Install log for 'shrinkTVP'

* installing *source* package ‘shrinkTVP’ ...
** package ‘shrinkTVP’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/GIGrvg/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/stochvol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppGSL/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c DG_MH_step.cpp -o DG_MH_step.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/GIGrvg/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/stochvol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppGSL/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c DG_log_ratio_value.cpp -o DG_log_ratio_value.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/GIGrvg/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/stochvol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppGSL/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c DG_sampling_functions.cpp -o DG_sampling_functions.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/GIGrvg/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/stochvol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppGSL/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c R_utilities.cpp -o R_utilities.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/GIGrvg/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/stochvol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppGSL/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c TG_MH_step.cpp -o TG_MH_step.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/GIGrvg/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/stochvol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppGSL/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c TG_log_ratio_value.cpp -o TG_log_ratio_value.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/GIGrvg/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/stochvol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppGSL/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c TG_sampling_functions.cpp -o TG_sampling_functions.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/GIGrvg/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/stochvol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppGSL/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c common_sampling_functions.cpp -o common_sampling_functions.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/GIGrvg/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/stochvol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppGSL/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c cpp_utilities.cpp -o cpp_utilities.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/GIGrvg/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/stochvol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppGSL/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c do_rgig1.cpp -o do_rgig1.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/GIGrvg/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/stochvol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppGSL/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c dyn_sampling_steps.cpp -o dyn_sampling_steps.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/GIGrvg/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/stochvol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppGSL/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c exports.cpp -o exports.o
do_rgig1.cpp:20:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  int count = 0;
      ^
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/GIGrvg/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/stochvol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppGSL/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c rho_p_MH_step.cpp -o rho_p_MH_step.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/GIGrvg/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/stochvol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppGSL/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c sample_DG_TVP.cpp -o sample_DG_TVP.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/GIGrvg/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/stochvol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppGSL/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c sample_TG_TVP.cpp -o sample_TG_TVP.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/GIGrvg/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/stochvol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppGSL/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c sample_beta_McCausland.cpp -o sample_beta_McCausland.o
rho_p_MH_step.cpp:26:10: warning: unused variable 'lone_minus_prop' [-Wunused-variable]
  double lone_minus_prop = std::log(1 - proposal);
         ^
rho_p_MH_step.cpp:27:10: warning: unused variable 'lone_minus_old' [-Wunused-variable]
  double lone_minus_old = std::log(1 - old_val);
         ^
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/GIGrvg/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/stochvol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppGSL/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c sample_beta_McCausland_dyn.cpp -o sample_beta_McCausland_dyn.o
2 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/GIGrvg/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/stochvol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppGSL/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c shrinkDTVP.cpp -o shrinkDTVP.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/GIGrvg/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/stochvol/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppGSL/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c shrinkTVP.cpp -o shrinkTVP.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o shrinkTVP.so DG_MH_step.o DG_log_ratio_value.o DG_sampling_functions.o R_utilities.o TG_MH_step.o TG_log_ratio_value.o TG_sampling_functions.o common_sampling_functions.o cpp_utilities.o do_rgig1.o dyn_sampling_steps.o exports.o rho_p_MH_step.o sample_DG_TVP.o sample_TG_TVP.o sample_beta_McCausland.o sample_beta_McCausland_dyn.o shrinkDTVP.o shrinkTVP.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -L/opt/R/x86_64/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/shrinkTVP.Rcheck/00LOCK-shrinkTVP/00new/shrinkTVP/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (shrinkTVP)