* installing *source* package ‘mmcif’ ...
** package ‘mmcif’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using Fortran compiler: ‘GNU Fortran (GCC) 12.2.0’
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++17
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c R-interface.cpp -o R-interface.o
In file included from R-interface.cpp:1:
In file included from ./arma-wrap.h:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo:26:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
#pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
#pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
#pragma message ("INFO: see the documentation for details")
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bases.cpp -o bases.o
In file included from bases.cpp:1:
In file included from ./bases.h:4:
In file included from ./arma-wrap.h:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo:26:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
#pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
#pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
#pragma message ("INFO: see the documentation for details")
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c create-pair.cpp -o create-pair.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fast-commutation.cpp -o fast-commutation.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ghq.cpp -o ghq.o
In file included from ghq.cpp:1:
In file included from ./ghq.h:5:
In file included from ./arma-wrap.h:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo:26:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
#pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
#pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
#pragma message ("INFO: see the documentation for details")
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c integrand-cond-pbvn.cpp -o integrand-cond-pbvn.o
In file included from integrand-cond-pbvn.cpp:1:
In file included from ./integrand-cond-pbvn.h:4:
In file included from ./ghq.h:5:
In file included from ./arma-wrap.h:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo:26:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
#pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
#pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
#pragma message ("INFO: see the documentation for details")
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c integrand-mixed-mult-logit-term.cpp -o integrand-mixed-mult-logit-term.o
In file included from integrand-mixed-mult-logit-term.cpp:1:
In file included from ./integrand-mixed-mult-logit-term.h:4:
In file included from ./ghq.h:5:
In file included from ./arma-wrap.h:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo:26:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
#pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
#pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
#pragma message ("INFO: see the documentation for details")
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c integrand-probit-term.cpp -o integrand-probit-term.o
In file included from integrand-probit-term.cpp:1:
In file included from ./integrand-probit-term.h:4:
In file included from ./ghq.h:5:
In file included from ./arma-wrap.h:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo:26:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
#pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
#pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
#pragma message ("INFO: see the documentation for details")
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mcif-logLik.cpp -o mcif-logLik.o
In file included from mcif-logLik.cpp:1:
In file included from ./mmcif-logLik.h:4:
In file included from ./ghq.h:5:
In file included from ./arma-wrap.h:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo:26:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
#pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
#pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
#pragma message ("INFO: see the documentation for details")
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mmcif-logLik.cpp -o mmcif-logLik.o
In file included from mmcif-logLik.cpp:2:
In file included from ./mmcif-logLik.h:4:
In file included from ./ghq.h:5:
In file included from ./arma-wrap.h:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo:26:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
#pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
#pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
#pragma message ("INFO: see the documentation for details")
^
3 warnings generated.
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c mvbvu.f -o mvbvu.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c norm-cdf-fortran.c -o norm-cdf-fortran.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c qnorm.c -o qnorm.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-bases.cpp -o test-bases.o
In file included from test-bases.cpp:2:
In file included from ./bases.h:4:
In file included from ./arma-wrap.h:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo:26:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
#pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
#pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
#pragma message ("INFO: see the documentation for details")
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-ghq.cpp -o test-ghq.o
In file included from test-ghq.cpp:1:
In file included from ./ghq.h:5:
In file included from ./arma-wrap.h:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo:26:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
#pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
#pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
#pragma message ("INFO: see the documentation for details")
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-integrand-cond-pbvn.cpp -o test-integrand-cond-pbvn.o
In file included from test-integrand-cond-pbvn.cpp:2:
In file included from ./integrand-cond-pbvn.h:4:
In file included from ./ghq.h:5:
In file included from ./arma-wrap.h:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo:26:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
#pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
#pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
#pragma message ("INFO: see the documentation for details")
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-integrand-mixed-mult-logit-term.cpp -o test-integrand-mixed-mult-logit-term.o
In file included from test-integrand-mixed-mult-logit-term.cpp:1:
In file included from ./integrand-mixed-mult-logit-term.h:4:
In file included from ./ghq.h:5:
In file included from ./arma-wrap.h:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo:26:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
#pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
#pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
#pragma message ("INFO: see the documentation for details")
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-integrand-probit-term.cpp -o test-integrand-probit-term.o
In file included from test-integrand-probit-term.cpp:1:
In file included from ./integrand-probit-term.h:4:
In file included from ./ghq.h:5:
In file included from ./arma-wrap.h:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo:26:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
#pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
#pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
#pragma message ("INFO: see the documentation for details")
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-log-cholesky.cpp -o test-log-cholesky.o
In file included from test-log-cholesky.cpp:2:
In file included from ./log-cholesky.h:3:
In file included from ./arma-wrap.h:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo:26:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
#pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
#pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
#pragma message ("INFO: see the documentation for details")
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-lp-mmcif.cpp -o test-lp-mmcif.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-mcif-logLik.cpp -o test-mcif-logLik.o
In file included from test-mcif-logLik.cpp:1:
In file included from ./mmcif-logLik.h:4:
In file included from ./ghq.h:5:
In file included from ./arma-wrap.h:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo:26:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
#pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
#pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
#pragma message ("INFO: see the documentation for details")
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-mmcif-logLik.cpp -o test-mmcif-logLik.o
In file included from test-mmcif-logLik.cpp:2:
In file included from ./mmcif-logLik.h:4:
In file included from ./ghq.h:5:
In file included from ./arma-wrap.h:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo:26:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
#pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
#pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
#pragma message ("INFO: see the documentation for details")
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-mmcif-misc.cpp -o test-mmcif-misc.o
In file included from test-mmcif-misc.cpp:1:
In file included from ./mmcif-misc.h:5:
In file included from ./arma-wrap.h:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo:26:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
#pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
#pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
#pragma message ("INFO: see the documentation for details")
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-param-indexer.cpp -o test-param-indexer.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-pbvn.cpp -o test-pbvn.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-runner.cpp -o test-runner.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c wmem.cpp -o wmem.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o mmcif.so R-interface.o RcppExports.o bases.o create-pair.o fast-commutation.o ghq.o integrand-cond-pbvn.o integrand-mixed-mult-logit-term.o integrand-probit-term.o mcif-logLik.o mmcif-logLik.o mvbvu.o norm-cdf-fortran.o qnorm.o test-bases.o test-ghq.o test-integrand-cond-pbvn.o test-integrand-mixed-mult-logit-term.o test-integrand-probit-term.o test-log-cholesky.o test-lp-mmcif.o test-mcif-logLik.o test-mmcif-logLik.o test-mmcif-misc.o test-param-indexer.o test-pbvn.o test-runner.o wmem.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: could not create compact unwind for _mvbvu_: registers 78 and 79 not saved contiguously in frame
ld: warning: could not create compact unwind for ___emutls_get_address: registers 23 and 24 not saved contiguously in frame
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.4/mmcif.Rcheck/00LOCK-mmcif/00new/mmcif/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mmcif)