- using R version 4.4.2 (2024-10-31 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'read.gt3x/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'read.gt3x' version '1.2.0'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'read.gt3x' can be installed ... OK
See the install log for details.
- used C++ compiler: 'g++.exe (GCC) 13.3.0'
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s] OK
- checking whether the package can be unloaded cleanly ... [0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s] OK
- checking whether the namespace can be unloaded cleanly ... [1s] OK
- checking loading without being on the library search path ... [0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [3s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in shell scripts ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compiled code ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [2s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [93s] ERROR
Running 'testthat.R' [93s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(read.gt3x)
>
> test_check("read.gt3x")
trying URL 'https://github.com/THLfi/read.gt3x/releases/download/v1.0/EE_left_29.5.2017-05-30.gt3x.zip'
Content type 'application/octet-stream' length 126907117 bytes (121.0 MB)
==================================================
downloaded 121.0 MB
trying URL 'https://github.com/THLfi/read.gt3x/releases/download/v1.0/SS_left_19.5.2017-05-22.gt3x.zip'
Content type 'application/octet-stream' length 52409857 bytes (50.0 MB)
==================================================
downloaded 50.0 MB
trying URL 'https://ndownloader.figshare.com/files/21855801'
Content type 'application/gzip' length 6650300 bytes (6.3 MB)
=================================================
downloaded 6.3 MB
trying URL 'https://ndownloader.figshare.com/files/25557302'
Content type 'application/gzip' length 6094528 bytes (5.8 MB)
==================================================
downloaded 5.8 MB
GT3X information
$ Serial Number :"MRA1DXXXXXXXX"
$ Device Type :"ActiSleepPlus"
$ Firmware :"2.4.0"
$ Battery Voltage :"4.2"
$ Sample Rate :30
$ Start Date : POSIXct, format: "2012-04-04 13:29:00"
$ Stop Date : POSIXct, format: "2012-04-05 13:29:00"
$ Download Date : POSIXct, format: "2012-04-05 16:19:16"
$ Board Revision :"3"
$ Subject Name :"ActiSleepPlus"
$ Sex :"Male"
$ Height :"172.72"
$ Mass :"69.8532250385783"
$ Age :"42"
$ Race :"White / Caucasian"
$ Limb :"Wrist"
$ Side :"Right"
$ Dominance :"Dominant"
$ DateOfBirth :"621132192000000000"
$ Serial Prefix :"MRA"
$ Last Sample Time : 'POSIXct' num(0)
- attr(*, "tzone")= chr "GMT"
$ Acceleration Scale:341
$ Acceleration Min :"-6.0"
$ Acceleration Max :"6.0"
Sample size: 2592000
Scaling...
Lux Sample size: 2592000
Sampling Rate: 30Hz
Firmware Version: 2.4.0
Serial Number Prefix: MRA
X Y Z
[1,] -0.935 -0.320 -0.141
[2,] -0.974 -0.270 -0.220
[3,] -0.891 -0.279 -0.167
[4,] -0.862 -0.249 -0.196
[5,] -0.877 -0.205 -0.393
[6,] -0.534 -0.246 -0.595
Sampling Rate: 30Hz
Firmware Version: 2.4.0
Serial Number Prefix: MRA
time X Y Z
1 2012-04-04 13:29:00 -0.935 -0.320 -0.141
2 2012-04-04 13:29:00 -0.974 -0.270 -0.220
3 2012-04-04 13:29:00 -0.891 -0.279 -0.167
4 2012-04-04 13:29:00 -0.862 -0.249 -0.196
5 2012-04-04 13:29:00 -0.877 -0.205 -0.393
6 2012-04-04 13:29:00 -0.534 -0.246 -0.595
GT3X information
$ Serial Number :"MRA1DXXXXXXXX"
$ Device Type :"ActiSleepPlus"
$ Firmware :"2.4.0"
$ Battery Voltage :"4.2"
$ Sample Rate :30
$ Start Date : POSIXct, format: "2012-04-04 13:29:00"
$ Stop Date : POSIXct, format: "2012-04-05 13:29:00"
$ Download Date : POSIXct, format: "2012-04-05 16:19:16.831"
$ Board Revision :"3"
$ Subject Name :"ActiSleepPlus"
$ Sex :"Male"
$ Height :"172.72"
$ Mass :"69.8532250385783"
$ Age :"42"
$ Race :"White / Caucasian"
$ Limb :"Wrist"
$ Side :"Right"
$ Dominance :"Dominant"
$ DateOfBirth :"621132192000000000"
$ Serial Prefix :"MRA"
$ Last Sample Time : 'POSIXct' num(0)
- attr(*, "tzone")= chr "GMT"
$ Acceleration Scale:341
$ Acceleration Min :"-6.0"
$ Acceleration Max :"6.0"
Sample size: 2592000
Scaling...
Lux Sample size: 2592000
GT3X information
$ Serial Number :"MRA1DXXXXXXXX"
$ Device Type :"ActiSleepPlus"
$ Firmware :"2.4.0"
$ Battery Voltage :"4.2"
$ Sample Rate :30
$ Start Date : POSIXct, format: "2012-04-04 13:29:00"
$ Stop Date : POSIXct, format: "2012-04-05 13:29:00"
$ Download Date : POSIXct, format: "2012-04-05 16:19:16.831"
$ Board Revision :"3"
$ Subject Name :"ActiSleepPlus"
$ Sex :"Male"
$ Height :"172.72"
$ Mass :"69.8532250385783"
$ Age :"42"
$ Race :"White / Caucasian"
$ Limb :"Wrist"
$ Side :"Right"
$ Dominance :"Dominant"
$ DateOfBirth :"621132192000000000"
$ Serial Prefix :"MRA"
$ Last Sample Time : 'POSIXct' num(0)
- attr(*, "tzone")= chr "GMT"
$ Acceleration Scale:341
$ Acceleration Min :"-6.0"
$ Acceleration Max :"6.0"
Sample size: 2592000
Scaling...
Lux Sample size: 2592000
trying URL 'https://github.com/THLfi/read.gt3x/files/3522749/GT3X%2B.01.day.gt3x.zip'
Content type 'application/zip' length 3670545 bytes (3.5 MB)
==================================================
downloaded 3.5 MB
GT3X information
$ Serial Number :"NEO1DXXXXXXXX"
$ Device Type :"GT3XPlus"
$ Firmware :"2.5.0"
$ Battery Voltage :"4.22"
$ Sample Rate :30
$ Start Date : POSIXct, format: "2012-06-27 10:54:00"
$ Stop Date : POSIXct, format: "2012-06-28 11:54:00"
$ Download Date : POSIXct, format: "2012-06-28 16:25:52.814"
$ Board Revision :"4"
$ Unexpected Resets :"0"
$ Sex :"Male"
$ Height :"172.72"
$ Mass :"69.8532249799612"
$ Age :"43"
$ Race :"White / Caucasian"
$ Limb :"Ankle"
$ Side :"Left"
$ Dominance :"Non-Dominant"
$ DateOfBirth :"621132192000000000"
$ Subject Name :"GT3XPlus"
$ Serial Prefix :"NEO"
$ Last Sample Time : 'POSIXct' num(0)
- attr(*, "tzone")= chr "GMT"
$ Acceleration Scale:341
$ Acceleration Min :"-6.0"
$ Acceleration Max :"6.0"
Sample size: 2700000
Scaling...
Lux Sample size: 2700000
Sampling Rate: 30Hz
Firmware Version: 2.5.0
Serial Number Prefix: NEO
X Y Z
[1,] 0 0 0
[2,] 0 0 0
[3,] 0 0 0
[4,] 0 0 0
[5,] 0 0 0
[6,] 0 0 0
Sampling Rate: 30Hz
Firmware Version: 2.5.0
Serial Number Prefix: NEO
time X Y Z
1 2012-06-27 10:54:00 0 0 0
2 2012-06-27 10:54:00 0 0 0
3 2012-06-27 10:54:00 0 0 0
4 2012-06-27 10:54:00 0 0 0
5 2012-06-27 10:54:00 0 0 0
6 2012-06-27 10:54:00 0 0 0
GT3X information
$ Serial Number :"NEO1DXXXXXXXX"
$ Device Type :"GT3XPlus"
$ Firmware :"2.5.0"
$ Battery Voltage :"4.22"
$ Sample Rate :30
$ Start Date : POSIXct, format: "2012-06-27 10:54:00"
$ Stop Date : POSIXct, format: "2012-06-28 11:54:00"
$ Download Date : POSIXct, format: "2012-06-28 16:25:52.814"
$ Board Revision :"4"
$ Unexpected Resets :"0"
$ Sex :"Male"
$ Height :"172.72"
$ Mass :"69.8532249799612"
$ Age :"43"
$ Race :"White / Caucasian"
$ Limb :"Ankle"
$ Side :"Left"
$ Dominance :"Non-Dominant"
$ DateOfBirth :"621132192000000000"
$ Subject Name :"GT3XPlus"
$ Serial Prefix :"NEO"
$ Last Sample Time : 'POSIXct' num(0)
- attr(*, "tzone")= chr "GMT"
$ Acceleration Scale:341
$ Acceleration Min :"-6.0"
$ Acceleration Max :"6.0"
Sample size: 2700000
Scaling...
Lux Sample size: 2700000
$name_gt3x
[1] "PU3_CLE2B21130054_2017-03-16.gt3x.gz"
$download_url_gt3x
[1] "https://ndownloader.figshare.com/files/21855807"
$id
[1] "PU3"
$serial
[1] "CLE2B21130054"
$name_csv
[1] "PU3_CLE2B21130054_2017-03-16.csv.gz"
$download_url_csv
[1] "https://ndownloader.figshare.com/files/24488492"
GT3X information
$ Serial Number :"TAS1H30182785"
$ Device Type :"Link"
$ Firmware :"1.7.2"
$ Battery Voltage :"4.18"
$ Sample Rate :100
$ Start Date : POSIXct, format: "2019-09-17 18:40:00"
$ Stop Date : POSIXct, format: "2019-09-18 19:00:00"
$ Last Sample Time : POSIXct, format: "2019-09-17 19:20:05"
$ TimeZone :"-04:00:00"
$ Download Date : POSIXct, format: "2019-09-17 19:20:05"
$ Board Revision :"8"
$ Unexpected Resets :"0"
$ Acceleration Scale:256
$ Acceleration Min :"-8.0"
$ Acceleration Max :"8.0"
$ Subject Name :"suffix_85"
$ Serial Prefix :"TAS"
Reading Stream...
---GT3X PARAMETERS
address: 0 key: 6 value: 1
address: 0 key: 7 value: 54703161
address: 0 key: 8 value: 8
address: 0 key: 9 value: 1534154836
address: 0 key: 13 value: 17235970
address: 0 key: 16 value: 3791650816
address: 0 key: 20 value: 0
address: 0 key: 21 value: 0
address: 0 key: 22 value: 0
address: 0 key: 23 value: 0
address: 0 key: 26 value: 2
address: 0 key: 28 value: 262013
address: 0 key: 29 value: 255
address: 0 key: 32 value: 16908288
address: 0 key: 37 value: 1024
address: 0 key: 38 value: 0
address: 0 key: 49 value: 2048
address: 0 key: 50 value: 88181047
address: 0 key: 51 value: 6.82667
address: 0 key: 55 value: 256
address: 0 key: 57 value: 333.87
address: 0 key: 58 value: 21
address: 0 key: 61 value: 2
address: 1 key: 0 value: 0
address: 1 key: 1 value: 872668711
address: 1 key: 2 (features) value: 388
address: 1 key: 3 value: 1
address: 1 key: 4 value: 4294967131
address: 1 key: 5 value: 4294967095
address: 1 key: 6 value: 4294967149
address: 1 key: 7 value: 298
address: 1 key: 8 value: 286
address: 1 key: 9 value: 300
address: 1 key: 10 value: 100
address: 1 key: 12 (start time) value: 1568745600
address: 1 key: 13 value: 1568833200
address: 1 key: 14 value: 1568745556
address: 1 key: 15 value: 74
address: 1 key: 16 value: 40
address: 1 key: 17 value: 72
address: 1 key: 20 value: 0
address: 1 key: 21 value: 0
address: 1 key: 33 value: 60000
address: 1 key: 34 value: 4294965247
address: 1 key: 35 value: 4294965190
address: 1 key: 36 value: 4294965237
address: 1 key: 37 value: 2051
address: 1 key: 38 value: 2000
address: 1 key: 39 value: 2048
address: 1 key: 40 value: 0
address: 1 key: 41 value: 1
address: 1 key: 42 value: 0
address: 1 key: 43 value: 4294967283
address: 1 key: 44 value: 0
address: 1 key: 45 value: 0
address: 1 key: 46 value: 0
---END PARAMETERS
param_start_time: 1568745600
First ACTIVTY2 packet, sample size: 100
imputing 400 values at index 1000
imputing 10500 values at index 26100
imputing 55400 values at index 37700
imputing 112600 values at index 94500
imputing 3300 values at index 209700
imputing 100 values at index 214000
Activity with Sample Size of 0
payload start: 1568747741
total_records: 214100
max_samples: 240500
imputing 100 values at index 214100
imputing 500 values at index 214200
Activity with Sample Size of 0
payload start: 1568747759
total_records: 215900
max_samples: 240500
imputing 100 values at index 215900
Total Records: 216000
Scaling...
imputing 24500 values at index 216000
Creating dimnames
CPP returning
[ FAIL 1 | WARN 2 | SKIP 4 | PASS 69 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• On CRAN (4): 'test-index_out_of_bounds.R:4:3',
'test-index_out_of_bounds.R:28:3', 'test-reordering.R:28:3',
'test-reordering.R:109:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-old_format_filesize.R:4:1'): (code run outside of `test_that()`) ──
Error in `utils::download.file(url, destfile = path, mode = "wb")`: download from 'https://ndownloader.figshare.com/files/21855801' failed
Backtrace:
▆
1. └─utils::download.file(url, destfile = path, mode = "wb") at test-old_format_filesize.R:4:1
[ FAIL 1 | WARN 2 | SKIP 4 | PASS 69 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [5s] OK
- checking PDF version of manual ... [23s] OK
- checking HTML version of manual ... [3s] OK
- DONE
Status: 1 ERROR