* installing *source* package ‘DOVE’ ... ** package ‘DOVE’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BS.cpp -o BS.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Cox.cpp -o Cox.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Cox_noX.cpp -o Cox_noX.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c compare.cpp -o compare.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c iteration.cpp -o iteration.o In file included from Cox.cpp:2: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:331:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:334:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ In file included from iteration.cpp:2: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:331:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:334:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ In file included from BS.cpp:2: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:331:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:334:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ In file included from Cox_noX.cpp:2: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:331:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:334:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ iteration.cpp:215:7: warning: unused variable 'j' [-Wunused-variable] int j; ^ 3 warnings generated. 3 warnings generated. 4 warnings generated. 3 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o DOVE.so BS.o Cox.o Cox_noX.o RcppExports.o compare.o iteration.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/DOVE.Rcheck/00LOCK-DOVE/00new/DOVE/libs ** generating debug symbols (dSYM) ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DOVE)