- using R version 4.4.2 (2024-10-31 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'portalr/DESCRIPTION' ... OK
- this is package 'portalr' version '0.4.3'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'portalr' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s] OK
- checking whether the package can be unloaded cleanly ... [1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s] OK
- checking loading without being on the library search path ... [1s] OK
- checking whether startup messages can be suppressed ... [1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [6s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [1s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [303s] ERROR
Running 'testthat.R' [303s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(portalr)
>
> test_check("portalr")
Downloading version `5.125.0` of the data...
Downloading version `5.125.0` of the data...
[ FAIL 1 | WARN 2 | SKIP 43 | PASS 81 ]
══ Skipped tests (43) ══════════════════════════════════════════════════════════
• On CRAN (43): 'test-01-data-retrieval.R:5:5',
'test-01-data-retrieval.R:41:5', 'test-01-data-retrieval.R:48:5',
'test-01-data-retrieval.R:63:5', 'test-01-data-retrieval.R:78:5',
'test-01-data-retrieval.R:99:5', 'test-03-summarize-rodents.R:6:3',
'test-03-summarize-rodents.R:32:3', 'test-03-summarize-rodents.R:38:3',
'test-03-summarize-rodents.R:60:3', 'test-03-summarize-rodents.R:85:3',
'test-03-summarize-rodents.R:110:3', 'test-03-summarize-rodents.R:129:3',
'test-03-summarize-rodents.R:195:3', 'test-99-regression.R:8:3',
'test-99-regression.R:18:3', 'test-99-regression.R:26:3',
'test-99-regression.R:44:3', 'test-99-regression.R:68:3',
'test-99-regression.R:78:3', 'test-99-regression.R:87:3',
'test-99-regression.R:100:3', 'test-99-regression.R:109:3',
'test-99-regression.R:118:3', 'test-99-regression.R:130:3',
'test-99-regression.R:141:3', 'test-99-regression.R:153:3',
'test-99-regression.R:162:3', 'test-99-regression.R:171:3',
'test-99-regression.R:181:3', 'test-99-regression.R:195:3',
'test-99-regression.R:207:3', 'test-99-regression.R:215:3',
'test-99-regression.R:227:3', 'test-99-regression.R:235:3',
'test-99-regression.R:247:3', 'test-99-regression.R:255:3',
'test-99-regression.R:267:3', 'test-99-regression.R:280:3',
'test-99-regression.R:290:3', 'test-99-regression.R:300:3',
'test-99-regression.R:318:3', 'test-99-regression.R:330:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-02-data-processing.R:8:1'): (code run outside of `test_that()`) ──
Error in `UseMethod("left_join")`: no applicable method for 'left_join' applied to an object of class "c('simpleWarning', 'warning', 'condition')"
Backtrace:
▆
1. ├─portalr::load_rodent_data(portal_data_path) at test-02-data-processing.R:8:1
2. │ └─portalr:::clean_data(...)
3. │ └─... %>% unique()
4. ├─base::unique(.)
5. ├─dplyr::select(., dplyr::all_of(columns_to_keep))
6. ├─dplyr::filter(., .data$qcflag == 1)
7. └─dplyr::left_join(., trapping_table, ...)
[ FAIL 1 | WARN 2 | SKIP 43 | PASS 81 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [5s] OK
- checking PDF version of manual ... [22s] OK
- checking HTML version of manual ... [5s] OK
- DONE
Status: 1 ERROR