* installing *source* package ‘mvMAPIT’ ... ** package ‘mvMAPIT’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppSpdlog/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c MAPIT.cpp -o MAPIT.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppSpdlog/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppSpdlog/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gsm/gsm.cpp -o gsm/gsm.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppSpdlog/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c logging/log.cpp -o logging/log.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppSpdlog/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mapit/davies.cpp -o mapit/davies.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppSpdlog/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mapit/normal.cpp -o mapit/normal.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppSpdlog/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mapit/projection.cpp -o mapit/projection.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppSpdlog/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mapit/pve.cpp -o mapit/pve.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppSpdlog/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mapit/util.cpp -o mapit/util.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppSpdlog/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mqs/mqs.cpp -o mqs/mqs.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppSpdlog/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tests/test-compare-to-original-mapit.cpp -o tests/test-compare-to-original-mapit.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppSpdlog/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tests/test-davies.cpp -o tests/test-davies.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppSpdlog/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tests/test-gsm.cpp -o tests/test-gsm.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppSpdlog/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tests/test-log.cpp -o tests/test-log.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppSpdlog/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tests/test-mqs.cpp -o tests/test-mqs.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppSpdlog/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tests/test-normal.cpp -o tests/test-normal.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppSpdlog/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tests/test-projection.cpp -o tests/test-projection.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppSpdlog/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tests/test-pve.cpp -o tests/test-pve.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppSpdlog/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tests/test-runner.cpp -o tests/test-runner.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppSpdlog/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tests/test-util.cpp -o tests/test-util.o clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o mvMAPIT.so MAPIT.o RcppExports.o gsm/gsm.o logging/log.o mapit/davies.o mapit/normal.o mapit/projection.o mapit/pve.o mapit/util.o mqs/mqs.o tests/test-compare-to-original-mapit.o tests/test-davies.o tests/test-gsm.o tests/test-log.o tests/test-mqs.o tests/test-normal.o tests/test-projection.o tests/test-pve.o tests/test-runner.o tests/test-util.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/mvMAPIT.Rcheck/00LOCK-mvMAPIT/00new/mvMAPIT/libs ** generating debug symbols (dSYM) ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mvMAPIT)