* using log directory 'd:/Rcompile/CRANpkg/local/4.4/mRMRe.Rcheck'
* using R version 4.4.2 (2024-10-31 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'mRMRe/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mRMRe' version '2.1.2.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mRMRe' can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-release-windows-x86_64/mRMRe-00install.html' for details.
* used C++ compiler: 'g++.exe (GCC) 13.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s] OK
* checking whether the package can be unloaded cleanly ... [2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [6s] OK
* checking Rd files ... [1s] NOTE
checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
       |                           ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
       |                           ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{method}{One of the following values: {pearson, spearman, kendall, frequency, cramersv, or cindex}.}
       |                                              ^
checkRd: (-1) correlate.Rd:19: Lost braces; missing escapes or markup?
    19 |   \item{strata}{Vector of type {factor} corresponding to the sample strata.}
       |                                ^
checkRd: (-1) correlate.Rd:20: Lost braces; missing escapes or markup?
    20 |   \item{weights}{Vector of type {numeric} corresponding to the sample weights.}
       |                                 ^
checkRd: (-1) correlate.Rd:24: Lost braces; missing escapes or markup?
    24 |   \item{alternative}{a character string specifying the alternative hypothesis,must be one of {two.sided (default), greater or less}.  You can specify just the initial letter.}
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                             ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
    20 |         have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
       |                                                                                              ^
checkRd: (-1) mRMRe.Data-class.Rd:22: Lost braces; missing escapes or markup?
    22 |         \code{strata}: is expected to be a vector of type :{ordered factor} with the strata associated to the samples provided
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:25: Lost braces; missing escapes or markup?
    25 |         \code{weights}: is expected to be a vector of type :{numeric} with the weights associated to the samples provided
       |                                                             ^
checkRd: (-1) mRMRe.Data-class.Rd:28: Lost braces; missing escapes or markup?
    28 |         \code{priors}: is expected to be a matrix of type :{numeric} where \code{priors[i, j]}: denotes an forced association between
       |                                                            ^
checkRd: (-1) mRMRe.Data-class.Rd:34: Lost braces; missing escapes or markup?
    34 |         using an estimator specified in \code{continuous_estimator}; currently, :{pearson, spearman, kendall, frequency} are supported.
       |                                                                                  ^
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [14s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [21s] OK
* checking PDF version of manual ... [29s] OK
* checking HTML version of manual ... [5s] OK
* DONE
Status: 1 NOTE