- using R version 4.4.0 (2024-04-24)
- using platform: x86_64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘catdata/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘catdata’ version ‘1.2.4’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘catdata’ can be installed ... [1s/1s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [0s/1s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [118s/133s] WARNING
Error(s) in re-building vignettes:
--- re-building ‘altbin-teratology.Rnw’ using knitr
Error: processing vignette 'altbin-teratology.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'altbin-teratology.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.73 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.73
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘altbin-teratology.Rnw’
--- re-building ‘binary-unemployment.Rnw’ using knitr
Error: processing vignette 'binary-unemployment.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'binary-unemployment.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.70 \hldef
{unemployment} \hlkwb{<-} \hlkwd{matrix}\hldef{(}\hlkwd{c}\hldef{...
?
! Emergency stop.
l.70
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘binary-unemployment.Rnw’
--- re-building ‘binary-vaso.Rnw’ using knitr
Error: processing vignette 'binary-vaso.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'binary-vaso.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.65 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.65
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘binary-vaso.Rnw’
--- re-building ‘count-children.Rnw’ using knitr
Error: processing vignette 'count-children.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'count-children.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.71 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.71
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘count-children.Rnw’
--- re-building ‘count-encephalitis.Rnw’ using knitr
Error: processing vignette 'count-encephalitis.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'count-encephalitis.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.66 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.66
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘count-encephalitis.Rnw’
--- re-building ‘count-insolvency.Rnw’ using knitr
Error: processing vignette 'count-insolvency.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'count-insolvency.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.66 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.66
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘count-insolvency.Rnw’
--- re-building ‘count-medcare.Rnw’ using knitr
Error: processing vignette 'count-medcare.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'count-medcare.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.66 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.66
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘count-medcare.Rnw’
--- re-building ‘loglinear-birth.Rnw’ using knitr
Error: processing vignette 'loglinear-birth.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'loglinear-birth.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.69 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.69
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘loglinear-birth.Rnw’
--- re-building ‘loglinear-leukoplakia.Rnw’ using knitr
Error: processing vignette 'loglinear-leukoplakia.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'loglinear-leukoplakia.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.71 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.71
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘loglinear-leukoplakia.Rnw’
--- re-building ‘modbin-dust.Rnw’ using knitr
Error: processing vignette 'modbin-dust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'modbin-dust.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.65 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.65
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘modbin-dust.Rnw’
--- re-building ‘modbin-foodstamp.Rnw’ using knitr
Error: processing vignette 'modbin-foodstamp.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'modbin-foodstamp.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.66 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.66
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘modbin-foodstamp.Rnw’
--- re-building ‘modbin-unemployment1.Rnw’ using knitr
Error: processing vignette 'modbin-unemployment1.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'modbin-unemployment1.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.70 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.70
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘modbin-unemployment1.Rnw’
--- re-building ‘modbin-unemployment2.Rnw’ using knitr
Error: processing vignette 'modbin-unemployment2.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'modbin-unemployment2.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.69 \hldef
{unemployment} \hlkwb{<-} \hlkwd{matrix}\hldef{(}\hlkwd{c}\hldef{...
?
! Emergency stop.
l.69
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘modbin-unemployment2.Rnw’
--- re-building ‘multinomial-addiction1.Rnw’ using knitr
Error: processing vignette 'multinomial-addiction1.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'multinomial-addiction1.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.71 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.71
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘multinomial-addiction1.Rnw’
--- re-building ‘multinomial-addiction2.Rnw’ using knitr
Error: processing vignette 'multinomial-addiction2.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'multinomial-addiction2.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.71 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.71
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘multinomial-addiction2.Rnw’
--- re-building ‘multinomial-party1.Rnw’ using knitr
Error: processing vignette 'multinomial-party1.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'multinomial-party1.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.71 \hldef
{partypref} \hlkwb{<-} \hlkwd{matrix}\hldef{(}\hlkwc{data}\hldef{...
?
! Emergency stop.
l.71
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘multinomial-party1.Rnw’
--- re-building ‘multinomial-party2.Rnw’ using knitr
Error: processing vignette 'multinomial-party2.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'multinomial-party2.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.72 \hldef
{partypref} \hlkwb{<-} \hlkwd{matrix}\hldef{(}\hlkwc{data}\hldef{...
?
! Emergency stop.
l.72
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘multinomial-party2.Rnw’
--- re-building ‘multinomial-travel.Rnw’ using knitr
Error: processing vignette 'multinomial-travel.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'multinomial-travel.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.72 \hlkwd{library}\hldef
{(mlogit)}
?
! Emergency stop.
! Emergency stop.
l.72
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘multinomial-travel.Rnw’
--- re-building ‘multivariate-birth1.Rnw’ using knitr
Error: processing vignette 'multivariate-birth1.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'multivariate-birth1.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.72 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.72
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘multivariate-birth1.Rnw’
--- re-building ‘multivariate-birth2.Rnw’ using knitr
Error: processing vignette 'multivariate-birth2.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'multivariate-birth2.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.71 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.71
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘multivariate-birth2.Rnw’
--- re-building ‘multivariate-knee.Rnw’ using knitr
Error: processing vignette 'multivariate-knee.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'multivariate-knee.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.71 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.71
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘multivariate-knee.Rnw’
--- re-building ‘ordinal-arthritis.Rnw’ using knitr
Error: processing vignette 'ordinal-arthritis.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'ordinal-arthritis.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.71 \hldef
{arthritis} \hlkwb{<-} \hlkwd{data.frame}\hldef{(}\hlkwc{drug}\hl...
?
! Emergency stop.
l.71
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘ordinal-arthritis.Rnw’
--- re-building ‘ordinal-knee1.Rnw’ using knitr
Error: processing vignette 'ordinal-knee1.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'ordinal-knee1.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.71 \hlkwd{rm}\hldef
{(}\hlkwc{list}\hldef{=}\hlkwd{ls}\hldef{(}\hlkwc{all}\...
?
! Emergency stop.
l.71
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘ordinal-knee1.Rnw’
--- re-building ‘ordinal-knee2.Rnw’ using knitr
Error: processing vignette 'ordinal-knee2.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'ordinal-knee2.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.69 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.69
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘ordinal-knee2.Rnw’
--- re-building ‘ordinal-retinopathy1.Rnw’ using knitr
Error: processing vignette 'ordinal-retinopathy1.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'ordinal-retinopathy1.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.71 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.71
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘ordinal-retinopathy1.Rnw’
--- re-building ‘ordinal-retinopathy2.Rnw’ using knitr
Error: processing vignette 'ordinal-retinopathy2.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'ordinal-retinopathy2.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.72 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.72
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘ordinal-retinopathy2.Rnw’
--- re-building ‘prediction-medcare.Rnw’ using knitr
Error: processing vignette 'prediction-medcare.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'prediction-medcare.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.72 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.72
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘prediction-medcare.Rnw’
--- re-building ‘random-aids.Rnw’ using knitr
Error: processing vignette 'random-aids.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'random-aids.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.71 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.71
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘random-aids.Rnw’
--- re-building ‘random-betablocker.Rnw’ using knitr
Error: processing vignette 'random-betablocker.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'random-betablocker.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.71 \hlkwd{library}\hldef
{(flexmix)}
?
! Emergency stop.
! Emergency stop.
l.71
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘random-betablocker.Rnw’
--- re-building ‘random-knee1.Rnw’ using knitr
Error: processing vignette 'random-knee1.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'random-knee1.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.72 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.72
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘random-knee1.Rnw’
--- re-building ‘random-knee2.Rnw’ using knitr
Error: processing vignette 'random-knee2.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'random-knee2.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.73 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.73
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘random-knee2.Rnw’
--- re-building ‘random-knee3.Rnw’ using knitr
Error: processing vignette 'random-knee3.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'random-knee3.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.71 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.71
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘random-knee3.Rnw’
--- re-building ‘semiparametric-addiction.Rnw’ using knitr
Error: processing vignette 'semiparametric-addiction.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'semiparametric-addiction.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.71 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.71
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘semiparametric-addiction.Rnw’
--- re-building ‘semiparametric-children.Rnw’ using knitr
Error: processing vignette 'semiparametric-children.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'semiparametric-children.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.71 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.71
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘semiparametric-children.Rnw’
--- re-building ‘semiparametric-dust.Rnw’ using knitr
Error: processing vignette 'semiparametric-dust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'semiparametric-dust.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.71 \hlkwd{library}\hldef
{(mgcv)}
?
! Emergency stop.
! Emergency stop.
l.71
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘semiparametric-dust.Rnw’
--- re-building ‘semiparametric-unemployment.Rnw’ using knitr
Error: processing vignette 'semiparametric-unemployment.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'semiparametric-unemployment.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.71 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.71
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘semiparametric-unemployment.Rnw’
--- re-building ‘tree-dust.Rnw’ using knitr
Error: processing vignette 'tree-dust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'tree-dust.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.71 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.71
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘tree-dust.Rnw’
--- re-building ‘tree-unemployment.Rnw’ using knitr
Error: processing vignette 'tree-unemployment.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'tree-unemployment.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.70 \hlkwd{library}\hldef
{(catdata)}
?
! Emergency stop.
! Emergency stop.
l.70
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘tree-unemployment.Rnw’
SUMMARY: processing the following files failed:
‘altbin-teratology.Rnw’ ‘binary-unemployment.Rnw’ ‘binary-vaso.Rnw’
‘count-children.Rnw’ ‘count-encephalitis.Rnw’ ‘count-insolvency.Rnw’
‘count-medcare.Rnw’ ‘loglinear-birth.Rnw’ ‘loglinear-leukoplakia.Rnw’
‘modbin-dust.Rnw’ ‘modbin-foodstamp.Rnw’ ‘modbin-unemployment1.Rnw’
‘modbin-unemployment2.Rnw’ ‘multinomial-addiction1.Rnw’
‘multinomial-addiction2.Rnw’ ‘multinomial-party1.Rnw’
‘multinomial-party2.Rnw’ ‘multinomial-travel.Rnw’
‘multivariate-birth1.Rnw’ ‘multivariate-birth2.Rnw’
‘multivariate-knee.Rnw’ ‘ordinal-arthritis.Rnw’ ‘ordinal-knee1.Rnw’
‘ordinal-knee2.Rnw’ ‘ordinal-retinopathy1.Rnw’
‘ordinal-retinopathy2.Rnw’ ‘prediction-medcare.Rnw’ ‘random-aids.Rnw’
‘random-betablocker.Rnw’ ‘random-knee1.Rnw’ ‘random-knee2.Rnw’
‘random-knee3.Rnw’ ‘semiparametric-addiction.Rnw’
‘semiparametric-children.Rnw’ ‘semiparametric-dust.Rnw’
‘semiparametric-unemployment.Rnw’ ‘tree-dust.Rnw’
‘tree-unemployment.Rnw’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [6s/10s] OK
- DONE
Status: 1 WARNING
- using check arguments '--no-clean-on-error '