* using log directory 'd:/Rcompile/CRANpkg/local/4.4/jlme.Rcheck'
* using R version 4.4.2 (2024-10-31 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'jlme/DESCRIPTION' ... OK
* this is package 'jlme' version '0.4.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'jlme' can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-release-windows-x86_64/jlme-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s] OK
* checking whether the package can be unloaded cleanly ... [0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s] OK
* checking loading without being on the library search path ... [0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [3s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [3s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [318s] ERROR
  Running 'testthat.R' [318s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(jlme)
  > 
  > test_check("jlme")
  Starting Julia ...
  Connecting to Julia TCP server at localhost:11980 ...
  [1] 11980
  Julia version 1.8.5 detected.
  No active Julia connection. Please call `jlme_setup()`.
  [1] FALSE
                                  julia 
  "C:\\PROGRA~1\\Julia\\bin\\julia.exe" 
  Starting Julia (v1.8.5) ...
    Activating new project at `D:\temp\2025_02_25_01_50_00_15700\jl_MUv0aD`
      Updating registry at `C:\Users\CRAN\.julia\registries\General.toml`
     Resolving package versions...
     Installed InlineStrings ──── v1.4.3
     Installed Zstd_jll ───────── v1.5.7+1
     Installed MathOptInterface ─ v1.37.0
      Updating `D:\temp\2025_02_25_01_50_00_15700\jl_MUv0aD\Project.toml`
    [38e38edf] + GLM v1.9.0
  ⌅ [ff71e718] + MixedModels v4.28.0
    [3eaba693] + StatsModels v0.7.4
      Updating `D:\temp\2025_02_25_01_50_00_15700\jl_MUv0aD\Manifest.toml`
    [79e6a3ab] + Adapt v4.2.0
    [66dad0bd] + AliasTables v1.1.3
  ⌅ [4c555306] + ArrayLayouts v1.10.4
  ⌅ [69666777] + Arrow v2.7.4
    [31f734f8] + ArrowTypes v2.3.0
  ⌅ [093aae92] + BSplineKit v0.17.7
  ⌅ [aae01518] + BandedMatrices v1.7.6
    [6e4b80f9] + BenchmarkTools v1.6.0
    [c3b6d118] + BitIntegers v0.3.2
    [fa961155] + CEnum v0.5.0
    [d360d2e6] + ChainRulesCore v1.25.1
    [9e997f8a] + ChangesOfVariables v0.1.9
    [523fee87] + CodecBzip2 v0.8.5
    [5ba52731] + CodecLz4 v0.4.5
    [944b1d66] + CodecZlib v0.7.8
    [6b39b394] + CodecZstd v0.8.6
    [bbf7d656] + CommonSubexpressions v0.3.1
    [34da2185] + Compat v4.16.0
    [f0e56b4a] + ConcurrentUtilities v2.5.0
    [9a962f9c] + DataAPI v1.16.0
    [864edb3b] + DataStructures v0.18.20
    [e2d170a0] + DataValueInterfaces v1.0.0
    [b429d917] + DensityInterface v0.4.0
    [85a47980] + Dictionaries v0.4.4
    [163ba53b] + DiffResults v1.1.0
    [b552c78f] + DiffRules v1.15.1
    [31c24e10] + Distributions v0.25.117
    [ffbed154] + DocStringExtensions v0.9.3
    [4e289a0a] + EnumX v1.0.4
    [e2ba6199] + ExprTools v0.1.10
    [442a2c76] + FastGaussQuadrature v1.0.2
    [1a297f60] + FillArrays v1.13.0
    [f6369f11] + ForwardDiff v0.10.38
    [38e38edf] + GLM v1.9.0
    [34004b35] + HypergeometricFunctions v0.3.27
    [615f187c] + IfElse v0.1.1
    [313cdc1a] + Indexing v1.1.1
    [842dd82b] + InlineStrings v1.4.3
    [3587e190] + InverseFunctions v0.1.17
    [92d709cd] + IrrationalConstants v0.2.4
    [82899510] + IteratorInterfaceExtensions v1.0.0
    [692b3bcd] + JLLWrappers v1.7.0
    [682c06a0] + JSON v0.21.4
    [0f8b85d8] + JSON3 v1.14.1
  ⌅ [2ab3a3ac] + LogExpFunctions v0.3.28
    [1914dd2f] + MacroTools v0.5.15
    [b8f27783] + MathOptInterface v1.37.0
    [e1d29d7a] + Missings v1.2.0
  ⌅ [ff71e718] + MixedModels v4.28.0
    [7e9fb7ac] + MixedModelsDatasets v0.1.2
    [78c3b35d] + Mocking v0.8.1
    [d8a4904e] + MutableArithmetics v1.6.4
    [76087f3c] + NLopt v1.1.3
  ⌅ [77ba4419] + NaNMath v1.0.3
    [bac558e1] + OrderedCollections v1.8.0
  ⌅ [90014a1f] + PDMats v0.11.31
    [69de0a69] + Parsers v2.8.1
    [2dfb63ee] + PooledArrays v1.4.3
    [aea7be01] + PrecompileTools v1.2.1
    [21216c6a] + Preferences v1.4.3
    [92933f4c] + ProgressMeter v1.10.2
    [43287f4e] + PtrArrays v1.3.0
    [1fd47b50] + QuadGK v2.11.2
    [3cdcf5f2] + RecipesBase v1.3.4
    [189a3867] + Reexport v1.2.2
    [ae029012] + Requires v1.3.0
    [79098fc4] + Rmath v0.8.0
    [6c6a2e73] + Scratch v1.2.1
    [91c51154] + SentinelArrays v1.4.8
    [1277b4bf] + ShiftedArrays v2.0.0
    [a2af1166] + SortingAlgorithms v1.2.1
    [276daf66] + SpecialFunctions v2.5.0
    [03a91e81] + SplitApplyCombine v1.2.3
  ⌅ [aedffcd0] + Static v0.8.9
    [90137ffa] + StaticArrays v1.9.12
    [1e83bf80] + StaticArraysCore v1.4.3
    [82ae8749] + StatsAPI v1.7.0
    [2913bbd2] + StatsBase v0.34.4
    [4c63d2b9] + StatsFuns v1.3.2
    [3eaba693] + StatsModels v0.7.4
    [856f2bd8] + StructTypes v1.11.0
    [dc5dba14] + TZJData v1.4.0+2025a
    [3783bdb8] + TableTraits v1.0.1
    [bd369af6] + Tables v1.12.0
    [f269a46b] + TimeZones v1.21.2
    [3bb67fe8] + TranscodingStreams v0.11.3
    [9d95f2ec] + TypedTables v1.4.6
    [6e34b625] + Bzip2_jll v1.0.9+0
    [5ced341a] + Lz4_jll v1.10.1+0
    [079eb43e] + NLopt_jll v2.10.0+0
    [efe28fd5] + OpenSpecFun_jll v0.5.6+0
    [f50d1b31] + Rmath_jll v0.5.1+0
    [3161d3a3] + Zstd_jll v1.5.7+1
    [0dad84c5] + ArgTools v1.1.1
    [56f22d72] + Artifacts
    [2a0f44e3] + Base64
    [ade2ca70] + Dates
    [8ba89e20] + Distributed
    [f43a241f] + Downloads v1.6.0
    [7b1f6079] + FileWatching
    [9fa8497b] + Future
    [b77e0a4c] + InteractiveUtils
    [4af54fe1] + LazyArtifacts
    [b27032c2] + LibCURL v0.6.3
    [76f85450] + LibGit2
    [8f399da3] + Libdl
    [37e2e46d] + LinearAlgebra
    [56ddb016] + Logging
    [d6f4376e] + Markdown
    [a63ad114] + Mmap
    [ca575930] + NetworkOptions v1.2.0
    [44cfe95a] + Pkg v1.8.0
    [de0858da] + Printf
    [9abbd945] + Profile
    [3fa0cd96] + REPL
    [9a3f8284] + Random
    [ea8e919c] + SHA v0.7.0
    [9e88b42a] + Serialization
    [6462fe0b] + Sockets
    [2f01184e] + SparseArrays
    [10745b16] + Statistics
    [4607b0f0] + SuiteSparse
    [fa267f1f] + TOML v1.0.0
    [a4e569a6] + Tar v1.10.1
    [8dfed614] + Test
    [cf7118a7] + UUIDs
    [4ec0a83e] + Unicode
    [e66e0078] + CompilerSupportLibraries_jll v1.0.1+0
    [deac9b47] + LibCURL_jll v7.84.0+0
    [29816b5a] + LibSSH2_jll v1.10.2+0
    [c8ffd9c3] + MbedTLS_jll v2.28.0+0
    [14a3606d] + MozillaCACerts_jll v2022.2.1
    [4536629a] + OpenBLAS_jll v0.3.20+0
    [05823500] + OpenLibm_jll v0.8.1+0
    [83775a58] + Zlib_jll v1.2.12+3
    [8e850b90] + libblastrampoline_jll v5.1.1+0
    [8e850ede] + nghttp2_jll v1.48.0+0
    [3f19e933] + p7zip_jll v17.4.0+0
          Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
  Precompiling project...
    ✓ Zstd_jll
    ✗ GLM
    ✓ CodecZstd
    ✓ InlineStrings
    ✓ TimeZones
    ✓ Arrow
    ✓ MixedModelsDatasets
    ✓ MathOptInterface
    ✓ NLopt
    ✗ MixedModels
    8 dependencies successfully precompiled in 261 seconds. 89 already precompiled.
    3 dependencies errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the packages
  ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for StatsFuns [4c63d2b9-4356-54db-8cca-17b64c39e42c]
  │   exception = Required dependency SpecialFunctions [276daf66-3868-5448-9aa4-cd146d93841b] failed to load from a cache file.
  â”” @ Base loading.jl:1349
  ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for StatsModels [3eaba693-59b7-5ba5-a881-562e759f1c8d]
  │   exception = ErrorException("Required dependency SpecialFunctions [276daf66-3868-5448-9aa4-cd146d93841b] failed to load from a cache file.")
  â”” @ Base loading.jl:1349
  ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for StatsFuns [4c63d2b9-4356-54db-8cca-17b64c39e42c]
  │   exception = ErrorException("Required dependency SpecialFunctions [276daf66-3868-5448-9aa4-cd146d93841b] failed to load from a cache file.")
  â”” @ Base loading.jl:1349
  ERROR: LoadError: ArgumentError: Package Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] is required but does not seem to be installed:
   - Run `Pkg.instantiate()` to install all recorded dependencies.
  
  Stacktrace:
   [1] _require(pkg::Base.PkgId)
     @ Base .\loading.jl:1306
   [2] _require_prelocked(uuidkey::Base.PkgId)
     @ Base .\loading.jl:1200
   [3] macro expansion
     @ .\loading.jl:1180 [inlined]
   [4] macro expansion
     @ .\lock.jl:223 [inlined]
   [5] require(into::Module, mod::Symbol)
     @ Base .\loading.jl:1144
   [6] include
     @ .\Base.jl:419 [inlined]
   [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
     @ Base .\loading.jl:1554
   [8] top-level scope
     @ stdin:1
  in expression starting at C:\Users\CRAN\.julia\packages\GLM\vM20T\src\GLM.jl:1
  in expression starting at stdin:1
  Timing stopped at: 0.01 0.03 307.2
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-model.R:11:3'): (code run outside of `test_that()`) ────────────
  Error: Evaluation in Julia failed.
  Original Julia error message:
  LoadError: Failed to precompile GLM [38e38edf-8417-5370-95a0-9cbb8c7f171a] to C:\Users\CRAN\.julia\compiled\v1.8\GLM\jl_1FC1.tmp.
  Stacktrace:
    [1] error(s::String)
      @ Base .\error.jl:35
    [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
      @ Base .\loading.jl:1707
    [3] compilecache
      @ .\loading.jl:1651 [inlined]
    [4] _require(pkg::Base.PkgId)
      @ Base .\loading.jl:1337
    [5] _require_prelocked(uuidkey::Base.PkgId)
      @ Base .\loading.jl:1200
    [6] macro expansion
      @ .\loading.jl:1180 [inlined]
    [7] macro expansion
      @ .\lock.jl:223 [inlined]
    [8] require(into::Module, mod::Symbol)
      @ Base .\loading.jl:1144
    [9] eval
      @ .\boot.jl:368 [inlined]
   [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
      @ Base .\loading.jl:1428
   [11] include_string (repeats 2 times)
      @ .\loading.jl:1438 [inlined]
   [12] mainevalcmd(str::String)
      @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150
   [13] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
      @ Base .\essentials.jl:729
   [14] invokelatest(::Any, ::Any, ::Vararg{Any})
      @ Base .\essentials.jl:726
   [15] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
      @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67
   [16] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
      @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55
   [17] serve_repl(sock::Sockets.TCPSocket)
      @ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185
   [18] (::Main.RConnector.var"#3#5")()
      @ Main.RConnector .\task.jl:484
  in expression starting at string:3
  Backtrace:
       â–†
    1. ├─base::print(...) at test-model.R:10:1
    2. ├─base::system.time(...)
    3. └─jlme::jlme_setup(restart = TRUE, verbose = TRUE) at test-model.R:11:3
    4.   ├─base::do.call(.jlme_setup, params)
    5.   └─jlme (local) `<fn>`(add = NULL, threads = NULL, verbose = TRUE)
    6.     └─jlme:::load_libs(add = add)
    7.       └─jlme::jl("\n    using StatsModels;\n    using GLM;\n    using MixedModels;\n  ")
    8.         └─JuliaConnectoR::juliaEval(expr)
    9.           └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
   10.             ├─base::tryCatch(...)
   11.             │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   12.             │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   13.             │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   14.             └─JuliaConnectoR:::doCallJulia(funName, jlargs)
   15.               └─JuliaConnectoR:::handleCallbacksAndOutput()
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
  Error: Test failures
  Execution halted
* checking PDF version of manual ... [28s] OK
* checking HTML version of manual ... [2s] OK
* DONE
Status: 1 ERROR