* installing *source* package 'pmartR' ...
** package 'pmartR' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2024_12_08_01_50_01_8405/RtmpGGrDej/R.INSTALL14d1c6aff407a/pmartR/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c calculate_cv.cpp -o calculate_cv.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c count_missing_cpp.cpp -o count_missing_cpp.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c imd_anova.cpp -o imd_anova.o
imd_anova.cpp: In function 'arma::mat fold_change_diff_na_okay(arma::mat, arma::mat)':
imd_anova.cpp:154:22: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
154 | for(int k=0;k<of_int.size();k++){
| ~^~~~~~~~~~~~~~
imd_anova.cpp: In function 'Rcpp::List anova_cpp(arma::mat, Rcpp::NumericVector, int, arma::mat, arma::mat, arma::mat, arma::uvec, arma::uvec)':
imd_anova.cpp:218:16: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare]
218 | if (X.n_cols > m) {
| ~~~~~~~~~^~~
imd_anova.cpp:249:25: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
249 | for (int k = 0; k < continuous_covar_inds.size(); k++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
imd_anova.cpp:259:31: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare]
259 | if (group_ids_pred.n_elem > m) {
| ~~~~~~~~~~~~~~~~~~~~~~^~~
imd_anova.cpp: In function 'Rcpp::List two_factor_anova_cpp(arma::mat, arma::mat, arma::mat, arma::colvec, arma::mat, arma::mat, arma::uvec, arma::uvec)':
imd_anova.cpp:508:25: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
508 | for (int k = 0; k < continuous_covar_inds.size(); k++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
imd_anova.cpp:521:31: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare]
521 | if (group_ids_pred.n_elem > n_groups) {
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
imd_anova.cpp:481:18: warning: 'sigma2_full' may be used uninitialized [-Wmaybe-uninitialized]
481 | sig_est(i) = sigma2_full;
| ~~~~~~~~~~~^~~~~~~~~~~~~
imd_anova.cpp:406:22: note: 'sigma2_full' was declared here
406 | double sigma2_red, sigma2_full;
| ^~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kw_rcpp.cpp -o kw_rcpp.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nonmissing_per_grp.cpp -o nonmissing_per_grp.o
g++ -std=gnu++17 -shared -s -static-libgcc -o pmartR.dll tmp.def RcppExports.o calculate_cv.o count_missing_cpp.o imd_anova.o kw_rcpp.o nonmissing_per_grp.o -LD:/RCompile/recent/R-4.4.2/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.2/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.2/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_12_08_01_50_01_8405/RtmpGGrDej/R.INSTALL14d1c6aff407a/pmartR/src'
make[1]: Entering directory '/d/temp/2024_12_08_01_50_01_8405/RtmpGGrDej/R.INSTALL14d1c6aff407a/pmartR/src'
make[1]: Leaving directory '/d/temp/2024_12_08_01_50_01_8405/RtmpGGrDej/R.INSTALL14d1c6aff407a/pmartR/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-pmartR/00new/pmartR/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'pmartR' as pmartR_2.4.6.zip
* DONE (pmartR)