- using R version 4.4.1 (2024-06-14)
- using platform: aarch64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.4
- using session charset: UTF-8
- checking for file ‘mRMRe/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘mRMRe’ version ‘2.1.2.2’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘mRMRe’ can be installed ... [6s/8s] OK
See the install log for details.
- used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
- used SDK: ‘MacOSX11.3.sdk’
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [3s/3s] OK
- checking Rd files ... [0s/0s] NOTE
checkRd: (-1) correlate.Rd:16: Lost braces; missing escapes or markup?
16 | \item{X}{Vector of type {numeric, ordered factor, or Surv}.}
| ^
checkRd: (-1) correlate.Rd:17: Lost braces; missing escapes or markup?
17 | \item{Y}{Vector of type {numeric, ordered factor, or Surv} of same length as \code{X}.}
| ^
checkRd: (-1) correlate.Rd:18: Lost braces; missing escapes or markup?
18 | \item{method}{One of the following values: {pearson, spearman, kendall, frequency, cramersv, or cindex}.}
| ^
checkRd: (-1) correlate.Rd:19: Lost braces; missing escapes or markup?
19 | \item{strata}{Vector of type {factor} corresponding to the sample strata.}
| ^
checkRd: (-1) correlate.Rd:20: Lost braces; missing escapes or markup?
20 | \item{weights}{Vector of type {numeric} corresponding to the sample weights.}
| ^
checkRd: (-1) correlate.Rd:24: Lost braces; missing escapes or markup?
24 | \item{alternative}{a character string specifying the alternative hypothesis,must be one of {two.sided (default), greater or less}. You can specify just the initial letter.}
| ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
20 | have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
| ^
checkRd: (-1) mRMRe.Data-class.Rd:20: Lost braces; missing escapes or markup?
20 | have to be of type :{numeric, ordered factor, Surv} and respectively interpreted as :{continuous, discrete and survival} variables.
| ^
checkRd: (-1) mRMRe.Data-class.Rd:22: Lost braces; missing escapes or markup?
22 | \code{strata}: is expected to be a vector of type :{ordered factor} with the strata associated to the samples provided
| ^
checkRd: (-1) mRMRe.Data-class.Rd:25: Lost braces; missing escapes or markup?
25 | \code{weights}: is expected to be a vector of type :{numeric} with the weights associated to the samples provided
| ^
checkRd: (-1) mRMRe.Data-class.Rd:28: Lost braces; missing escapes or markup?
28 | \code{priors}: is expected to be a matrix of type :{numeric} where \code{priors[i, j]}: denotes an forced association between
| ^
checkRd: (-1) mRMRe.Data-class.Rd:34: Lost braces; missing escapes or markup?
34 | using an estimator specified in \code{continuous_estimator}; currently, :{pearson, spearman, kendall, frequency} are supported.
| ^
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking compiled code ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [6s/8s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [9s/10s] OK
- checking PDF version of manual ... [5s/6s] OK
- DONE
Status: 1 NOTE
- using check arguments '--no-clean-on-error '