- using R version 4.4.2 (2024-10-31 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'jlme/DESCRIPTION' ... OK
- this is package 'jlme' version '0.4.1'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'jlme' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s] OK
- checking whether the package can be unloaded cleanly ... [0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s] OK
- checking loading without being on the library search path ... [0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [3s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [5s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [29s] ERROR
Running 'testthat.R' [29s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(jlme)
>
> test_check("jlme")
Starting Julia ...
Connecting to Julia TCP server at localhost:11980 ...
[1] 11980
Julia version 1.8.5 detected.
No active Julia connection. Please call `jlme_setup()`.
[1] FALSE
julia
"C:\\PROGRA~1\\Julia\\bin\\julia.exe"
Starting Julia (v1.8.5) ...
Activating new project at `D:\temp\2025_02_20_01_50_00_13994\jl_kjixW7`
Updating registry at `C:\Users\CRAN\.julia\registries\General.toml`
Resolving package versions...
Timing stopped at: 0.04 0.03 15.32
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-model.R:11:3'): (code run outside of `test_that()`) ────────────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: Error when installing package MutableArithmetics:
IOError: open("C:\\Users\\CRAN\\.julia\\packages\\MutableArithmetics\\tNSBd\\src\\implementations\\MutatingStepRange.jl", 769, 33206): no such file or directory (ENOENT)
Stacktrace:
[1] uv_error
@ .\libuv.jl:97 [inlined]
[2] open(path::String, flags::UInt16, mode::UInt64)
@ Base.Filesystem .\filesystem.jl:105
[3] sendfile(src::String, dst::String)
@ Base.Filesystem .\file.jl:994
[4] cptree(src::String, dst::String; force::Bool, follow_symlinks::Bool)
@ Base.Filesystem .\file.jl:351
[5] cptree(src::String, dst::String; force::Bool, follow_symlinks::Bool) (repeats 2 times)
@ Base.Filesystem .\file.jl:348
[6] cp(src::String, dst::String; force::Bool, follow_symlinks::Bool)
@ Base.Filesystem .\file.jl:382
[7] rename(src::String, dst::String; force::Bool)
@ Base.Filesystem .\file.jl:981
[8] rename
@ .\file.jl:977 [inlined]
[9] #mv#15
@ .\file.jl:426 [inlined]
[10] install_archive(urls::Vector{Pair{String, Bool}}, hash::Base.SHA1, version_path::String; io::Base.PipeEndpoint)
@ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:563
[11] macro expansion
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:761 [inlined]
[12] (::Pkg.Operations.var"#46#51"{Bool, Pkg.Types.Context, Tuple{SubString{String}, Dict{Base.UUID, Base.SHA1}}, Channel{Any}, Channel{NamedTuple{(:pkg, :urls, :path), Tuple{Pkg.Types.PackageEntry, Set{String}, String}}}})()
@ Pkg.Operations .\task.jl:484
Stacktrace:
[1] pkgerror(::String, ::Vararg{String})
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Types.jl:67
[2] macro expansion
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:783 [inlined]
[3] macro expansion
@ .\task.jl:454 [inlined]
[4] download_source(ctx::Pkg.Types.Context; readonly::Bool)
@ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:724
[5] download_source
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:700 [inlined]
[6] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, new_git::Set{Base.UUID}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform)
@ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:1278
[7] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, kwargs::Base.Pairs{Symbol, Base.PipeEndpoint, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.PipeEndpoint}}})
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:275
[8] add(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:156
[9] add(pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:145
[10] #add#27
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:144 [inlined]
[11] add(pkgs::Vector{String})
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:144
[12] top-level scope
@ string:4
[13] eval
@ .\boot.jl:368 [inlined]
[14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[15] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[16] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150
[17] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[18] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[19] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67
[20] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55
[21] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185
[22] (::Main.RConnector.var"#3#5")()
@ Main.RConnector .\task.jl:484
in expression starting at string:4
Backtrace:
▆
1. ├─base::print(...) at test-model.R:10:1
2. ├─base::system.time(...)
3. └─jlme::jlme_setup(restart = TRUE, verbose = TRUE) at test-model.R:11:3
4. ├─base::do.call(.jlme_setup, params)
5. └─jlme (local) `<fn>`(add = NULL, threads = NULL, verbose = TRUE)
6. └─jlme:::init_proj(add = add, verbose = verbose)
7. └─jlme::jl(...)
8. └─JuliaConnectoR::juliaEval(s_interpolated)
9. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
10. ├─base::tryCatch(...)
11. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
12. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
13. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
14. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
15. └─JuliaConnectoR:::handleCallbacksAndOutput()
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
Error: Test failures
Execution halted
- checking PDF version of manual ... [28s] OK
- checking HTML version of manual ... [2s] OK
- DONE
Status: 1 ERROR