* installing *source* package 'BAS' ...
** package 'BAS' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
using Fortran compiler: 'GNU Fortran (GCC) 13.2.0'
make[1]: Entering directory '/d/temp/RtmpioiJtL/R.INSTALL21fc42fab1a1d/BAS/src'
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c E_ZS.c -o E_ZS.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MH-funs.c -o MH-funs.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ZS_approx_full_np.c -o ZS_approx_full_np.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ZS_approx_null_np.c -o ZS_approx_null_np.o
In file included from bas.h:12,
from ZS_approx_null_np.c:5:
mconf.h:96: warning: "DOMAIN" redefined
96 | #define DOMAIN 1 /* argument domain error */
|
In file included from D:/RCompile/recent/R-4.4.1/include/R.h:45,
from ZS_approx_null_np.c:1:
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:29: note: this is the location of the previous definition
29 | #define DOMAIN _DOMAIN
|
mconf.h:97: warning: "SING" redefined
97 | #define SING 2 /* argument singularity */
|
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:30: note: this is the location of the previous definition
30 | #define SING _SING
|
mconf.h:98: warning: "OVERFLOW" redefined
98 | #define OVERFLOW 3 /* overflow range error */
|
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:31: note: this is the location of the previous definition
31 | #define OVERFLOW _OVERFLOW
|
mconf.h:99: warning: "UNDERFLOW" redefined
99 | #define UNDERFLOW 4 /* underflow range error */
|
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:32: note: this is the location of the previous definition
32 | #define UNDERFLOW _UNDERFLOW
|
mconf.h:100: warning: "TLOSS" redefined
100 | #define TLOSS 5 /* total loss of precision */
|
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:33: note: this is the location of the previous definition
33 | #define TLOSS _TLOSS
|
mconf.h:101: warning: "PLOSS" redefined
101 | #define PLOSS 6 /* partial loss of precision */
|
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:34: note: this is the location of the previous definition
34 | #define PLOSS _PLOSS
|
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c amcmc-funs.c -o amcmc-funs.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bayesglm.c -o bayesglm.o
bayesglm.c: In function 'glm_fit':
bayesglm.c:214:17: warning: 'disp' may be used uninitialized [-Wmaybe-uninitialized]
214 | se[j] = sqrt(se[j]*disp);
| ^~~~~~~~~~~~~~~~
bayesglm.c:90:10: note: 'disp' was declared here
90 | double disp;
| ^~~~
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bayesreg.c -o bayesreg.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c betapriorfamily.c -o betapriorfamily.o
betapriorfamily.c: In function 'intrinsic_glm_shrinkage':
betapriorfamily.c:234:38: warning: unused variable 'u' [-Wunused-variable]
234 | double a, b, s, r, v, theta, n, p, u, shrinkage;
| ^
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cch.c -o cch.o
In file included from bas.h:12,
from cch.c:12:
mconf.h:96: warning: "DOMAIN" redefined
96 | #define DOMAIN 1 /* argument domain error */
|
In file included from D:/RCompile/recent/R-4.4.1/include/R.h:45,
from cch.c:8:
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:29: note: this is the location of the previous definition
29 | #define DOMAIN _DOMAIN
|
mconf.h:97: warning: "SING" redefined
97 | #define SING 2 /* argument singularity */
|
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:30: note: this is the location of the previous definition
30 | #define SING _SING
|
mconf.h:98: warning: "OVERFLOW" redefined
98 | #define OVERFLOW 3 /* overflow range error */
|
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:31: note: this is the location of the previous definition
31 | #define OVERFLOW _OVERFLOW
|
mconf.h:99: warning: "UNDERFLOW" redefined
99 | #define UNDERFLOW 4 /* underflow range error */
|
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:32: note: this is the location of the previous definition
32 | #define UNDERFLOW _UNDERFLOW
|
mconf.h:100: warning: "TLOSS" redefined
100 | #define TLOSS 5 /* total loss of precision */
|
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:33: note: this is the location of the previous definition
33 | #define TLOSS _TLOSS
|
mconf.h:101: warning: "PLOSS" redefined
101 | #define PLOSS 6 /* partial loss of precision */
|
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:34: note: this is the location of the previous definition
34 | #define PLOSS _PLOSS
|
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c const.c -o const.o
gfortran -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c dch1up.f -o dch1up.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c family.c -o family.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c glm_deterministic.c -o glm_deterministic.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c glm_fit.c -o glm_fit.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c glm_lpy.c -o glm_lpy.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c glm_mcmc.c -o glm_mcmc.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c glm_mcmcbas.c -o glm_mcmcbas.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c glm_sampleworep.c -o glm_sampleworep.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hg_approx_null_np.c -o hg_approx_null_np.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hyp1F1.c -o hyp1F1.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hyp2f1.c -o hyp2f1.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hypergeometric1F1.c -o hypergeometric1F1.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hypergeometric2F1.c -o hypergeometric2F1.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lm_amcmc.c -o lm_amcmc.o
lm_amcmc.c: In function 'amcmc':
lm_amcmc.c:255:34: warning: 'new_loc' may be used uninitialized [-Wmaybe-uninitialized]
255 | INTEGER(counts)[old_loc] += 1;
| ~~~~~~~~~~~~~~~^~~~~~~~~
lm_amcmc.c:160:13: note: 'new_loc' was declared here
160 | int new_loc;
| ^~~~~~~
lm_amcmc.c:352:34: warning: 'postold' may be used uninitialized [-Wmaybe-uninitialized]
352 | if (!IS) MH = exp(postnew - postold + log(pigammaold) - log(pigammanew));
| ~~~~~~~~^~~~~~~~~
lm_amcmc.c:45:46: note: 'postold' was declared here
45 | R2_m, RSquareFull, logmargy, postold, postnew;
| ^~~~~~~
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lm_deterministic.c -o lm_deterministic.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lm_mcmc.c -o lm_mcmc.o
lm_mcmc.c: In function 'mcmc_new':
lm_mcmc.c:221:34: warning: 'new_loc' may be used uninitialized [-Wmaybe-uninitialized]
221 | INTEGER(counts)[old_loc] += 1;
| ~~~~~~~~~~~~~~~^~~~~~~~~
lm_mcmc.c:127:13: note: 'new_loc' was declared here
127 | int new_loc;
| ^~~~~~~
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lm_mcmcbas.c -o lm_mcmcbas.o
lm_mcmcbas.c: In function 'mcmcbas':
lm_mcmcbas.c:278:22: warning: 'new_loc' may be used uninitialized [-Wmaybe-uninitialized]
278 | INTEGER(counts)[old_loc] += 1;
| ~~~~~~~~~~~~~~~^~~~~~~~~
lm_mcmcbas.c:176:9: note: 'new_loc' was declared here
176 | int new_loc;
| ^~~~~~~
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lm_sampleworep.c -o lm_sampleworep.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mem.c -o mem.o
In file included from bas.h:12,
from mem.c:5:
mconf.h:96: warning: "DOMAIN" redefined
96 | #define DOMAIN 1 /* argument domain error */
|
In file included from D:/RCompile/recent/R-4.4.1/include/R.h:45,
from mem.c:4:
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:29: note: this is the location of the previous definition
29 | #define DOMAIN _DOMAIN
|
mconf.h:97: warning: "SING" redefined
97 | #define SING 2 /* argument singularity */
|
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:30: note: this is the location of the previous definition
30 | #define SING _SING
|
mconf.h:98: warning: "OVERFLOW" redefined
98 | #define OVERFLOW 3 /* overflow range error */
|
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:31: note: this is the location of the previous definition
31 | #define OVERFLOW _OVERFLOW
|
mconf.h:99: warning: "UNDERFLOW" redefined
99 | #define UNDERFLOW 4 /* underflow range error */
|
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:32: note: this is the location of the previous definition
32 | #define UNDERFLOW _UNDERFLOW
|
mconf.h:100: warning: "TLOSS" redefined
100 | #define TLOSS 5 /* total loss of precision */
|
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:33: note: this is the location of the previous definition
33 | #define TLOSS _TLOSS
|
mconf.h:101: warning: "PLOSS" redefined
101 | #define PLOSS 6 /* partial loss of precision */
|
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:34: note: this is the location of the previous definition
34 | #define PLOSS _PLOSS
|
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c model_probabilities.c -o model_probabilities.o
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mtherr.c -o mtherr.o
In file included from mtherr.c:60:
mconf.h:96: warning: "DOMAIN" redefined
96 | #define DOMAIN 1 /* argument domain error */
|
In file included from D:/RCompile/recent/R-4.4.1/include/R.h:45,
from mtherr.c:59:
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:29: note: this is the location of the previous definition
29 | #define DOMAIN _DOMAIN
|
mconf.h:97: warning: "SING" redefined
97 | #define SING 2 /* argument singularity */
|
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:30: note: this is the location of the previous definition
30 | #define SING _SING
|
mconf.h:98: warning: "OVERFLOW" redefined
98 | #define OVERFLOW 3 /* overflow range error */
|
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:31: note: this is the location of the previous definition
31 | #define OVERFLOW _OVERFLOW
|
mconf.h:99: warning: "UNDERFLOW" redefined
99 | #define UNDERFLOW 4 /* underflow range error */
|
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:32: note: this is the location of the previous definition
32 | #define UNDERFLOW _UNDERFLOW
|
mconf.h:100: warning: "TLOSS" redefined
100 | #define TLOSS 5 /* total loss of precision */
|
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:33: note: this is the location of the previous definition
33 | #define TLOSS _TLOSS
|
mconf.h:101: warning: "PLOSS" redefined
101 | #define PLOSS 6 /* partial loss of precision */
|
D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:34: note: this is the location of the previous definition
34 | #define PLOSS _PLOSS
|
gcc -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tree_structures.c -o tree_structures.o
gcc -shared -s -static-libgcc -o BAS.dll tmp.def E_ZS.o MH-funs.o ZS_approx_full_np.o ZS_approx_null_np.o amcmc-funs.o bayesglm.o bayesreg.o betapriorfamily.o cch.o const.o dch1up.o family.o glm_deterministic.o glm_fit.o glm_lpy.o glm_mcmc.o glm_mcmcbas.o glm_sampleworep.o hg_approx_null_np.o hyp1F1.o hyp2f1.o hypergeometric1F1.o hypergeometric2F1.o init.o lm_amcmc.o lm_deterministic.o lm_mcmc.o lm_mcmcbas.o lm_sampleworep.o mem.o model_probabilities.o mtherr.o tree_structures.o -LD:/RCompile/recent/R-4.4.1/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.1/bin/x64 -lRblas -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -lgfortran -lm -lquadmath -LD:/RCompile/recent/R-4.4.1/bin/x64 -lR
make[1]: Leaving directory '/d/temp/RtmpioiJtL/R.INSTALL21fc42fab1a1d/BAS/src'
make[1]: Entering directory '/d/temp/RtmpioiJtL/R.INSTALL21fc42fab1a1d/BAS/src'
make[1]: Leaving directory '/d/temp/RtmpioiJtL/R.INSTALL21fc42fab1a1d/BAS/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-BAS/00new/BAS/libs/x64
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'BAS' as BAS_1.7.3.zip
* DONE (BAS)