Install log for 'scellpam'

* installing *source* package ‘scellpam’ ...
** package ‘scellpam’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c biodatatojmat.cpp -o biodatatojmat.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c buildresults.cpp -o buildresults.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c csvtojmat.cpp -o csvtojmat.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c debugpar.cpp -o debugpar.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c diftimehelper.cpp -o diftimehelper.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c dissimmat.cpp -o dissimmat.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c dissimmat_full.cpp -o dissimmat_full.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c dissimmat_sparse.cpp -o dissimmat_sparse.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c fastpam.cpp -o fastpam.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c filternames.cpp -o filternames.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c filtersil.cpp -o filtersil.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c fullmatrix.cpp -o fullmatrix.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c jmatrix.cpp -o jmatrix.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c jmatrixaux.cpp -o jmatrixaux.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c mainfastpam.cpp -o mainfastpam.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c matgetcols.cpp -o matgetcols.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c matgetdiag.cpp -o matgetdiag.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c matgetrows.cpp -o matgetrows.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c matinfo.cpp -o matinfo.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c matmetadata.cpp -o matmetadata.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c matwrite.cpp -o matwrite.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c memhelper.cpp -o memhelper.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c silhouette.cpp -o silhouette.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c sparsematrix.cpp -o sparsematrix.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c symmetricmatrix.cpp -o symmetricmatrix.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include   -I../inst/include -fPIC  -falign-functions=64 -Wall -g -O2   -c threadhelper.cpp -o threadhelper.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o scellpam.so RcppExports.o biodatatojmat.o buildresults.o csvtojmat.o debugpar.o diftimehelper.o dissimmat.o dissimmat_full.o dissimmat_sparse.o fastpam.o filternames.o filtersil.o fullmatrix.o jmatrix.o jmatrixaux.o mainfastpam.o matgetcols.o matgetdiag.o matgetrows.o matinfo.o matmetadata.o matwrite.o memhelper.o silhouette.o sparsematrix.o symmetricmatrix.o threadhelper.o -lpthread -O2 -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/scellpam.Rcheck/00LOCK-scellpam/00new/scellpam/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scellpam)