- using R version 4.4.1 (2024-06-14)
- using platform: aarch64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.4
- using session charset: UTF-8
- checking for file ‘symengine/DESCRIPTION’ ... OK
- this is package ‘symengine’ version ‘0.2.6’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘symengine’ can be installed ... [169s/198s] OK
See the install log for details.
- used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
- used SDK: ‘MacOSX11.3.sdk’
- checking installed package size ... NOTE
installed size is 45.8Mb
sub-directories of 1Mb or more:
libs 44.9Mb
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking whether startup messages can be suppressed ... [0s/0s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [2s/3s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in shell scripts ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking include directives in Makefiles ... OK
- checking compiled code ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [0s/1s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [5s/6s] ERROR
Running ‘testthat.R’ [5s/6s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(symengine)
SymEngine Version: 0.11.2
_____ _____ _
| __|_ _ _____| __|___ ___|_|___ ___
|__ | | | | __| | . | | | -_|
|_____|_ |_|_|_|_____|_|_|_ |_|_|_|___|
|___| |___|
>
> test_check("symengine")
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++11
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/odeintr/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include" -I"/private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/Rtmpcdp2pg/sourceCpp-aarch64-apple-darwin20-1.0.14" -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c file9cdb2b892ee.cpp -o file9cdb2b892ee.o
In file included from file9cdb2b892ee.cpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/euler.hpp:23:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/base/explicit_stepper_base.hpp:165:42: error: 'auto' not allowed in lambda parameter
m_resizer.adjust_size(in, [this](auto&& arg) { return this->resize_impl<StateIn>(std::forward<decltype(arg)>(arg)); });
^~~~
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/base/explicit_stepper_base.hpp:228:41: error: 'auto' not allowed in lambda parameter
m_resizer.adjust_size(x, [this](auto&& arg) { return this->resize_impl<StateInOut>(std::forward<decltype(arg)>(arg)); });
^~~~
In file included from file9cdb2b892ee.cpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint.hpp:28:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/runge_kutta4_classic.hpp:94:42: error: 'auto' not allowed in lambda parameter
m_resizer.adjust_size(in, [this](auto&& arg) { return this->resize_impl<StateIn>(std::forward<decltype(arg)>(arg)); });
^~~~
In file included from file9cdb2b892ee.cpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint.hpp:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/runge_kutta4.hpp:27:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/explicit_generic_rk.hpp:149:42: error: 'auto' not allowed in lambda parameter
m_resizer.adjust_size(in, [this](auto&& arg) { return this->resize_impl<StateIn>(std::forward<decltype(arg)>(arg)); });
^~~~
In file included from file9cdb2b892ee.cpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint.hpp:30:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/runge_kutta_cash_karp54.hpp:24:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/explicit_error_generic_rk.hpp:22:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/base/explicit_error_stepper_base.hpp:182:42: error: 'auto' not allowed in lambda parameter
m_resizer.adjust_size(in, [this](auto&& arg) { return this->resize_impl<StateIn>(std::forward<decltype(arg)>(arg)); });
^~~~
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/base/explicit_error_stepper_base.hpp:261:42: error: 'auto' not allowed in lambda parameter
m_resizer.adjust_size(in, [this](auto&& arg) { return this->resize_impl<StateIn>(std::forward<decltype(arg)>(arg)); });
^~~~
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/base/explicit_error_stepper_base.hpp:292:41: error: 'auto' not allowed in lambda parameter
m_resizer.adjust_size(x, [this](auto&& arg) { return this->resize_impl<StateInOut>(std::forward<decltype(arg)>(arg)); });
^~~~
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/base/explicit_error_stepper_base.hpp:301:41: error: 'auto' not allowed in lambda parameter
m_resizer.adjust_size(x, [this](auto&& arg) { return this->resize_impl<StateInOut>(std::forward<decltype(arg)>(arg)); });
^~~~
In file included from file9cdb2b892ee.cpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint.hpp:30:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/runge_kutta_cash_karp54.hpp:24:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/explicit_error_generic_rk.hpp:132:42: error: 'auto' not allowed in lambda parameter
m_resizer.adjust_size(in, [this](auto&& arg) { return this->resize_impl<StateIn>(std::forward<decltype(arg)>(arg)); });
^~~~
In file included from file9cdb2b892ee.cpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint.hpp:31:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/runge_kutta_cash_karp54_classic.hpp:148:42: error: 'auto' not allowed in lambda parameter
m_resizer.adjust_size(in, [this](auto&& arg) { return this->resize_impl<StateIn>(std::forward<decltype(arg)>(arg)); });
^~~~
In file included from file9cdb2b892ee.cpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint.hpp:32:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/runge_kutta_dopri5.hpp:25:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/base/explicit_error_stepper_fsal_base.hpp:180:46: error: 'auto' not allowed in lambda parameter
if( m_resizer.adjust_size(in, [this](auto&& arg) { return this->resize_impl<StateIn>(std::forward<decltype(arg)>(arg)); }) || m_first_call )
^~~~
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/base/explicit_error_stepper_fsal_base.hpp:254:46: error: 'auto' not allowed in lambda parameter
if( m_resizer.adjust_size(in, [this](auto&& arg) { return this->resize_impl<StateIn>(std::forward<decltype(arg)>(arg)); }) || m_first_call )
^~~~
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/base/explicit_error_stepper_fsal_base.hpp:313:45: error: 'auto' not allowed in lambda parameter
if( m_resizer.adjust_size(x, [this](auto&& arg) { return this->resize_impl<StateInOut>(std::forward<decltype(arg)>(arg)); }) || m_first_call )
^~~~
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/base/explicit_error_stepper_fsal_base.hpp:323:45: error: 'auto' not allowed in lambda parameter
if( m_resizer.adjust_size(x, [this](auto&& arg) { return this->resize_impl<StateInOut>(std::forward<decltype(arg)>(arg)); }) || m_first_call )
^~~~
In file included from file9cdb2b892ee.cpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint.hpp:32:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/runge_kutta_dopri5.hpp:128:50: error: 'auto' not allowed in lambda parameter
m_k_x_tmp_resizer.adjust_size(in, [this](auto&& arg) { return this->resize_k_x_tmp_impl<StateIn>(std::forward<decltype(arg)>(arg)); });
^~~~
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/runge_kutta_dopri5.hpp:182:55: error: 'auto' not allowed in lambda parameter
m_dxdt_tmp_resizer.adjust_size(in, [this](auto&& arg) { return this->resize_dxdt_tmp_impl<StateIn>(std::forward<decltype(arg)>(arg)); });
^~~~
In file included from file9cdb2b892ee.cpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint.hpp:35:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/controlled_runge_kutta.hpp:340:46: error: 'auto' not allowed in lambda parameter
m_xnew_resizer.adjust_size(x, [this](auto&& arg) { return this->resize_m_xnew_impl<StateInOut>(std::forward<decltype(arg)>(arg)); });
^~~~
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/controlled_runge_kutta.hpp:381:47: error: 'auto' not allowed in lambda parameter
m_dxdt_resizer.adjust_size(in, [this](auto&& arg) { return this->resize_m_dxdt_impl<StateIn>(std::forward<decltype(arg)>(arg)); });
^~~~
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/numeric/odeint/stepper/controlled_runge_kutta.hpp:422:47: error: 'auto' not allowed in lambda parameter
m_xerr_resizer.adjust_size(in, [this](auto&& arg) { return this->resize_m_xerr_impl<StateIn>(std::forward<decltype(arg)>(arg)); });
^~~~
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
make: *** [file9cdb2b892ee.o] Error 1
[ FAIL 1 | WARN 0 | SKIP 11 | PASS 644 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (1): 'test-basic_parser.R:222:5'
• empty test (8): 'test-basic_language_conversion.R:16:1',
'test-symengine_is_working.R:15:1', 'test-symengine_is_working.R:19:1',
'test-symengine_is_working.R:23:1', 'test-vecbasic_constructors.R:73:1',
'test-vecbasic_constructors.R:76:1', 'test-vecbasic_constructors.R:80:1',
'test-vecbasic_s4bindings.R:9:1'
• symengine_have_component("llvm") is not TRUE (2):
'test-double_visitor.R:23:5', 'test-double_visitor.R:34:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ODESystem.R:20:5'): ODESystem and predict works ────────────────
Error in `Rcpp::sourceCpp(code = rcpp_code, env = compile_sys_env, verbose = FALSE)`: Error 1 occurred building shared library.
Backtrace:
▆
1. └─symengine::ODESystem(eq1, eq2) at test-ODESystem.R:20:5
2. └─Rcpp::sourceCpp(code = rcpp_code, env = compile_sys_env, verbose = FALSE)
[ FAIL 1 | WARN 0 | SKIP 11 | PASS 644 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [11s/13s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘odesystem.Rmd’ using rmarkdown
Quitting from lines 77-83 [unnamed-chunk-5] (odesystem.Rmd)
Error: processing vignette 'odesystem.Rmd' failed with diagnostics:
Error 1 occurred building shared library.
--- failed re-building ‘odesystem.Rmd’
--- re-building ‘quick_start.Rmd’ using rmarkdown
--- finished re-building ‘quick_start.Rmd’
SUMMARY: processing the following file failed:
‘odesystem.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [4s/5s] OK
- DONE
Status: 2 ERRORs, 2 NOTEs
- using check arguments '--no-clean-on-error '