- using R version 4.4.0 (2024-04-24)
- using platform: x86_64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘urbin/DESCRIPTION’ ... OK
- this is package ‘urbin’ version ‘0.1-12’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘urbin’ can be installed ... [2s/2s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [3s/3s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [2s/2s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [26s/28s] OK
Running ‘logit.R’ [2s/2s]
Comparing ‘logit.Rout’ to ‘logit.Rout.save’ ...39a40,43
> Deviance Residuals:
> Min 1Q Median 3Q Max
> -1.873 -1.232 0.803 1.056 1.587
>
137a142,145
> Deviance Residuals:
> Min 1Q Median 3Q Max
> -1.899 -1.232 0.789 1.051 1.649
>
292a301,304
>
> Deviance Residuals:
> Min 1Q Median 3Q Max
> -1.874 -1.216 0.805 1.067 1.722
Running ‘logitEffCat.R’ [0s/0s]
Comparing ‘logitEffCat.Rout’ to ‘logitEffCat.Rout.save’ ... OK
Running ‘logitEffInt.R’ [0s/0s]
Comparing ‘logitEffInt.Rout’ to ‘logitEffInt.Rout.save’ ... OK
Running ‘logitEla.R’ [0s/0s]
Comparing ‘logitEla.Rout’ to ‘logitEla.Rout.save’ ... OK
Running ‘logitElaInt.R’ [0s/0s]
Comparing ‘logitElaInt.Rout’ to ‘logitElaInt.Rout.save’ ... OK
Running ‘lpm.R’ [2s/2s]
Comparing ‘lpm.Rout’ to ‘lpm.Rout.save’ ... OK
Running ‘mlogit.R’ [4s/4s]
Comparing ‘mlogit.Rout’ to ‘mlogit.Rout.save’ ... OK
Running ‘mvprobit.R’ [13s/14s]
Comparing ‘mvprobit.Rout’ to ‘mvprobit.Rout.save’ ... OK
Running ‘oprobit.R’ [2s/2s]
Comparing ‘oprobit.Rout’ to ‘oprobit.Rout.save’ ... OK
Running ‘probit.R’ [2s/2s]
Comparing ‘probit.Rout’ to ‘probit.Rout.save’ ...39a40,43
> Deviance Residuals:
> Min 1Q Median 3Q Max
> -1.895 -1.234 0.802 1.059 1.589
>
137a142,145
> Deviance Residuals:
> Min 1Q Median 3Q Max
> -1.927 -1.231 0.785 1.053 1.654
>
292a301,304
>
> Deviance Residuals:
> Min 1Q Median 3Q Max
> -1.897 -1.215 0.804 1.069 1.729
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [26s/27s] WARNING
Error(s) in re-building vignettes:
--- re-building ‘ExtendedAppendix.Rnw’ using knitr
Error: processing vignette 'ExtendedAppendix.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'ExtendedAppendix.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.215 \hldef
{linEla} \hlkwb{<-} \hlkwa{function}\hldef{(} \hlkwc{xCoef}\hlde...
?
! Emergency stop.
l.215
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘ExtendedAppendix.Rnw’
--- re-building ‘Manuscript.Rnw’ using knitr
Error: processing vignette 'Manuscript.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'Manuscript.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.648 \hlkwd{urbinEla}\hldef
{(} \hlkwd{coef}\hldef{(estProbit), xMean,} \hlk...
?
! Emergency stop.
l.648
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘Manuscript.Rnw’
SUMMARY: processing the following files failed:
‘ExtendedAppendix.Rnw’ ‘Manuscript.Rnw’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [6s/6s] OK
- DONE
Status: 1 WARNING
- using check arguments '--no-clean-on-error '