Install log for 'scellpam'

* installing *source* package 'scellpam' ...
** package 'scellpam' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2024_12_08_01_50_01_8405/Rtmp40l1Tz/R.INSTALL251045c1561da/scellpam/src'
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c biodatatojmat.cpp -o biodatatojmat.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c buildresults.cpp -o buildresults.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c csvtojmat.cpp -o csvtojmat.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c debugpar.cpp -o debugpar.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c diftimehelper.cpp -o diftimehelper.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c dissimmat.cpp -o dissimmat.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c dissimmat_full.cpp -o dissimmat_full.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c dissimmat_sparse.cpp -o dissimmat_sparse.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c fastpam.cpp -o fastpam.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c filternames.cpp -o filternames.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c filtersil.cpp -o filtersil.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c fullmatrix.cpp -o fullmatrix.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c jmatrix.cpp -o jmatrix.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c jmatrixaux.cpp -o jmatrixaux.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mainfastpam.cpp -o mainfastpam.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c matgetcols.cpp -o matgetcols.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c matgetdiag.cpp -o matgetdiag.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c matgetrows.cpp -o matgetrows.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c matinfo.cpp -o matinfo.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c matmetadata.cpp -o matmetadata.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c matwrite.cpp -o matwrite.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c memhelper.cpp -o memhelper.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c silhouette.cpp -o silhouette.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c sparsematrix.cpp -o sparsematrix.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c symmetricmatrix.cpp -o symmetricmatrix.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c threadhelper.cpp -o threadhelper.o
g++ -std=gnu++17 -shared -s -static-libgcc -o scellpam.dll tmp.def RcppExports.o biodatatojmat.o buildresults.o csvtojmat.o debugpar.o diftimehelper.o dissimmat.o dissimmat_full.o dissimmat_sparse.o fastpam.o filternames.o filtersil.o fullmatrix.o jmatrix.o jmatrixaux.o mainfastpam.o matgetcols.o matgetdiag.o matgetrows.o matinfo.o matmetadata.o matwrite.o memhelper.o silhouette.o sparsematrix.o symmetricmatrix.o threadhelper.o -lpthread -O2 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.2/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_12_08_01_50_01_8405/Rtmp40l1Tz/R.INSTALL251045c1561da/scellpam/src'
make[1]: Entering directory '/d/temp/2024_12_08_01_50_01_8405/Rtmp40l1Tz/R.INSTALL251045c1561da/scellpam/src'
make[1]: Leaving directory '/d/temp/2024_12_08_01_50_01_8405/Rtmp40l1Tz/R.INSTALL251045c1561da/scellpam/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-scellpam/00new/scellpam/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'scellpam' as scellpam_1.4.6.2.zip
* DONE (scellpam)