* using log directory 'd:/Rcompile/CRANpkg/local/4.4/DMRnet.Rcheck'
* using R version 4.4.2 (2024-10-31 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'DMRnet/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DMRnet' version '0.4.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DMRnet' can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-release-windows-x86_64/DMRnet-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s] OK
* checking whether the package can be unloaded cleanly ... [0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s] OK
* checking loading without being on the library search path ... [1s] OK
* checking whether startup messages can be suppressed ... [0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [9s] OK
* checking Rd files ... [1s] NOTE
checkRd: (-1) promoter.Rd:76: Lost braces; missing escapes or markup?
    76 | It consists of E. coli promoter gene sequences starting at position -50 (p-50) and ending at position +7 (p7). Each of these 57 Fields is filled by one of {a, g, t, c}. The task is to recognize promoters, which are genetic regions which initiate the first step in the expression of adjacent genes (transcription). There are 53 promoters and 53 non-promoter sequences.
       |                                                                                                                                                            ^
checkRd: (-1) promoter.Rd:11: Lost braces; missing escapes or markup?
    11 |   \item{X1}{Sequence; filled by one of {a, g, t, c}.}
       |                                        ^
checkRd: (-1) promoter.Rd:12: Lost braces; missing escapes or markup?
    12 |   \item{X2}{Sequence; filled by one of {a, g, t, c}.}
       |                                        ^
checkRd: (-1) promoter.Rd:13: Lost braces; missing escapes or markup?
    13 |   \item{X3}{Sequence; filled by one of {a, g, t, c}.}
       |                                        ^
checkRd: (-1) promoter.Rd:14: Lost braces; missing escapes or markup?
    14 |   \item{X4}{Sequence; filled by one of {a, g, t, c}.}
       |                                        ^
checkRd: (-1) promoter.Rd:15: Lost braces; missing escapes or markup?
    15 |   \item{X5}{Sequence; filled by one of {a, g, t, c}.}
       |                                        ^
checkRd: (-1) promoter.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{X6}{Sequence; filled by one of {a, g, t, c}.}
       |                                        ^
checkRd: (-1) promoter.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item{X7}{Sequence; filled by one of {a, g, t, c}.}
       |                                        ^
checkRd: (-1) promoter.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{X8}{Sequence; filled by one of {a, g, t, c}.}
       |                                        ^
checkRd: (-1) promoter.Rd:19: Lost braces; missing escapes or markup?
    19 |   \item{X9}{Sequence; filled by one of {a, g, t, c}.}
       |                                        ^
checkRd: (-1) promoter.Rd:20: Lost braces; missing escapes or markup?
    20 |   \item{X10}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:21: Lost braces; missing escapes or markup?
    21 |   \item{X11}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:22: Lost braces; missing escapes or markup?
    22 |   \item{X12}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:23: Lost braces; missing escapes or markup?
    23 |   \item{X13}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:24: Lost braces; missing escapes or markup?
    24 |   \item{X14}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:25: Lost braces; missing escapes or markup?
    25 |   \item{X15}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:26: Lost braces; missing escapes or markup?
    26 |   \item{X16}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:27: Lost braces; missing escapes or markup?
    27 |   \item{X17}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:28: Lost braces; missing escapes or markup?
    28 |   \item{X18}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:29: Lost braces; missing escapes or markup?
    29 |   \item{X19}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:30: Lost braces; missing escapes or markup?
    30 |   \item{X20}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:31: Lost braces; missing escapes or markup?
    31 |   \item{X21}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:32: Lost braces; missing escapes or markup?
    32 |   \item{X22}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:33: Lost braces; missing escapes or markup?
    33 |   \item{X23}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:34: Lost braces; missing escapes or markup?
    34 |   \item{X24}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:35: Lost braces; missing escapes or markup?
    35 |   \item{X25}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:36: Lost braces; missing escapes or markup?
    36 |   \item{X26}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:37: Lost braces; missing escapes or markup?
    37 |   \item{X27}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:38: Lost braces; missing escapes or markup?
    38 |   \item{X28}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:39: Lost braces; missing escapes or markup?
    39 |   \item{X29}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:40: Lost braces; missing escapes or markup?
    40 |   \item{X30}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:41: Lost braces; missing escapes or markup?
    41 |   \item{X31}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:42: Lost braces; missing escapes or markup?
    42 |   \item{X32}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:43: Lost braces; missing escapes or markup?
    43 |   \item{X33}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:44: Lost braces; missing escapes or markup?
    44 |   \item{X34}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:45: Lost braces; missing escapes or markup?
    45 |   \item{X35}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:46: Lost braces; missing escapes or markup?
    46 |   \item{X36}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:47: Lost braces; missing escapes or markup?
    47 |   \item{X37}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:48: Lost braces; missing escapes or markup?
    48 |   \item{X38}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:49: Lost braces; missing escapes or markup?
    49 |   \item{X39}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:50: Lost braces; missing escapes or markup?
    50 |   \item{X40}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:51: Lost braces; missing escapes or markup?
    51 |   \item{X41}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:52: Lost braces; missing escapes or markup?
    52 |   \item{X42}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:53: Lost braces; missing escapes or markup?
    53 |   \item{X43}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:54: Lost braces; missing escapes or markup?
    54 |   \item{X44}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:55: Lost braces; missing escapes or markup?
    55 |   \item{X45}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:56: Lost braces; missing escapes or markup?
    56 |   \item{X46}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:57: Lost braces; missing escapes or markup?
    57 |   \item{X47}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:58: Lost braces; missing escapes or markup?
    58 |   \item{X48}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:59: Lost braces; missing escapes or markup?
    59 |   \item{X49}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:60: Lost braces; missing escapes or markup?
    60 |   \item{X50}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:61: Lost braces; missing escapes or markup?
    61 |   \item{X51}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:62: Lost braces; missing escapes or markup?
    62 |   \item{X52}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:63: Lost braces; missing escapes or markup?
    63 |   \item{X53}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:64: Lost braces; missing escapes or markup?
    64 |   \item{X54}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:65: Lost braces; missing escapes or markup?
    65 |   \item{X55}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:66: Lost braces; missing escapes or markup?
    66 |   \item{X56}{Sequence; filled by one of {a, g, t, c}.}
       |                                         ^
checkRd: (-1) promoter.Rd:67: Lost braces; missing escapes or markup?
    67 |   \item{X57}{Sequence; filled by one of {a, g, t, c}.}}
       |                                         ^
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [20s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [0s] OK
* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... [4s] OK
* DONE
Status: 1 NOTE