* using log directory ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.4/rNeighborQTL.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.3.1
* using session charset: UTF-8
* checking for file ‘rNeighborQTL/DESCRIPTION’ ... OK
* this is package ‘rNeighborQTL’ version ‘1.1.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rNeighborQTL’ can be installed ... [5s/5s] OK
See 'https://www.r-project.org/nosvn/R.check/r-release-macos-x86_64/rNeighborQTL-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [4s/5s] OK
* checking Rd files ... [0s/1s] NOTE
checkRd: (-1) calc_pve.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calc_pve.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calc_pve.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) calc_pve.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decompose_genoprobs.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decompose_genoprobs.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decompose_genoprobs.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eff_neighbor.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eff_neighbor.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eff_neighbor.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eff_neighbor.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eff_neighbor.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eff_neighbor.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) int_neighbor.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) int_neighbor.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) int_neighbor.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) scan_neighbor.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) scan_neighbor.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) scan_neighbor.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) scan_neighbor.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_nei_qtl.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_nei_qtl.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_nei_qtl.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [3s/6s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [7s/12s] OK
  Running ‘testthat.R’ [7s/12s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [55s/57s] OK
* checking PDF version of manual ... [6s/6s] OK
* DONE
Status: 1 NOTE
* using check arguments '--no-clean-on-error '

* elapsed time (check, wall clock): 2:09