• using R version 4.5.0 (2025-04-11 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 14.2.0     GNU Fortran (GCC) 14.2.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'FMM/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'FMM' version '0.4.0'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'FMM' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s] OK
• checking whether the package can be unloaded cleanly ... [1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s] OK
• checking whether the namespace can be unloaded cleanly ... [1s] OK
• checking loading without being on the library search path ... [1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s] OK
• checking Rd files ... [1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... [0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [1s] ERROR Running examples in 'FMM-Ex.R' failed The error most likely occurred in: > ### Name: FMM-methods > ### Title: Methods for objects of class "FMM" > ### Aliases: FMM-methods summary coef fitted resid summary,FMM-method > ### coef,FMM-method fitted,FMM-method resid,FMM-method > > ### ** Examples > > ## Generate example data: > fmm2.data <- generateFMM(0, rep(2, 2), c(1.5, 3.4), c(0.2, 2.3), c(0.1, 0.2), + plot = FALSE, outvalues = TRUE, + sigmaNoise = 0.5) # add a gaussian noise with sigma = 0.5 > > ## Fit the FMM model with nback = 2 component > ## fit is an object of S4 class 'FMM' > fit <- fitFMM(vData = fmm2.data$y,timePoints = fmm2.data$t,nback = 2, + lengthAlphaGrid = 24,lengthOmegaGrid = 10) Error in `rlang::env_unlock()`: ! `env_unlock()` is defunct as of rlang 1.1.5 Backtrace:     ▆  1. └─FMM::fitFMM(...)  2. └─FMM:::addShowMethod()  3. └─rlang::env_unlock(env = asNamespace("FMM"))  4. └─rlang::abort(msg) Execution halted
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [3s] ERROR   Running 'testthat.R' [2s] Running the tests in 'tests/testthat.R' failed. Complete output:   > library(testthat)   > library(FMM)   >   > test_check("FMM")   [ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_fitFMM.R:4:3'): Parameter values in correct range. ─────────────   Error in `rlang::env_unlock(env = asNamespace("FMM"))`: `env_unlock()` is defunct as of rlang 1.1.5   Backtrace:       ▆    1. └─FMM::fitFMM(mouseGeneExp, nback = 2) at test_fitFMM.R:4:3    2. └─FMM:::addShowMethod()    3. └─rlang::env_unlock(env = asNamespace("FMM"))    4. └─rlang::abort(msg)   ── Error ('test_fitFMM.R:22:3'): Returns an S4 class object (FMM object). ──────   Error in `rlang::env_unlock(env = asNamespace("FMM"))`: `env_unlock()` is defunct as of rlang 1.1.5   Backtrace:       ▆    1. ├─testthat::expect_s4_class(fitFMM(mouseGeneExp, nback = 2), "FMM") at test_fitFMM.R:22:3    2. │ └─testthat::quasi_label(enquo(object), arg = "object")    3. │ └─rlang::eval_bare(expr, quo_get_env(quo))    4. └─FMM::fitFMM(mouseGeneExp, nback = 2)    5. └─FMM:::addShowMethod()    6. └─rlang::env_unlock(env = asNamespace("FMM"))    7. └─rlang::abort(msg)   ── Error ('test_fitFMM.R:28:3'): Correct length of each vector slot. ───────────   Error in `rlang::env_unlock(env = asNamespace("FMM"))`: `env_unlock()` is defunct as of rlang 1.1.5   Backtrace:       ▆    1. └─FMM::fitFMM(mouseGeneExp, nback = 2) at test_fitFMM.R:28:3    2. └─FMM:::addShowMethod()    3. └─rlang::env_unlock(env = asNamespace("FMM"))    4. └─rlang::abort(msg)   ── Error ('test_fitFMM.R:60:3'): FMM fit in limit parameter values simulated data. ──   Error in `rlang::env_unlock(env = asNamespace("FMM"))`: `env_unlock()` is defunct as of rlang 1.1.5   Backtrace:       ▆    1. └─FMM::fitFMM(tmpData, nback = 2) at test_fitFMM.R:60:3    2. └─FMM:::addShowMethod()    3. └─rlang::env_unlock(env = asNamespace("FMM"))    4. └─rlang::abort(msg)      [ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [3s] ERROR Error(s) in re-building vignettes: --- re-building 'FMMVignette.Rmd' using rmarkdown Quitting from FMMVignette.Rmd:216-219 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'FMMVignette.Rmd' failed with diagnostics: `env_unlock()` is defunct as of rlang 1.1.5 --- failed re-building 'FMMVignette.Rmd' SUMMARY: processing the following file failed:   'FMMVignette.Rmd' Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [21s] OK
• checking HTML version of manual ... [3s] OK
• DONE

Status: 3 ERRORs