08:45 - 09:15 |
Welcome (Room: Red) |
09:15 - 10:00 |
Invited Lecture (Room: Red, Chair: Richard Heiberger) Frank E. Harrell Jr Information Allergy [Harrell] |
10:00 - 10:45 |
Invited Lecture (Room: Red, Chair: William Guthrie) Mark S. Handcock Statistical Modeling of Networks in R [Handcock] |
10:45 - 11:00 |
Coffee Break |
11:00 - 12:00 | useR! Focus |
| Pedagogy 1 (Room: A, Chair: Jay Emerson) Brian A. Danielak, Andrew Elby, Eric Kuo, Michael M. Hull Using R to Assess Mathematical Sense-Making in Introductory Physics Courses Richard M. Heiberger An Intermediate Course in Statistical Computing G. Jay Kerns The IPSUR package: an Introduction to Probability and Statistics Using R |
| Biostatistics 1 (Room: B, Chair: Ying Yun Liu) Christopher Bilder, Boan Zhang, Frank Schaarschmidt, Joshua Tebbs binGroup: A Package for Group Testing Michael Fay Two-sided Exact Tests and Matching Confidence Intervals for Discrete Data Bill Pikounis, John Oleynick The cg package for comparison of groups |
| GUIs 1 (Room: D, Chair: John Fox) Ralf Bierig, Jacek Gwizdka, Michael Cole, Nicholas Belkin An Experiment Data Analysis Framework: Evaluating Interactive Information Behaviour with R Dedi Rosadi Teaching Time Series analysis course using RcmdrPlugin.Econometrics John Verzani The traitr package |
| Grid computing (Room: Green, Chair: Dirk Eddelbuettel) Karim Chine User friendly distributed computing with R Yann Richet, David Ginsbourger, Olivier Roustant, Yves Deville A Grid Computing Environment for Design and Analysis of Computer Experiments |
| Gene expressions, genetics (Room: PR, Chair: Jing Hua Zhao) Tal Galili, Shaul Shaul, Yoav Benjamini Analyzing the Operational RNA Code for Amino Acids - Using R John Kloke, Joseph McKean, Patrick Kimes, Hilary Parker Adaptive Nonparametric Statistics with Applications to Gene Expression Data |
| Computer experiments and simulation (Room: Red, Chair: Robin Hankin) Andreas Alfons, Matthias Templ, Peter Filzmoser The R package simFrame: An object-oriented approach towards simulation studies in
statistics Neil Diamond Using R for the Visualisation of Computer Experiments |
12:00 - 13:00 |
Panel Discussion (Room: Red, Chair: Lou Bajuk-Yorgan): Challenges Bringing R into Commercial Environments [Abstract] |
13:00 - 14:00 |
Lunch Break |
14:00 - 15:30 | useR! Kaleidoscope I (Room: Red, Chair: Uwe Ligges) John Fox The RcmdrPlugin.survival Package: A Survival-Analysis GUI for R Christian Gunning Using Rwave to detect synchrony of influenza between U.S. states Z.Q. John Lu, F. Potra, A. J. Wang Fitting Multiphase Regression Models in R with Applications in Microarray Experiments Heather Turner, David Firth BradleyTerry2: Flexible Models for Paired Comparisons Jing Hua Zhao Use of R in Genetic Epidemiology Designs |
| useR! Kaleidoscope II (Room: Green, Chair: Francois Husson) Dirk Eddelbuettel, Romain Francois Rcpp: Seamless R and C++ integration Landon Jensen steReoscopy Jeffrey Ryan Column Databases Made Easy with R Yihui Xie Creating Animations with R |
| useR! Kaleidoscope III (Room: PR, Chair: Joerg Polzehl) Jonathan Lees The Haiti Earthquake: Seismological Analysis Using R Martin Maechler, Douglas Bates Sparse Model Matrices for (Generalized) Linear Models Paul Rustomji, Brent Henderson, Katie Mills, Bai Qifeng R as a statistical engine for a water quality trend analysis web -service Daniel V. Samarov Generalized Significance in Scale Space: The GS3 Package Matthias Templ, Karel Hron, Peter Filzmoser robCompositions: An R-package for robust statistical analysis of compositional data |
15:30 - 15:55 |
Coffee Break |
15:55 - 16:55 | useR! Focus |
| Pedagogy 2 (Room: A, Chair: G. Jay Kerns) Ken Aho Teaching statistics to biologists: the R-library asbio Daniel Kaplan Computers and the Teaching of Statistics Thomas Roth, Joachim Herrmann Teaching Statistics in Quality Science using the R-Package qualityTools |
| Biostatistics 2 (Room: B, Chair: Frank E. Harrell) Nelson Afanador Using R for Data Mining in Vaccine Manufacturing: Finding Needles in Biological Haystacks Michael Halter, Daniel R. Sisan, K.M. Mullen, Z.Q. John Lu Statistical Analysis of Cell Population Data Yingyun Liu Using R for Data Simulation and Regression of Isothermal Titration Calorimetry of Proteins
with Alternative Conformations |
| GUIs 2 (Room: D, Chair: Szilard Pafka) Ian Fellows Deducer: A Graphical useR interface for everyone Sheri Gilley Designing a Flexible GUI for R Tom Taverner, Ashoka Polpitiya, Gordon A Anderson, Richard D Smith RGtk2Extras and DanteR: rapid GUI development for an "omics" R package |
| High-performance computing (Room: Green, Chair: Stefan Theussl) Mario Inchiosa, Cezary Dendek, Przemysaw Biecek Scalable linear algebra with the nzmatrix package Muriel Mewissen, Thorsten Forster, Terry Sloan, Savvas Petrou SPRINT: a Simple Parallel INTerface to High Performance Computing and a Parallel R Function
Library. Neil Shah, Guruprasad Kora, Paul Breimyer, Yekaterina Shpanskaya pR: Enabling Automatic Parallelization of Data-Parallel Tasks and Interfacing Parallel
Computing Libraries in R with Application to Fusion Reaction Simulations |
| Bioinformatics workflows (Room: PR, Chair: Andy Liaw) Leslie AICHAOUI-DENEVE, Vincent FROMION, Matthieu JULES, Ludovic LE CHAT BaSyLiCA:A web interface for automatic process of Live Cell Array data using R Michal Figurski, Leslie Shaw Estimation of the Area-Under-the-Curve of Mycophenolic Acid using population
pharmacokinetic and multi-linear regression models simultaneously Setia Pramana, Dan Lin, Philippe Haldermans, Ziv Shkedy IsoGeneGUI: a graphical user interface for analyzing dose-response studies in microarray
experiments |
| Workflows (Room: Red, Chair: Richard Heiberger) Xuefei Mi, H. Friedrich Utz, Albrecht E. Melchinger Integrated Development of the Software with Literate Programming: An Example in Plant
Breeding Anup Parikh, Kyle Covington Red-R: A visual programming and data analysis framework |
17:00 - 18:00 | useR! Focus |
| Pedagogy 3 (Room: A, Chair: John Verzani) Arnau Mir, Margaret Miro-Julia, Monica J. Ruiz-Miro Using R for Active Learning and Self-assesment in an e-Learning Environment Fausto Molinari, Martina Salvadori R-Adamant: Financial technical analysis made easy |
| Biostatistics workflows (Room: B, Chair: Marc Schwartz) Yauheniya Cherkas, Javier Cabrera, Birol Emir, Ha Nguyen PfarMineR: An User-Friendly Expandable Front-End For Biopharmaceutical Applications with R Sourish Saha, Vladimir Anisimov, Valerii Fedorov, Richard Heiberger Drug Supply Modeling Software Jeff Skinner, VIvek Gopalan, Jason Barnett, Yentram Huyen Automating biostatistics workflows for bench scientists using R-based web-tools |
| Visualization (Room: D, Chair: Nicholas Lewin-Koh) Richard M. Heiberger, G. Jay Kerns A Plot Method for "htest" Objects Wesley Turner, Jeff Baumes, Phillipe Pebay, Thomas Otahal Integration of R to VTK, Adding Statistical Computation to a Visualization Toolkit Marie Vendettuoli, Dianne Cook, Heike Hofmann Points, Curves and Haystacks: Datavis and Metabolomics |
| Parallel computing (Room: Green, Chair: David Smith) Przemyslaw Biecek, Pawel Chudzian, Cezary Dendek, Justin Lindsey Massively parallel analytics for large datasets in R with nza package Norman Matloff Rdsm: Distributed (Quasi-)Threads Programming in R Junji Nakano, Ei-ji Nakama Parallel Computing with R using GridRPC |
| Longitudinal data analysis (Room: PR, Chair: Michael Messner) M. Helena Goncalves, M. Salome Cabral, Adelchi Azzalini bild: a package for BInary Longitudinal Data Pete Philipson, Ruwanthi Kolamunnage-Dona, Ines Sousa Software for the joint modelling of longitudinal and survival data: the JoineR package Yue Wang, Narinder Nangia Bayesian Monitoring of A Longitudinal Clinical Trial Using R2WinBUGS |
| R social networks (Room: Red, Chair: Mark S. Handcock) Tal Galili Blogging about R Eric Sun Criss-Crossing the Org Chart: Predicting Colleague Interactions with R George Zhang Social network analysis with R sna package |
18:00 - 19:30 | useR! Poster Session |
| Poster session Kuntal Bhattacharyya, Pratim Datta, David Booth To Do or Not To Do Business with a Country: A Robust Classification Approach Richard Bilonick Analysis of Data from Method Comparison Studies Using R, merror, and OpenMx Max Buot Estimating a multivariate normal covariance matrix subject to a Loewner ordering Jeff Cromwell Model Maker 1: Using Model Based Ontologies for Agent Based Estimation and Learning of R Packages Nadeem Faiz A Simple Visualization of S and P 500 Index Performance Tom Filloon, Dave Dunlop How to Effectively Visualize and Quantify a 3-D Image? Panayotis Giannakouros, Lihua Chen Introducing computational thinking with free software in a math for liberal arts course Ron Guida Parallelizing a Computationally Intensive Financial R Application with Zircon Technology Bryan Hanson ChemoSpec: An R Package for the Chemometric Analysis of Spectroscopic Data Ivan Kojadinovic, Jun Yan Tests in Modeling Continuous Multivariate Distributions Using Copulas Fayaz Kondagula, Karl Molt Infrared Spectrometric Purity Control of Chemical Substances using R Michael Larsen Teaching Survey Sampling Theory using R Autumn Laughbaum Animated Graphics using R Ana Carolina CN Mafra, Ricardo Cordeiro, Luciana B Nucci, Celso Stephan Generalized additive models to nomial responses using bivariate Kernel: an solution to spatial analysis.Generalized additive models to nomial responses using bivariate Kernel: an solution to spatial analysis. Inga Maslova R package wfIMA: Wavelet-Functional Indexes of Magnetic Activity Vincent Negre, Caroline Domerg, Juliette Fabre, Anne Tireau Using R for data management in ecophysiology Information Systems Ashoka Polpitiya, Navdeep Jaitly, Konstantinos Petritis A Tool for Quantitative Analysis of Proteomics Data Tom Taverner, Ashoka Polpitiya, Gordon A Anderson, Richard D Smith RGtk2Extras and DanteR: rapid GUI development for an "omics" R package Paul Teetor Analytics for Trading Financial Spreads Joan Vila, Montse Rue, Nuria Codern, Albert Sorribas Teaching Statistics: An example of "How to'' improve the students' statistical skills using individualized assignments David Wheeler, Kai Yu, Melissa Friesen Are there latent decision rules in expert occupational exposure assessments? |
09:00 - 09:45 |
Invited Lecture (Room: Red, Chair: John Lu) Luke Tierney Some possible directions for the R engine |
09:45 - 10:30 |
Invited Lecture (Room: Red, Chair: Hrishikesh Vinod) Diethelm Würtz
The Hull, the Feasible Set, and the Risk Surface:
A Review of the Portfolio Modeling Infrastructure in R/Rmetrics [Würtz]
|
10:30 - 11:00 |
Coffee Break |
11:00 - 12:30 | useR! Focus |
| Biostatistics 3 (Room: A, Chair: Kevin Wright) Joseph Kahn, Peter Danenberg, Sourav Das, Derek Ayers Model simulation and decision analysis with the SimR package in R Guido Knapp, Bimal Sinha, Dihua Xu Extracting within-experiment precision of horticultural experiments useful for
meta-analysis Frank Mannino, Richard Heiberger, Valerii Fedorov Stochastic modeling and simulation in the design of multicenter clinical trials Yue Shentu visualization of titrated dose and recurring events using R/ggplot2 |
| Business intelligence (Room: B, Chair: Michele Chambers) Ettore Colombo, Gloria Ronzoni, Matteo Fontana R role in Business Intelligence Software Architecture Andrew Lampitt Placing the Power of R into Your Hands David Reinke, Steve Miller R and BI -- Integrating R with Open Source Business Intelligence Platforms Pentaho and
Jaspersoft Liang Wei, Brendan Kitts Analyzing Direct Marketing Data with R |
| Modeling (Room: D, Chair: Heather Turner) Giles Crane, Cynthia Collins, Karin Mille Evaluating Grant Applications with Generalized Chain Block Designs in R Guria Sibnarayan Diagnostics in Count Data Model Mark van der Loo Distribution based outlier detection with the extremevalues package Alex Zolot Generalized Linear Mixed Model with Spatial Covariates |
| Spatio-temporal data analysis (Room: Green, Chair: Virgilio Gomez-Rubio) Thomas Achia Generalized linear spatial modeling of HIV in Kenya Benjamin Mazzotta Trade Cartograms: a Graphical Method for Dyadic Datasets Qiushan Tao ChinaMap: Maps of China for analysing spatial data |
| Interfaces (Room: PR, Chair: Romain Francois) Karl-Dieter Crisman Sage and R: Using R via the Sage notebook Andrew Redd NppToR: R Interaction for Notepad++ Andrew Runnalls CXXR and Add-on Packages Ansgar Steland A high-performance compiler for a subset of R |
12:30 - 13:30 |
Lunch Break |
13:30 - 15:00 | useR! Kaleidoscope I (Room: Red, Chair: Douglas Bates) Dai Feng, Luke Tierney mritc - A package for MRI tissue classification Max Kuhn The caret Package: A Unified Interface for Predictive Models Joerg Polzehl, Karsten Tabelow Statistical Issues in Accessing Brain Functionality and Anatomy Soeren Sonnenburg, Gunnar Raetsch, Sebastian Henschel, Christian Widmer SHOGUN - A Large Scale Machine Learning Toolbox Stefan Theussl, Kurt Hornik, David Meyer Many Solvers, One Interface - ROI, the R Optimization Infrastructure Package |
| useR! Kaleidoscope II (Room: Green, Chair: Jan de Leeuw) Zack Almquist US Census Spatial and Demographic Data in R: the UScensus2000-suite of packages Erich Neuwirth Investigating ODEs with R and spreadsheets Jeremy Raw TravelR: Travel Demand Modeling in R Ganesh Subramaniam, Ravi Varadhan, Simon Urbanek, Sam Epstein tsX: An R package for the exploratory analysis of a large collection of time-series Hrishikesh Vinod Time Series Inference Applications of R in Finance and Econometrics |
| useR! Kaleidoscope III (Room: PR, Chair: Jim Porzak) Lou Bajuk-Yorgan, Stephen Kaluzny Making R accessible to Business Analysts with TIBCO Spotfire Alex Guazzelli, Konstantinos Stathatos, Michael Zeller PMML Execution of R Built Predictive Solutions Brian Hess, Michele Chambers Analytics at Scale with R Jim Porzak Marketing Analytics in R David Smith Evolving R for Use in Commercial Environments |
15:00 - 15:25 |
Coffee Break |
15:25 - 16:55 | useR! Focus |
| fMRI (Room: Green, Chair: Brandon Whitcher) Gang Chen, Ziad Saad, Robert Cox Statistical Analysis Programs in R for FMRI Data Bjorn Roelstraete, Yves Rosseel spmR: An R package For fMRI Data Analysis Based On The SPM Algorithms. Daniela Ushizima Front propagation using fast marching in R |
| Time series (Room: B, Chair: Diethelm Wuertz) Giuseppe Bruno Monte Carlo Simulation for Pricing European and American Basket option Marlene Marchena The bullwhip effect under a generalized demand process: an R implementation Irina Roslyakova Modified segmentation methods of quasi-stationary time series Robert Samohyl, Elisa Henning Forecast Monitoring via Multivariate Statistical Process Control with R |
| RuG panel discussion (Room: Red, Chair: Derek Norton) Porzak Jim, Conway Drew, Pafka Szilard, Nash John Panel on Starting and Building a Local R User Group |
| Social sciences (Room: D, Chair: Olivia Lau) Patrick Mair, Reinhold Hatzinger New developments for extended Rasch modeling in R Yves Rosseel lavaan: an R package for structural equation modeling and more Eric Wu, Patrick Mair, Peter Bentler The REQS package for linking the SEM software EQS to R |
| Spreadsheets and RExcel (Room: PR, Chair: Erich Neuwirth) Adrian Dragulescu Read, write, format Excel 2007 (xlsx) files Keith Halbert, Richard Heiberger, Erich Neuwirth Export pivot table to R using RExcel Christopher Snyder, Keith Halbert Plotting Advanced Mathematical Functions in Excel Using RExcel |
17:00 - 18:00 | useR! Focus |
| Data manipulation and classification (Room: A, Chair: Julie Josse) Christopher Brown Venn : Powerful and High-Level and Set Manipulating ... a whole new way of working with
data Drew Conway Real-time network analysis in R using Twitter Pascal Neveu, Juliette Fabre Using ontologies for R functions management |
| Optimization (Room: Green, Chair: Ravi Varadhan) Steven Ellis An Algorithm for Unconstrained Quadratically Penalized Convex Optimization Jo Reynaerts, Ravi Varadhan, John C. Nash The Convergence Properties of the BLP (1995) Contraction Mapping and Alternative Algorithms
in R Ravi Varadhan SQUAREM: An R package for Accelerating Slowly Convergent Fixed-Point Iterations Including
the EM and MM algorithms |
| Commercial applications 2 (Room: B, Chair: Michael M. Meyer) Derek Norton David v. Goliath: How to build an R presence in a corporate SAS environment Richard Pugh, John James Navigator: creating and managing complex graphics in a production environment Doug Schmidt Adaptive Middleware and High Performance Software For Multi-core Deployments Across Cloud Configurations |
| Lists and objects (Room: D, Chair: David Gil) Christopher Brown Eat your hashes! Hash come to R Romain Francois, Dirk Eddelbuettel RProtoBuf: Protocol Buffers for R John James Use of and Using R as on Object Oriented Language |
| Cloud computing (Room: PR, Chair: Michael O'Connell) Karim Chine Elastic-R, a Google docs-like portal for data analysis in the Cloud Hsin-Ying Hsieh, Kun-Hsien Lin, Sun-Chong Wang Cloud-R: toward a community-backed R in the cloud Jeroen Ooms Web development with R |
| Real-time computing (Room: Red, Chair: Jeffrey Ryan) Zubin Dowlaty, Deepak Bysani Using R in an Event Driven Service Architecture John Emerson, Michael Kane, Bryan Lewis Real-time processing and analysis of data streams Erich Neuwirth, Julia Theresa Csar Prototyping Preventive Maintenance Tools with R |
09:00 - 09:45 |
Invited Lecture (Room: Red, Chair: Daniel Samarov) Friedrich Leisch Reproducible Statistical Research in Practice [Leisch] |
09:45 - 10:30 |
Invited Lecture (Room: Red, Chair: Jonathon Phillips) Uwe Ligges
Prospects and Challenges for CRAN - with a glance on 64-bit
Windows binaries [Ligges] |
10:30 - 11:00 |
Coffee Break |
11:00 - 12:30 | useR! Focus |
| Reproducible research and generating reports (Room: A, Chair: Martin Maechler) Carlin Brickner, Iordan Slavov, Rocco Napoli Graphics Device Tabular Output Abhijit Dasgupta Flexible report generation and literate programming using R and Python's docutils module Christophe Genolini, Bernard Desgraupes, Lionel Riou Franca R to LaTeX / HTML Hector Sanz, Isaac Subirana, Joan Vila Bivariate Analyses |
| Finance and resource allocation (Room: B, Chair: Paul Gilbert) Dirk Eddelbuettel, Khanh Nguyen RQuantLib: Bridging QuantLib and R Gloria Ronzoni, Ettore Colombo, Matteo Fontana R for Labour Market Policies Jeffrey Ryan Trading in Real Time with R and IBrokers |
| Commercial applications 1 (Room: D, Chair: Kerstin Pietzko) Brian Hess, Michele Chambers In-database analytics with R Mieczyslaw Klopotek, Przemyslaw Biecek, Justin Lindsey Simple Bayesian Networks on Netezza Box Bill Ladd Structured Text Access and Analysis Michael OConnell, Subra Subramanian The use of R, S+ and Spotfire in the Oracle Life Sciences Data Hub Environment |
| Data mining, machine learning (Room: Red, Chair: Bryan Hanson) Collin Bennett, Dave Locke, Robert Grossman, Steve Vejcik Building Segmented Models Using R and Hadoop Shengqiao Li, Donald Adjeroh, E. James Harner Random KNN Classification and Regression Margaret Mio-Julia, Arnau Mir, Monica J. Ruiz-Miro R-TREE: Implementation of Decision Trees using R |
| metRology (Room: PR, Chair: Antonio Possolo) W. F. Guthrie, H. Liu An Excel Interface for Functions in the meRology Package Rudiger Kessel Automatic R-script generation for Monte Carlo Simulations Hung-kung Liu, Steve Ellison, William Guthrie, Antonio Possolo metRology - a new R package for statistical metrology James Yen, Stephen Ellison Analysis of interlaboratory studies using R and the metRology package |
12:30 - 13:30 |
Lunch Break |
13:30 - 13:45 |
Closing remarks (Room: Red) |
13:45 - 16:30 |
Invited Lecture (Room: Red, Chair: Katharine Mullen) Richard Stallman Free Software in Ethics and in Practice [Stallman] |
These sessions with oral presentations of 15 minutes each will give a broad overview of the many different applications and usages of the R system that should appeal to a broader audience. Each talk is directly followed by a discussion.
These sessions with oral presentations of 15 minutes each will focus on topics of special interest and their goal is to provoke fruitful discussions in the respective user communities (e.g. Robust Statistics or Econometrics etc.). In focus sessions, plenty of time for discussion is reserved at the end of the whole session (rather than after each talk) to discuss all talks of the topic together.
The poster presentation will be a chance for research described in poster format to be discussed.
All lecture rooms are equipped with a computer or laptop and an LCD projector.
All presenters should send a PDF file with their
presentation slides to their session chairs by July 15, 2010
(unless the presenters need their own laptop for software demonstrations).