* installing *source* package 'GSE' ...
** package 'GSE' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2024_12_21_01_50_00_6285/RtmpghgLhk/R.INSTALL274184dbd1dd/GSE/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cov-em.cpp -o cov-em.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c emve.cpp -o emve.o
emve.cpp: In function 'arma::cube emve_resamp(arma::mat, arma::umat, arma::vec, int, int, arma::vec, arma::mat, int, arma::uvec, arma::umat, arma::uvec, arma::umat, arma::umat, arma::uvec, int, int, int, arma::uvec, arma::vec, arma::vec, int)':
emve.cpp:193:20: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
193 | if( rk == p){
| ~~~^~~~
emve.cpp:216:24: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
216 | if( rk == p){
| ~~~^~~~
emve.cpp:153:16: warning: variable 'max_cand_scale' set but not used [-Wunused-but-set-variable]
153 | double max_cand_scale;
| ^~~~~~~~~~~~~~
emve.cpp:154:16: warning: variable 'min_cand_scale' set but not used [-Wunused-but-set-variable]
154 | double min_cand_scale;
| ^~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gse-rocke.cpp -o gse-rocke.o
gse-rocke.cpp: In function 'SEXPREC* GSE_Rocke(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
gse-rocke.cpp:46:13: warning: unused variable 'print_step' [-Wunused-variable]
46 | int print_step = as<int>(Print_step);
| ^~~~~~~~~~
gse-rocke.cpp:131:13: warning: unused variable 'ximp_update' [-Wunused-variable]
131 | int ximp_update = update(x, Omega, Sigma0, false, mu0, stilde0, miss_group_unique, miss_group_counts, tuning_const_group, gamma_tune_group, wgts_mem, wgtsp_mem, ximp_mem);
| ^~~~~~~~~~~
gse-rocke.cpp: In function 'arma::mat iterS(arma::mat, arma::mat, arma::mat, bool, arma::mat, double, arma::umat, arma::uvec, arma::vec, arma::vec, double*, double*, double*, int*)':
gse-rocke.cpp:263:50: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
263 | for(int jj=0; jj < p; jj++) ximp(rowid_start + m, jj) = xpred(0, jj); // new July 28, 2014 for outputing the imputed data matrix
| ~~~^~~
gse-rocke.cpp:162:13: warning: variable 'error_code' set but not used [-Wunused-but-set-variable]
162 | int error_code = *error_code_mem; // 0 = no error, 1 = non-positive scale, 2 = non-positive definite est scatter
| ^~~~~~~~~~
gse-rocke.cpp: In function 'arma::mat gradient(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, double, arma::umat, arma::uvec, arma::vec, arma::vec, double, int, double)':
gse-rocke.cpp:295:13: warning: unused variable 'n' [-Wunused-variable]
295 | int n = x.n_rows;
| ^
gse-rocke.cpp: In function 'int update(arma::mat, arma::mat, arma::mat, bool, arma::mat, double, arma::umat, arma::uvec, arma::vec, arma::vec, double*, double*, double*)':
gse-rocke.cpp:426:50: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
426 | for(int jj=0; jj < p; jj++) ximp(rowid_start + m, jj) = xpred(0, jj); // new July 28, 2014 for outputing the imputed data matrix
| ~~~^~~
gse-rocke.cpp:416:40: warning: unused variable 'weight2' [-Wunused-variable]
416 | double weight2 = weight1 * (md / ppi);
| ^~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gse.cpp -o gse.o
gse.cpp: In function 'SEXPREC* GSE_Rcpp(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
gse.cpp:41:9: warning: unused variable 'print_step' [-Wunused-variable]
41 | int print_step = as<int>(Print_step);
| ^~~~~~~~~~
gse.cpp:102:9: warning: unused variable 'ximp_update' [-Wunused-variable]
102 | int ximp_update = update(x, Omega, Sigma0, false, mu0, stilde0, miss_group_unique, miss_group_counts, tuning_const_group, wgts_mem, wgtsp_mem, ximp_mem);
| ^~~~~~~~~~~
gse.cpp: In function 'arma::mat iterS(arma::mat, arma::mat, arma::mat, bool, arma::mat, double, arma::umat, arma::uvec, arma::vec, double*, double*, double*, int*)':
gse.cpp:233:34: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
233 | for(int jj=0; jj < p; jj++) ximp(rowid_start + m, jj) = xpred(0, jj); // new July 28, 2014 for outputing the imputed data matrix
| ~~~^~~
gse.cpp:132:9: warning: variable 'error_code' set but not used [-Wunused-but-set-variable]
132 | int error_code = *error_code_mem; // 0 = no error, 1 = non-positive scale, 2 = non-positive definite est scatter
| ^~~~~~~~~~
gse.cpp: In function 'int update(arma::mat, arma::mat, arma::mat, bool, arma::mat, double, arma::umat, arma::uvec, arma::vec, double*, double*, double*)':
gse.cpp:347:34: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
347 | for(int jj=0; jj < p; jj++) ximp(rowid_start + m, jj) = xpred(0, jj); // new July 28, 2014 for outputing the imputed data matrix
| ~~~^~~
gse.cpp:337:24: warning: unused variable 'weight2' [-Wunused-variable]
337 | double weight2 = weight1 * (md / ppi);
| ^~~~~~~
gcc -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
g++ -std=gnu++17 -shared -s -static-libgcc -o GSE.dll tmp.def cov-em.o emve.o gse-rocke.o gse.o init.o -LD:/RCompile/recent/R-4.4.2/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.2/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.2/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_12_21_01_50_00_6285/RtmpghgLhk/R.INSTALL274184dbd1dd/GSE/src'
make[1]: Entering directory '/d/temp/2024_12_21_01_50_00_6285/RtmpghgLhk/R.INSTALL274184dbd1dd/GSE/src'
make[1]: Leaving directory '/d/temp/2024_12_21_01_50_00_6285/RtmpghgLhk/R.INSTALL274184dbd1dd/GSE/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-GSE/00new/GSE/libs/x64
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'GSE' as GSE_4.2-1.zip
* DONE (GSE)