* installing *source* package ‘bcf’ ...
** package ‘bcf’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -fPIC -falign-functions=64 -Wall -g -O2 -c TreeSamples.cpp -o TreeSamples.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -fPIC -falign-functions=64 -Wall -g -O2 -c bcf_clean.cpp -o bcf_clean.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -fPIC -falign-functions=64 -Wall -g -O2 -c bcf_clean_overpar.cpp -o bcf_clean_overpar.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -fPIC -falign-functions=64 -Wall -g -O2 -c bd.cpp -o bd.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -fPIC -falign-functions=64 -Wall -g -O2 -c funs.cpp -o funs.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -fPIC -falign-functions=64 -Wall -g -O2 -c logging.cpp -o logging.o
bcf_clean_overpar.cpp:106:3: warning: '/*' within block comment [-Wcomment]
/* Read, format y
^
bcf_clean_overpar.cpp:126:3: warning: '/*' within block comment [-Wcomment]
/* Read, format weights
^
bcf_clean_overpar.cpp:137:3: warning: '/*' within block comment [-Wcomment]
/* Read, format X_con
^
bcf_clean_overpar.cpp:162:3: warning: '/*' within block comment [-Wcomment]
/* Read, format X_mod
^
bcf_clean_overpar.cpp:193:3: warning: '/*' within block comment [-Wcomment]
/* Setup the model
^
funs.cpp:279:16: warning: unused variable 'tbn' [-Wunused-variable]
tree::tree_cp tbn; //the pointer to the bottom node for the current observations
^
funs.cpp:280:9: warning: unused variable 'ni' [-Wunused-variable]
size_t ni; //the index into vector of the current bottom node
^
funs.cpp:281:10: warning: unused variable 'xx' [-Wunused-variable]
double *xx; //current x
^
funs.cpp:282:9: warning: unused variable 'y' [-Wunused-variable]
double y; //current y
^
funs.cpp:318:9: warning: variable 'y' set but not used [-Wunused-but-set-variable]
double y; //current y
^
funs.cpp:324:7: warning: unused variable 'nb' [-Wunused-variable]
bvsz nb = bnv.size();
^
funs.cpp:351:9: warning: variable 'y' set but not used [-Wunused-but-set-variable]
double y; //current y
^
funs.cpp:354:7: warning: unused variable 'nb' [-Wunused-variable]
bvsz nb = bnv.size();
^
funs.cpp:376:9: warning: variable 'y' set but not used [-Wunused-but-set-variable]
double y; //current y
^
funs.cpp:404:10: warning: variable 'y' set but not used [-Wunused-but-set-variable]
double y; //current y
^
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -fPIC -falign-functions=64 -Wall -g -O2 -c rng.cpp -o rng.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppParallel/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -fPIC -falign-functions=64 -Wall -g -O2 -c tree.cpp -o tree.o
10 warnings generated.
tree.cpp:596:9: warning: variable 'pid' set but not used [-Wunused-but-set-variable]
size_t pid;
^
tree.cpp:636:9: warning: variable 'pid' set but not used [-Wunused-but-set-variable]
size_t pid;
^
5 warnings generated.
2 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o bcf.so RcppExports.o TreeSamples.o bcf_clean.o bcf_clean_overpar.o bd.o funs.o logging.o rng.o tree.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
/Volumes/Builds/packages/big-sur-x86_64/results/4.4/bcf.Rcheck/00_pkg_src/bcf/src/bcf_clean.o: no symbols
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/bcf.Rcheck/00LOCK-bcf/00new/bcf/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bcf)