* installing *source* package ‘rxode2et’ ...
** package ‘rxode2et’ successfully unpacked and MD5 sums checked
** using staged installation

R version 4.4.0 (2024-04-24) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

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> ## This is only for rxode2
> .in <- suppressWarnings(readLines("src/Makevars.in"))
> 
> if (.Platform$OS.type == "windows" && !file.exists("src/Makevars.win")) {
+   .in <- gsub("@CXX14STD@", "-std=c++1y", .in)
+   file.out <- file("src/Makevars.win", "wb")
+   writeLines(gsub("@ISYSTEM@", "I", .in),
+              file.out)
+   close(file.out)
+ } else {
+   .in <- gsub("@CXX14STD@", "-std=gnu++14", .in)
+   file.out <- file("src/Makevars", "wb")
+   writeLines(gsub("@ISYSTEM@", "isystem", .in),
+              file.out)
+   close(file.out)
+ }
> 
> if (file.exists("man/reexports.Rd")) {
+   l <- readLines("man/reexports.Rd")
+   if (!any(regexpr("[\\]value", l) != -1)) {
+     l <- c(l, "\\value{ Inherited from parent routine }")
+     file.out <- file("man/reexports.Rd", "wb")
+     writeLines(l, file.out)
+     close(file.out)
+   }
+ }
> 
> 
> unlink("R/rxode2_md5.R")
> 
> cpp <- list.files("src", pattern = ".(c|h|cpp|f)$")
> #Rfiles <- list.files("R/", pattern = ".R")
> 
> cmd <- file.path(R.home("bin"), "R")
> args <- c("CMD", "config")
> 
> md5 <- digest::digest(c(lapply(c(paste0("src/", cpp)#,
+                                  #paste0("inst/include/", include)#,
+                                  #paste0("R/", Rfiles)
+                                  ), digest::digest, file = TRUE),
+                         ## vapply(c("BLAS_LIBS", "CC",  "CFLAGS", "CPICFLAGS",
+                         ##          "CXX", "CXXFLAGS", "CXXPICFLAGS",
+                         ##          "CXX11", "CXX11STD", "CXX11FLAGS", "CXX11PICFLAGS",
+                         ##          "CXX14", "CXX14STD", "CXX14FLAGS", "CXX14PICFLAGS",
+                         ##          "CXX17", "CXX17STD", "CXX17FLAGS", "CXX17PICFLAGS",
+                         ##          "CXX20", "CXX20STD", "CXX20FLAGS", "CXX20PICFLAGS",
+                         ##          "FC", "FFLAGS", "FCFLAGS",  "FPICFLAGS"),
+                         ##        function(cfg) {
+                         ##          rawToChar(sys::exec_internal(cmd, c(args, cfg))$stdout)
+                         ##        }, character(1)
+                         ##       ),
+                         ""
+                         ))
> unlink("R/rxode2et_md5.R")
> md5file <- file("R/rxode2et_md5.R", "wb")
> writeLines(sprintf("rxode2et.md5 <- \"%s\"\n", md5), md5file)
> close(md5file)
> 
> l <- readLines(file.path(system.file(package="rxode2random"), "include", "rxode2random_as.h"))
> l <- gsub("qtest", "_rxode2et_qtest", l)
> 
> rxode2et_as.h <- file("src/rxode2et_as.h", "wb")
> writeLines(l, rxode2et_as.h)
> close(rxode2et_as.h)
> 
> proc.time()
   user  system elapsed 
  0.099   0.034   0.149 
--------[begin src/Makevars]--------
# -*- mode: makefile-gmake -*-
################################################################################
## Package library flags.
PKG_LIBS    = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(SHLIB_OPENMP_CXXFLAGS)

# Release options
PKG_CFLAGS  =  -D_isrxode2et_
PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) -D_isrxode2et_ 
--------[end src/Makevars]--------
--------[begin R/rxode2et_md5.R]--------
rxode2et.md5 <- "f3801ebf6c12354dcbe005e51737da8c"

--------[begin R/rxode2et_md5.R]--------
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rxode2random/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rxode2parse/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I/opt/R/arm64/include    -D_isrxode2et_  -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rxode2random/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rxode2parse/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I/opt/R/arm64/include    -D_isrxode2et_  -fPIC  -falign-functions=64 -Wall -g -O2   -c cbindThetaOmega.cpp -o cbindThetaOmega.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rxode2random/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rxode2parse/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I/opt/R/arm64/include    -D_isrxode2et_  -fPIC  -falign-functions=64 -Wall -g -O2   -c et.cpp -o et.o
et.cpp:488:8: warning: unused variable 'naTime' [-Wunused-variable]
  bool naTime=false;
       ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rxode2random/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rxode2parse/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I/opt/R/arm64/include    -D_isrxode2et_  -fPIC  -falign-functions=64 -Wall -g -O2   -c etTran.cpp -o etTran.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rxode2random/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rxode2parse/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I/opt/R/arm64/include   -D_isrxode2et_ -fPIC  -falign-functions=64 -Wall -g -O2  -c init.c -o init.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rxode2random/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rxode2parse/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I/opt/R/arm64/include   -D_isrxode2et_ -fPIC  -falign-functions=64 -Wall -g -O2  -c isEt.c -o isEt.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rxode2random/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rxode2parse/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I/opt/R/arm64/include    -D_isrxode2et_  -fPIC  -falign-functions=64 -Wall -g -O2   -c rxStack.cpp -o rxStack.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rxode2random/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rxode2parse/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I/opt/R/arm64/include    -D_isrxode2et_  -fPIC  -falign-functions=64 -Wall -g -O2   -c rxode2random.cpp -o rxode2random.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o rxode2et.so RcppExports.o cbindThetaOmega.o et.o etTran.o init.o isEt.o rxStack.o rxode2random.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: could not create compact unwind for ___emutls_get_address: registers 23 and 24 not saved contiguously in frame
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.4/rxode2et.Rcheck/00LOCK-rxode2et/00new/rxode2et/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rxode2et)