* installing *source* package ‘DAISIE’ ...
** package ‘DAISIE’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using Fortran compiler: ‘GNU Fortran (GCC) 12.2.0’
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++17
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c DAISIE_CS.cpp -o DAISIE_CS.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c DAISIE_IW.cpp -o DAISIE_IW.o
/opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c DAISIE_loglik_rhs_FORTRAN.f95 -o DAISIE_loglik_rhs_FORTRAN.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c R_init_DAISIE.c -o R_init_DAISIE.o
DAISIE_loglik_rhs_FORTRAN.f95:92:15:
92 | INTEGER :: il1(N), il2(N), il3in3(N), il4(N)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
DAISIE_loglik_rhs_FORTRAN.f95:219:15:
219 | INTEGER :: il1(N), il2(N), il3in3(N), il4(N)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
DAISIE_loglik_rhs_FORTRAN.f95:392:16:
392 | INTEGER :: il1(N), il2(N), il3in3(N), il4(N)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
DAISIE_loglik_rhs_FORTRAN.f95:104:28:
104 | CHARACTER(len=100) msg
| 1
Warning: Unused variable ‘msg’ declared at (1) [-Wunused-variable]
DAISIE_loglik_rhs_FORTRAN.f95:84:35:
84 | SUBROUTINE daisie_runmod (neq, t, Conc, dConc, yout, ip)
| 1
Warning: Unused dummy argument ‘neq’ at (1) [-Wunused-dummy-argument]
DAISIE_loglik_rhs_FORTRAN.f95:84:38:
84 | SUBROUTINE daisie_runmod (neq, t, Conc, dConc, yout, ip)
| 1
Warning: Unused dummy argument ‘t’ at (1) [-Wunused-dummy-argument]
DAISIE_loglik_rhs_FORTRAN.f95:225:30:
225 | DOUBLE PRECISION :: FF1, FFF
| 1
Warning: Unused variable ‘ff1’ declared at (1) [-Wunused-variable]
DAISIE_loglik_rhs_FORTRAN.f95:225:35:
225 | DOUBLE PRECISION :: FF1, FFF
| 1
Warning: Unused variable ‘fff’ declared at (1) [-Wunused-variable]
DAISIE_loglik_rhs_FORTRAN.f95:232:28:
232 | CHARACTER(len=100) msg
| 1
Warning: Unused variable ‘msg’ declared at (1) [-Wunused-variable]
DAISIE_loglik_rhs_FORTRAN.f95:211:36:
211 | SUBROUTINE daisie_runmod1 (neq, t, Conc, dConc, yout, ip)
| 1
Warning: Unused dummy argument ‘neq’ at (1) [-Wunused-dummy-argument]
DAISIE_loglik_rhs_FORTRAN.f95:211:39:
211 | SUBROUTINE daisie_runmod1 (neq, t, Conc, dConc, yout, ip)
| 1
Warning: Unused dummy argument ‘t’ at (1) [-Wunused-dummy-argument]
DAISIE_loglik_rhs_FORTRAN.f95:404:28:
404 | CHARACTER(len=100) msg
| 1
Warning: Unused variable ‘msg’ declared at (1) [-Wunused-variable]
DAISIE_loglik_rhs_FORTRAN.f95:384:36:
384 | SUBROUTINE daisie_runmod2 (neq, t, Conc, dConc, yout, ip)
| 1
Warning: Unused dummy argument ‘neq’ at (1) [-Wunused-dummy-argument]
DAISIE_loglik_rhs_FORTRAN.f95:384:39:
384 | SUBROUTINE daisie_runmod2 (neq, t, Conc, dConc, yout, ip)
| 1
Warning: Unused dummy argument ‘t’ at (1) [-Wunused-dummy-argument]
In file included from DAISIE_IW.cpp:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from DAISIE_IW.cpp:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from DAISIE_IW.cpp:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
Index replacements = 0;
^
In file included from DAISIE_IW.cpp:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0;
^
In file included from DAISIE_IW.cpp:19:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/CXX11/Tensor:114:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/CXX11/src/Tensor/TensorTrace.h:130:9: warning: variable 'num_distinct_reduce_dims' set but not used [-Wunused-but-set-variable]
int num_distinct_reduce_dims = 0;
^
DAISIE_CS.cpp:31:10: warning: unused variable 'abm_factor' [-Wunused-variable]
double abm_factor = default_abm_factor;
^
1 warning generated.
6 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o DAISIE.so DAISIE_CS.o DAISIE_IW.o DAISIE_loglik_rhs_FORTRAN.o R_init_DAISIE.o -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/DAISIE.Rcheck/00LOCK-DAISIE/00new/DAISIE/libs
** generating debug symbols (dSYM)
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DAISIE)