* using log directory ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.4/pulseTD.Rcheck’
* using R Under development (unstable) (2024-01-17 r85813)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.3.1
* using session charset: UTF-8
* checking for file ‘pulseTD/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pulseTD’ version ‘0.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pulseTD’ can be installed ... [32s/68s] OK
See 'https://www.r-project.org/nosvn/R.check/r-release-macos-x86_64/pulseTD-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [10s/21s] OK
* checking whether the package can be loaded with stated dependencies ... [10s/21s] OK
* checking whether the package can be unloaded cleanly ... [10s/21s] OK
* checking whether the namespace can be loaded with stated dependencies ... [10s/22s] OK
* checking whether the namespace can be unloaded cleanly ... [10s/20s] OK
* checking loading without being on the library search path ... [10s/21s] OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [22s/44s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [10s/19s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [11s/20s] ERROR
Running examples in ‘pulseTD-Ex.R’ failed
The error most likely occurred in:

> ### Name: estimateExpression
> ### Title: Estimated Expression
> ### Aliases: estimateExpression
> 
> ### ** Examples
> 
> library(TxDb.Hsapiens.UCSC.hg19.knownGene)
Error in library(TxDb.Hsapiens.UCSC.hg19.knownGene) : 
  there is no package called ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [18s/35s] ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘tutorial.Rmd’ using rmarkdown

Quitting from lines  at lines 63-65 [import packages] (tutorial.Rmd)
Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
there is no package called 'TxDb.Hsapiens.UCSC.hg19.knownGene'
--- failed re-building ‘tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [6s/11s] OK
* DONE
Status: 2 ERRORs, 1 NOTE
* using check arguments '--no-clean-on-error '

* elapsed time (check, wall clock): 9:10