* installing *source* package 'BayesReversePLLH' ...
** package 'BayesReversePLLH' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
using C++11
make[1]: Entering directory '/d/temp/2024_11_19_01_50_00_21579/RtmpYFfmRU/R.INSTALLd898168f34a4/BayesReversePLLH/src'
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BayesReversePLLH.cpp -o BayesReversePLLH.o
BayesReversePLLH.cpp: In function 'arma::vec GetSlopePLLH(arma::vec, arma::vec, int)':
BayesReversePLLH.cpp:94:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
94 | for(m=0;m<slopes.n_rows;m++){
| ~^~~~~~~~~~~~~~
BayesReversePLLH.cpp: In function 'double LikePLLHTrt(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, int, double)':
BayesReversePLLH.cpp:135:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
135 | for(m=0; m<Y.n_rows;m++){
| ~^~~~~~~~~
BayesReversePLLH.cpp: In function 'double LikePLLHCOV(arma::vec, arma::vec, arma::mat, arma::vec, arma::vec, int, arma::vec)':
BayesReversePLLH.cpp:196:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
196 | for(m=0; m<Y.n_rows;m++){
| ~^~~~~~~~~
BayesReversePLLH.cpp: In function 'double ApproxMean(arma::vec, arma::vec, arma::vec, int)':
BayesReversePLLH.cpp:291:13: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
291 | for(m=0; m<Y.n_rows;m++){
| ~^~~~~~~~~
BayesReversePLLH.cpp: In function 'arma::vec SurvPLLH(arma::vec, arma::vec, arma::vec, int)':
BayesReversePLLH.cpp:351:13: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
351 | for(m=0; m<Y.n_rows;m++){
| ~^~~~~~~~~
BayesReversePLLH.cpp:345:10: warning: unused variable 'mean' [-Wunused-variable]
345 | double mean=0;
| ^~~~
BayesReversePLLH.cpp: In function 'int SampleBirth(arma::vec, int)':
BayesReversePLLH.cpp:424:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
424 | for(m=1;m<cumprob.n_rows;m++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:438:14: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
438 | for(m=1;m<cumprob.n_rows;m++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp: In function 'Rcpp::List BayesPiecewiseLinearLogHazardTrt(arma::vec, arma::vec, arma::vec, double, int)':
BayesReversePLLH.cpp:905:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
905 | for(j=Spot;j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:912:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
912 | for(j=Spot; j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:977:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
977 | for(j=(Spot+1);j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:982:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
982 | for(j=(Spot+1);j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:1045:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
1045 | for(j=0;j<sstore.n_cols;j++){
| ~^~~~~~~~~~~~~~
BayesReversePLLH.cpp:1048:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
1048 | for(j=0;j<lamstore.n_cols;j++){
| ~^~~~~~~~~~~~~~~~
BayesReversePLLH.cpp:513:10: warning: unused variable 'PSpike' [-Wunused-variable]
513 | double PSpike=PSlab/(1-PSlab);
| ^~~~~~
BayesReversePLLH.cpp:519:7: warning: unused variable 'b' [-Wunused-variable]
519 | int b=0;
| ^
BayesReversePLLH.cpp:520:7: warning: unused variable 'k' [-Wunused-variable]
520 | int k=0;
| ^
BayesReversePLLH.cpp:567:7: warning: unused variable 'which1' [-Wunused-variable]
567 | int which1=0;
| ^~~~~~
BayesReversePLLH.cpp:572:10: warning: unused variable 'mean2' [-Wunused-variable]
572 | double mean2=0;
| ^~~~~
BayesReversePLLH.cpp:578:10: warning: unused variable 'mean1' [-Wunused-variable]
578 | double mean1=0;
| ^~~~~
BayesReversePLLH.cpp:579:10: warning: unused variable 'Con' [-Wunused-variable]
579 | double Con=0;
| ^~~
BayesReversePLLH.cpp:638:10: warning: unused variable 'bprop' [-Wunused-variable]
638 | double bprop=1;
| ^~~~~
BayesReversePLLH.cpp:639:10: warning: unused variable 'Intb' [-Wunused-variable]
639 | double Intb=1;
| ^~~~
BayesReversePLLH.cpp:640:10: warning: unused variable 'Numb' [-Wunused-variable]
640 | double Numb=2;
| ^~~~
BayesReversePLLH.cpp:644:10: warning: unused variable 'prob1' [-Wunused-variable]
644 | double prob1=0;
| ^~~~~
BayesReversePLLH.cpp:645:10: warning: unused variable 'med2' [-Wunused-variable]
645 | double med2=0;
| ^~~~
BayesReversePLLH.cpp: In function 'double LikePEHTrt(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, int, double)':
BayesReversePLLH.cpp:1125:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
1125 | for(m=0; m<Y.n_rows;m++){
| ~^~~~~~~~~
BayesReversePLLH.cpp: In function 'double LikePEHCOV(arma::vec, arma::vec, arma::mat, arma::vec, arma::vec, int, arma::vec)':
BayesReversePLLH.cpp:1168:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
1168 | for(m=0; m<Y.n_rows;m++){
| ~^~~~~~~~~
BayesReversePLLH.cpp: In function 'Rcpp::List BayesPiecewiseHazardTrt(arma::vec, arma::vec, arma::vec, double, int)':
BayesReversePLLH.cpp:1539:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
1539 | for(j=(Spot+1);j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:1546:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
1546 | for(j=(Spot+2);j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:1636:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
1636 | for(j=Spot;j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:1648:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
1648 | for(j=Spot; j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:1748:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
1748 | for(j=0;j<sstore.n_cols;j++){
| ~^~~~~~~~~~~~~~
BayesReversePLLH.cpp:1752:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
1752 | for(j=0;j<lamstore.n_cols;j++){
| ~^~~~~~~~~~~~~~~~
BayesReversePLLH.cpp:1238:7: warning: unused variable 'b' [-Wunused-variable]
1238 | int b=0;
| ^
BayesReversePLLH.cpp:1246:10: warning: unused variable 'beta' [-Wunused-variable]
1246 | double beta = 1 ;
| ^~~~
BayesReversePLLH.cpp:1272:10: warning: unused variable 'betaprop' [-Wunused-variable]
1272 | double betaprop=0;
| ^~~~~~~~
BayesReversePLLH.cpp:1275:10: warning: unused variable 'svar' [-Wunused-variable]
1275 | double svar=1;
| ^~~~
BayesReversePLLH.cpp:1276:10: warning: unused variable 'Ints' [-Wunused-variable]
1276 | double Ints=1;
| ^~~~
BayesReversePLLH.cpp:1277:10: warning: unused variable 'Nums' [-Wunused-variable]
1277 | double Nums=2;
| ^~~~
BayesReversePLLH.cpp:1281:10: warning: unused variable 'mean1' [-Wunused-variable]
1281 | double mean1=0;
| ^~~~~
BayesReversePLLH.cpp:1282:10: warning: unused variable 'Con' [-Wunused-variable]
1282 | double Con=0;
| ^~~
BayesReversePLLH.cpp:1303:7: warning: unused variable 'which1' [-Wunused-variable]
1303 | int which1=0;
| ^~~~~~
BayesReversePLLH.cpp:1308:10: warning: unused variable 'bprop' [-Wunused-variable]
1308 | double bprop=1;
| ^~~~~
BayesReversePLLH.cpp:1309:10: warning: unused variable 'Intb' [-Wunused-variable]
1309 | double Intb=1;
| ^~~~
BayesReversePLLH.cpp:1310:10: warning: unused variable 'Numb' [-Wunused-variable]
1310 | double Numb=2;
| ^~~~
BayesReversePLLH.cpp:1314:10: warning: unused variable 'prob1' [-Wunused-variable]
1314 | double prob1=0;
| ^~~~~
BayesReversePLLH.cpp:1315:10: warning: unused variable 'med2' [-Wunused-variable]
1315 | double med2=0;
| ^~~~
BayesReversePLLH.cpp: In function 'Rcpp::List BayesPiecewiseHazardCOV(arma::vec, arma::vec, arma::mat, double, int)':
BayesReversePLLH.cpp:1997:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
1997 | for(j=0;j<COV.n_cols;j++){
| ~^~~~~~~~~~~
BayesReversePLLH.cpp:2034:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
2034 | for(j=0;j<COV.n_cols;j++){
| ~^~~~~~~~~~~
BayesReversePLLH.cpp:2195:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
2195 | for(j=(Spot+1);j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:2202:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
2202 | for(j=(Spot+2);j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:2292:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
2292 | for(j=Spot;j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:2304:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
2304 | for(j=Spot; j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:2382:14: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
2382 | for(j=0;j<COV.n_cols;j++){
| ~^~~~~~~~~~~
BayesReversePLLH.cpp:2409:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
2409 | for(j=0;j<sstore.n_cols;j++){
| ~^~~~~~~~~~~~~~
BayesReversePLLH.cpp:2413:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
2413 | for(j=0;j<lamstore.n_cols;j++){
| ~^~~~~~~~~~~~~~~~
BayesReversePLLH.cpp:2419:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
2419 | for(j=0;j<COV.n_cols;j++){
| ~^~~~~~~~~~~
BayesReversePLLH.cpp:1880:7: warning: unused variable 'b' [-Wunused-variable]
1880 | int b=0;
| ^
BayesReversePLLH.cpp:1881:7: warning: unused variable 'k' [-Wunused-variable]
1881 | int k=0;
| ^
BayesReversePLLH.cpp:1888:10: warning: unused variable 'beta' [-Wunused-variable]
1888 | double beta = 1 ;
| ^~~~
BayesReversePLLH.cpp:1914:10: warning: unused variable 'betaprop' [-Wunused-variable]
1914 | double betaprop=0;
| ^~~~~~~~
BayesReversePLLH.cpp:1917:10: warning: unused variable 'svar' [-Wunused-variable]
1917 | double svar=1;
| ^~~~
BayesReversePLLH.cpp:1918:10: warning: unused variable 'Ints' [-Wunused-variable]
1918 | double Ints=1;
| ^~~~
BayesReversePLLH.cpp:1919:10: warning: unused variable 'Nums' [-Wunused-variable]
1919 | double Nums=2;
| ^~~~
BayesReversePLLH.cpp:1921:10: warning: unused variable 'mean2' [-Wunused-variable]
1921 | double mean2=0;
| ^~~~~
BayesReversePLLH.cpp:1923:10: warning: unused variable 'mean1' [-Wunused-variable]
1923 | double mean1=0;
| ^~~~~
BayesReversePLLH.cpp:1924:10: warning: unused variable 'Con' [-Wunused-variable]
1924 | double Con=0;
| ^~~
BayesReversePLLH.cpp:1945:7: warning: unused variable 'which1' [-Wunused-variable]
1945 | int which1=0;
| ^~~~~~
BayesReversePLLH.cpp:1950:10: warning: unused variable 'bprop' [-Wunused-variable]
1950 | double bprop=1;
| ^~~~~
BayesReversePLLH.cpp:1951:10: warning: unused variable 'Intb' [-Wunused-variable]
1951 | double Intb=1;
| ^~~~
BayesReversePLLH.cpp:1952:10: warning: unused variable 'Numb' [-Wunused-variable]
1952 | double Numb=2;
| ^~~~
BayesReversePLLH.cpp:1956:10: warning: unused variable 'prob1' [-Wunused-variable]
1956 | double prob1=0;
| ^~~~~
BayesReversePLLH.cpp:1957:10: warning: unused variable 'med2' [-Wunused-variable]
1957 | double med2=0;
| ^~~~
BayesReversePLLH.cpp: In function 'Rcpp::List BayesPiecewiseLinearLogHazardCOV(arma::vec, arma::vec, arma::mat, double, int)':
BayesReversePLLH.cpp:2613:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
2613 | for(j=0;j<COV.n_cols;j++){
| ~^~~~~~~~~~~
BayesReversePLLH.cpp:2652:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
2652 | for(j=0;j<COV.n_cols;j++){
| ~^~~~~~~~~~~
BayesReversePLLH.cpp:2835:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
2835 | for(j=Spot;j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:2842:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
2842 | for(j=Spot; j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:2907:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
2907 | for(j=(Spot+1);j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:2912:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
2912 | for(j=(Spot+1);j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:2948:14: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
2948 | for(j=0;j<COV.n_cols;j++){
| ~^~~~~~~~~~~
BayesReversePLLH.cpp:2976:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
2976 | for(j=0;j<sstore.n_cols;j++){
| ~^~~~~~~~~~~~~~
BayesReversePLLH.cpp:2980:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
2980 | for(j=0;j<lamstore.n_cols;j++){
| ~^~~~~~~~~~~~~~~~
BayesReversePLLH.cpp:2986:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
2986 | for(j=0;j<COV.n_cols;j++){
| ~^~~~~~~~~~~
BayesReversePLLH.cpp:2490:7: warning: unused variable 'b' [-Wunused-variable]
2490 | int b=0;
| ^
BayesReversePLLH.cpp:2491:7: warning: unused variable 'k' [-Wunused-variable]
2491 | int k=0;
| ^
BayesReversePLLH.cpp:2498:10: warning: unused variable 'beta' [-Wunused-variable]
2498 | double beta = 1 ;
| ^~~~
BayesReversePLLH.cpp:2524:10: warning: unused variable 'betaprop' [-Wunused-variable]
2524 | double betaprop=0;
| ^~~~~~~~
BayesReversePLLH.cpp:2527:10: warning: unused variable 'svar' [-Wunused-variable]
2527 | double svar=1;
| ^~~~
BayesReversePLLH.cpp:2528:10: warning: unused variable 'Ints' [-Wunused-variable]
2528 | double Ints=1;
| ^~~~
BayesReversePLLH.cpp:2529:10: warning: unused variable 'Nums' [-Wunused-variable]
2529 | double Nums=2;
| ^~~~
BayesReversePLLH.cpp:2531:10: warning: unused variable 'mean2' [-Wunused-variable]
2531 | double mean2=0;
| ^~~~~
BayesReversePLLH.cpp:2533:10: warning: unused variable 'mean1' [-Wunused-variable]
2533 | double mean1=0;
| ^~~~~
BayesReversePLLH.cpp:2534:10: warning: unused variable 'Con' [-Wunused-variable]
2534 | double Con=0;
| ^~~
BayesReversePLLH.cpp:2555:7: warning: unused variable 'which1' [-Wunused-variable]
2555 | int which1=0;
| ^~~~~~
BayesReversePLLH.cpp:2560:10: warning: unused variable 'bprop' [-Wunused-variable]
2560 | double bprop=1;
| ^~~~~
BayesReversePLLH.cpp:2561:10: warning: unused variable 'Intb' [-Wunused-variable]
2561 | double Intb=1;
| ^~~~
BayesReversePLLH.cpp:2562:10: warning: unused variable 'Numb' [-Wunused-variable]
2562 | double Numb=2;
| ^~~~
BayesReversePLLH.cpp:2566:10: warning: unused variable 'prob1' [-Wunused-variable]
2566 | double prob1=0;
| ^~~~~
BayesReversePLLH.cpp:2567:10: warning: unused variable 'med2' [-Wunused-variable]
2567 | double med2=0;
| ^~~~
BayesReversePLLH.cpp: In function 'double LikePEH(arma::vec, arma::vec, arma::vec, arma::vec, int)':
BayesReversePLLH.cpp:3025:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
3025 | for(m=0; m<Y.n_rows;m++){
| ~^~~~~~~~~
BayesReversePLLH.cpp: In function 'Rcpp::List BayesPiecewiseHazard(arma::vec, arma::vec, double, int)':
BayesReversePLLH.cpp:3337:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
3337 | for(j=(Spot+1);j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:3344:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
3344 | for(j=(Spot+2);j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:3434:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
3434 | for(j=Spot;j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:3446:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
3446 | for(j=Spot; j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:3525:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
3525 | for(j=0;j<sstore.n_cols;j++){
| ~^~~~~~~~~~~~~~
BayesReversePLLH.cpp:3529:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
3529 | for(j=0;j<lamstore.n_cols;j++){
| ~^~~~~~~~~~~~~~~~
BayesReversePLLH.cpp:3092:7: warning: unused variable 'b' [-Wunused-variable]
3092 | int b=0;
| ^
BayesReversePLLH.cpp:3100:10: warning: unused variable 'beta' [-Wunused-variable]
3100 | double beta = 1 ;
| ^~~~
BayesReversePLLH.cpp:3122:10: warning: unused variable 'betaprop' [-Wunused-variable]
3122 | double betaprop=0;
| ^~~~~~~~
BayesReversePLLH.cpp:3125:10: warning: unused variable 'svar' [-Wunused-variable]
3125 | double svar=1;
| ^~~~
BayesReversePLLH.cpp:3126:10: warning: unused variable 'Ints' [-Wunused-variable]
3126 | double Ints=1;
| ^~~~
BayesReversePLLH.cpp:3127:10: warning: unused variable 'Nums' [-Wunused-variable]
3127 | double Nums=2;
| ^~~~
BayesReversePLLH.cpp:3131:10: warning: unused variable 'mean1' [-Wunused-variable]
3131 | double mean1=0;
| ^~~~~
BayesReversePLLH.cpp:3132:10: warning: unused variable 'Con' [-Wunused-variable]
3132 | double Con=0;
| ^~~
BayesReversePLLH.cpp:3153:7: warning: unused variable 'which1' [-Wunused-variable]
3153 | int which1=0;
| ^~~~~~
BayesReversePLLH.cpp:3158:10: warning: unused variable 'bprop' [-Wunused-variable]
3158 | double bprop=1;
| ^~~~~
BayesReversePLLH.cpp:3159:10: warning: unused variable 'Intb' [-Wunused-variable]
3159 | double Intb=1;
| ^~~~
BayesReversePLLH.cpp:3160:10: warning: unused variable 'Numb' [-Wunused-variable]
3160 | double Numb=2;
| ^~~~
BayesReversePLLH.cpp:3164:10: warning: unused variable 'prob1' [-Wunused-variable]
3164 | double prob1=0;
| ^~~~~
BayesReversePLLH.cpp:3165:10: warning: unused variable 'med2' [-Wunused-variable]
3165 | double med2=0;
| ^~~~
BayesReversePLLH.cpp: In function 'double LikePLLH(arma::vec, arma::vec, arma::vec, arma::vec, int)':
BayesReversePLLH.cpp:3609:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
3609 | for(m=0; m<Y.n_rows;m++){
| ~^~~~~~~~~
BayesReversePLLH.cpp: In function 'Rcpp::List BayesPiecewiseLinearLogHazard(arma::vec, arma::vec, double, int)':
BayesReversePLLH.cpp:4031:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
4031 | for(j=Spot;j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:4038:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
4038 | for(j=Spot; j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:4103:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
4103 | for(j=(Spot+1);j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:4108:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
4108 | for(j=(Spot+1);j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:4152:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
4152 | for(j=0;j<sstore.n_cols;j++){
| ~^~~~~~~~~~~~~~
BayesReversePLLH.cpp:4155:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
4155 | for(j=0;j<lamstore.n_cols;j++){
| ~^~~~~~~~~~~~~~~~
BayesReversePLLH.cpp:3680:10: warning: unused variable 'PSpike' [-Wunused-variable]
3680 | double PSpike=PSlab/(1-PSlab);
| ^~~~~~
BayesReversePLLH.cpp:3686:7: warning: unused variable 'b' [-Wunused-variable]
3686 | int b=0;
| ^
BayesReversePLLH.cpp:3687:7: warning: unused variable 'k' [-Wunused-variable]
3687 | int k=0;
| ^
BayesReversePLLH.cpp:3727:7: warning: unused variable 'which1' [-Wunused-variable]
3727 | int which1=0;
| ^~~~~~
BayesReversePLLH.cpp:3732:10: warning: unused variable 'mean2' [-Wunused-variable]
3732 | double mean2=0;
| ^~~~~
BayesReversePLLH.cpp:3738:10: warning: unused variable 'mean1' [-Wunused-variable]
3738 | double mean1=0;
| ^~~~~
BayesReversePLLH.cpp:3739:10: warning: unused variable 'Con' [-Wunused-variable]
3739 | double Con=0;
| ^~~
BayesReversePLLH.cpp:3798:10: warning: unused variable 'bprop' [-Wunused-variable]
3798 | double bprop=1;
| ^~~~~
BayesReversePLLH.cpp:3799:10: warning: unused variable 'Intb' [-Wunused-variable]
3799 | double Intb=1;
| ^~~~
BayesReversePLLH.cpp:3800:10: warning: unused variable 'Numb' [-Wunused-variable]
3800 | double Numb=2;
| ^~~~
BayesReversePLLH.cpp:3804:10: warning: unused variable 'prob1' [-Wunused-variable]
3804 | double prob1=0;
| ^~~~~
BayesReversePLLH.cpp:3805:10: warning: unused variable 'med2' [-Wunused-variable]
3805 | double med2=0;
| ^~~~
g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -shared -s -static-libgcc -o BayesReversePLLH.dll tmp.def BayesReversePLLH.o RcppExports.o -fopenmp -LD:/RCompile/recent/R-4.4.2/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.2/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.2/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_11_19_01_50_00_21579/RtmpYFfmRU/R.INSTALLd898168f34a4/BayesReversePLLH/src'
make[1]: Entering directory '/d/temp/2024_11_19_01_50_00_21579/RtmpYFfmRU/R.INSTALLd898168f34a4/BayesReversePLLH/src'
make[1]: Leaving directory '/d/temp/2024_11_19_01_50_00_21579/RtmpYFfmRU/R.INSTALLd898168f34a4/BayesReversePLLH/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-BayesReversePLLH/00new/BayesReversePLLH/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'BayesReversePLLH' as BayesReversePLLH_1.5.zip
* DONE (BayesReversePLLH)