- using R version 4.4.0 (2024-04-24)
- using platform: x86_64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘fic/DESCRIPTION’ ... OK
- this is package ‘fic’ version ‘1.0.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘fic’ can be installed ... [7s/7s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
- checking loading without being on the library search path ... [2s/2s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [6s/6s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [7s/8s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [5s/5s] OK
Running ‘test_base.R’ [4s/5s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [55s/97s] WARNING
Error(s) in re-building vignettes:
--- re-building ‘fic.Rnw’ using knitr
Error: processing vignette 'fic.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'fic.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.413 \hlkwd{library}\hldef
{(}\hlsng{"fic"}\hldef{)}
?
! Emergency stop.
! Emergency stop.
l.413
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘fic.Rnw’
--- re-building ‘linear.Rnw’ using knitr
Error: processing vignette 'linear.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'linear.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.102 \hldef
{mtcars}\hlopt{$}\hldef{am} \hlkwb{<-} \hlkwd{factor}\hldef{(mtc...
?
! Emergency stop.
l.102
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘linear.Rnw’
--- re-building ‘loss.Rnw’ using knitr
Error: processing vignette 'loss.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'loss.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.86 \hlkwd{library}\hldef
{(fic)}
?
! Emergency stop.
! Emergency stop.
l.86
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘loss.Rnw’
--- re-building ‘multistate.Rnw’ using knitr
Error: processing vignette 'multistate.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'multistate.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.147 \hlkwa{if} \hldef
{(}\hlopt{!}\hlkwd{require}\hldef{(}\hlsng{"msm"}\hld...
?
! Emergency stop.
l.147
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘multistate.Rnw’
--- re-building ‘skewnormal.Rnw’ using knitr
Error: processing vignette 'skewnormal.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'skewnormal.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.110 \hldef
{ldsnorm} \hlkwb{<-} \hlkwa{function}\hldef{(}\hlkwc{x}\hldef{,}...
?
! Emergency stop.
l.110
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘skewnormal.Rnw’
--- re-building ‘survival.Rnw’ using knitr
Error: processing vignette 'survival.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'survival.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.97 \hlkwa{if} \hldef
{(}\hlopt{!}\hlkwd{require}\hldef{(}\hlsng{"flexsurv"}...
?
! Emergency stop.
l.97
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘survival.Rnw’
SUMMARY: processing the following files failed:
‘fic.Rnw’ ‘linear.Rnw’ ‘loss.Rnw’ ‘multistate.Rnw’ ‘skewnormal.Rnw’
‘survival.Rnw’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [8s/13s] OK
- DONE
Status: 1 WARNING
- using check arguments '--no-clean-on-error '