:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/binomial_rng.hpp:10:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/random/binomial_distribution.hpp:407:9: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types]
        struct {
        ^
In file included from file793d1c5c7406.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/heterogeneous_system.hpp:34:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file793d1c5c7406.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/dimension.hpp:21:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file793d1c5c7406.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/dimension.hpp:21:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/detail/dimension_list.hpp:131:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file793d1c5c7406.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/detail/linear_algebra.hpp:20:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file793d1c5c7406.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/detail/unscale.hpp:28:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file793d1c5c7406.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/detail/conversion_impl.hpp:20:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file793d1c5c7406.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/detail/conversion_impl.hpp:21:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file793d1c5c7406.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file793d1c5c7406.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:49:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal.hpp:316:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_2_ccdf_log.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_2_lccdf.hpp:11:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_ccdf_log.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_lccdf.hpp:24:
In file included from /tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/random/negative_binomial_distribution.hpp:21:
/tmp/RtmpOMdQoz/RLIBS_1a2c6165fa56/BH/include/boost/random/poisson_distribution.hpp:338:9: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types]
        struct {
        ^
file793d1c5c7406.cpp:223:1: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
matrix_d
^~~~~~~~
stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file793d1c5c7406.cpp:224:21: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
cov_symmetric(const row_vector_d& tau,
                    ^~~~~~~~~~~~
                    stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file793d1c5c7406.cpp:272:9: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
        matrix_d
        ^~~~~~~~
        stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file793d1c5c7406.cpp:273:22: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
    operator()(const row_vector_d& tau,
                     ^~~~~~~~~~~~
                     stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file793d1c5c7406.cpp:281:1: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
matrix_d
^~~~~~~~
stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file793d1c5c7406.cpp:282:11: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
cov(const row_vector_d& tau1,
          ^~~~~~~~~~~~
          stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file793d1c5c7406.cpp:283:15: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
        const row_vector_d& tau2,
              ^~~~~~~~~~~~
              stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file793d1c5c7406.cpp:325:9: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
        matrix_d
        ^~~~~~~~
        stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file793d1c5c7406.cpp:326:22: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
    operator()(const row_vector_d& tau1,
                     ^~~~~~~~~~~~
                     stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file793d1c5c7406.cpp:327:15: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
        const row_vector_d& tau2,
              ^~~~~~~~~~~~
              stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file793d1c5c7406.cpp:336:30: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
pretty_print_tri_lower(const matrix_d& x) {
                             ^~~~~~~~
                             stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file793d1c5c7406.cpp:386:22: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
    operator()(const matrix_d& x, std::ostream* pstream__ = &Rcpp::Rcout) const {
                     ^~~~~~~~
                     stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file793d1c5c7406.cpp:456:1: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
matrix_d cov_symmetric(const row_vector_d& tau, const int& periodic, const double& period, const double& l);
^~~~~~~~
stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file793d1c5c7406.cpp:456:30: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
matrix_d cov_symmetric(const row_vector_d& tau, const int& periodic, const double& period, const double& l);
                             ^~~~~~~~~~~~
                             stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file793d1c5c7406.cpp:461:42: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
    Rcpp::traits::input_parameter< const row_vector_d& >::type tau(tauSEXP);
                                         ^~~~~~~~~~~~
                                         stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file793d1c5c7406.cpp:470:1: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
matrix_d cov(const row_vector_d& tau1, const row_vector_d& tau2, const int& periodic, const double& period, const double& l);
^~~~~~~~
stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file793d1c5c7406.cpp:470:20: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
matrix_d cov(const row_vector_d& tau1, const row_vector_d& tau2, const int& periodic, const double& period, const double& l);
                   ^~~~~~~~~~~~
                   stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file793d1c5c7406.cpp:470:46: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
matrix_d cov(const row_vector_d& tau1, const row_vector_d& tau2, const int& periodic, const double& period, const double& l);
                                             ^~~~~~~~~~~~
                                             stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file793d1c5c7406.cpp:475:42: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
    Rcpp::traits::input_parameter< const row_vector_d& >::type tau1(tau1SEXP);
                                         ^~~~~~~~~~~~
                                         stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
27 warnings and 20 errors generated.
make[1]: *** [/home/hornik/tmp/R.check/r-devel-clang/Work/build/etc/Makeconf:166: file793d1c5c7406.o] Error 1
Quitting from lines 145-146 (DeLorean.Rmd) 
Here is the C++ code that does not compile. Please report bug.
Error: processing vignette ‘DeLorean.Rmd’ failed with diagnostics:
Error 1 occurred building shared library.
Execution halted