* installing *source* package 'fdasrvf' ...
** package 'fdasrvf' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2025_02_20_01_50_00_13994/Rtmp8c8dHa/R.INSTALL1e6e05e944b5b/fdasrvf/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c wrapperSRSF.cpp -o wrapperSRSF.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c wrapperQMAP.cpp -o wrapperQMAP.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bayesian.cpp -o bayesian.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pair_align_functions_expomap.cpp -o pair_align_functions_expomap.o
pair_align_functions_expomap.cpp: In function 'arma::vec calcY(double, arma::vec)':
pair_align_functions_expomap.cpp:9:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
9 | for (unsigned int i = 0; i < len; i++) {
| ~~^~~~~
pair_align_functions_expomap.cpp:14:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
14 | for (unsigned int i = 0; i < len; i++) {
| ~~^~~~~
pair_align_functions_expomap.cpp: In function 'Rcpp::NumericVector cuL2norm2(arma::vec, arma::vec)':
pair_align_functions_expomap.cpp:27:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
27 | for (unsigned int i = 0; i < n; i++) {
| ~~^~~
pair_align_functions_expomap.cpp:34:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
34 | for (unsigned int i = 0; i < n; i++) {
| ~~^~~
pair_align_functions_expomap.cpp:41:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
41 | for (unsigned int i = 0; i < (n - 1); i++) {
| ~~^~~~~~~~~
pair_align_functions_expomap.cpp:46:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
46 | for (unsigned int i = 0; i < (n - 1); i++) {
| ~~^~~~~~~~~
pair_align_functions_expomap.cpp: In function 'double order_l2norm(arma::vec, arma::vec)':
pair_align_functions_expomap.cpp:70:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
70 | for (unsigned int i = 0; i < n; i++) {
| ~~^~~
pair_align_functions_expomap.cpp:77:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
77 | for (unsigned int i = 0; i < n; i++) {
| ~~^~~
pair_align_functions_expomap.cpp:84:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
84 | for (unsigned int i = 0; i < (n - 1); i++) {
| ~~^~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fdasrsf/DP.cpp -o fdasrsf/DP.o
fdasrsf/DP.cpp: In function 'double CostFn2(const double*, const double*, int, int, int, int, int, int, double, int)':
fdasrsf/DP.cpp:228:44: warning: 'tmp_pen' may be used uninitialized [-Wmaybe-uninitialized]
228 | E += (tmp*tmp + lam*tmp_pen);
| ~~~^~~~~~~~
fdasrsf/DP.cpp:194:73: note: 'tmp_pen' was declared here
194 | double m = (j-l)/(double)(i-k), sqrtm = sqrt(m), E = 0, y, tmp, tmp_pen, ip, fp, q1dotq2;
| ^~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fdasrsf/dp_grid.cpp -o fdasrsf/dp_grid.o
fdasrsf/dp_grid.cpp: In function 'double dp_costs(double*, double*, int, double*, double*, int, int, double*, int*, int, double*, int*, int, double*, int*, double, size_t, int (*)[2])':
fdasrsf/dp_grid.cpp:32:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare]
32 | for ( i=0; i<dp_nbhd_count; ++i )
| ~^~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fdasrsf/dp_nbhd.cpp -o fdasrsf/dp_nbhd.o
In function 'size_t compute_nbhd_count_rec(size_t, int*)',
inlined from 'size_t compute_nbhd_count(size_t)' at fdasrsf/dp_nbhd.cpp:101:37,
inlined from 'int (* dp_generate_nbhd(size_t, size_t*))[2]' at fdasrsf/dp_nbhd.cpp:120:35:
fdasrsf/dp_nbhd.cpp:62:15: warning: 'states[4611686018427387903]' may be used uninitialized [-Wmaybe-uninitialized]
62 | if (states[n] != -1) {
| ~~~~~~~~^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fdasrsf/DynamicProgrammingQ2.cpp -o fdasrsf/DynamicProgrammingQ2.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fdasrsf/misc_funcs.cpp -o fdasrsf/misc_funcs.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fdasrsf/mlogit_warp_grad.cpp -o fdasrsf/mlogit_warp_grad.o
fdasrsf/mlogit_warp_grad.cpp: In function 'void mlogit_warp_grad(int*, int*, double*, double*, double*, double*, double*, int*, int*, double*, double*, int*, double*)':
fdasrsf/mlogit_warp_grad.cpp:16:16: warning: unused variable 't' [-Wunused-variable]
16 | double t = *ti;
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fdaqmap/src/myVector.cpp -o fdaqmap/src/myVector.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fdaqmap/src/UnitSquareImage.cpp -o fdaqmap/src/UnitSquareImage.o
fdaqmap/src/UnitSquareImage.cpp: In function 'void findgrad(double*, double*, const double*, int, int)':
fdaqmap/src/UnitSquareImage.cpp:9:18: warning: unused variable 'N' [-Wunused-variable]
9 | int i, j, k, N = n*t;
| ^
fdaqmap/src/UnitSquareImage.cpp: In function 'void findgrad2D(double*, double*, double*, int, int, int)':
fdaqmap/src/UnitSquareImage.cpp:64:18: warning: unused variable 'N' [-Wunused-variable]
64 | int i, j, k, N = n*t;
| ^
g++ -std=gnu++17 -shared -s -static-libgcc -o fdasrvf.dll tmp.def RcppExports.o wrapperSRSF.o wrapperQMAP.o bayesian.o pair_align_functions_expomap.o fdasrsf/DP.o fdasrsf/dp_grid.o fdasrsf/dp_nbhd.o fdasrsf/DynamicProgrammingQ2.o fdasrsf/misc_funcs.o fdasrsf/mlogit_warp_grad.o fdaqmap/src/myVector.o fdaqmap/src/UnitSquareImage.o -fopenmp -LD:/RCompile/recent/R-4.4.2/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.2/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.2/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_02_20_01_50_00_13994/Rtmp8c8dHa/R.INSTALL1e6e05e944b5b/fdasrvf/src'
make[1]: Entering directory '/d/temp/2025_02_20_01_50_00_13994/Rtmp8c8dHa/R.INSTALL1e6e05e944b5b/fdasrvf/src'
make[1]: Leaving directory '/d/temp/2025_02_20_01_50_00_13994/Rtmp8c8dHa/R.INSTALL1e6e05e944b5b/fdasrvf/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-fdasrvf/00new/fdasrvf/libs/x64
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'fdasrvf' as fdasrvf_2.3.6.zip
* DONE (fdasrvf)