- using R version 4.4.0 (2024-04-24)
- using platform: x86_64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘colorSpec/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘colorSpec’ version ‘1.5-0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘colorSpec’ can be installed ... [2s/2s] OK
See the install log for details.
- checking installed package size ... NOTE
installed size is 5.3Mb
sub-directories of 1Mb or more:
doc 2.4Mb
extdata 2.1Mb
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking whether startup messages can be suppressed ... [0s/0s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [16s/23s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking R/sysdata.rda ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [4s/4s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [12s/19s] OK
Running ‘test-CGATS.R’ [1s/1s]
Running ‘test-atmos.R’ [0s/0s]
Running ‘test-bands.R’ [1s/1s]
Running ‘test-emulate.R’ [1s/1s]
Running ‘test-inventory.R’ [0s/1s]
Running ‘test-invert.R’ [2s/5s]
Running ‘test-optimals.R’ [2s/3s]
Running ‘test-organization.R’ [0s/1s]
Running ‘test-product.R’ [2s/3s]
Running ‘test-read.R’ [3s/3s]
Running ‘test-sink.R’ [0s/0s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [58s/73s] WARNING
Error(s) in re-building vignettes:
--- re-building ‘colorSpec-guide.Rmd’ using rmarkdown
--- finished re-building ‘colorSpec-guide.Rmd’
--- re-building ‘phenolred.Rmd’ using rmarkdown
--- finished re-building ‘phenolred.Rmd’
--- re-building ‘photoncounting.Rmd’ using rmarkdown
--- finished re-building ‘photoncounting.Rmd’
--- re-building ‘blueflame.rnw’ using knitr
Error: processing vignette 'blueflame.rnw' failed with diagnostics:
Running 'texi2dvi' on 'blueflame.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.151 \hlkwd{library}\hldef
{( colorSpec )}
?
! Emergency stop.
! Emergency stop.
l.151
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘blueflame.rnw’
--- re-building ‘convexity.rnw’ using knitr
Error: processing vignette 'convexity.rnw' failed with diagnostics:
Running 'texi2dvi' on 'convexity.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.160 \hlkwd{library}\hldef
{( colorSpec )}
?
! Emergency stop.
! Emergency stop.
l.160
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘convexity.rnw’
--- re-building ‘emulation.rnw’ using knitr
06:38:34.050 WARN colorSpec::product.colorSpec(). The returned matrix is ambiguous; because it depends on the splitting. Inspect the matrix carefully.
06:38:34.062 WARN colorSpec::product.colorSpec(). The returned matrix is ambiguous; because it depends on the splitting. Inspect the matrix carefully.
Error: processing vignette 'emulation.rnw' failed with diagnostics:
Running 'texi2dvi' on 'emulation.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.137 \hlkwd{library}\hldef
{( colorSpec )}
?
! Emergency stop.
! Emergency stop.
l.137
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘emulation.rnw’
--- re-building ‘gallery.rnw’ using knitr
Error: processing vignette 'gallery.rnw' failed with diagnostics:
Running 'texi2dvi' on 'gallery.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.126 \hlkwd{library}\hldef
{( colorSpec )}
?
! Emergency stop.
! Emergency stop.
l.126
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘gallery.rnw’
--- re-building ‘inversion.rnw’ using knitr
Error: processing vignette 'inversion.rnw' failed with diagnostics:
Running 'texi2dvi' on 'inversion.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.147 \hlkwd{library}\hldef
{( colorSpec )}
?
! Emergency stop.
! Emergency stop.
l.147
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘inversion.rnw’
--- re-building ‘lens-aging.rnw’ using knitr
Error: processing vignette 'lens-aging.rnw' failed with diagnostics:
Running 'texi2dvi' on 'lens-aging.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.147 \hlkwd{library}\hldef
{( colorSpec )}
?
! Emergency stop.
! Emergency stop.
l.147
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘lens-aging.rnw’
--- re-building ‘optimals.rnw’ using knitr
Error: processing vignette 'optimals.rnw' failed with diagnostics:
Running 'texi2dvi' on 'optimals.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.125 \hlkwd{library}\hldef
{( colorSpec )}
?
! Emergency stop.
! Emergency stop.
l.125
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘optimals.rnw’
SUMMARY: processing the following files failed:
‘blueflame.rnw’ ‘convexity.rnw’ ‘emulation.rnw’ ‘gallery.rnw’
‘inversion.rnw’ ‘lens-aging.rnw’ ‘optimals.rnw’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [9s/9s] OK
- DONE
Status: 1 WARNING, 1 NOTE
- using check arguments '--no-clean-on-error '