• using R version 4.4.0 (2024-04-24)
• using platform: x86_64-apple-darwin20
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
• running under: macOS Ventura 13.3.1
• using session charset: UTF-8
• checking for file ‘Ecfun/DESCRIPTION’ ... OK
• this is package ‘Ecfun’ version ‘0.3-2’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘Ecfun’ can be installed ... [10s/10s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
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• checking loading without being on the library search path ... [2s/2s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/11s] OK
• checking Rd files ... [1s/1s] NOTE checkRd: (-1) BoxCox.Rd:266-269: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) BoxCox.Rd:270-275: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) BoxCox.Rd:276-284: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) BoxCox.Rd:285-293: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) Newdata.Rd:88-91: Lost braces     88 | {replace \code{newDat[, x2]}:        | ^ checkRd: (-1) interpPairs.Rd:120: Lost braces    120 | environment / list to use with code{object},        | ^ checkRd: (-1) matchQuote.Rd:72-74: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) matchQuote.Rd:75-80: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) matchQuote.Rd:81-88: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) matchQuote.Rd:89-94: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate.bic.glm.Rd:81-91: Lost braces in \itemize; meant \describe ? checkRd: (-1) simulate.bic.glm.Rd:92-103: Lost braces in \itemize; meant \describe ? checkRd: (-1) simulate.bic.glm.Rd:104-108: Lost braces in \itemize; meant \describe ? checkRd: (-1) simulate.glm.Rd:79-83: Lost braces in \itemize; meant \describe ? checkRd: (-1) simulate.glm.Rd:84-95: Lost braces in \itemize; meant \describe ? checkRd: (-1) simulate.glm.Rd:96-100: Lost braces in \itemize; meant \describe ?
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• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/2s] ERROR Running examples in ‘Ecfun-Ex.R’ failed The error most likely occurred in: > ### Name: asNumericDF > ### Title: Coerce to numeric dropping commas and info after a blank > ### Aliases: asNumericChar asNumericDF > ### Keywords: manip > > ### ** Examples > > ## > ## 1. an example > ## > (xDate <- as.Date('1970-01-01')+c(0, 365)) [1] "1970-01-01" "1971-01-01" > (xPOSIX <- as.POSIXct(xDate)+c(1, 99)) [1] "1970-01-01 00:00:01 UTC" "1971-01-01 00:01:39 UTC" > xMSdate <- as.Date(1, + as.Date('1899-12-31'))+1:2 > (fakeF1 <- data.frame(yr=c('1948', + '1947 (1)'), + q1=c(' 1,234 ', ''), duh=rep(NA, 2), + dol=c('$1,234', ''), + pct=c('1%', '2%'), + xDate=as.character(xDate, + format='%Y-%m-%d'), + xPOSIX=as.character(xPOSIX, + format='%Y-%m-%d %H:%M:%S'), + xMSdate=2:3, junk=c('this is', + 'junk'))) Warning in as.character.POSIXt(as.POSIXlt(x), ...) :   as.character(td, ..) no longer obeys a 'format' argument; use format(td, ..) ? Warning in as.character.POSIXt(xPOSIX, format = "%Y-%m-%d %H:%M:%S") :   as.character(td, ..) no longer obeys a 'format' argument; use format(td, ..) ?         yr q1 duh dol pct xDate xPOSIX xMSdate 1 1948 1,234 NA $1,234 1% 1970-01-01 1970-01-01 00:00:01 2 2 1947 (1) NA 2% 1971-01-01 1971-01-01 00:01:39 3      junk 1 this is 2 junk > > # This converts the last 3 columns to NAs and drops them: > > str(nF1.1 <- asNumericChar(fakeF1$yr))  num [1:2] 1948 1947 > str(nF1.2 <- asNumericChar(fakeF1$q1))  num [1:2] 1234 NA > str(nF1.3 <- asNumericChar(fakeF1$duh))  logi [1:2] NA NA > (nF1.4 <- asNumericChar('1969-12-31 18:00:01', + class.='POSIXct')) [1] "1969-12-31 23:00:01 UTC" > > (nF1 <- asNumericDF(fakeF1)) Warning in asNumericDF(fakeF1) :   NAs introduced by coercion in asNumericChar(q1[2]) Warning in asNumericDF(fakeF1) :   NAs introduced by coercion in asNumericChar(dol[2]) Warning in asNumericDF(fakeF1) :   NAs introduced by coercion in asNumericChar(xDate[c(1, 2)]) Warning in asNumericDF(fakeF1) :   NAs introduced by coercion in asNumericChar(xPOSIX[c(1, 2)]) Warning in asNumericDF(fakeF1) :   NAs introduced by coercion in asNumericChar(junk[c(1, 2)])     yr q1 dol pct xMSdate 1 1948 1234 1234 0.01 2 2 1947 NA NA 0.02 3 > (nF2 <- asNumericDF(fakeF1, Dates=6, + MSdate='xMSdate', + ignore=c('junk', 'xPOSIX'), + format.='%Y-%m-%d')) Warning in asNumericDF(fakeF1, Dates = 6, MSdate = "xMSdate", ignore = c("junk", :   NAs introduced by coercion in asNumericChar(q1[2]) Warning in asNumericDF(fakeF1, Dates = 6, MSdate = "xMSdate", ignore = c("junk", :   NAs introduced by coercion in asNumericChar(dol[2])     yr q1 dol pct xDate xPOSIX xMSdate junk 1 1948 1234 1234 0.01 1970-01-01 1970-01-01 00:00:01 1900-01-02 this is 2 1947 NA NA 0.02 1971-01-01 1971-01-01 00:01:39 1900-01-03 junk > # check > nF1. <- data.frame(yr= + asNumericChar(fakeF1$yr), + q1=asNumericChar(fakeF1$q1), + dol=asNumericChar(fakeF1$dol), + pct=c(.01, .02), xMSdate=2:3) > > nF1c <- data.frame(yr=1948:1947, + q1=c(1234, NA), dol=c(1234, NA), + pct=c(.01, .02), xMSdate=2:3) > > ## Don't show: > stopifnot( + ## End(Don't show) + all.equal(nF1, nF1.) + ## Don't show: + ) > ## End(Don't show) > ## Don't show: > stopifnot( + ## End(Don't show) + all.equal(nF1., nF1c) + ## Don't show: + ) > ## End(Don't show) > > ## > ## 2. as.Date default example > ## > xD <- asNumericChar( + as.character(xDate), class.='Date') > ## Don't show: > stopifnot( + ## End(Don't show) + all.equal(xDate, xD) + ## Don't show: + ) > ## End(Don't show) > > ## > ## 3. as.POSIXct default example > ## > xPOSIX [1] "1970-01-01 00:00:01 UTC" "1971-01-01 00:01:39 UTC" > (xPOSIXch <- as.character(xPOSIX)) [1] "1970-01-01 00:00:01" "1971-01-01 00:01:39" > (xP <- asNumericChar(xPOSIXch, class.='POSIXct')) [1] "1970-01-01 05:00:01 UTC" "1971-01-01 05:01:39 UTC" > attr(xPOSIX, 'tzone') [1] "UTC" > attr(xP, 'tzone') [1] "UTC" > # R-Devel after 4.2.1 breaks earlier code; fix > if(is.null(attr(xPOSIX, 'tzone'))) + attr(xPOSIX, 'tzone') <- attr(xP, 'tzone') > (dP <- difftime(xPOSIX, xP, units='secs')) Time differences in secs [1] -18000 -18000 > (madP <- max(abs(as.numeric(dP)))) [1] 18000 > ## Don't show: > stopifnot( + ## End(Don't show) + { + #all.equal(xPOSIX, xP) + # As of 2022-10-06 I don't know how to write code + # that will get a consistent answer with + # different version R-devel with differences + # less than an hour + if(madP>3600){ + stop('Discrepancy betw fn and manual comp ', + 'too large.') + } + TRUE + } + ## Don't show: + ) Error in stopifnot({ : Discrepancy betw fn and manual comp too large. Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [27s/29s] OK
• checking PDF version of manual ... [9s/10s] OK
• DONE Status: 1 ERROR, 1 NOTE
• using check arguments '--no-clean-on-error '