* installing *source* package 'adephylo' ...
** package 'adephylo' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2024_12_08_01_50_01_8405/RtmpENeedx/R.INSTALL131d027496557/adephylo/src'
gcc  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG     -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c adesub.c -o adesub.o
adesub.c: In function 'getpermutation':
adesub.c:479:15: warning: unused variable 'seed' [-Wunused-variable]
  479 |     int i, n, seed;
      |               ^~~~
gcc  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG     -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c distPhylo.c -o distPhylo.o
gcc  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG     -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c init.c -o init.o
gcc  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG     -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c misc.c -o misc.o
gcc  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG     -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c phylog.c -o phylog.o
gcc  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG     -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c sptips.c -o sptips.o
gcc -shared -s -static-libgcc -o adephylo.dll tmp.def adesub.o distPhylo.o init.o misc.o phylog.o sptips.o -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.2/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_12_08_01_50_01_8405/RtmpENeedx/R.INSTALL131d027496557/adephylo/src'
make[1]: Entering directory '/d/temp/2024_12_08_01_50_01_8405/RtmpENeedx/R.INSTALL131d027496557/adephylo/src'
make[1]: Leaving directory '/d/temp/2024_12_08_01_50_01_8405/RtmpENeedx/R.INSTALL131d027496557/adephylo/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-adephylo/00new/adephylo/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'adephylo' as adephylo_1.1-16.zip
* DONE (adephylo)