* installing *source* package 'spOccupancy' ...
** package 'spOccupancy' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2024_12_15_01_50_00_17345/RtmpyY5DP2/R.INSTALL12ec015d47a9/spOccupancy/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c PGOcc.cpp -o PGOcc.o
PGOcc.cpp: In function 'SEXPREC* PGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
PGOcc.cpp:573:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
573 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
PGOcc.cpp:183:10: note: 'sigmaSqPSamples_r' was declared here
183 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
PGOcc.cpp:575:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
575 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
PGOcc.cpp:184:10: note: 'alphaStarSamples_r' was declared here
184 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
PGOcc.cpp:567:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
567 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
PGOcc.cpp:192:10: note: 'sigmaSqPsiSamples_r' was declared here
192 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
PGOcc.cpp:569:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
569 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
PGOcc.cpp:193:10: note: 'betaStarSamples_r' was declared here
193 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
PGOcc.cpp:650:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
650 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples"));
| ~~~~~~^~~
PGOcc.cpp:212:12: note: 'tmp_0' was declared here
212 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c idist.cpp -o idist.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.cpp -o init.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c intMsPGOcc.cpp -o intMsPGOcc.o
intMsPGOcc.cpp: In function 'SEXPREC* intMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
intMsPGOcc.cpp:697:61: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
697 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
intMsPGOcc.cpp:238:10: note: 'sigmaSqPsiSamples_r' was declared here
238 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
intMsPGOcc.cpp:698:60: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
698 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
intMsPGOcc.cpp:239:10: note: 'betaStarSamples_r' was declared here
239 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
intMsPGOcc.cpp:780:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
780 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples"));
| ~~~~~~^~~
intMsPGOcc.cpp:164:12: note: 'tmp_0' was declared here
164 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c intPGOcc.cpp -o intPGOcc.o
intPGOcc.cpp: In function 'SEXPREC* intPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
intPGOcc.cpp:645:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
645 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
intPGOcc.cpp:212:10: note: 'sigmaSqPSamples_r' was declared here
212 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
intPGOcc.cpp:647:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
647 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
intPGOcc.cpp:213:10: note: 'alphaStarSamples_r' was declared here
213 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
intPGOcc.cpp:639:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
639 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
intPGOcc.cpp:221:10: note: 'sigmaSqPsiSamples_r' was declared here
221 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
intPGOcc.cpp:641:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
641 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
intPGOcc.cpp:222:10: note: 'betaStarSamples_r' was declared here
222 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lfJSDM.cpp -o lfJSDM.o
lfJSDM.cpp: In function 'SEXPREC* lfJSDM(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
lfJSDM.cpp:264:21: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
264 | SET_VECTOR_ELT(result_r, 8, sigmaSqPsiSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfJSDM.cpp:230:10: note: 'sigmaSqPsiSamples_r' was declared here
230 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
lfJSDM.cpp:265:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
265 | SET_VECTOR_ELT(result_r, 9, betaStarSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfJSDM.cpp:231:10: note: 'betaStarSamples_r' was declared here
231 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lfMsPGOcc.cpp -o lfMsPGOcc.o
lfMsPGOcc.cpp: In function 'SEXPREC* lfMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
lfMsPGOcc.cpp:926:59: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
926 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsPGOcc.cpp:280:10: note: 'sigmaSqPSamples_r' was declared here
280 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsPGOcc.cpp:927:61: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
927 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsPGOcc.cpp:281:10: note: 'alphaStarSamples_r' was declared here
281 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsPGOcc.cpp:930:61: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
930 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
lfMsPGOcc.cpp:289:10: note: 'sigmaSqPsiSamples_r' was declared here
289 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
lfMsPGOcc.cpp:931:60: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
931 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsPGOcc.cpp:290:10: note: 'betaStarSamples_r' was declared here
290 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsPGOcc.cpp:1023:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1023 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples"));
| ~~~~~~^~~
lfMsPGOcc.cpp:166:12: note: 'tmp_0' was declared here
166 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mkSpCov.cpp -o mkSpCov.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c msPGOcc.cpp -o msPGOcc.o
msPGOcc.cpp: In function 'SEXPREC* msPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
msPGOcc.cpp:718:59: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
718 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msPGOcc.cpp:241:10: note: 'sigmaSqPSamples_r' was declared here
241 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
msPGOcc.cpp:719:61: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
719 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msPGOcc.cpp:242:10: note: 'alphaStarSamples_r' was declared here
242 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
msPGOcc.cpp:722:61: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
722 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
msPGOcc.cpp:250:10: note: 'sigmaSqPsiSamples_r' was declared here
250 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
msPGOcc.cpp:723:60: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
723 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msPGOcc.cpp:251:10: note: 'betaStarSamples_r' was declared here
251 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
msPGOcc.cpp:804:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
804 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples"));
| ~~~~~~^~~
msPGOcc.cpp:156:12: note: 'tmp_0' was declared here
156 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nn.cpp -o nn.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c postHocLM.cpp -o postHocLM.o
postHocLM.cpp: In function 'SEXPREC* postHocLM(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
postHocLM.cpp:292:26: warning: 'sigmaSqSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
292 | &REAL(sigmaSqSamples_r)[s*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~
postHocLM.cpp:114:10: note: 'sigmaSqSamples_r' was declared here
114 | SEXP sigmaSqSamples_r;
| ^~~~~~~~~~~~~~~~
postHocLM.cpp:294:26: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
294 | &REAL(betaStarSamples_r)[s*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
postHocLM.cpp:115:10: note: 'betaStarSamples_r' was declared here
115 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rpg.cpp -o rpg.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sfJSDMNNGP.cpp -o sfJSDMNNGP.o
sfJSDMNNGP.cpp: In function 'SEXPREC* sfJSDMNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfJSDMNNGP.cpp:978:59: warning: 'betaCommSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
978 | F77_NAME(dcopy)(&pOcc, betaComm, &inc, &REAL(betaCommSamples_r)[sPost*pOcc], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:287:10: note: 'betaCommSamples_r' was declared here
287 | SEXP betaCommSamples_r;
| ^~~~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:981:60: warning: 'tauSqBetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
981 | F77_NAME(dcopy)(&pOcc, tauSqBeta, &inc, &REAL(tauSqBetaSamples_r)[sPost*pOcc], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:292:10: note: 'tauSqBetaSamples_r' was declared here
292 | SEXP tauSqBetaSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:984:56: warning: 'betaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
984 | F77_NAME(dcopy)(&pOccN, beta, &inc, &REAL(betaSamples_r)[sPost*pOccN], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:298:10: note: 'betaSamples_r' was declared here
298 | SEXP betaSamples_r;
| ^~~~~~~~~~~~~
sfJSDMNNGP.cpp:993:50: warning: 'zSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
993 | F77_NAME(dcopy)(&JN, z, &inc, &REAL(zSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~
sfJSDMNNGP.cpp:305:10: note: 'zSamples_r' was declared here
305 | SEXP zSamples_r;
| ^~~~~~~~~~
sfJSDMNNGP.cpp:990:52: warning: 'psiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
990 | F77_NAME(dcopy)(&JN, psi, &inc, &REAL(psiSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~~
sfJSDMNNGP.cpp:310:10: note: 'psiSamples_r' was declared here
310 | SEXP psiSamples_r;
| ^~~~~~~~~~~~
sfJSDMNNGP.cpp:987:55: warning: 'lambdaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
987 | F77_NAME(dcopy)(&Nq, lambda, &inc, &REAL(lambdaSamples_r)[sPost*Nq], &inc);
| ~~~~^~~~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:316:10: note: 'lambdaSamples_r' was declared here
316 | SEXP lambdaSamples_r;
| ^~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:996:50: warning: 'wSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
996 | F77_NAME(dcopy)(&Jq, w, &inc, &REAL(wSamples_r)[sPost*Jq], &inc);
| ~~~~^~~~~~~~~~~~
sfJSDMNNGP.cpp:321:10: note: 'wSamples_r' was declared here
321 | SEXP wSamples_r;
| ^~~~~~~~~~
sfJSDMNNGP.cpp:1007:65: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1007 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:327:10: note: 'sigmaSqPsiSamples_r' was declared here
327 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:1010:64: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1010 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:328:10: note: 'betaStarSamples_r' was declared here
328 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:1014:54: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1014 | F77_NAME(dcopy)(&JN, yWAIC, &inc, &REAL(likeSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:340:10: note: 'likeSamples_r' was declared here
340 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
sfJSDMNNGP.cpp:1002:79: warning: 'thetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1002 | F77_NAME(dcopy)(&nThetaqSave, &theta[phiIndx * q], &inc, &REAL(thetaSamples_r)[sPost*nThetaqSave], &inc);
| ~~~~^~~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:429:10: note: 'thetaSamples_r' was declared here
429 | SEXP thetaSamples_r;
| ^~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sfMsPGOccNNGP.cpp -o sfMsPGOccNNGP.o
sfMsPGOccNNGP.cpp: In function 'SEXPREC* sfMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfMsPGOccNNGP.cpp:1251:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1251 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsPGOccNNGP.cpp:367:10: note: 'sigmaSqPSamples_r' was declared here
367 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsPGOccNNGP.cpp:1252:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1252 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsPGOccNNGP.cpp:368:10: note: 'alphaStarSamples_r' was declared here
368 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsPGOccNNGP.cpp:1255:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1255 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
sfMsPGOccNNGP.cpp:376:10: note: 'sigmaSqPsiSamples_r' was declared here
376 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
sfMsPGOccNNGP.cpp:1256:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1256 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsPGOccNNGP.cpp:377:10: note: 'betaStarSamples_r' was declared here
377 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsPGOccNNGP.cpp:1374:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1374 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsPGOccNNGP.cpp:242:12: note: 'tmp_0' was declared here
242 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sfMsPGOccNNGPPredict.cpp -o sfMsPGOccNNGPPredict.o
sfMsPGOccNNGPPredict.cpp: In function 'SEXPREC* sfMsPGOccNNGPPredict(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfMsPGOccNNGPPredict.cpp:144:39: warning: 'nuIndx' may be used uninitialized [-Wmaybe-uninitialized]
144 | if(theta[s*nThetaq + nuIndx * q + ll] > nuMax[ll]){
| ~~~~~~~^~~
sfMsPGOccNNGPPredict.cpp:109:26: note: 'nuIndx' was declared here
109 | int nTheta, phiIndx, nuIndx, sigmaSqIndx;
| ^~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spIntPGOcc.cpp -o spIntPGOcc.o
spIntPGOcc.cpp: In function 'SEXPREC* spIntPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spIntPGOcc.cpp:892:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
892 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spIntPGOcc.cpp:242:10: note: 'sigmaSqPSamples_r' was declared here
242 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spIntPGOcc.cpp:894:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
894 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spIntPGOcc.cpp:243:10: note: 'alphaStarSamples_r' was declared here
243 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spIntPGOcc.cpp:886:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
886 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
spIntPGOcc.cpp:251:10: note: 'sigmaSqPsiSamples_r' was declared here
251 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
spIntPGOcc.cpp:888:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
888 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spIntPGOcc.cpp:252:10: note: 'betaStarSamples_r' was declared here
252 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spIntPGOccNNGP.cpp -o spIntPGOccNNGP.o
spIntPGOccNNGP.cpp: In function 'SEXPREC* spIntPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spIntPGOccNNGP.cpp:938:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
938 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spIntPGOccNNGP.cpp:291:10: note: 'sigmaSqPSamples_r' was declared here
291 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spIntPGOccNNGP.cpp:940:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
940 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spIntPGOccNNGP.cpp:292:10: note: 'alphaStarSamples_r' was declared here
292 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spIntPGOccNNGP.cpp:932:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
932 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
spIntPGOccNNGP.cpp:300:10: note: 'sigmaSqPsiSamples_r' was declared here
300 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
spIntPGOccNNGP.cpp:934:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
934 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spIntPGOccNNGP.cpp:301:10: note: 'betaStarSamples_r' was declared here
301 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spIntPGOccNNGP.cpp:447:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
447 | double logDet;
| ^~~~~~
spIntPGOccNNGP.cpp:455:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized]
455 | double a, v, b, e, mu, var, aij;
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spMsPGOcc.cpp -o spMsPGOcc.o
spMsPGOcc.cpp: In function 'SEXPREC* spMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spMsPGOcc.cpp:1041:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1041 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spMsPGOcc.cpp:291:10: note: 'sigmaSqPSamples_r' was declared here
291 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spMsPGOcc.cpp:1043:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1043 | &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spMsPGOcc.cpp:292:10: note: 'alphaStarSamples_r' was declared here
292 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spMsPGOcc.cpp:1047:36: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1047 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
spMsPGOcc.cpp:300:10: note: 'sigmaSqPsiSamples_r' was declared here
300 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
spMsPGOcc.cpp:1049:36: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1049 | &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spMsPGOcc.cpp:301:10: note: 'betaStarSamples_r' was declared here
301 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spMsPGOcc.cpp:1168:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1168 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spMsPGOcc.cpp:184:12: note: 'tmp_0' was declared here
184 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spMsPGOccNNGP.cpp -o spMsPGOccNNGP.o
spMsPGOccNNGP.cpp: In function 'SEXPREC* spMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spMsPGOccNNGP.cpp:1079:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1079 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spMsPGOccNNGP.cpp:338:10: note: 'sigmaSqPSamples_r' was declared here
338 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spMsPGOccNNGP.cpp:1081:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1081 | &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spMsPGOccNNGP.cpp:339:10: note: 'alphaStarSamples_r' was declared here
339 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spMsPGOccNNGP.cpp:1085:36: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1085 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
spMsPGOccNNGP.cpp:347:10: note: 'sigmaSqPsiSamples_r' was declared here
347 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
spMsPGOccNNGP.cpp:1087:36: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1087 | &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spMsPGOccNNGP.cpp:348:10: note: 'betaStarSamples_r' was declared here
348 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spMsPGOccNNGP.cpp:498:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
498 | double logDet;
| ^~~~~~
spMsPGOccNNGP.cpp:467:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized]
467 | double a, v, b, e, mu, var, aij;
| ^
spMsPGOccNNGP.cpp:1207:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1207 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spMsPGOccNNGP.cpp:233:12: note: 'tmp_0' was declared here
233 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spMsPGOccNNGPPredict.cpp -o spMsPGOccNNGPPredict.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spMsPGOccPredict.cpp -o spMsPGOccPredict.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spPGOcc.cpp -o spPGOcc.o
spPGOcc.cpp: In function 'SEXPREC* spPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spPGOcc.cpp:807:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
807 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spPGOcc.cpp:208:10: note: 'sigmaSqPSamples_r' was declared here
208 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spPGOcc.cpp:809:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
809 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spPGOcc.cpp:209:10: note: 'alphaStarSamples_r' was declared here
209 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spPGOcc.cpp:801:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
801 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
spPGOcc.cpp:217:10: note: 'sigmaSqPsiSamples_r' was declared here
217 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
spPGOcc.cpp:803:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
803 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spPGOcc.cpp:218:10: note: 'betaStarSamples_r' was declared here
218 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spPGOcc.cpp:918:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
918 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spPGOcc.cpp:238:12: note: 'tmp_0' was declared here
238 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spPGOccNNGP.cpp -o spPGOccNNGP.o
spPGOccNNGP.cpp: In function 'SEXPREC* spPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spPGOccNNGP.cpp:887:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
887 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spPGOccNNGP.cpp:262:10: note: 'sigmaSqPSamples_r' was declared here
262 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spPGOccNNGP.cpp:889:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
889 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spPGOccNNGP.cpp:263:10: note: 'alphaStarSamples_r' was declared here
263 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spPGOccNNGP.cpp:881:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
881 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
spPGOccNNGP.cpp:271:10: note: 'sigmaSqPsiSamples_r' was declared here
271 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
spPGOccNNGP.cpp:883:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
883 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spPGOccNNGP.cpp:272:10: note: 'betaStarSamples_r' was declared here
272 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spPGOccNNGP.cpp:703:9: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized]
703 | #pragma omp parallel for private (e, i, b) reduction(+:a)
| ^~~
spPGOccNNGP.cpp:400:12: note: 'a' was declared here
400 | double a, v, b, e, mu, var, aij;
| ^
spPGOccNNGP.cpp:998:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
998 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spPGOccNNGP.cpp:292:12: note: 'tmp_0' was declared here
292 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spPGOccNNGPPredict.cpp -o spPGOccNNGPPredict.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spPGOccPredict.cpp -o spPGOccPredict.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stIntPGOccNNGP.cpp -o stIntPGOccNNGP.o
stIntPGOccNNGP.cpp: In function 'SEXPREC* stIntPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
stIntPGOccNNGP.cpp:1285:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1285 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
stIntPGOccNNGP.cpp:310:10: note: 'etaSamples_r' was declared here
310 | SEXP etaSamples_r;
| ^~~~~~~~~~~~
stIntPGOccNNGP.cpp:1178:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1178 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
stIntPGOccNNGP.cpp:319:10: note: 'sigmaSqPSamples_r' was declared here
319 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
stIntPGOccNNGP.cpp:1180:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1180 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
stIntPGOccNNGP.cpp:320:10: note: 'alphaStarSamples_r' was declared here
320 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
stIntPGOccNNGP.cpp:1172:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1172 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
stIntPGOccNNGP.cpp:328:10: note: 'sigmaSqPsiSamples_r' was declared here
328 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
stIntPGOccNNGP.cpp:1174:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1174 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
stIntPGOccNNGP.cpp:329:10: note: 'betaStarSamples_r' was declared here
329 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
stIntPGOccNNGP.cpp:528:13: warning: 'sigmaSqTIndx' may be used uninitialized [-Wmaybe-uninitialized]
528 | theta[sigmaSqTIndx] = REAL(ar1Vals_r)[5];
| ^~~~~~~~~~~~
stIntPGOccNNGP.cpp:474:47: note: 'sigmaSqTIndx' was declared here
474 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx;
| ^~~~~~~~~~~~
stIntPGOccNNGP.cpp:529:13: warning: 'rhoIndx' may be used uninitialized [-Wmaybe-uninitialized]
529 | theta[rhoIndx] = REAL(ar1Vals_r)[4];
| ^~~~~~~
stIntPGOccNNGP.cpp:474:61: note: 'rhoIndx' was declared here
474 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx;
| ^~~~~~~
stIntPGOccNNGP.cpp:560:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
560 | double logDet;
| ^~~~~~
stIntPGOccNNGP.cpp:492:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized]
492 | double a, v, b, e, mu, var, aij;
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stMsPGOccNNGP.cpp -o stMsPGOccNNGP.o
stMsPGOccNNGP.cpp: In function 'SEXPREC* stMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
stMsPGOccNNGP.cpp:1510:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1510 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:393:10: note: 'sigmaSqPSamples_r' was declared here
393 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:1511:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1511 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:394:10: note: 'alphaStarSamples_r' was declared here
394 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:1514:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1514 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:402:10: note: 'sigmaSqPsiSamples_r' was declared here
402 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:1515:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1515 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:403:10: note: 'betaStarSamples_r' was declared here
403 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:1640:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1640 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:417:10: note: 'etaSamples_r' was declared here
417 | SEXP etaSamples_r;
| ^~~~~~~~~~~~
stMsPGOccNNGP.cpp:1641:21: warning: 'ar1ThetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1641 | SET_VECTOR_ELT(result_r, ar1Ind + 1, ar1ThetaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:418:10: note: 'ar1ThetaSamples_r' was declared here
418 | SEXP ar1ThetaSamples_r;
| ^~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:1664:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1664 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:257:12: note: 'tmp_0' was declared here
257 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stPGOccNNGP.cpp -o stPGOccNNGP.o
stPGOccNNGP.cpp: In function 'SEXPREC* stPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
stPGOccNNGP.cpp:1224:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1224 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp:291:10: note: 'etaSamples_r' was declared here
291 | SEXP etaSamples_r;
| ^~~~~~~~~~~~
stPGOccNNGP.cpp:1118:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1118 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp:300:10: note: 'sigmaSqPSamples_r' was declared here
300 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp:1120:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1120 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp:301:10: note: 'alphaStarSamples_r' was declared here
301 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp:1112:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1112 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp:309:10: note: 'sigmaSqPsiSamples_r' was declared here
309 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp:1114:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1114 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp:310:10: note: 'betaStarSamples_r' was declared here
310 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp:481:13: warning: 'sigmaSqTIndx' may be used uninitialized [-Wmaybe-uninitialized]
481 | theta[sigmaSqTIndx] = REAL(ar1Vals_r)[5];
| ^~~~~~~~~~~~
stPGOccNNGP.cpp:427:47: note: 'sigmaSqTIndx' was declared here
427 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx;
| ^~~~~~~~~~~~
stPGOccNNGP.cpp:482:13: warning: 'rhoIndx' may be used uninitialized [-Wmaybe-uninitialized]
482 | theta[rhoIndx] = REAL(ar1Vals_r)[4];
| ^~~~~~~
stPGOccNNGP.cpp:427:61: note: 'rhoIndx' was declared here
427 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx;
| ^~~~~~~
stPGOccNNGP.cpp:513:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
513 | double logDet;
| ^~~~~~
stPGOccNNGP.cpp:445:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized]
445 | double a, v, b, e, mu, var, aij;
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stPGOccNNGPPredict.cpp -o stPGOccNNGPPredict.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcMsPGOccNNGP.cpp -o svcMsPGOccNNGP.o
svcMsPGOccNNGP.cpp: In function 'SEXPREC* svcMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcMsPGOccNNGP.cpp:1327:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1327 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcMsPGOccNNGP.cpp:373:10: note: 'sigmaSqPSamples_r' was declared here
373 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
svcMsPGOccNNGP.cpp:1328:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1328 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcMsPGOccNNGP.cpp:374:10: note: 'alphaStarSamples_r' was declared here
374 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcMsPGOccNNGP.cpp:1331:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1331 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
svcMsPGOccNNGP.cpp:382:10: note: 'sigmaSqPsiSamples_r' was declared here
382 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
svcMsPGOccNNGP.cpp:1332:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1332 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcMsPGOccNNGP.cpp:383:10: note: 'betaStarSamples_r' was declared here
383 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
svcMsPGOccNNGP.cpp:1451:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1451 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcMsPGOccNNGP.cpp:249:12: note: 'tmp_0' was declared here
249 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcMsPGOccNNGPPredict.cpp -o svcMsPGOccNNGPPredict.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcPGBinomNNGP.cpp -o svcPGBinomNNGP.o
svcPGBinomNNGP.cpp: In function 'SEXPREC* svcPGBinomNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcPGBinomNNGP.cpp:730:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
730 | &REAL(sigmaSqPsiSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
svcPGBinomNNGP.cpp:240:10: note: 'sigmaSqPsiSamples_r' was declared here
240 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
svcPGBinomNNGP.cpp:732:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
732 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcPGBinomNNGP.cpp:241:10: note: 'betaStarSamples_r' was declared here
241 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
svcPGBinomNNGP.cpp:582:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
582 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet)
| ^~~
svcPGBinomNNGP.cpp:324:12: note: 'logDet' was declared here
324 | double logDet;
| ^~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcPGOccNNGP.cpp -o svcPGOccNNGP.o
svcPGOccNNGP.cpp: In function 'SEXPREC* svcPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcPGOccNNGP.cpp:982:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
982 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcPGOccNNGP.cpp:278:10: note: 'sigmaSqPSamples_r' was declared here
278 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
svcPGOccNNGP.cpp:984:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
984 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcPGOccNNGP.cpp:279:10: note: 'alphaStarSamples_r' was declared here
279 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcPGOccNNGP.cpp:976:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
976 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
svcPGOccNNGP.cpp:287:10: note: 'sigmaSqPsiSamples_r' was declared here
287 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
svcPGOccNNGP.cpp:978:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
978 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcPGOccNNGP.cpp:288:10: note: 'betaStarSamples_r' was declared here
288 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
svcPGOccNNGP.cpp:794:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
794 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet)
| ^~~
svcPGOccNNGP.cpp:408:12: note: 'logDet' was declared here
408 | double logDet;
| ^~~~~~
svcPGOccNNGP.cpp:1096:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1096 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcPGOccNNGP.cpp:308:12: note: 'tmp_0' was declared here
308 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcPGOccNNGPPredict.cpp -o svcPGOccNNGPPredict.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcTIntPGOccNNGP.cpp -o svcTIntPGOccNNGP.o
svcTIntPGOccNNGP.cpp: In function 'SEXPREC* svcTIntPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcTIntPGOccNNGP.cpp:1373:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1373 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:318:10: note: 'etaSamples_r' was declared here
318 | SEXP etaSamples_r;
| ^~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:1249:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1249 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:327:10: note: 'sigmaSqPSamples_r' was declared here
327 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:1251:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1251 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:328:10: note: 'alphaStarSamples_r' was declared here
328 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:1243:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1243 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:336:10: note: 'sigmaSqPsiSamples_r' was declared here
336 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:1245:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1245 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:337:10: note: 'betaStarSamples_r' was declared here
337 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:565:13: warning: 'sigmaSqTIndx' may be used uninitialized [-Wmaybe-uninitialized]
565 | theta[sigmaSqTIndx] = REAL(ar1Vals_r)[5];
| ^~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:486:47: note: 'sigmaSqTIndx' was declared here
486 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx;
| ^~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:566:13: warning: 'rhoIndx' may be used uninitialized [-Wmaybe-uninitialized]
566 | theta[rhoIndx] = REAL(ar1Vals_r)[4];
| ^~~~~~~
svcTIntPGOccNNGP.cpp:486:61: note: 'rhoIndx' was declared here
486 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx;
| ^~~~~~~
svcTIntPGOccNNGP.cpp:935:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
935 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet)
| ^~~
svcTIntPGOccNNGP.cpp:504:12: note: 'logDet' was declared here
504 | double logDet;
| ^~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcTMsPGOccNNGP.cpp -o svcTMsPGOccNNGP.o
svcTMsPGOccNNGP.cpp: In function 'SEXPREC* svcTMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcTMsPGOccNNGP.cpp:1632:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1632 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:411:10: note: 'sigmaSqPSamples_r' was declared here
411 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:1633:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1633 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:412:10: note: 'alphaStarSamples_r' was declared here
412 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:1636:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1636 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:420:10: note: 'sigmaSqPsiSamples_r' was declared here
420 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:1637:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1637 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:421:10: note: 'betaStarSamples_r' was declared here
421 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:1766:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1766 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:435:10: note: 'etaSamples_r' was declared here
435 | SEXP etaSamples_r;
| ^~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:1767:21: warning: 'ar1ThetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1767 | SET_VECTOR_ELT(result_r, ar1Ind + 1, ar1ThetaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:436:10: note: 'ar1ThetaSamples_r' was declared here
436 | SEXP ar1ThetaSamples_r;
| ^~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:1790:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1790 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:271:12: note: 'tmp_0' was declared here
271 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcTMsPGOccNNGPPredict.cpp -o svcTMsPGOccNNGPPredict.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcTPGBinomNNGP.cpp -o svcTPGBinomNNGP.o
svcTPGBinomNNGP.cpp: In function 'SEXPREC* svcTPGBinomNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcTPGBinomNNGP.cpp:952:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
952 | &REAL(sigmaSqPsiSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
svcTPGBinomNNGP.cpp:261:10: note: 'sigmaSqPsiSamples_r' was declared here
261 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
svcTPGBinomNNGP.cpp:954:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
954 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcTPGBinomNNGP.cpp:262:10: note: 'betaStarSamples_r' was declared here
262 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
svcTPGBinomNNGP.cpp:1050:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1050 | SET_VECTOR_ELT(result_r, tmp_0, etaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcTPGBinomNNGP.cpp:274:10: note: 'etaSamples_r' was declared here
274 | SEXP etaSamples_r;
| ^~~~~~~~~~~~
svcTPGBinomNNGP.cpp:681:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
681 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet)
| ^~~
svcTPGBinomNNGP.cpp:369:12: note: 'logDet' was declared here
369 | double logDet;
| ^~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcTPGOccNNGP.cpp -o svcTPGOccNNGP.o
svcTPGOccNNGP.cpp: In function 'SEXPREC* svcTPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcTPGOccNNGP.cpp:1330:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1330 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcTPGOccNNGP.cpp:300:10: note: 'etaSamples_r' was declared here
300 | SEXP etaSamples_r;
| ^~~~~~~~~~~~
svcTPGOccNNGP.cpp:1205:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1205 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcTPGOccNNGP.cpp:309:10: note: 'sigmaSqPSamples_r' was declared here
309 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
svcTPGOccNNGP.cpp:1207:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1207 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcTPGOccNNGP.cpp:310:10: note: 'alphaStarSamples_r' was declared here
310 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcTPGOccNNGP.cpp:1199:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1199 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
svcTPGOccNNGP.cpp:318:10: note: 'sigmaSqPsiSamples_r' was declared here
318 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
svcTPGOccNNGP.cpp:1201:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1201 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcTPGOccNNGP.cpp:319:10: note: 'betaStarSamples_r' was declared here
319 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
svcTPGOccNNGP.cpp:518:13: warning: 'sigmaSqTIndx' may be used uninitialized [-Wmaybe-uninitialized]
518 | theta[sigmaSqTIndx] = REAL(ar1Vals_r)[5];
| ^~~~~~~~~~~~
svcTPGOccNNGP.cpp:439:47: note: 'sigmaSqTIndx' was declared here
439 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx;
| ^~~~~~~~~~~~
svcTPGOccNNGP.cpp:519:13: warning: 'rhoIndx' may be used uninitialized [-Wmaybe-uninitialized]
519 | theta[rhoIndx] = REAL(ar1Vals_r)[4];
| ^~~~~~~
svcTPGOccNNGP.cpp:439:61: note: 'rhoIndx' was declared here
439 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx;
| ^~~~~~~
svcTPGOccNNGP.cpp:894:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
894 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet)
| ^~~
svcTPGOccNNGP.cpp:457:12: note: 'logDet' was declared here
457 | double logDet;
| ^~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcTPGOccNNGPPredict.cpp -o svcTPGOccNNGPPredict.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tIntPGOcc.cpp -o tIntPGOcc.o
tIntPGOcc.cpp: In function 'SEXPREC* tIntPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
tIntPGOcc.cpp:992:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
992 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tIntPGOcc.cpp:232:10: note: 'etaSamples_r' was declared here
232 | SEXP etaSamples_r;
| ^~~~~~~~~~~~
tIntPGOcc.cpp:896:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
896 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
tIntPGOcc.cpp:241:10: note: 'sigmaSqPSamples_r' was declared here
241 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
tIntPGOcc.cpp:898:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
898 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
tIntPGOcc.cpp:242:10: note: 'alphaStarSamples_r' was declared here
242 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
tIntPGOcc.cpp:890:36: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
890 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
tIntPGOcc.cpp:250:10: note: 'sigmaSqPsiSamples_r' was declared here
250 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
tIntPGOcc.cpp:892:36: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
892 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
tIntPGOcc.cpp:251:10: note: 'betaStarSamples_r' was declared here
251 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
tIntPGOcc.cpp:993:21: warning: 'thetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
993 | SET_VECTOR_ELT(result_r, ar1Ind + 1, thetaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tIntPGOcc.cpp:405:10: note: 'thetaSamples_r' was declared here
405 | SEXP thetaSamples_r;
| ^~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tMsPGOcc.cpp -o tMsPGOcc.o
tMsPGOcc.cpp: In function 'SEXPREC* tMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
tMsPGOcc.cpp:1146:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1146 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tMsPGOcc.cpp:278:10: note: 'etaSamples_r' was declared here
278 | SEXP etaSamples_r;
| ^~~~~~~~~~~~
tMsPGOcc.cpp:1147:21: warning: 'thetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1147 | SET_VECTOR_ELT(result_r, ar1Ind + 1, thetaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tMsPGOcc.cpp:279:10: note: 'thetaSamples_r' was declared here
279 | SEXP thetaSamples_r;
| ^~~~~~~~~~~~~~
tMsPGOcc.cpp:1033:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1033 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
tMsPGOcc.cpp:302:10: note: 'sigmaSqPSamples_r' was declared here
302 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
tMsPGOcc.cpp:1034:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1034 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
tMsPGOcc.cpp:303:10: note: 'alphaStarSamples_r' was declared here
303 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
tMsPGOcc.cpp:1037:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1037 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
tMsPGOcc.cpp:311:10: note: 'sigmaSqPsiSamples_r' was declared here
311 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
tMsPGOcc.cpp:1038:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1038 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
tMsPGOcc.cpp:312:10: note: 'betaStarSamples_r' was declared here
312 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
tMsPGOcc.cpp:1168:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1168 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples"));
| ~~~~~~^~~
tMsPGOcc.cpp:183:12: note: 'tmp_0' was declared here
183 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tPGOcc.cpp -o tPGOcc.o
tPGOcc.cpp: In function 'SEXPREC* tPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
tPGOcc.cpp:912:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
912 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tPGOcc.cpp:207:10: note: 'etaSamples_r' was declared here
207 | SEXP etaSamples_r;
| ^~~~~~~~~~~~
tPGOcc.cpp:819:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
819 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
tPGOcc.cpp:216:10: note: 'sigmaSqPSamples_r' was declared here
216 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
tPGOcc.cpp:821:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
821 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
tPGOcc.cpp:217:10: note: 'alphaStarSamples_r' was declared here
217 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
tPGOcc.cpp:813:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
813 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
tPGOcc.cpp:225:10: note: 'sigmaSqPsiSamples_r' was declared here
225 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
tPGOcc.cpp:815:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
815 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
tPGOcc.cpp:226:10: note: 'betaStarSamples_r' was declared here
226 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
tPGOcc.cpp:913:21: warning: 'thetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
913 | SET_VECTOR_ELT(result_r, ar1Ind + 1, thetaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tPGOcc.cpp:350:10: note: 'thetaSamples_r' was declared here
350 | SEXP thetaSamples_r;
| ^~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c util.cpp -o util.o
g++ -std=gnu++17 -shared -s -static-libgcc -o spOccupancy.dll tmp.def PGOcc.o idist.o init.o intMsPGOcc.o intPGOcc.o lfJSDM.o lfMsPGOcc.o mkSpCov.o msPGOcc.o nn.o postHocLM.o rpg.o sfJSDMNNGP.o sfMsPGOccNNGP.o sfMsPGOccNNGPPredict.o spIntPGOcc.o spIntPGOccNNGP.o spMsPGOcc.o spMsPGOccNNGP.o spMsPGOccNNGPPredict.o spMsPGOccPredict.o spPGOcc.o spPGOccNNGP.o spPGOccNNGPPredict.o spPGOccPredict.o stIntPGOccNNGP.o stMsPGOccNNGP.o stPGOccNNGP.o stPGOccNNGPPredict.o svcMsPGOccNNGP.o svcMsPGOccNNGPPredict.o svcPGBinomNNGP.o svcPGOccNNGP.o svcPGOccNNGPPredict.o svcTIntPGOccNNGP.o svcTMsPGOccNNGP.o svcTMsPGOccNNGPPredict.o svcTPGBinomNNGP.o svcTPGOccNNGP.o svcTPGOccNNGPPredict.o tIntPGOcc.o tMsPGOcc.o tPGOcc.o util.o -LD:/RCompile/recent/R-4.4.2/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.2/bin/x64 -lRblas -lgfortran -lm -lquadmath -fopenmp -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.2/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_12_15_01_50_00_17345/RtmpyY5DP2/R.INSTALL12ec015d47a9/spOccupancy/src'
make[1]: Entering directory '/d/temp/2024_12_15_01_50_00_17345/RtmpyY5DP2/R.INSTALL12ec015d47a9/spOccupancy/src'
make[1]: Leaving directory '/d/temp/2024_12_15_01_50_00_17345/RtmpyY5DP2/R.INSTALL12ec015d47a9/spOccupancy/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-spOccupancy/00new/spOccupancy/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'spOccupancy' as spOccupancy_0.8.0.zip
* DONE (spOccupancy)