- using R version 4.4.1 (2024-06-14)
- using platform: x86_64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘worcs/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘worcs’ version ‘0.1.17’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘worcs’ can be installed ... [8s/10s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s/3s] OK
- checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
- checking whether the package can be unloaded cleanly ... [3s/4s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
- checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
- checking loading without being on the library search path ... [3s/4s] OK
- checking whether startup messages can be suppressed ... [3s/4s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [9s/11s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [5s/7s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [29s/34s] ERROR
Running ‘testthat.R’ [29s/34s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(worcs)
Welcome to WORCS: Workflow for Open Reproducible Code in Science. Run `check_worcs_installation()` to make sure all dependencies are installed. For more information, see the package vignettes (<https://cjvanlissa.github.io/worcs/articles>) and accompanying paper: Van Lissa and colleagues (2020) (<https://doi.org/10.3233/DS-210031>)
>
> test_check("worcs")
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Error: object 'test' not found
Execution halted
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Variables to impute: Sepal.Length, Petal.Length, Species, Petal.Width, Sepal.Width
Variables used to impute: Sepal.Length, Sepal.Width, Petal.Length, Petal.Width, Species
iter 1
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iter 2
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iter 3
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iter 4
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[ FAIL 1 | WARN 0 | SKIP 9 | PASS 154 ]
══ Skipped tests (9) ═══════════════════════════════════════════════════════════
• Version of Pandoc is lower than 2.0. (4): 'test-checksum_markdown.R:3:3',
'test-citations.R:4:3', 'test-targets.R:4:5', 'test-targets.R:55:5'
• empty test (5): 'test-citations.R:33:1', 'test-citations.R:67:1',
'test-citations.R:111:1', 'test-codebook.R:1:1', 'test-codebook.R:24:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-dir_of_save_data.R:29:3'): data stored in correct dir ────────
all(sapply(f, file.exists)) is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 1 | WARN 0 | SKIP 9 | PASS 154 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [44s/61s] OK
- checking PDF version of manual ... [8s/11s] OK
- DONE
Status: 1 ERROR
- using check arguments '--no-clean-on-error '