* installing *source* package 'stan4bart' ...
** package 'stan4bart' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
using C++ compiler: 'g++.exe (GCC) 13.3.0'
using C++17
make[1]: Entering directory '/d/temp/2024_12_08_01_50_01_8405/RtmpkF86Ok/R.INSTALLf9ac2629721b/stan4bart/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppEigen/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.4/dbarts/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -I"D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include" -D_REENTRANT -DSTAN_THREADS -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bart_util.cpp -o bart_util.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppEigen/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.4/dbarts/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -I"D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include" -D_REENTRANT -DSTAN_THREADS -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.cpp -o init.o
In file included from include/stan/math/rev/fun.hpp:128,
from include/stan/math/rev.hpp:10,
from include/stan/model/gradient.hpp:6,
from include/stan/mcmc/hmc/hamiltonians/base_hamiltonian.hpp:6,
from include/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:5,
from include/stan/mcmc/hmc/nuts/diag_e_nuts.hpp:6,
from include/stan/mcmc/hmc/nuts/adapt_diag_e_nuts.hpp:6,
from interruptable_sampler.hpp:68,
from stan_sampler.hpp:18,
from init.cpp:30:
include/stan/math/rev/fun/matrix_power.hpp: In function 'stan::plain_type_t<T> stan::math::matrix_power(const T&, int)':
include/stan/math/rev/fun/matrix_power.hpp:33: note: '-Wmisleading-indentation' is disabled from this point onwards, since column-tracking was disabled due to the size of the code/headers
33 | if (M.size() == 0)
|
include/stan/math/rev/fun/matrix_power.hpp:33: note: adding '-flarge-source-files' will allow for more column-tracking support, at the expense of compilation time and memory
gcc -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppEigen/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.4/dbarts/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c misc_adaptiveRadixTree.c -o misc_adaptiveRadixTree.o
gcc -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppEigen/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.4/dbarts/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c misc_string.c -o misc_string.o
gcc -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppEigen/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.4/dbarts/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rc_bounds.c -o rc_bounds.o
gcc -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppEigen/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.4/dbarts/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rc_util.c -o rc_util.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppEigen/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.4/dbarts/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -I"D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include" -D_REENTRANT -DSTAN_THREADS -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stan_sampler.cpp -o stan_sampler.o
In file included from include/stan/math/rev/fun.hpp:128,
from include/stan/math/rev.hpp:10,
from include/stan/model/gradient.hpp:6,
from include/stan/mcmc/hmc/hamiltonians/base_hamiltonian.hpp:6,
from include/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:5,
from include/stan/mcmc/hmc/nuts/diag_e_nuts.hpp:6,
from include/stan/mcmc/hmc/nuts/adapt_diag_e_nuts.hpp:6,
from interruptable_sampler.hpp:68,
from stan_sampler.hpp:18,
from stan_sampler.cpp:1:
include/stan/math/rev/fun/matrix_power.hpp: In function 'stan::plain_type_t<T> stan::math::matrix_power(const T&, int)':
include/stan/math/rev/fun/matrix_power.hpp:33: note: '-Wmisleading-indentation' is disabled from this point onwards, since column-tracking was disabled due to the size of the code/headers
33 | if (M.size() == 0)
|
include/stan/math/rev/fun/matrix_power.hpp:33: note: adding '-flarge-source-files' will allow for more column-tracking support, at the expense of compilation time and memory
g++ -shared -s -static-libgcc -o stan4bart.dll tmp.def bart_util.o init.o misc_adaptiveRadixTree.o misc_string.o rc_bounds.o rc_util.o stan_sampler.o -LD:/RCompile/CRANpkg/lib/4.4/RcppParallel/lib/x64 -ltbb -ltbbmalloc -Wl,-rpath,D:/RCompile/CRANpkg/lib/4.4/RcppParallel/lib/x64 -Wl,--allow-multiple-definition -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.2/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_12_08_01_50_01_8405/RtmpkF86Ok/R.INSTALLf9ac2629721b/stan4bart/src'
make[1]: Entering directory '/d/temp/2024_12_08_01_50_01_8405/RtmpkF86Ok/R.INSTALLf9ac2629721b/stan4bart/src'
make[1]: Leaving directory '/d/temp/2024_12_08_01_50_01_8405/RtmpkF86Ok/R.INSTALLf9ac2629721b/stan4bart/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-stan4bart/00new/stan4bart/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'stan4bart' as stan4bart_0.0-10.zip
* DONE (stan4bart)