* installing *source* package 'bio3d' ...
** package 'bio3d' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2024_12_08_01_50_01_8405/RtmpgZW2Il/R.INSTALL155b03ae25bfc/bio3d/src'
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c gzstream.cpp -o gzstream.o
gcc  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c init.c -o init.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c read_cif.cpp -o read_cif.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c read_crd.cpp -o read_crd.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c read_pdb.cpp -o read_pdb.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c read_prmtop.cpp -o read_prmtop.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I. -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c utils.cpp -o utils.o
g++ -std=gnu++17 -shared -s -static-libgcc -o bio3d.dll tmp.def RcppExports.o gzstream.o init.o read_cif.o read_crd.o read_pdb.o read_prmtop.o utils.o -lz -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.2/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_12_08_01_50_01_8405/RtmpgZW2Il/R.INSTALL155b03ae25bfc/bio3d/src'
make[1]: Entering directory '/d/temp/2024_12_08_01_50_01_8405/RtmpgZW2Il/R.INSTALL155b03ae25bfc/bio3d/src'
make[1]: Leaving directory '/d/temp/2024_12_08_01_50_01_8405/RtmpgZW2Il/R.INSTALL155b03ae25bfc/bio3d/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-bio3d/00new/bio3d/libs/x64
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'bio3d' as bio3d_2.4-5.zip
* DONE (bio3d)