* installing *source* package ‘xgboost’ ...
** package ‘xgboost’ successfully unpacked and MD5 sums checked
** using staged installation
checking Backtrace lib...
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether clang++ -arch x86_64 -std=gnu++17 accepts -g... yes
checking for clang++ -arch x86_64 -std=gnu++17 option to enable C++11 features... none needed
checking for backtrace in -lexecinfo... no
checking endian...
checking whether OpenMP will work in a package... no
*****************************************************************************************
OpenMP is unavailable on this Mac OSX system. Training speed may be suboptimal.
To use all CPU cores for training jobs, you should install OpenMP by running
brew install libomp
*****************************************************************************************
configure: creating ./config.status
config.status: creating src/Makevars
** libs
Makevars:17: -DXGBOOST_STRICT_R_MODE=1
Makevars:17: -DDMLC_LOG_BEFORE_THROW=0
Makevars:17: -DDMLC_ENABLE_STD_THREAD=1
Makevars:17: -DDMLC_DISABLE_STDIN=1
Makevars:17: -DDMLC_LOG_CUSTOMIZE=1
Makevars:17: -DXGBOOST_CUSTOMIZE_LOGGER=1
Makevars:17: -DRABIT_CUSTOMIZE_MSG_
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++17
using SDK: ‘MacOSX11.3.sdk’
Makevars:17: -DXGBOOST_STRICT_R_MODE=1
Makevars:17: -DDMLC_LOG_BEFORE_THROW=0
Makevars:17: -DDMLC_ENABLE_STD_THREAD=1
Makevars:17: -DDMLC_DISABLE_STDIN=1
Makevars:17: -DDMLC_LOG_CUSTOMIZE=1
Makevars:17: -DXGBOOST_CUSTOMIZE_LOGGER=1
Makevars:17: -DRABIT_CUSTOMIZE_MSG_
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c xgboost_R.cc -o xgboost_R.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c xgboost_custom.cc -o xgboost_custom.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/metric/metric.cc -o src/metric/metric.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/metric/elementwise_metric.cc -o src/metric/elementwise_metric.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/metric/multiclass_metric.cc -o src/metric/multiclass_metric.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/metric/rank_metric.cc -o src/metric/rank_metric.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/metric/auc.cc -o src/metric/auc.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/metric/survival_metric.cc -o src/metric/survival_metric.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/objective/objective.cc -o src/objective/objective.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/objective/regression_obj.cc -o src/objective/regression_obj.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/objective/multiclass_obj.cc -o src/objective/multiclass_obj.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/objective/rank_obj.cc -o src/objective/rank_obj.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/objective/hinge.cc -o src/objective/hinge.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/objective/aft_obj.cc -o src/objective/aft_obj.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/objective/adaptive.cc -o src/objective/adaptive.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/gbm/gbm.cc -o src/gbm/gbm.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/gbm/gbtree.cc -o src/gbm/gbtree.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/gbm/gbtree_model.cc -o src/gbm/gbtree_model.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/gbm/gblinear.cc -o src/gbm/gblinear.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/gbm/gblinear_model.cc -o src/gbm/gblinear_model.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/data/simple_dmatrix.cc -o src/data/simple_dmatrix.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/data/data.cc -o src/data/data.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/data/sparse_page_raw_format.cc -o src/data/sparse_page_raw_format.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/data/ellpack_page.cc -o src/data/ellpack_page.o
In file included from src/data/data.cc:22:
In file included from src/data/./sparse_page_dmatrix.h:19:
In file included from src/data/ellpack_page_source.h:15:
In file included from src/data/sparse_page_source.h:21:
In file included from src/data/sparse_page_writer.h:20:
./dmlc-core/include/dmlc/concurrency.h:36:22: warning: braces around scalar initializer [-Wbraced-scalar-init]
Spinlock() : lock_(ATOMIC_FLAG_INIT) {
^~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/atomic:2788:26: note: expanded from macro 'ATOMIC_FLAG_INIT'
#define ATOMIC_FLAG_INIT {false}
^~~~~~~
In file included from src/data/sparse_page_raw_format.cc:10:
In file included from src/data/./sparse_page_writer.h:20:
./dmlc-core/include/dmlc/concurrency.h:36:22: warning: braces around scalar initializer [-Wbraced-scalar-init]
Spinlock() : lock_(ATOMIC_FLAG_INIT) {
^~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/atomic:2788:26: note: expanded from macro 'ATOMIC_FLAG_INIT'
#define ATOMIC_FLAG_INIT {false}
^~~~~~~
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/data/gradient_index.cc -o src/data/gradient_index.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/data/gradient_index_page_source.cc -o src/data/gradient_index_page_source.o
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/data/gradient_index_format.cc -o src/data/gradient_index_format.o
In file included from src/data/gradient_index_page_source.cc:4:
In file included from src/data/gradient_index_page_source.h:11:
In file included from src/data/sparse_page_source.h:21:
In file included from src/data/sparse_page_writer.h:20:
./dmlc-core/include/dmlc/concurrency.h:36:22: warning: braces around scalar initializer [-Wbraced-scalar-init]
Spinlock() : lock_(ATOMIC_FLAG_INIT) {
^~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/atomic:2788:26: note: expanded from macro 'ATOMIC_FLAG_INIT'
#define ATOMIC_FLAG_INIT {false}
^~~~~~~
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/data/sparse_page_dmatrix.cc -o src/data/sparse_page_dmatrix.o
In file included from src/data/gradient_index_format.cc:4:
In file included from src/data/sparse_page_writer.h:20:
./dmlc-core/include/dmlc/concurrency.h:36:22: warning: braces around scalar initializer [-Wbraced-scalar-init]
Spinlock() : lock_(ATOMIC_FLAG_INIT) {
^~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/atomic:2788:26: note: expanded from macro 'ATOMIC_FLAG_INIT'
#define ATOMIC_FLAG_INIT {false}
^~~~~~~
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/data/proxy_dmatrix.cc -o src/data/proxy_dmatrix.o
In file included from src/data/sparse_page_dmatrix.cc:7:
In file included from src/data/./sparse_page_dmatrix.h:19:
In file included from src/data/ellpack_page_source.h:15:
In file included from src/data/sparse_page_source.h:21:
In file included from src/data/sparse_page_writer.h:20:
./dmlc-core/include/dmlc/concurrency.h:36:22: warning: braces around scalar initializer [-Wbraced-scalar-init]
Spinlock() : lock_(ATOMIC_FLAG_INIT) {
^~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/atomic:2788:26: note: expanded from macro 'ATOMIC_FLAG_INIT'
#define ATOMIC_FLAG_INIT {false}
^~~~~~~
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/data/iterative_dmatrix.cc -o src/data/iterative_dmatrix.o
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/predictor/predictor.cc -o src/predictor/predictor.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/predictor/cpu_predictor.cc -o src/predictor/cpu_predictor.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/tree/constraints.cc -o src/tree/constraints.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/tree/param.cc -o src/tree/param.o
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/tree/tree_model.cc -o src/tree/tree_model.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/tree/tree_updater.cc -o src/tree/tree_updater.o
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/tree/updater_approx.cc -o src/tree/updater_approx.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/tree/updater_colmaker.cc -o src/tree/updater_colmaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/tree/updater_prune.cc -o src/tree/updater_prune.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/tree/updater_quantile_hist.cc -o src/tree/updater_quantile_hist.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/tree/updater_refresh.cc -o src/tree/updater_refresh.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/tree/updater_sync.cc -o src/tree/updater_sync.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/linear/linear_updater.cc -o src/linear/linear_updater.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/linear/updater_coordinate.cc -o src/linear/updater_coordinate.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/linear/updater_shotgun.cc -o src/linear/updater_shotgun.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/learner.cc -o src/learner.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/logging.cc -o src/logging.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/global_config.cc -o src/global_config.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/collective/communicator.cc -o src/collective/communicator.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/collective/socket.cc -o src/collective/socket.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/common/charconv.cc -o src/common/charconv.o
In file included from src/collective/socket.cc:4:
./include/xgboost/collective/socket.h:267:10: warning: unused variable 'ret_iafamily' [-Wunused-variable]
auto ret_iafamily = [](std::int32_t domain) {
^
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/common/column_matrix.cc -o src/common/column_matrix.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/common/common.cc -o src/common/common.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/common/hist_util.cc -o src/common/hist_util.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/common/host_device_vector.cc -o src/common/host_device_vector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/common/io.cc -o src/common/io.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/common/json.cc -o src/common/json.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/common/numeric.cc -o src/common/numeric.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/common/pseudo_huber.cc -o src/common/pseudo_huber.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/common/quantile.cc -o src/common/quantile.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/common/random.cc -o src/common/random.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/common/survival_util.cc -o src/common/survival_util.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/common/threading_utils.cc -o src/common/threading_utils.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/common/timer.cc -o src/common/timer.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/common/version.cc -o src/common/version.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/c_api/c_api.cc -o src/c_api/c_api.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c src/c_api/c_api_error.cc -o src/c_api/c_api_error.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c amalgamation/dmlc-minimum0.cc -o amalgamation/dmlc-minimum0.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c rabit/src/engine.cc -o rabit/src/engine.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c rabit/src/rabit_c_api.cc -o rabit/src/rabit_c_api.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/opt/R/x86_64/include -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fPIC -falign-functions=64 -Wall -g -O2 -c rabit/src/allreduce_base.cc -o rabit/src/allreduce_base.o
In file included from rabit/src/engine.cc:14:
In file included from rabit/src/allreduce_base.h:22:
In file included from ./rabit/include/rabit/internal/socket.h:8:
./include/xgboost/collective/socket.h:267:10: warning: unused variable 'ret_iafamily' [-Wunused-variable]
auto ret_iafamily = [](std::int32_t domain) {
^
1 warning generated.
In file included from rabit/src/allreduce_base.cc:14:
In file included from rabit/src/allreduce_base.h:22:
In file included from ./rabit/include/rabit/internal/socket.h:8:
./include/xgboost/collective/socket.h:267:10: warning: unused variable 'ret_iafamily' [-Wunused-variable]
auto ret_iafamily = [](std::int32_t domain) {
^
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o xgboost.so ./xgboost_R.o ./xgboost_custom.o ./init.o ./src/metric/metric.o ./src/metric/elementwise_metric.o ./src/metric/multiclass_metric.o ./src/metric/rank_metric.o ./src/metric/auc.o ./src/metric/survival_metric.o ./src/objective/objective.o ./src/objective/regression_obj.o ./src/objective/multiclass_obj.o ./src/objective/rank_obj.o ./src/objective/hinge.o ./src/objective/aft_obj.o ./src/objective/adaptive.o ./src/gbm/gbm.o ./src/gbm/gbtree.o ./src/gbm/gbtree_model.o ./src/gbm/gblinear.o ./src/gbm/gblinear_model.o ./src/data/simple_dmatrix.o ./src/data/data.o ./src/data/sparse_page_raw_format.o ./src/data/ellpack_page.o ./src/data/gradient_index.o ./src/data/gradient_index_page_source.o ./src/data/gradient_index_format.o ./src/data/sparse_page_dmatrix.o ./src/data/proxy_dmatrix.o ./src/data/iterative_dmatrix.o ./src/predictor/predictor.o ./src/predictor/cpu_predictor.o ./src/tree/constraints.o ./src/tree/param.o ./src/tree/tree_model.o ./src/tree/tree_updater.o ./src/tree/updater_approx.o ./src/tree/updater_colmaker.o ./src/tree/updater_prune.o ./src/tree/updater_quantile_hist.o ./src/tree/updater_refresh.o ./src/tree/updater_sync.o ./src/linear/linear_updater.o ./src/linear/updater_coordinate.o ./src/linear/updater_shotgun.o ./src/learner.o ./src/logging.o ./src/global_config.o ./src/collective/communicator.o ./src/collective/socket.o ./src/common/charconv.o ./src/common/column_matrix.o ./src/common/common.o ./src/common/hist_util.o ./src/common/host_device_vector.o ./src/common/io.o ./src/common/json.o ./src/common/numeric.o ./src/common/pseudo_huber.o ./src/common/quantile.o ./src/common/random.o ./src/common/survival_util.o ./src/common/threading_utils.o ./src/common/timer.o ./src/common/version.o ./src/c_api/c_api.o ./src/c_api/c_api_error.o ./amalgamation/dmlc-minimum0.o ./rabit/src/engine.o ./rabit/src/rabit_c_api.o ./rabit/src/allreduce_base.o -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
Makevars:17: -DXGBOOST_STRICT_R_MODE=1
Makevars:17: -DDMLC_LOG_BEFORE_THROW=0
Makevars:17: -DDMLC_ENABLE_STD_THREAD=1
Makevars:17: -DDMLC_DISABLE_STDIN=1
Makevars:17: -DDMLC_LOG_CUSTOMIZE=1
Makevars:17: -DXGBOOST_CUSTOMIZE_LOGGER=1
Makevars:17: -DRABIT_CUSTOMIZE_MSG_
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/xgboost.Rcheck/00LOCK-xgboost/00new/xgboost/libs
** generating debug symbols (dSYM)
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (xgboost)