Install log for 'surveyvoi'

* installing *source* package ‘surveyvoi’ ...
** package ‘surveyvoi’ successfully unpacked and MD5 sums checked
** using staged installation
checking if R found... yes
configure: R version: 4.4.0
checking for pkg-config... yes
configure: Package PKG_CPPFLAGS: -I/opt/R/arm64/include -I/opt/R/arm64/include -I/opt/R/arm64/include
configure: Package PKG_LIBS:      -L/opt/R/arm64/lib -lgmpxx -lgmp -L/opt/R/arm64/lib -lmpfr -lgmp
checking if gmp compiles... yes
checking if mpfr compiles... yes
configure: configuration successful!
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
rm -f surveyvoi.so RcppExports.o functions.o init.o rcpp_approx_expected_value_of_decision_given_survey_scheme.o rcpp_expected_value_of_action.o rcpp_expected_value_of_decision_given_current_info.o rcpp_expected_value_of_decision_given_survey_scheme.o rcpp_feasible_actions_ilp_matrix.o rcpp_heuristic_prioritization.o rcpp_model_performance.o rcpp_pmedian_constraint_matrix.o rcpp_probability.o rcpp_sample_states.o rcpp_states.o rcpp_update_posterior_probability_matrix.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/PoissonBinomial/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/PoissonBinomial/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c functions.cpp -o functions.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/PoissonBinomial/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c init.c -o init.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/PoissonBinomial/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c rcpp_approx_expected_value_of_decision_given_survey_scheme.cpp -o rcpp_approx_expected_value_of_decision_given_survey_scheme.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/PoissonBinomial/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c rcpp_expected_value_of_action.cpp -o rcpp_expected_value_of_action.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/PoissonBinomial/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c rcpp_expected_value_of_decision_given_current_info.cpp -o rcpp_expected_value_of_decision_given_current_info.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/PoissonBinomial/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c rcpp_expected_value_of_decision_given_survey_scheme.cpp -o rcpp_expected_value_of_decision_given_survey_scheme.o
rcpp_expected_value_of_decision_given_survey_scheme.cpp:37:21: warning: unused variable 'n_f_outcomes' [-Wunused-variable]
  const std::size_t n_f_outcomes = n_states(n_pu_surveyed_in_scheme) + 1;
                    ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/PoissonBinomial/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c rcpp_feasible_actions_ilp_matrix.cpp -o rcpp_feasible_actions_ilp_matrix.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/PoissonBinomial/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c rcpp_heuristic_prioritization.cpp -o rcpp_heuristic_prioritization.o
rcpp_heuristic_prioritization.cpp:10:21: warning: unused variable 'n_f' [-Wunused-variable]
  const std::size_t n_f = rij.rows();
                    ^
rcpp_heuristic_prioritization.cpp:33:10: warning: unused variable 'curr_cost' [-Wunused-variable]
  double curr_cost;
         ^
2 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/PoissonBinomial/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c rcpp_model_performance.cpp -o rcpp_model_performance.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/PoissonBinomial/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c rcpp_pmedian_constraint_matrix.cpp -o rcpp_pmedian_constraint_matrix.o
rcpp_pmedian_constraint_matrix.cpp:8:15: warning: unused variable 'n_vars' [-Wunused-variable]
  std::size_t n_vars = n + (n * n);
              ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/PoissonBinomial/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c rcpp_probability.cpp -o rcpp_probability.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/PoissonBinomial/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c rcpp_sample_states.cpp -o rcpp_sample_states.o
rcpp_sample_states.cpp:62:21: warning: unused variable 'n_v' [-Wunused-variable]
  const std::size_t n_v = pij.size();
                    ^
rcpp_sample_states.cpp:115:21: warning: unused variable 'n_v' [-Wunused-variable]
  const std::size_t n_v = pij.size();
                    ^
2 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/PoissonBinomial/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c rcpp_states.cpp -o rcpp_states.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/PoissonBinomial/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c rcpp_update_posterior_probability_matrix.cpp -o rcpp_update_posterior_probability_matrix.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o surveyvoi.so RcppExports.o functions.o init.o rcpp_approx_expected_value_of_decision_given_survey_scheme.o rcpp_expected_value_of_action.o rcpp_expected_value_of_decision_given_current_info.o rcpp_expected_value_of_decision_given_survey_scheme.o rcpp_feasible_actions_ilp_matrix.o rcpp_heuristic_prioritization.o rcpp_model_performance.o rcpp_pmedian_constraint_matrix.o rcpp_probability.o rcpp_sample_states.o rcpp_states.o rcpp_update_posterior_probability_matrix.o -L/opt/R/arm64/lib -lgmpxx -lgmp -L/opt/R/arm64/lib -lmpfr -lgmp -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.4/surveyvoi.Rcheck/00LOCK-surveyvoi/00new/surveyvoi/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (surveyvoi)