* installing *source* package 'CASMAP' ...
** package 'CASMAP' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
using C++11
make[1]: Entering directory '/d/temp/2024_12_08_01_50_01_8405/RtmpAjrisg/R.INSTALLf76c5efd4332/CASMAP/src'
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ArrayFile.cpp -o ArrayFile.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CumulativeTimeMeasurement.cpp -o CumulativeTimeMeasurement.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Exception.cpp -o Exception.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c FeatureSet.cpp -o FeatureSet.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c FilterIntervals.cpp -o FilterIntervals.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Genotype.cpp -o Genotype.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c PValues.cpp -o PValues.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Phenotype.cpp -o Phenotype.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Profiler.cpp -o Profiler.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SignificantFeaturesSearch.cpp -o SignificantFeaturesSearch.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SignificantFeaturesSearchTaroneCmh.cpp -o SignificantFeaturesSearchTaroneCmh.o
SignificantFeaturesSearchTaroneCmh.cpp: In member function 'virtual void SignificantPattern::SignificantFeaturesSearchTaroneCmh::freq_destructor()':
SignificantFeaturesSearchTaroneCmh.cpp:104:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
104 | if (freq_par_cov[0]) delete [] freq_par_cov[0]; freq_par_cov[0] = 0;
| ^~
SignificantFeaturesSearchTaroneCmh.cpp:104:57: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
104 | if (freq_par_cov[0]) delete [] freq_par_cov[0]; freq_par_cov[0] = 0;
| ^~~~~~~~~~~~
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SignificantFeaturesSearchWithCovariates.cpp -o SignificantFeaturesSearchWithCovariates.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SignificantIntervalSearch.cpp -o SignificantIntervalSearch.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SignificantIntervalSearchChi.cpp -o SignificantIntervalSearchChi.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SignificantIntervalSearchExact.cpp -o SignificantIntervalSearchExact.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SignificantIntervalSearchFais.cpp -o SignificantIntervalSearchFais.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SignificantIntervalSearchFastCmh.cpp -o SignificantIntervalSearchFastCmh.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SignificantItemsetSearch.cpp -o SignificantItemsetSearch.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SignificantItemsetSearchFacs.cpp -o SignificantItemsetSearchFacs.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Summary.cpp -o Summary.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c TransactionsData.cpp -o TransactionsData.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c double_comp.cpp -o double_comp.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gamma.cpp -o gamma.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pval.cpp -o pval.o
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sigpatsearch.cpp -o sigpatsearch.o
g++ -shared -s -static-libgcc -o CASMAP.dll tmp.def ArrayFile.o CumulativeTimeMeasurement.o Exception.o FeatureSet.o FilterIntervals.o Genotype.o PValues.o Phenotype.o Profiler.o RcppExports.o SignificantFeaturesSearch.o SignificantFeaturesSearchTaroneCmh.o SignificantFeaturesSearchWithCovariates.o SignificantIntervalSearch.o SignificantIntervalSearchChi.o SignificantIntervalSearchExact.o SignificantIntervalSearchFais.o SignificantIntervalSearchFastCmh.o SignificantItemsetSearch.o SignificantItemsetSearchFacs.o Summary.o TransactionsData.o double_comp.o gamma.o pval.o sigpatsearch.o -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.2/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_12_08_01_50_01_8405/RtmpAjrisg/R.INSTALLf76c5efd4332/CASMAP/src'
make[1]: Entering directory '/d/temp/2024_12_08_01_50_01_8405/RtmpAjrisg/R.INSTALLf76c5efd4332/CASMAP/src'
make[1]: Leaving directory '/d/temp/2024_12_08_01_50_01_8405/RtmpAjrisg/R.INSTALLf76c5efd4332/CASMAP/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-CASMAP/00new/CASMAP/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'CASMAP' as CASMAP_0.6.1.zip
* DONE (CASMAP)