Check results for 'lcmm'

using R version 4.4.0 (2024-04-24)
using platform: x86_64-apple-darwin20
R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0
running under: macOS Ventura 13.3.1
using session charset: UTF-8
checking for file ‘lcmm/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘lcmm’ version ‘2.1.0’
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘lcmm’ can be installed ... [99s/68s] OK See the install log for details.
used C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
used Fortran compiler: ‘GNU Fortran (GCC) 12.2.0’
used SDK: ‘MacOSX11.3.sdk’
checking installed package size ... OK
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [1s/1s] OK
checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
checking whether the package can be unloaded cleanly ... [1s/1s] OK
checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
checking loading without being on the library search path ... [1s/1s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [58s/61s] OK
checking Rd files ... [1s/1s] NOTE checkRd: (-1) Jointlcmm.Rd:377: Lost braces; missing escapes or markup? 377 | logscale=TRUE where {M_j} is the basis of cubic M-splines. | ^ checkRd: (-1) externVar.Rd:123: Lost braces 123 | code{cor=BM(time)}. By default, no autocorrelated Gaussian process is added.} | ^ checkRd: (-1) hlme.Rd:154: Lost braces 154 | item{best}{vector of parameter estimates in the same order as | ^ checkRd: (-1) hlme.Rd:154-155: Lost braces 154 | item{best}{vector of parameter estimates in the same order as | ^ checkRd: (-1) lcmm.Rd:269: Lost braces; missing escapes or markup? 269 | following transformation b_1 + b_2*I_1(Y(t)) + ... + b_{n+2} I_{n+1}(Y(t)), | ^ checkRd: (-1) lcmm.Rd:269: Lost braces; missing escapes or markup? 269 | following transformation b_1 + b_2*I_1(Y(t)) + ... + b_{n+2} I_{n+1}(Y(t)), | ^ checkRd: (-1) lcmm.Rd:270: Lost braces; missing escapes or markup? 270 | where I_1,...,I_{n+1} is the basis of quadratic I-splines. To constraint the | ^ checkRd: (-1) lcmm.Rd:276: Lost braces; missing escapes or markup? 276 | transformation: Y(t)=c <=> b_c < L(t) <= b_{c+1} with b_0 = - infinity and | ^ checkRd: (-1) lcmm.Rd:277: Lost braces; missing escapes or markup? 277 | b_{C+1}=+infinity. The number of parameters is reduced if some levels do not | ^ checkRd: (-1) lcmm.Rd:279: Lost braces; missing escapes or markup? 279 | dataset, the corresponding threshold b_{c+1} is constrained to be the same | ^ checkRd: (-1) lcmm.Rd:280: Lost braces; missing escapes or markup? 280 | as the previous one b_{c}. The number of parameters in the link function is | ^ checkRd: (-1) lcmm.Rd:285: Lost braces; missing escapes or markup? 285 | b_{k}=b_{k-1}+(b_k^*)^2. | ^ checkRd: (-1) lcmm.Rd:285: Lost braces; missing escapes or markup? 285 | b_{k}=b_{k-1}+(b_k^*)^2. | ^ checkRd: (-1) multlcmm.Rd:322: Lost braces; missing escapes or markup? 322 | following transformation b_1 + b_2*I_1(Y(t)) + ... + b_{n+2} I_{n+1}(Y(t)), | ^ checkRd: (-1) multlcmm.Rd:322: Lost braces; missing escapes or markup? 322 | following transformation b_1 + b_2*I_1(Y(t)) + ... + b_{n+2} I_{n+1}(Y(t)), | ^ checkRd: (-1) multlcmm.Rd:323: Lost braces; missing escapes or markup? 323 | where I_1,...,I_{n+1} is the basis of quadratic I-splines. To constraint the | ^ checkRd: (-1) multlcmm.Rd:330: Lost braces; missing escapes or markup? 330 | Y(t)=c <=> b_c < L(t) <= b_{c+1} with b_0 = - infinity and b_{C+1}=+infinity. | ^ checkRd: (-1) multlcmm.Rd:330: Lost braces; missing escapes or markup? 330 | Y(t)=c <=> b_c < L(t) <= b_{c+1} with b_0 = - infinity and b_{C+1}=+infinity. | ^ checkRd: (-1) multlcmm.Rd:333: Lost braces; missing escapes or markup? 333 | b_{k}=b_{k-1}+(b_k^*)^2. | ^ checkRd: (-1) multlcmm.Rd:333: Lost braces; missing escapes or markup? 333 | b_{k}=b_{k-1}+(b_k^*)^2. | ^ checkRd: (-1) print.lcmm.Rd:20: Lost braces 20 | for fitted latent class mixed-effects, or class \code{Jointlcmm}, code{mpjclmm} for | ^
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... [0s/0s] OK
checking LazyData ... OK
checking data for ASCII and uncompressed saves ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking compilation flags in Makevars ... OK
checking for GNU extensions in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking use of PKG_*FLAGS in Makefiles ... OK
checking compiled code ... OK
checking usage of KIND in Fortran files ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [10s/10s] OK
checking for unstated dependencies in vignettes ... OK
checking package vignettes ... OK
checking re-building of vignette outputs ... [11s/12s] OK
checking PDF version of manual ... [8s/8s] OK
DONE Status: 1 NOTE
using check arguments '--no-clean-on-error '