* installing *source* package ‘rxode2ll’ ... ** package ‘rxode2ll’ successfully unpacked and MD5 sums checked ** using staged installation --------[begin src/Makevars]-------- # -*- mode: makefile-gmake -*- BH=/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include RCPP=/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include EG=/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include SH=-I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src' CXX_STD = CXX17 ################################################################################ ## Package library flags. PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(SHLIB_OPENMP_CXXFLAGS) -L'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/lib/' -Wl,-rpath,'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/lib/' -ltbb -ltbbmalloc -L/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/lib -ltbb -ltbbmalloc # Release options PKG_CFLAGS = -D_isrxode2parse_ PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"$(BH)" -I"$(EG)" $(SH) -I"$(RCPP)" --------[end src/Makevars]-------- ** libs using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using C++17 using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src' -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include" -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -D_isrxode2parse_ -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src' -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include" -fPIC -falign-functions=64 -Wall -g -O2 -c llikBeta.cpp -o llikBeta.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src' -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include" -fPIC -falign-functions=64 -Wall -g -O2 -c llikBinom.cpp -o llikBinom.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src' -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include" -fPIC -falign-functions=64 -Wall -g -O2 -c llikCauchy.cpp -o llikCauchy.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src' -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include" -fPIC -falign-functions=64 -Wall -g -O2 -c llikChisq.cpp -o llikChisq.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src' -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include" -fPIC -falign-functions=64 -Wall -g -O2 -c llikExp.cpp -o llikExp.o In file included from llikBinom.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from llikBinom.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from llikCauchy.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from llikChisq.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from llikBeta.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from llikChisq.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from llikCauchy.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from llikBeta.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from llikExp.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from llikExp.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from llikBinom.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct In file included from llikChisq.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct In file included from llikCauchy.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct In file included from llikBeta.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct In file included from llikExp.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct 5 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src' -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include" -fPIC -falign-functions=64 -Wall -g -O2 -c llikF.cpp -o llikF.o In file included from llikF.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from llikF.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from llikF.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct In file included from llikBinom.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from llikCauchy.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from llikBinom.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from llikChisq.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from llikExp.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from llikBeta.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from llikCauchy.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from llikChisq.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from llikExp.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from llikBeta.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from llikBinom.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ In file included from llikCauchy.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ In file included from llikChisq.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ In file included from llikExp.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ In file included from llikBeta.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ In file included from llikF.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from llikF.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from llikF.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ 7 warnings generated. 7 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src' -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include" -fPIC -falign-functions=64 -Wall -g -O2 -c llikGamma.cpp -o llikGamma.o 7 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src' -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include" -fPIC -falign-functions=64 -Wall -g -O2 -c llikGeom.cpp -o llikGeom.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src' -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include" -fPIC -falign-functions=64 -Wall -g -O2 -c llikNbinom.cpp -o llikNbinom.o 7 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src' -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include" -fPIC -falign-functions=64 -Wall -g -O2 -c llikNbinom2.cpp -o llikNbinom2.o 7 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src' -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include" -fPIC -falign-functions=64 -Wall -g -O2 -c llikNorm.cpp -o llikNorm.o In file included from llikGamma.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from llikGamma.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from llikNbinom.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from llikGeom.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from llikNbinom.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from llikGeom.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from llikNbinom2.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from llikNbinom2.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from llikNorm.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from llikNorm.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from llikGamma.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct In file included from llikGeom.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct In file included from llikNbinom.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct In file included from llikNbinom2.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct In file included from llikNorm.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct 7 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src' -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include" -fPIC -falign-functions=64 -Wall -g -O2 -c llikPois.cpp -o llikPois.o In file included from llikPois.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from llikPois.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from llikPois.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct In file included from llikGamma.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from llikGeom.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from llikNbinom.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from llikNbinom2.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from llikGamma.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from llikGeom.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from llikNbinom.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from llikNbinom2.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from llikNorm.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from llikNorm.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from llikGamma.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ In file included from llikGeom.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ In file included from llikNbinom.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ In file included from llikNbinom2.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ In file included from llikNorm.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ In file included from llikPois.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from llikPois.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from llikPois.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ 7 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src' -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include" -fPIC -falign-functions=64 -Wall -g -O2 -c llikT.cpp -o llikT.o 7 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src' -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include" -fPIC -falign-functions=64 -Wall -g -O2 -c llikUnif.cpp -o llikUnif.o 7 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/src' -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include" -fPIC -falign-functions=64 -Wall -g -O2 -c llikWeibull.cpp -o llikWeibull.o 7 warnings generated. 7 warnings generated. In file included from llikT.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from llikT.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from llikUnif.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from llikUnif.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from llikWeibull.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from llikWeibull.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from llikT.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> { ^ In file included from llikUnif.cpp/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here?:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct class ops_partials_edge; ^~~~~ struct In file included from llikWeibull.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct 7 warnings generated. In file included from llikUnif.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from llikT.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from llikUnif.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from llikT.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from llikWeibull.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from llikWeibull.cpp:1: In file included from ./llik2.h:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from llikUnif.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ In file included from llikT.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ In file included from llikWeibull.cpp:1: In file included from ./llik2.h:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math.hpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun.hpp:56: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/elt_multiply.hpp:9: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/rev/fun/multiply.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ 7 warnings generated. 7 warnings generated. 7 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o rxode2ll.so RcppExports.o init.o llikBeta.o llikBinom.o llikCauchy.o llikChisq.o llikExp.o llikF.o llikGamma.o llikGeom.o llikNbinom.o llikNbinom2.o llikNorm.o llikPois.o llikT.o llikUnif.o llikWeibull.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -L/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/lib/ -Wl,-rpath,/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/lib/ -ltbb -ltbbmalloc -L/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/rxode2ll.Rcheck/00LOCK-rxode2ll/00new/rxode2ll/libs ** generating debug symbols (dSYM) ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rxode2ll)