* installing *source* package ‘plmmr’ ...
** package ‘plmmr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/bigmemory/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c big_crossprod.cpp -o big_crossprod.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/bigmemory/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c big_sd.cpp -o big_sd.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/bigmemory/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c big_standardize.cpp -o big_standardize.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/bigmemory/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c plmm_init.c -o plmm_init.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/bigmemory/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c standardize.cpp -o standardize.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/bigmemory/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c utilities.cpp -o utilities.o
In file included from big_sd.cpp:1:
In file included from ./utilities.h:8:
./plmmr_omp.h:8:9: warning: Warning: OpenMP is not available, project will be compiled into single-thread code. Use OpenMP-enabled compiler to get benefit of multi-threading. [-W#pragma-messages]
#pragma message("Warning: OpenMP is not available, " \
^
In file included from big_standardize.cpp:1:
In file included from ./utilities.h:8:
./plmmr_omp.h:8:9: warning: Warning: OpenMP is not available, project will be compiled into single-thread code. Use OpenMP-enabled compiler to get benefit of multi-threading. [-W#pragma-messages]
#pragma message("Warning: OpenMP is not available, " \
^
In file included from big_crossprod.cpp:1:
In file included from ./utilities.h:8:
./plmmr_omp.h:8:9: warning: Warning: OpenMP is not available, project will be compiled into single-thread code. Use OpenMP-enabled compiler to get benefit of multi-threading. [-W#pragma-messages]
#pragma message("Warning: OpenMP is not available, " \
^
In file included from utilities.cpp:1:
In file included from ./utilities.h:8:
./plmmr_omp.h:8:9: warning: Warning: OpenMP is not available, project will be compiled into single-thread code. Use OpenMP-enabled compiler to get benefit of multi-threading. [-W#pragma-messages]
#pragma message("Warning: OpenMP is not available, " \
^
In file included from standardize.cpp:1:
In file included from ./utilities.h:8:
./plmmr_omp.h:8:9: warning: Warning: OpenMP is not available, project will be compiled into single-thread code. Use OpenMP-enabled compiler to get benefit of multi-threading. [-W#pragma-messages]
#pragma message("Warning: OpenMP is not available, " \
^
1 warning generated.
1 warning generated.
1 warning generated.
1 warning generated.
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o plmmr.so big_crossprod.o big_sd.o big_standardize.o plmm_init.o standardize.o utilities.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/plmmr.Rcheck/00LOCK-plmmr/00new/plmmr/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (plmmr)