- using R version 4.4.0 (2024-04-24)
- using platform: x86_64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘qbld/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘qbld’ version ‘1.0.3’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘qbld’ can be installed ... [82s/33s] OK
See the install log for details.
- used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
- used SDK: ‘MacOSX11.3.sdk’
- checking installed package size ... NOTE
installed size is 6.2Mb
sub-directories of 1Mb or more:
libs 5.8Mb
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking whether startup messages can be suppressed ... [1s/1s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [2s/3s] OK
- checking Rd files ... [0s/0s] NOTE
checkRd: (-1) aldmix.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aldmix.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aldmix.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aldmix.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gig.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gig.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) model.qbld.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) model.qbld.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) model.qbld.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) model.qbld.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) model.qbld.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) model.qbld.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qbld-package.Rd:24: Lost braces; missing escapes or markup?
24 | \item \code{\link{model.qbld}} {: Runs the QBLD sampler as in Rahman and Vossmeyer(2019) and outputs a `qbld' class object.}
| ^
checkRd: (-1) qbld-package.Rd:25: Lost braces; missing escapes or markup?
25 | \item \code{\link{summary.qbld}} {: S3 method that summarizes the outputs of the model.qbld function.}
| ^
checkRd: (-1) qbld-package.Rd:26: Lost braces; missing escapes or markup?
26 | \item \code{\link{plot.qbld}} {: S3 method that plots `qbld' class object. }
| ^
checkRd: (-1) qbld-package.Rd:27: Lost braces; missing escapes or markup?
27 | \item \code{\link{aldmix}} {: Cumulative density, probability distribution function, quantile function and random generation for the asymmetric Laplace distribution.}
| ^
checkRd: (-1) qbld-package.Rd:28: Lost braces; missing escapes or markup?
28 | \item \code{\link{gig}} {: Probability distribution function, random generation for the generalised inverse Gaussian.}
| ^
checkRd: (-1) qbld-package.Rd:29: Lost braces; missing escapes or markup?
29 | \item \code{\link{airpollution}}, \code{\link{locust}} {: In-built datasets}
| ^
checkRd: (-1) summary.qbld.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary.qbld.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary.qbld.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary.qbld.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary.qbld.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary.qbld.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary.qbld.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary.qbld.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking compiled code ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [1s/1s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [14s/17s] WARNING
Error(s) in re-building vignettes:
...
--- re-building ‘qbld.Rnw’ using knitr
Error: processing vignette 'qbld.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'qbld.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.138 \hlkwd{set.seed}\hldef
{(}\hlnum{10}\hldef{)}
?
! Emergency stop.
! Emergency stop.
l.138
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘qbld.Rnw’
SUMMARY: processing the following file failed:
‘qbld.Rnw’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [6s/7s] OK
- DONE
Status: 1 WARNING, 2 NOTEs
- using check arguments '--no-clean-on-error '